RPSBLAST alignment for GI: 254780947 and conserved domain: TIGR01587

>gnl|CDD|162437 TIGR01587, cas3_core, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. Length = 358
 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 49/317 (15%)

Query: 656 GFGKTEIALRAAFIAVMNGLQVAVI--APTTLLVRQHFRLFSERFQGFSVRIASISRFVQ 713
           G+GKTE AL  A  ++ +     VI   PT   +   +R   E F      + S S F +
Sbjct: 9   GYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKR 68

Query: 714 TKE------------------AALHKKSITEGQVDIVIG--THALLNPKITFANLG--LI 751
            KE                    L    IT   +D V+        + + T A++   L+
Sbjct: 69  IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLL 128

Query: 752 IIDEEQHFG-------VKHKEALKETHTGVHVLTLSATPIP---RTLQLAITGVRELSLI 801
           I DE   +        +   E LK+    V +L +SAT +P   +     I  V     +
Sbjct: 129 IFDEVHFYDEYTLALILAVLEVLKDN--DVPILLMSAT-LPKFLKEYAEKIGYVEFNEPL 185

Query: 802 SMPPINRIACRTSISIFDPLVVRET----LMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857
            +    R      I I    V   +    L+    +GG+   +   +   ++ Y  L+  
Sbjct: 186 DLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN 245

Query: 858 VPELKIAMAHGQMSPKNLEDK----MNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA 913
            PE +I + H + + K+   K    +    + +  V+++T ++E+ LD+  A+ MI + A
Sbjct: 246 APEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-SADVMITELA 304

Query: 914 DMFGLAQLYQLRGRVGR 930
               +  L Q  GR+ R
Sbjct: 305 P---IDSLIQRLGRLHR 318