RPSBLAST alignment for GI: 254780947 and conserved domain: TIGR01587
>gnl|CDD|162437 TIGR01587, cas3_core, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. Length = 358
Score = 44.4 bits (105), Expect = 2e-04
Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 49/317 (15%)
Query: 656 GFGKTEIALRAAFIAVMNGLQVAVI--APTTLLVRQHFRLFSERFQGFSVRIASISRFVQ 713
G+GKTE AL A ++ + VI PT + +R E F + S S F +
Sbjct: 9 GYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKR 68
Query: 714 TKE------------------AALHKKSITEGQVDIVIG--THALLNPKITFANLG--LI 751
KE L IT +D V+ + + T A++ L+
Sbjct: 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLL 128
Query: 752 IIDEEQHFG-------VKHKEALKETHTGVHVLTLSATPIP---RTLQLAITGVRELSLI 801
I DE + + E LK+ V +L +SAT +P + I V +
Sbjct: 129 IFDEVHFYDEYTLALILAVLEVLKDN--DVPILLMSAT-LPKFLKEYAEKIGYVEFNEPL 185
Query: 802 SMPPINRIACRTSISIFDPLVVRET----LMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857
+ R I I V + L+ +GG+ + + ++ Y L+
Sbjct: 186 DLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN 245
Query: 858 VPELKIAMAHGQMSPKNLEDK----MNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA 913
PE +I + H + + K+ K + + + V+++T ++E+ LD+ A+ MI + A
Sbjct: 246 APEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-SADVMITELA 304
Query: 914 DMFGLAQLYQLRGRVGR 930
+ L Q GR+ R
Sbjct: 305 P---IDSLIQRLGRLHR 318