HHsearch alignment for GI: 254780948 and conserved domain: pfam02565
>pfam02565 RecO_C Recombination protein O C terminal. Recombination protein O (RecO) is involved in DNA repair and pfam00470 pathway recombination.
Probab=99.60 E-value=2.5e-14 Score=106.99 Aligned_cols=135 Identities=28% Similarity=0.414 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCE
Q ss_conf 4405899999999999-962135667678999999999612234301379999999999837676612210235556622
Q gi|254780948|r 83 SSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL 161 (240)
Q Consensus 83 ~~~~~l~~~~~~~~l~-~~l~e~e~~~~lf~~l~~~L~~l~~~~~~~~~~~~fEl~LL~~lGf~p~L~~C~~cg~~~~l~ 161 (240)
T Consensus 2 ~d~~~l~~a~yl~El~~~~~~e~~p~~~lf~ll~~~L~~L~~~~~~~~~~~~Fel~lL~~lG~~P~l~~C~~cg~~~~~~ 81 (156)
T pfam02565 2 LDLERLAAASYINELLDRLLPEEEPNPELFDLLLQALEALDEGDDPELLLLRFELKLLAELGYAPDLDRCAVCGAPEPLA 81 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999999999999980468998999999999999987589769999999999999839982623003679847875
Q ss_pred EEEECCCCH-HH----HCCCCCCCCHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 443012100-11----102475320000123455225------678998999999989999998565
Q gi|254780948|r 162 WVSPKSGGA-VC----RSVGLPYAEKMLVLPSFLWKE------EQTIDADSLKSAFQLTDYFLNKYA 217 (240)
Q Consensus 162 ~~s~~~g~a-v~----~~~~~~~~~kll~lp~fL~~~------~~~~~~~~i~~~l~lt~~fL~k~~ 217 (240)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~hl 148 (156)
T pfam02565 82 AFSPKAGALCSGCAVSDPAALPLSPETLALLALLLLGDLDKLGEIRVSPETLRELKRLLRAYLDEHL 148 (156)
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 3232278654343567877777599999999999668999986167999999999999999999985