BLAST/PSIBLAST alignment of GI: 254780947 and GI: 86357714 at iteration 1
>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] Length = 1167
>gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] Length = 1167
 Score = 1306 bits (3380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1179 (54%), Positives = 841/1179 (71%), Gaps = 22/1179 (1%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D ++++    + +T+  V  G E  +LAE+AR G  + Y+ SD   + +L+++L 
Sbjct: 1    MIPGFDAKKLA-AVAEPLTIGNVPTGLEPLLLAELARAGEPVAYVMSDGHRMADLEQMLG 59

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  PAWDCLPYDRVSPS     RRL+ +  L++        IVL T +A++ 
Sbjct: 60   FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            +      I+    S +  +Q+ M  +  +LE NGF RV  V +VGEYAVRGGILDV+ P 
Sbjct: 120  KVAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPG 179

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
             + PVRLDFFG+T++S+R FD ++QRT  ++   ++N +SEV LT   ISRFR+NYL+ F
Sbjct: 180  SEEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAF 239

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F ++TD  V+E A +RS+
Sbjct: 240  GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSK 299

Query: 301  LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
            L+ DYY+ARL      K    Q + YKP+ P +LYL+ + F   +      ++++ FN+ 
Sbjct: 300  LVLDYYDARLNSGQPAKGQMAQGTPYKPVTPGQLYLDSKHFTKTLDALGA-IRISPFNEH 358

Query: 357  ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGIK 410
            E    RV++++A  G+ W         ++ N E GG       FD  + H+A +   G K
Sbjct: 359  EGEARRVINVDARQGQRW---------ARSNAEGGGDAERVNIFDIVVKHIADRRAAGAK 409

Query: 411  TIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMI 470
             +++A ++G+L+ L+ ++  HG +K+K +  L +I SL K E AA +L +  GFE   ++
Sbjct: 410  VLVTAWTEGSLERLLQVLNEHGLEKVKPVEALKDIRSLEKGEAAAAVLNLESGFEAGELV 469

Query: 471  LVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGT 530
            ++ E D+LG ++ RR  R+K   A    + + ++EG+I+VHAEHGIGRF+ L +IE +G 
Sbjct: 470  VIGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGA 528

Query: 531  FHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLA 590
             H CLEL YAD AKLF+PVENIDL+SRY  E T   LDKLGG AW+ RKA LKKRL D+A
Sbjct: 529  PHACLELQYADEAKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMA 588

Query: 591  QKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRL 650
              L+ IAA+R     P L     LY +F  RFP+ ETEDQ+ AI+AV  DL +GR MDRL
Sbjct: 589  DALIRIAAERLTRHAPVLTTPDGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRL 648

Query: 651  ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISR 710
            +CGDVGFGKTE+ALRAAF+A MNG+QVAV+ PTTLL RQHF+ FSERF+G  VR+   SR
Sbjct: 649  VCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASR 708

Query: 711  FVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKET 770
             V  K+ AL KK + +G+ DIV+GTHALL   I FANLGL+IIDEEQHFGVKHKE LKE 
Sbjct: 709  LVGAKDLALTKKEVADGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKEL 768

Query: 771  HTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE 830
             + VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE
Sbjct: 769  KSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMRE 828

Query: 831  YYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVL 890
            +YRGGQSFYVCPRL+DL   + FLQS+VPELK+A+AHGQM    LED MNAFYEG+YDVL
Sbjct: 829  HYRGGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVL 888

Query: 891  LSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAA 950
            LST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA 
Sbjct: 889  LSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTAT 948

Query: 951  AQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVAS 1010
            A++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA 
Sbjct: 949  AERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAE 1008

Query: 1011 IKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVD 1070
            +KG  ++ ++ WSPQ+ +  +VMIPE+YV D++LR++LYRRLG ITD  +I  F  EM+D
Sbjct: 1009 VKGVDEIHDTGWSPQISVGTTVMIPENYVPDLHLRMALYRRLGEITDLKEIDGFGAEMID 1068

Query: 1071 RFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQK 1130
            RFGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP  L+ YI +Q 
Sbjct: 1069 RFGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQG 1128

Query: 1131 GKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
                IRPD +L     LPT  +R   A  I+T L  M  
Sbjct: 1129 TMAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQLAEMAK 1167