HHsearch alignment for GI: 254780948 and conserved domain: TIGR00613
>TIGR00613 reco DNA repair protein RecO; InterPro: IPR003717 The damage avoidance-tolerance pathway(s) requires functional recA, recF, recO, and recR genes, suggesting the mechanism to be daughter strand gap repair. The ruvABC genes or the recG gene is also required. The RecG pathway appears to be more active than the RuvABC pathway . RecO may contain a mononucleotide-binding fold .; GO: 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=7.8e-43 Score=281.11 Aligned_cols=233 Identities=26% Similarity=0.360 Sum_probs=199.0
Q ss_pred EEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCC--CCCCCCCCEEEEEEECCC--CCCCCCCHHHHHCCCC
Q ss_conf 000169983035880244754227212869999966767553--200034431479982157--7765431012210142
Q gi|254780948|r 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL--AQNLGEFRFEVLESHC 78 (240)
Q Consensus 3 ~~d~giVL~~~~~~E~~~Iv~~~T~~~G~~~~i~rG~~~~k~--~~~lq~~~~~~~~~~~k~--~~~l~~~~~e~~~~~~ 78 (240)
T Consensus 1 ~~~~GivL~~~dy~E~d~iit~ft~~~Gk~~~~akGark~k~r~~~~~~pf~~~~f~~~~~~Nl~~l~~l~~~e~~~~~~ 80 (250)
T TIGR00613 1 IKIEGIVLKSRDYGETDKIITLFTEEYGKVSFVAKGARKSKSRFKAVLQPFSLGDFVLYKRKNLSGLSTLNQGELIKSFE 80 (250)
T ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEECCCCCCHHHHHCEEEEEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 96324685026887255247760467871668887300155641455512033568887524422136431004788778
Q ss_pred HHHCCCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
Q ss_conf 2210440589999-999999996213566767899999999961223-43013799999999998376766122102355
Q gi|254780948|r 79 AKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156 (240)
Q Consensus 79 ~~~~~~~~~l~~~-~~~~~l~~~l~e~e~~~~lf~~l~~~L~~l~~~-~~~~~~~~~fEl~LL~~lGf~p~L~~C~~cg~ 156 (240)
T Consensus 81 ~i~~D~~~~~ya~~y~~eL~~~~~~e~~~~~~lf~~l~~~L~~i~~~~~~~~~~~~~f~l~LL~~~G~~~~l~~C~~Cg~ 160 (250)
T TIGR00613 81 GIKSDLFLLAYASKYIAELIDRLLPEKEPNPKLFELLLKTLELIEEGSGNPELLLRLFELKLLKILGYALDLDKCAVCGS 160 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 87763889999999999999986322775778999999999873133540478999999999998454435660004775
Q ss_pred --CCCCEEEEECCCCHHHHCCC------CCCCCHHHHHHHHHHCCC-CCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --56622443012100111024------753200001234552256-78998-999999989999998565662899999
Q gi|254780948|r 157 --TQDLLWVSPKSGGAVCRSVG------LPYAEKMLVLPSFLWKEE-QTIDA-DSLKSAFQLTDYFLNKYALQHNIIHCH 226 (240)
Q Consensus 157 --~~~l~~~s~~~g~av~~~~~------~~~~~kll~lp~fL~~~~-~~~~~-~~i~~~l~lt~~fL~k~~l~~~~~~~P 226 (240)
T Consensus 161 ~~~~~~~~~S~~~~g~~C~~~~~~d~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (250)
T TIGR00613 161 ELKEDLIYFSMKYGGALCKQCGEKDPHAIPLKPKLLRLLRYLLKLDLEKLLSIIELKPEIKLELRRILDEYYEEYLGDKP 240 (250)
T ss_pred CCCCCHHHHHHHCCCEECHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34453343200026422002101452001146789999999865468887556405888999999999999876516744
Q ss_pred HHHHHHHHH
Q ss_conf 879999999
Q gi|254780948|r 227 LLRENFLGK 235 (240)
Q Consensus 227 ~sR~~f~~~ 235 (240)
T Consensus 241 ~kS~~~l~~ 249 (250)
T TIGR00613 241 LKSKKFLDQ 249 (250)
T ss_pred HHHHHHHHH
T ss_conf 237999862