Query gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 240
No_of_seqs 191 out of 1615
Neff 8.4
Searched_HMMs 33803
Date Wed Jun 1 20:24:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780948.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1u5k_A Hypothetical protein; 99.7 2.6E-17 7.6E-22 124.9 10.6 142 83-230 2-152 (162)
2 >1u5k_A Hypothetical protein; 99.6 2.1E-16 6.2E-21 119.3 4.4 77 1-78 3-81 (82)
3 >2iqj_A Stromal membrane-assoc 88.8 0.5 1.5E-05 25.4 3.7 95 137-235 16-118 (134)
4 >2crr_A Stromal membrane-assoc 85.6 1.5 4.4E-05 22.5 4.6 93 139-235 20-120 (141)
5 >2owa_A Arfgap-like finger dom 84.3 0.72 2.1E-05 24.4 2.6 95 137-235 25-126 (138)
6 >2crw_A ARF GAP 3, ADP-ribosyl 80.3 0.74 2.2E-05 24.4 1.4 86 136-223 17-103 (149)
7 >2p57_A GTPase-activating prot 79.0 1.5 4.5E-05 22.4 2.7 85 137-224 26-112 (144)
8 >2olm_A Nucleoporin-like prote 78.6 2.4 7E-05 21.3 3.5 78 137-218 14-92 (140)
9 >3dwd_A ADP-ribosylation facto 77.0 1.8 5.3E-05 22.0 2.6 83 136-222 26-110 (147)
10 >3feh_A Centaurin-alpha-1; str 67.9 3.5 0.0001 20.2 2.3 79 137-219 23-102 (109)
11 >4gat_A Nitrogen regulatory pr 45.1 5.2 0.00015 19.2 0.0 46 147-192 8-53 (66)
12 >2vut_I AREA, nitrogen regulat 42.9 3.4 0.0001 20.3 -1.2 38 149-186 2-39 (43)
13 >1gnf_A Transcription factor G 42.4 4 0.00012 19.9 -0.9 38 148-185 4-41 (46)
14 >3dfx_A Trans-acting T-cell-sp 37.9 7 0.00021 18.4 -0.3 45 149-193 8-52 (63)
15 >3k1f_M Transcription initiati 35.9 19 0.00057 15.7 1.7 39 144-182 14-55 (57)
16 >2do8_A UPF0301 protein HD_179 22.3 33 0.00098 14.3 1.0 18 4-21 1-20 (50)
17 >2kae_A GATA-type transcriptio 21.6 14 0.00042 16.5 -1.0 43 148-190 8-51 (71)
18 >3ecs_A Translation initiation 21.2 48 0.0014 13.3 3.0 81 71-151 4-89 (105)
19 >1dl6_A Transcription factor I 21.1 35 0.001 14.1 0.9 34 149-184 12-45 (58)
20 >1pft_A TFIIB, PFTFIIBN; N-ter 20.8 40 0.0012 13.8 1.1 35 148-184 5-39 (50)
No 1
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244)
Probab=99.73 E-value=2.6e-17 Score=124.87 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCE
Q ss_conf 4405899999999999-962135667678999999999612234301379999999999837676612210235556622
Q gi|254780948|r 83 SSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL 161 (240)
Q Consensus 83 ~~~~~l~~~~~~~~l~-~~l~e~e~~~~lf~~l~~~L~~l~~~~~~~~~~~~fEl~LL~~lGf~p~L~~C~~cg~~~~l~ 161 (240)
+|..++++++++++++ +.+++++|++.+|+++..+|+.+++..++....+.||+++|+.+||+|++++|+.||.. +..
T Consensus 2 ~D~~~~~~a~~~~El~~~~~~~~~~~~~lf~ll~~~L~~l~~~~~~~~~~~~f~lklL~~~G~~p~l~~C~~cg~~-~~~ 80 (162)
T 1u5k_A 2 AEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAP-DPE 80 (162)
T ss_dssp GSHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHTTSSSCCCCSBCTTTCCB-SCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC-CCC
T ss_conf 2288999999999999987303784799999999999997358844889999999999977489475667504788-876
Q ss_pred EEEECCCCHHHHCCCCCCC--CHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 4430121001110247532--0000123455225------6789989999999899999985656628999998799
Q gi|254780948|r 162 WVSPKSGGAVCRSVGLPYA--EKMLVLPSFLWKE------EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRE 230 (240)
Q Consensus 162 ~~s~~~g~av~~~~~~~~~--~kll~lp~fL~~~------~~~~~~~~i~~~l~lt~~fL~k~~l~~~~~~~P~sR~ 230 (240)
+||+++||.||..++.... ...+.+-..+... ....+.....+..+++..+++.|+ ...++||.
T Consensus 81 ~fs~~~gg~vc~~c~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~l-----g~~lkS~~ 152 (162)
T 1u5k_A 81 HPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQV-----GGVHSWRQ 152 (162)
T ss_dssp EECTTTSSEECTTTCSSCCCCHHHHHHHHHTTTSCHHHHHHSCCCGGGHHHHHHHHHHHHHHHS-----CSCCGGGG
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-----CCCCCHHH
T ss_conf 0032139045467655688899999999999826998874057999999999999999999996-----88750677
No 2
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:1-82)
Probab=99.62 E-value=2.1e-16 Score=119.32 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=69.4
Q ss_pred CC-EEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCH-HHHHCCCC
Q ss_conf 95-00016998303588024475422721286999996676755320003443147998215777654310-12210142
Q gi|254780948|r 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFR-FEVLESHC 78 (240)
Q Consensus 1 M~-~~d~giVL~~~~~~E~~~Iv~~~T~~~G~~~~i~rG~~~~k~~~~lq~~~~~~~~~~~k~~~~l~~~~-~e~~~~~~ 78 (240)
|. |+++||||+.++|||+|+||++||++ |+++++|||++++|.++.+||+++++++|..+..+.+..++ +|+++++.
T Consensus 3 ~~~~~~~giVL~~~~y~E~d~iv~l~T~~-G~i~~~akG~rksk~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~f~ 81 (82)
T 1u5k_A 3 SRTANRSGIVIRRRVTPAGDIIVTLLTPQ-GKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGALP 81 (82)
T ss_dssp CSEEEEEEEEEEEEECTTSCEEEEEEETT-EEEEEEETTCTTSTTTTTSCTTCEEEEEEECCCC-CCEEEEEEEEEECCG
T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEHHCCCHHHH
T ss_conf 65557727999723548766899998789-84899971566788766515452220799962467605521000010212
No 3
>>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} (A:)
Probab=88.76 E-value=0.5 Score=25.37 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=57.0
Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHH-HHHHCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999983767661221023555662244301210011102475320000123-4552256-78998999999989999998
Q gi|254780948|r 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP-SFLWKEE-QTIDADSLKSAFQLTDYFLN 214 (240)
Q Consensus 137 ~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp-~fL~~~~-~~~~~~~i~~~l~lt~~fL~ 214 (240)
+.|+.+==.|.=..|+.||.. +..|+|...|..||..|+.-+.. |..+ .+...-. ...+.+++. -++-.|.-.-
T Consensus 16 ~~l~~L~~~p~N~~CaDC~~~-~p~w~sl~~GvflC~~Csg~HR~--lg~~is~vkSl~~d~~~~~~i~-~l~~~GN~~~ 91 (134)
T 2iqj_A 16 AVLANLLLEEDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRN--LGVHISRVKSVNLDQWTQEQIQ-CMQEMGNGKA 91 (134)
T ss_dssp HHHHHHTTSGGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHH--HCTTTCCEEETTTSCCCHHHHH-HHHTCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCEEEEECCEEECHHCHHHHHH--CCCCCEEECCCCCCCCCHHHHH-HHHHHHCHHH
T ss_conf 999999708790947899688-99979830788770101062741--6987306556740469999999-9998817999
Q ss_pred HHHH-----HHCCCCCC-HHHHHHHHH
Q ss_conf 5656-----62899999-879999999
Q gi|254780948|r 215 KYAL-----QHNIIHCH-LLRENFLGK 235 (240)
Q Consensus 215 k~~l-----~~~~~~~P-~sR~~f~~~ 235 (240)
+.++ .+...+.| ..|..||..
T Consensus 92 n~~~e~~~~~~~~~~~~~~~~~~fIr~ 118 (134)
T 2iqj_A 92 NRLYEAYLPETFRRPQIDPAVEGFIRD 118 (134)
T ss_dssp HHHHTTTCCSSCCCCCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 999997288123689986589999999
No 4
>>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=85.57 E-value=1.5 Score=22.52 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=54.8
Q ss_pred HHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHH-HHHCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99837676612210235556622443012100111024753200001234-552256-7899899999998999999856
Q gi|254780948|r 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS-FLWKEE-QTIDADSLKSAFQLTDYFLNKY 216 (240)
Q Consensus 139 L~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~-fL~~~~-~~~~~~~i~~~l~lt~~fL~k~ 216 (240)
|+.+==.|.=..|+.||.. +..|+|...|..||..|+.-+. -|.... +...-. ...+..++ .-++-.|.-.-+.
T Consensus 20 l~~L~~~~~N~~CaDCg~~-~p~w~s~~~GvfiC~~Csg~HR--~lg~~~s~vksl~~d~~~~~~i-~~l~~~GN~~~n~ 95 (141)
T 2crr_A 20 LSKLLREEDNKYCADCEAK-GPRWASWNIGVFICIRCAGIHR--NLGVHISRVKSVNLDQWTAEQI-QCMQDMGNTKARL 95 (141)
T ss_dssp HHHHHHSGGGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHH--HHCTTTCCCBCSSSSCCCHHHH-HHHHHTHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCC-CCCEEEECCCEEECHHHHHHHC--CCCCCCEEECCCCCCCCCHHHH-HHHHHHCCHHHHH
T ss_conf 9999718791948899789-9997983179877044437663--6898575755377678999999-9999975799999
Q ss_pred HHH-----HCCCCCC-HHHHHHHHH
Q ss_conf 566-----2899999-879999999
Q gi|254780948|r 217 ALQ-----HNIIHCH-LLRENFLGK 235 (240)
Q Consensus 217 ~l~-----~~~~~~P-~sR~~f~~~ 235 (240)
+++ +...+.+ ..|..||..
T Consensus 96 ~~e~~~~~~~~~~~~~~~~~~fIr~ 120 (141)
T 2crr_A 96 LYEANLPENFRRPQTDQAVEFFIRD 120 (141)
T ss_dssp HGGGSCCTTCCCCCSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9986288456789953899999999
No 5
>>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} (A:)
Probab=84.35 E-value=0.72 Score=24.43 Aligned_cols=95 Identities=8% Similarity=0.108 Sum_probs=55.1
Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHH-HHHHCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999983767661221023555662244301210011102475320000123-4552256-78998999999989999998
Q gi|254780948|r 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP-SFLWKEE-QTIDADSLKSAFQLTDYFLN 214 (240)
Q Consensus 137 ~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp-~fL~~~~-~~~~~~~i~~~l~lt~~fL~ 214 (240)
+.|+.+==.|.=..|+.||.. +..|+|...|..+|..|+.-+.. |... .+...-. ...+..++ ..++..|.---
T Consensus 25 ~~l~~L~~~p~N~~CaDCg~~-~p~w~s~~~GvflC~~CsgiHR~--lg~~is~vkS~~~d~w~~~~i-~~l~~~GN~~~ 100 (138)
T 2owa_A 25 NFFQIVRNRPENRTCFDCESR-NPTWLSLSFAVFICLNCSSDHRK--MGVHISFVRSSDLDKFTPIQL-VRMDIGGNGRA 100 (138)
T ss_dssp HHHHHHHHSGGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHT--TCTTTCCEEETTTSCCCHHHH-HHHHHCCHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCEEEECCCCEECHHCHHHHHH--CCCCCCEEECCCCCCCCHHHH-HHHHHHCCHHH
T ss_conf 999999729998913889989-99978820682673204323765--088775353366677799999-99999774999
Q ss_pred HHHHHHCCCCC-----CHHHHHHHHH
Q ss_conf 56566289999-----9879999999
Q gi|254780948|r 215 KYALQHNIIHC-----HLLRENFLGK 235 (240)
Q Consensus 215 k~~l~~~~~~~-----P~sR~~f~~~ 235 (240)
+.+++.+..+. ...|..||..
T Consensus 101 n~~~e~~~~~~~~~~~~~~~~~fI~~ 126 (138)
T 2owa_A 101 RNYFKQVLGVNFSPKTKEYASSICGR 126 (138)
T ss_dssp HHHHHHHTCTTCCGGGCHHHHSHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999717988999500222589999
No 6
>>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=80.33 E-value=0.74 Score=24.36 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 999998376766122102355566224430121001110247532000012345522567-8998999999989999998
Q gi|254780948|r 136 LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLN 214 (240)
Q Consensus 136 l~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~fL~~~~~-~~~~~~i~~~l~lt~~fL~ 214 (240)
-++|+.+=-.|.=..|+.||.. +..|+|...|..||..|+.-+..---. ..+...... +....+....++..|.=.-
T Consensus 17 ~~~l~~L~~~p~N~~CaDCg~~-~p~w~s~~~GvfiC~~CsgiHR~lg~~-is~v~S~~ld~~~~~~~i~~l~~~GN~~a 94 (149)
T 2crw_A 17 LTIFKRLRSVPTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVH-LSFIRSTELDSNWSWFQLRCMQVGGNASA 94 (149)
T ss_dssp HHHHHHHHHSTTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTT-TCCEECSSSCCCCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCC-CCCEEEECCCEEECCCHHHHHCCCCCC-EEEEEECCCCCCCCHHHHHHHHHHCCHHH
T ss_conf 9999999708898907779899-999798401738736134654158986-21457446788799999999998176999
Q ss_pred HHHHHHCCC
Q ss_conf 565662899
Q gi|254780948|r 215 KYALQHNII 223 (240)
Q Consensus 215 k~~l~~~~~ 223 (240)
+.++..+..
T Consensus 95 n~~~~~~~~ 103 (149)
T 2crw_A 95 SSFFHQHGC 103 (149)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHCCC
T ss_conf 999997389
No 7
>>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} (A:)
Probab=78.99 E-value=1.5 Score=22.45 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=52.4
Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHH-HHHHCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 999983767661221023555662244301210011102475320000123-45522567-8998999999989999998
Q gi|254780948|r 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP-SFLWKEEQ-TIDADSLKSAFQLTDYFLN 214 (240)
Q Consensus 137 ~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp-~fL~~~~~-~~~~~~i~~~l~lt~~fL~ 214 (240)
++|+.+==.|.=..|+.||.. +..|+|...|..||..|+.-+.. |... .+...-.. ..+..++..-++..|.-.-
T Consensus 26 ~~l~~L~~~p~N~~CaDCg~~-~p~w~s~~~GvflC~~CsgiHR~--lg~~is~VkSltld~~~~~e~~~~~~~~GN~~~ 102 (144)
T 2p57_A 26 TLFKRLRAVPTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRS--LGVHLSFIRSTELDSNWNWFQLRCMQVGGNANA 102 (144)
T ss_dssp HHHHHHHHSGGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHH--HCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCC-CCCEEEEECCEEEECHHHHHHCC--CCCCCCEEEECCCCCCCCHHHHHHHHHHCHHHH
T ss_conf 999999708899966789999-99979840584663013687655--898846377134688899999999999873999
Q ss_pred HHHHHHCCCC
Q ss_conf 5656628999
Q gi|254780948|r 215 KYALQHNIIH 224 (240)
Q Consensus 215 k~~l~~~~~~ 224 (240)
+.+++.+...
T Consensus 103 n~~~e~~~~~ 112 (144)
T 2p57_A 103 TAFFRQHGCT 112 (144)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCC
T ss_conf 9999974999
No 8
>>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, HIV, human immunodeficiency virus, AIDS, zinc; 1.48A {Homo sapiens} PDB: 2d9l_A (A:)
Probab=78.59 E-value=2.4 Score=21.27 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998376766122102355566224430121001110247532000012345522567-89989999999899999985
Q gi|254780948|r 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNK 215 (240)
Q Consensus 137 ~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~fL~~~~~-~~~~~~i~~~l~lt~~fL~k 215 (240)
.+|+.+=-.|.=..|+.||.. +..|+|...|..||..|+.-+. .|....+...... ..+..++ ..++..|.=.-+
T Consensus 14 ~~l~~l~~~p~N~~CaDCg~~-~p~w~s~~~GvflC~~Csg~HR--~lg~~s~v~s~~~d~w~~~~i-~~l~~~GN~~an 89 (140)
T 2olm_A 14 KMLRDMTGLPHNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLR--GLNPPHRVKSISMTTFTQQEI-EFLQKHGNEVCK 89 (140)
T ss_dssp HHHHHHHTSGGGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHT--TSSSCCCEEETTTCCCCHHHH-HHHHHCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCEEEEECCEEEECCCCHHHH--HCCCCCEEEECCCCCCCHHHH-HHHHHHCCHHHH
T ss_conf 999999729997905789898-9996995168767120017777--348875455423476799999-999998278999
Q ss_pred HHH
Q ss_conf 656
Q gi|254780948|r 216 YAL 218 (240)
Q Consensus 216 ~~l 218 (240)
.++
T Consensus 90 ~~~ 92 (140)
T 2olm_A 90 QIW 92 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 9
>>3dwd_A ADP-ribosylation factor GTPase-activating protein 1; GAP, structural genomics consortium (SGC), alternative splicing, cytoplasm, ER-golgi transport; 2.40A {Homo sapiens} (A:)
Probab=77.04 E-value=1.8 Score=22.00 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHH-HHHHCCCC-CCCHHHHHHHHHHHHHHH
Q ss_conf 9999983767661221023555662244301210011102475320000123-45522567-899899999998999999
Q gi|254780948|r 136 LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP-SFLWKEEQ-TIDADSLKSAFQLTDYFL 213 (240)
Q Consensus 136 l~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp-~fL~~~~~-~~~~~~i~~~l~lt~~fL 213 (240)
-.+|+.+==.|.=..|+.||.. +..|+|...|..+|..|+.-+. -|... .+...-.. ..+..++ ..++..|.--
T Consensus 26 ~~~l~~L~~~p~N~~CaDCgs~-~p~w~s~n~GvfiC~~CsgvHR--~lg~~is~VkSl~ld~w~~~~i-~~l~~~GN~~ 101 (147)
T 3dwd_A 26 RKVLKEVRVQDENNVCFECGAF-NPQWVSVTYGIWICLECSGRHR--GLGVHLSFVRSVTMDKWKDIEL-EKMKAGGNAK 101 (147)
T ss_dssp HHHHHHHHTSTTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHH--HHCTTTCCEEESCC--CCHHHH-HHHHHCCHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCC-CCCEEEECCCEEECCCCCHHHH--HCCCCCCEEEECCCCCCCHHHH-HHHHHHCCHH
T ss_conf 9999999708890916899799-9997982389888313500153--0698753466588778999999-9999974599
Q ss_pred HHHHHHHCC
Q ss_conf 856566289
Q gi|254780948|r 214 NKYALQHNI 222 (240)
Q Consensus 214 ~k~~l~~~~ 222 (240)
-+.+++.+.
T Consensus 102 ~n~~~e~~~ 110 (147)
T 3dwd_A 102 FREFLESQE 110 (147)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHHCC
T ss_conf 999999658
No 10
>>3feh_A Centaurin-alpha-1; structural genomics consortium, GAP, GTPase activation, SGC, cytoplasm, metal-binding, nucleus, phosphoprotein, polymorphism; 1.90A {Homo sapiens} PDB: 3fm8_C (A:1-109)
Probab=67.88 E-value=3.5 Score=20.21 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998376766122102355566224430121001110247532000012345522567-89989999999899999985
Q gi|254780948|r 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNK 215 (240)
Q Consensus 137 ~LL~~lGf~p~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~fL~~~~~-~~~~~~i~~~l~lt~~fL~k 215 (240)
+.|+.+==.|.=..|+.||.. +..|.|...|..||..++.-+.. +....+...-.. ..+.+++ .-++..|.-.-+
T Consensus 23 ~~l~~l~~~p~N~~CaDC~~~-~p~w~s~~~GvflC~~CsgiHR~--lg~is~vkSi~ld~w~~~~v-~~l~~~GN~~~n 98 (109)
T 3feh_A 23 RAVLELLQRPGNARCADCGAP-DPDWASYTLGVFICLSCSGIHRN--IPQVSKVKSVRLDAWEEAQV-EFMASHGNDAAR 98 (109)
T ss_dssp HHHHHHHTSGGGSBCTTTCCB-SCCEEETTTTEEECHHHHHHHTT--CTTTCCEEETTTSCCCHHHH-HHHHHSCHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCC-CCCEEEEECCEEECCHHHHHHCC--CCCCCCEEECCCCCCCHHHH-HHHHHHCCHHHH
T ss_conf 999999628896956899888-99989950788981001146439--99987006050687999999-999997468889
Q ss_pred HHHH
Q ss_conf 6566
Q gi|254780948|r 216 YALQ 219 (240)
Q Consensus 216 ~~l~ 219 (240)
.+++
T Consensus 99 ~~~e 102 (109)
T 3feh_A 99 ARFE 102 (109)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9987
No 11
>>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} (A:)
Probab=45.08 E-value=5.2 Score=19.17 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=38.2
Q ss_pred CHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHC
Q ss_conf 6122102355566224430121001110247532000012345522
Q gi|254780948|r 147 DLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWK 192 (240)
Q Consensus 147 ~L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~fL~~ 192 (240)
.-..|+.||.++-..|=.-.+|..+|..+|.-|....-..|.-+..
T Consensus 8 ~~~~C~nCgtt~Tp~WRrgp~G~~LCNACGL~~~~~~~~Rp~~~~~ 53 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 53 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8798889899778654318998985446778999708857745566
No 12
>>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} (I:)
Probab=42.91 E-value=3.4 Score=20.32 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=31.9
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHH
Q ss_conf 22102355566224430121001110247532000012
Q gi|254780948|r 149 TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186 (240)
Q Consensus 149 ~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~l 186 (240)
..|+.||.++-..|=...+|..+|..+|.-|....-.-
T Consensus 2 ~~C~nCgtt~Tp~WRrg~~g~~LCNACGl~~~k~~~~R 39 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVR 39 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 81788989688443429998983245658998718988
No 13
>>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} (A:)
Probab=42.43 E-value=4 Score=19.90 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=32.0
Q ss_pred HHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHH
Q ss_conf 12210235556622443012100111024753200001
Q gi|254780948|r 148 LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185 (240)
Q Consensus 148 L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~ 185 (240)
-..|+.||.++-..|=.-.+|+.+|..+|.-|....-.
T Consensus 4 ~~~C~nCgtt~Tp~WR~gp~g~~LCNACGl~~~k~~~~ 41 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 00110367747602121688870255667788851778
No 14
>>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* (A:)
Probab=37.89 E-value=7 Score=18.41 Aligned_cols=45 Identities=31% Similarity=0.511 Sum_probs=38.2
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCC
Q ss_conf 221023555662244301210011102475320000123455225
Q gi|254780948|r 149 TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKE 193 (240)
Q Consensus 149 ~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll~lp~fL~~~ 193 (240)
..|..||.++-..|=.-.+|..+|..+|.-|......-|.-+...
T Consensus 8 ~~C~nCgtt~TP~WRrgp~G~~LCNACGl~~~~~~~~rp~~~~~~ 52 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKE 52 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCS
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 875688986641066889999820136688998488788543546
No 15
>>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} (M:1-57)
Probab=35.85 E-value=19 Score=15.73 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCCHH---HHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCH
Q ss_conf 676612---210235556622443012100111024753200
Q gi|254780948|r 144 FGLDLT---KCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182 (240)
Q Consensus 144 f~p~L~---~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~k 182 (240)
++.+++ .|-.||+.....-..+.+|-.||..+|.-..++
T Consensus 14 ~~~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~~~ 55 (57)
T 3k1f_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (57)
T ss_dssp CSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCC
T ss_pred CCCCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEECCC
T ss_conf 799986446898999989889887988967973589194450
No 16
>>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} (A:80-129)
Probab=22.34 E-value=33 Score=14.27 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.4
Q ss_pred EEEEEEEEECCCC--CHHHH
Q ss_conf 0016998303588--02447
Q gi|254780948|r 4 QDDAIILGVRSYG--EKNII 21 (240)
Q Consensus 4 ~d~giVL~~~~~~--E~~~I 21 (240)
+|.|+|||+-.+. ++++-
T Consensus 1 qeRGFVLHs~~~~~w~ssl~ 20 (50)
T 2do8_A 1 QDRGFIVHSKTDHEFTHSYK 20 (50)
T ss_dssp EEEEEEEECCCTTCCSSEEE
T ss_pred CCCEEEECCCCCCCCCCCEE
T ss_conf 77403440344555664158
No 17
>>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} (A:)
Probab=21.57 E-value=14 Score=16.49 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHCCCCCCCCCEEEEECCC-CHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 122102355566224430121-0011102475320000123455
Q gi|254780948|r 148 LTKCVVTGVTQDLLWVSPKSG-GAVCRSVGLPYAEKMLVLPSFL 190 (240)
Q Consensus 148 L~~C~~cg~~~~l~~~s~~~g-~av~~~~~~~~~~kll~lp~fL 190 (240)
-..|..||.++-..|=.--.| +.+|..+|.-|..+.-..|.-+
T Consensus 8 ~~~C~~Cgtt~TP~WRrgp~G~~~LCNACGl~~~k~~~~rp~~~ 51 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTA 51 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCHH
T ss_conf 69978989988711038998987452266889998388786125
No 18
>>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} (A:1-105)
Probab=21.18 E-value=48 Score=13.26 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=52.0
Q ss_pred HHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHCCC
Q ss_conf 122101422210440589999999999996213--566767899999999961223430137999---999999983767
Q gi|254780948|r 71 FEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHKIPSVIGKIFVQ---IELMLLKNIGFG 145 (240)
Q Consensus 71 ~e~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~e--~e~~~~lf~~l~~~L~~l~~~~~~~~~~~~---fEl~LL~~lGf~ 145 (240)
-+++..+...+.+|+....+.-.+..|..++.. .+...++.+.+....+.|..-+....+.-- |.-.......=.
T Consensus 4 fdiv~~f~~~l~~d~d~s~~iAAI~tL~~~L~~s~a~T~~eL~~~Lk~a~~~Lks~~~sisl~sgceLF~RFVt~~~~~~ 83 (105)
T 3ecs_A 4 KELIEYFKSQXKEDPDXASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISLASLEY 83 (105)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78999999998739860689999999999997198146999999999999998649975662658999999998851342
Q ss_pred CCHHHH
Q ss_conf 661221
Q gi|254780948|r 146 LDLTKC 151 (240)
Q Consensus 146 p~L~~C 151 (240)
.|++.|
T Consensus 84 ~df~~~ 89 (105)
T 3ecs_A 84 SDYSKC 89 (105)
T ss_dssp -----C
T ss_pred CCHHHH
T ss_conf 569999
No 19
>>1dl6_A Transcription factor II B (TFIIB); zinc ribbon; NMR {Homo sapiens} (A:)
Probab=21.12 E-value=35 Score=14.10 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=26.0
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHH
Q ss_conf 221023555662244301210011102475320000
Q gi|254780948|r 149 TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184 (240)
Q Consensus 149 ~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll 184 (240)
..|-.||..+ .-+...+|-.||..+|.-.+++.+
T Consensus 12 ~~Cp~Cg~~~--iv~D~~~Ge~vC~~CG~Vlee~~i 45 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGDMICPECGLVVGDRVI 45 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCCEECTTTCCEECCSCC
T ss_pred CCCCCCCCCC--EEEECCCCEEECCCCCCEECCCCC
T ss_conf 5996997987--778878881852029989333133
No 20
>>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} (A:)
Probab=20.77 E-value=40 Score=13.75 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=26.6
Q ss_pred HHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHH
Q ss_conf 1221023555662244301210011102475320000
Q gi|254780948|r 148 LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184 (240)
Q Consensus 148 L~~C~~cg~~~~l~~~s~~~g~av~~~~~~~~~~kll 184 (240)
-..|-.||.. ..-+...+|-.||..+|.-.+++..
T Consensus 5 ~~~Cp~Cg~~--~iv~D~~~Ge~vC~~CG~Vlee~~i 39 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBCCCCCC
T ss_pred CCCCCCCCCC--CEEEECCCCEEECCCCCCEECCCCC
T ss_conf 5559298798--2788788791851269859243424
Done!