BLAST/PSIBLAST alignment of GI: 254780947 and GI: 116252138 at iteration 1
>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] Length = 1166
>gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium leguminosarum bv. viciae 3841] Length = 1166
 Score = 1305 bits (3376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1173 (54%), Positives = 841/1173 (71%), Gaps = 21/1173 (1%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D ++++    + +T+  V  G E  +LAE+AR G  + Y+ SD   + +L+++L 
Sbjct: 1    MIPGFDAKKLA-AIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLG 59

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  PAWDCLPYDRVSPS     RRL+ +  L++        IVL T +A++ 
Sbjct: 60   FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            +      I+    S +  +Q+ M  +  +LE NGF+RV  V +VGEYAVRGGILDV+ P 
Sbjct: 120  KVAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPG 179

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
             + PVRLDFFG+T++S+R FD ++QRTI ++   ++N +SEV LT   ISRFR+NYL+ F
Sbjct: 180  SEEPVRLDFFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAF 239

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F I+ D  V+E A +RS+
Sbjct: 240  GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSK 299

Query: 301  LIQDYYEARLQYSSDKK---QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQE 357
            L+ DYY+ARL      K   Q + YKP+ P +LYL+ + F   +      ++++ FN+ E
Sbjct: 300  LVLDYYDARLNSGQPAKGMTQGTPYKPVTPGQLYLDSKLFAKTLDALGA-IRISPFNEHE 358

Query: 358  TAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGIKT 411
                RVV+++A  G+ W         ++ N E GG       FD  + H+A +   G K 
Sbjct: 359  GEARRVVNVDARQGQRW---------ARANAEGGGDAERINIFDVVVKHIADRRAAGAKV 409

Query: 412  IISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMIL 471
            +++A ++G+L+ L+ ++  HG +K+K I  L ++ SL + E AA +L +  GFE   +++
Sbjct: 410  LVTAWTEGSLERLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDLVV 469

Query: 472  VTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTF 531
            + E D+LG ++ RR  R+K   A    + + ++EG+I+VHAEHGIGRF+ L +IE +G  
Sbjct: 470  IGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAP 528

Query: 532  HDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQ 591
            H CLEL YAD AKLF+PVENIDL+SRY  E T   LDKLGG AW+ RKA LKKRL D+A 
Sbjct: 529  HACLELQYADEAKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMAD 588

Query: 592  KLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLI 651
             L+ IAA+R     P L   + LY +F  RFP+ ETEDQE AI+AV  DL +GR MDRL+
Sbjct: 589  ALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDRLV 648

Query: 652  CGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRF 711
            CGDVGFGKTE+ALRAAF+A MNG QVA++ PTTLL RQHF+ FS+RF+G  VRI   SR 
Sbjct: 649  CGDVGFGKTEVALRAAFVAAMNGAQVAIVVPTTLLSRQHFKTFSDRFRGLPVRIQQASRL 708

Query: 712  VQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETH 771
            V  KE AL KK + EG+ DIV+GTHALL   I FANLGL++IDEEQHFGVKHKE LKE  
Sbjct: 709  VGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELK 768

Query: 772  TGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREY 831
            + VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+
Sbjct: 769  SDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREH 828

Query: 832  YRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLL 891
            YRGGQSFYVCPRL+DLE  + FLQS+VPELK+A+AHGQM    LED MNAFYEG+YDVLL
Sbjct: 829  YRGGQSFYVCPRLADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLL 888

Query: 892  STSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAA 951
            ST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA A
Sbjct: 889  STTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATA 948

Query: 952  QKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASI 1011
            ++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +
Sbjct: 949  ERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEV 1008

Query: 1012 KGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDR 1071
            KG  ++ ++ WSPQ+ +  +VMIPE YV D++LR++LYRRLG IT+  +I  F  EM+DR
Sbjct: 1009 KGVDEIHDTGWSPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDR 1068

Query: 1072 FGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKG 1131
            FGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP  L+ YI +Q  
Sbjct: 1069 FGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGT 1128

Query: 1132 KIIIRPDQNLVFDCLLPTINQRFFEAKRIITHL 1164
               IRPD +L     LPT  +R   A  I+T L
Sbjct: 1129 MAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQL 1161