BLAST/PSIBLAST alignment of GI: 254780947 and GI: 86357714 at iteration 1
>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] Length = 1167
>gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli CFN 42] Length = 1167
Score = 1306 bits (3380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 639/1179 (54%), Positives = 841/1179 (71%), Gaps = 22/1179 (1%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D ++++ + +T+ V G E +LAE+AR G + Y+ SD + +L+++L
Sbjct: 1 MIPGFDAKKLA-AVAEPLTIGNVPTGLEPLLLAELARAGEPVAYVMSDGHRMADLEQMLG 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ PAWDCLPYDRVSPS RRL+ + L++ IVL T +A++
Sbjct: 60 FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
+ I+ S + +Q+ M + +LE NGF RV V +VGEYAVRGGILDV+ P
Sbjct: 120 KVAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
+ PVRLDFFG+T++S+R FD ++QRT ++ ++N +SEV LT ISRFR+NYL+ F
Sbjct: 180 SEEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F ++TD V+E A +RS+
Sbjct: 240 GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSK 299
Query: 301 LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
L+ DYY+ARL K Q + YKP+ P +LYL+ + F + ++++ FN+
Sbjct: 300 LVLDYYDARLNSGQPAKGQMAQGTPYKPVTPGQLYLDSKHFTKTLDALGA-IRISPFNEH 358
Query: 357 ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGIK 410
E RV++++A G+ W ++ N E GG FD + H+A + G K
Sbjct: 359 EGEARRVINVDARQGQRW---------ARSNAEGGGDAERVNIFDIVVKHIADRRAAGAK 409
Query: 411 TIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMI 470
+++A ++G+L+ L+ ++ HG +K+K + L +I SL K E AA +L + GFE ++
Sbjct: 410 VLVTAWTEGSLERLLQVLNEHGLEKVKPVEALKDIRSLEKGEAAAAVLNLESGFEAGELV 469
Query: 471 LVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGT 530
++ E D+LG ++ RR R+K A + + ++EG+I+VHAEHGIGRF+ L +IE +G
Sbjct: 470 VIGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGA 528
Query: 531 FHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLA 590
H CLEL YAD AKLF+PVENIDL+SRY E T LDKLGG AW+ RKA LKKRL D+A
Sbjct: 529 PHACLELQYADEAKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMA 588
Query: 591 QKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRL 650
L+ IAA+R P L LY +F RFP+ ETEDQ+ AI+AV DL +GR MDRL
Sbjct: 589 DALIRIAAERLTRHAPVLTTPDGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRL 648
Query: 651 ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISR 710
+CGDVGFGKTE+ALRAAF+A MNG+QVAV+ PTTLL RQHF+ FSERF+G VR+ SR
Sbjct: 649 VCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASR 708
Query: 711 FVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKET 770
V K+ AL KK + +G+ DIV+GTHALL I FANLGL+IIDEEQHFGVKHKE LKE
Sbjct: 709 LVGAKDLALTKKEVADGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKEL 768
Query: 771 HTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE 830
+ VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE
Sbjct: 769 KSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMRE 828
Query: 831 YYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVL 890
+YRGGQSFYVCPRL+DL + FLQS+VPELK+A+AHGQM LED MNAFYEG+YDVL
Sbjct: 829 HYRGGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVL 888
Query: 891 LSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAA 950
LST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA
Sbjct: 889 LSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTAT 948
Query: 951 AQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVAS 1010
A++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA
Sbjct: 949 AERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAE 1008
Query: 1011 IKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVD 1070
+KG ++ ++ WSPQ+ + +VMIPE+YV D++LR++LYRRLG ITD +I F EM+D
Sbjct: 1009 VKGVDEIHDTGWSPQISVGTTVMIPENYVPDLHLRMALYRRLGEITDLKEIDGFGAEMID 1068
Query: 1071 RFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQK 1130
RFGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP L+ YI +Q
Sbjct: 1069 RFGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQG 1128
Query: 1131 GKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
IRPD +L LPT +R A I+T L M
Sbjct: 1129 TMAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQLAEMAK 1167