RPSBLAST alignment for GI: 254780947 and conserved domain: KOG0338

>gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helicase [RNA processing and modification]. Length = 691

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 36/258 (13%)

Query: 676 QVAVIAPTTLLVRQHFRLFSE--RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVI 733
           +V V+ PT  L  Q   +  +  +F   +V +A     ++ +EA L  +       DIVI
Sbjct: 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP------DIVI 307

Query: 734 GT------HALLNPKITFANLGLIIIDE-----EQHFGVKHKEALKETHTGVHVLTLSAT 782
            T      H   +P     ++ ++++DE     E+ F  +  E ++        +  SAT
Sbjct: 308 ATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSAT 367

Query: 783 PIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCP 842
                  LA   + +   I + P    A + +        +R    RE  R      +  
Sbjct: 368 MTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEF-----IRIRPKREGDREAMLASLIT 422

Query: 843 RLSDLEKCYTFLQSE-----------VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLL 891
           R    ++   F++++           +  LK    HG ++ +   + +  F + + DVL+
Sbjct: 423 RT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481

Query: 892 STSIVESGLDLPKANTMI 909
           +T +   GLD+    T+I
Sbjct: 482 ATDVASRGLDIEGVQTVI 499