BLAST/PSIBLAST alignment of GI: 254780947 and GI: 116252138 at iteration 1
>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] Length = 1166
>gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] Length = 1166
Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/1173 (54%), Positives = 841/1173 (71%), Gaps = 21/1173 (1%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D ++++ + +T+ V G E +LAE+AR G + Y+ SD + +L+++L
Sbjct: 1 MIPGFDAKKLA-AIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLG 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ PAWDCLPYDRVSPS RRL+ + L++ IVL T +A++
Sbjct: 60 FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
+ I+ S + +Q+ M + +LE NGF+RV V +VGEYAVRGGILDV+ P
Sbjct: 120 KVAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
+ PVRLDFFG+T++S+R FD ++QRTI ++ ++N +SEV LT ISRFR+NYL+ F
Sbjct: 180 SEEPVRLDFFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F I+ D V+E A +RS+
Sbjct: 240 GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSK 299
Query: 301 LIQDYYEARLQYSSDKK---QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQE 357
L+ DYY+ARL K Q + YKP+ P +LYL+ + F + ++++ FN+ E
Sbjct: 300 LVLDYYDARLNSGQPAKGMTQGTPYKPVTPGQLYLDSKLFAKTLDALGA-IRISPFNEHE 358
Query: 358 TAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGIKT 411
RVV+++A G+ W ++ N E GG FD + H+A + G K
Sbjct: 359 GEARRVVNVDARQGQRW---------ARANAEGGGDAERINIFDVVVKHIADRRAAGAKV 409
Query: 412 IISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMIL 471
+++A ++G+L+ L+ ++ HG +K+K I L ++ SL + E AA +L + GFE +++
Sbjct: 410 LVTAWTEGSLERLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDLVV 469
Query: 472 VTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTF 531
+ E D+LG ++ RR R+K A + + ++EG+I+VHAEHGIGRF+ L +IE +G
Sbjct: 470 IGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAP 528
Query: 532 HDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQ 591
H CLEL YAD AKLF+PVENIDL+SRY E T LDKLGG AW+ RKA LKKRL D+A
Sbjct: 529 HACLELQYADEAKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMAD 588
Query: 592 KLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLI 651
L+ IAA+R P L + LY +F RFP+ ETEDQE AI+AV DL +GR MDRL+
Sbjct: 589 ALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDRLV 648
Query: 652 CGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRF 711
CGDVGFGKTE+ALRAAF+A MNG QVA++ PTTLL RQHF+ FS+RF+G VRI SR
Sbjct: 649 CGDVGFGKTEVALRAAFVAAMNGAQVAIVVPTTLLSRQHFKTFSDRFRGLPVRIQQASRL 708
Query: 712 VQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETH 771
V KE AL KK + EG+ DIV+GTHALL I FANLGL++IDEEQHFGVKHKE LKE
Sbjct: 709 VGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELK 768
Query: 772 TGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREY 831
+ VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+
Sbjct: 769 SDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREH 828
Query: 832 YRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLL 891
YRGGQSFYVCPRL+DLE + FLQS+VPELK+A+AHGQM LED MNAFYEG+YDVLL
Sbjct: 829 YRGGQSFYVCPRLADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLL 888
Query: 892 STSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAA 951
ST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA A
Sbjct: 889 STTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATA 948
Query: 952 QKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASI 1011
++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +
Sbjct: 949 ERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEV 1008
Query: 1012 KGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDR 1071
KG ++ ++ WSPQ+ + +VMIPE YV D++LR++LYRRLG IT+ +I F EM+DR
Sbjct: 1009 KGVDEIHDTGWSPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDR 1068
Query: 1072 FGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKG 1131
FGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP L+ YI +Q
Sbjct: 1069 FGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGT 1128
Query: 1132 KIIIRPDQNLVFDCLLPTINQRFFEAKRIITHL 1164
IRPD +L LPT +R A I+T L
Sbjct: 1129 MAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQL 1161