BLAST/PSIBLAST alignment of GI: 254780947 and GI: 227822023 at iteration 1
>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] Length = 1170
>gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] Length = 1170
Score = 1314 bits (3400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/1173 (54%), Positives = 838/1173 (71%), Gaps = 9/1173 (0%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D ++I +++T+ PV G E ILA++AR G + Y SD + + +L+++L
Sbjct: 1 MIPGLDSKKIFAS-AREVTIGPVPSGAEALILADLARAGAPVAYFLSDGQRIADLEQVLG 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ P WDCLPYDRVSPS RRL+ +S L++ IVL TV+A +
Sbjct: 60 FVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNAALQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
+ I+ S + +Q+ M + +LE NGF+RV V +VGE+AVRGGILDVY P
Sbjct: 120 KISPQDVIESLAFSARPGNQVRMDDLAAQLERNGFERVPTVREVGEFAVRGGILDVYVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
P+RLDFFG+T++++R FD ++QRT ++ ++N +SEV LT + IS FR+ YL+ F
Sbjct: 180 SGEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G T++D LY A+S+GRRY GMEHWLP FY +ETIF YL F I+TD L +E A +RS+
Sbjct: 240 GAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAERSK 299
Query: 301 LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
LI DYYEAR +S K Q + YKP+ PE LYL+ Q F A + H V+++ F++
Sbjct: 300 LILDYYEARHASASPSKSQISQGTPYKPVPPELLYLSAQGFSAGLTERHA-VRLSPFSEH 358
Query: 357 ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISAS 416
E +V+ + A G W +A + E + FD+ + H+A++ KG K +IS
Sbjct: 359 EGEARQVMTVEARQGVRWAKTAGETEEG--DGARANVFDQAVKHIAERRAKGAKVVISGW 416
Query: 417 SQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD 476
++G+L L+ ++ HG I+ + L ++ SL E A+ +L + GFET ++++ E D
Sbjct: 417 TEGSLDRLLQVLAEHGLANIRPVKALADLRSLKPGEAASAVLSLESGFETGDLVVIGEQD 476
Query: 477 LLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536
+LG ++ RR R+K A + + ++EG+ +VHAEHGIGRFV L +IE +G HDCLE
Sbjct: 477 ILGDRMVRRSKRRKR-GADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE 535
Query: 537 LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI 596
L YA++AKLF+PVENI+L+SRY +E T LDKLGG AW+ RKA LKKRL D+A L+ I
Sbjct: 536 LVYAEDAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRI 595
Query: 597 AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656
AA+R P L+ +Y +F RFP+ ETEDQ +I+AV DL GR MDRL+CGDVG
Sbjct: 596 AAERHTRHAPALVAQDGVYDEFAARFPYEETEDQLNSIEAVRDDLGGGRPMDRLVCGDVG 655
Query: 657 FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716
FGKTE+ALRAAFIA MNG+QVAV+ PTTLL RQHF+ FS+RF+G +RI SR V +K+
Sbjct: 656 FGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKD 715
Query: 717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776
AL KK + +G+ DIV+GTHALL I FANLGL+IIDEEQHFGVKHKE LKE T VHV
Sbjct: 716 LALTKKEVADGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHV 775
Query: 777 LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQ 836
LTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+YRGGQ
Sbjct: 776 LTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQ 835
Query: 837 SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
SFYVCPRLSDL + + FL+S+VPELK+A+AHGQM LED MNAFYEG+YDVLLST+IV
Sbjct: 836 SFYVCPRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV 895
Query: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR 956
ESGLD+P ANT++V RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT A++RL+
Sbjct: 896 ESGLDVPTANTLVVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK 955
Query: 957 ILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKD 1016
+LQSL+TLGAGFQLAS+DLDIRG GNLLG EQSGHI+E+GFELYQ+MLEE VA +KG+++
Sbjct: 956 VLQSLDTLGAGFQLASHDLDIRGAGNLLGGEQSGHIKEVGFELYQQMLEEAVAELKGEEE 1015
Query: 1017 LVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLP 1076
+ ++ WSPQ+ + VMIPE YV D+NLRL LYRRLG +TD +I F E++DRFGPLP
Sbjct: 1016 IHDTGWSPQISVGTPVMIPEHYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP 1075
Query: 1077 IEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIR 1136
IEV HLLK+V++K LCR AN++K+D G KG+++QFR++ F NP AL+ +IA+Q IR
Sbjct: 1076 IEVQHLLKIVYIKALCRTANVEKLDAGPKGVVVQFRNREFPNPAALVGHIAKQGTLAKIR 1135
Query: 1137 PDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
PDQ++ F L T ++R A ++T L +
Sbjct: 1136 PDQSIFFQRELATPDKRLSGAAMVMTQLATLAK 1168