BLAST/PSIBLAST alignment of GI: 254780947 and GI: 15965404 at iteration 1
>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] Length = 1171
>gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] Length = 1171
Score = 1318 bits (3411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1173 (54%), Positives = 837/1173 (71%), Gaps = 10/1173 (0%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D +I ++IT+ PV G E +LAE+AR G + YI SD + + +L+++L
Sbjct: 3 MIPGFDPRKILAA-TREITIGPVPTGAEALVLAELARAGAPVAYILSDGQKVADLEQVLG 61
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ P WDCLPYDRVSPS RRL+ +S L++ IVL T++A +
Sbjct: 62 FVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQ 121
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
R I+ + + +QI M + +LE NGF+RV V ++GE+AVRGGILDVY P
Sbjct: 122 RISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPG 181
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
P+RLDFFG+T++++R FD ++QRTI ++ ++N +SEV LT + IS FR+ YL+ F
Sbjct: 182 SGEPLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLF 241
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G T++D LY A+S+GRRY GMEHWLP FY +ET+F YL F I+TD L +E A +RS+
Sbjct: 242 GAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSK 301
Query: 301 LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
L+ DYY+ARL +S K Q + YKP+ P+ LYL + F + + V+++ F +
Sbjct: 302 LVLDYYDARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNA-VRLSPFTEH 360
Query: 357 ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISAS 416
E +VV++ A G W A E+ ++ FD+ + H+A++ KG K I+S
Sbjct: 361 EGEARQVVNIEARQGLRWAKPAG---EADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGW 417
Query: 417 SQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD 476
++G+L L+ ++ HG I+ + L++I SL E A+ +L + GFET ++++ E D
Sbjct: 418 TEGSLDRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQD 477
Query: 477 LLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536
+LG ++ RR R+K A + + ++EG+ +VHAEHGIGRFV L +IE +G HDCLE
Sbjct: 478 ILGDRLVRRSKRRKR-GADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE 536
Query: 537 LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI 596
L YAD+AKLF+PVENI+L+SRY +E T LDKLGG AW+ RKA LKKRL D+A L+ I
Sbjct: 537 LVYADDAKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRI 596
Query: 597 AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656
AA+R P L +Y +F RFP+ ETEDQ +IDAV DL GR MDRL+CGDVG
Sbjct: 597 AAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVG 656
Query: 657 FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716
FGKTE+ALRAAFIA MNG+QVAV+ PTTLL RQHF+ FS+RF+G +RI SR V +K+
Sbjct: 657 FGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKD 716
Query: 717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776
AL KK + EG+ DIV+GTHALL I FANLGL+IIDEEQHFGVKHKE LKE T VHV
Sbjct: 717 LALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHV 776
Query: 777 LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQ 836
LTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+YRGGQ
Sbjct: 777 LTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQ 836
Query: 837 SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
SFYVCPR+SDL + + FL+S+VPELK+A+AHGQM LED MNAFYEG+YDVLLST+IV
Sbjct: 837 SFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV 896
Query: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR 956
ESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT A++RL+
Sbjct: 897 ESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK 956
Query: 957 ILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKD 1016
+LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +KG+++
Sbjct: 957 VLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEE 1016
Query: 1017 LVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLP 1076
+ ++ WSPQ+ + VMIPE YV D+NLRL LYRRLG +TD +I F E++DRFGPLP
Sbjct: 1017 IHDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP 1076
Query: 1077 IEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIR 1136
EV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP AL+ YIA+Q IR
Sbjct: 1077 TEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIR 1136
Query: 1137 PDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
PDQ++ F L T +R A ++T L +
Sbjct: 1137 PDQSIFFQRELATPEKRLSGAAMVMTQLAALAK 1169