BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780948|ref|YP_003065361.1| DNA repair protein RecO
[Candidatus Liberibacter asiaticus str. psy62]
(240 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|239831498|ref|ZP_04679827.1| DNA repair protein RecO [Ochrobactrum intermedium LMG 3301]
gi|239823765|gb|EEQ95333.1| DNA repair protein RecO [Ochrobactrum intermedium LMG 3301]
Length = 245
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 106/241 (43%), Positives = 152/241 (63%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG R +GE + I+EVMTR++GRH+G VR G+S RMQP+LQ GN V V W +
Sbjct: 3 MEWRDEGIILGTRRHGETSAIVEVMTREHGRHMGMVRGGRSRRMQPLLQPGNHVDVTWWA 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E LE A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 63 RLDEHMGSFTIEPLEFAAARLIETPVALYGIQLAASHLRLLPERDPHRGLYETLRLIIEH 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TGV +DL++VSPKSG AVCR VG P+A
Sbjct: 123 FDDPLASGELVLRFEVMMLEELGFGLDLKECAATGVKEDLIYVSPKSGRAVCREVGAPWA 182
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L+LP F+ + D + AF +T YFL ++ + I R FL L
Sbjct: 183 DKLLLLPGFVNNTAVRAASYDDIDHAFTMTGYFLMRHVWEPRAITPPDARGGFLNALGRA 242
Query: 240 I 240
I
Sbjct: 243 I 243
>gi|153009952|ref|YP_001371167.1| DNA repair protein RecO [Ochrobactrum anthropi ATCC 49188]
gi|151561840|gb|ABS15338.1| DNA repair protein RecO [Ochrobactrum anthropi ATCC 49188]
Length = 243
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 105/241 (43%), Positives = 151/241 (62%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG R +GE + I+EVMTR++GRH+G VR G+S RMQP+LQ GN V V W +
Sbjct: 1 MEWRDEGIILGTRRHGETSAIVEVMTREHGRHMGMVRGGRSRRMQPLLQPGNHVDVTWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E LE A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGSFTIEPLEFAAARLIETPVALYGIQLAASHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL KC TGV +DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLASGELVLRFEVMMLEELGFGLDLKKCAATGVKEDLIYVSPKSGRAVCRDAGAPWA 180
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L+LP F+ + D + AF +T YFL ++ + + R FL L
Sbjct: 181 DKLLLLPGFVNNTAVRASSYDDIDHAFTMTGYFLMRHVWEPRAVTPPDARGGFLNALGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|260462318|ref|ZP_05810526.1| DNA repair protein RecO [Mesorhizobium opportunistum WSM2075]
gi|259031812|gb|EEW33080.1| DNA repair protein RecO [Mesorhizobium opportunistum WSM2075]
Length = 258
Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 151/239 (63%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG R +GE + ILEVMTR +GRHLG VR G+S + QP+LQ GN V + WR+
Sbjct: 1 MEWRDEGIILGTRKHGETSAILEVMTRTHGRHLGLVRGGRSRKQQPVLQPGNRVDLLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E +E + A+L+ S++ +YGLQ++ R LPER+ LY+ L++ +
Sbjct: 61 RLDEHLGTFQAEPIEMNAARLMDSAIAVYGLQTMAAHLRLLPERDAHGGLYEALSVMIVH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
G++ + EL++L +GFGLDL++C TG QDL +VSPKSG AV R GLP+
Sbjct: 121 LDDADAAGELVARFELLILDELGFGLDLSRCAATGTQQDLAYVSPKSGRAVSREAGLPWR 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+KML LP+FL D +++ AF+LT +F ++ + I R FL L +
Sbjct: 181 DKMLALPAFLQRGSGLRADPGAVEDAFRLTGFFFTRHVYEPRAIEQPDARLGFLAALRK 239
>gi|13476445|ref|NP_108015.1| DNA repair protein RecO [Mesorhizobium loti MAFF303099]
gi|20139624|sp|Q985A3|RECO_RHILO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|14027206|dbj|BAB54160.1| DNA repair protein; RecO [Mesorhizobium loti MAFF303099]
Length = 253
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG R +GE + ILEVMTR +GRHLG VR G+S + QP+LQ GN V + WR+
Sbjct: 1 MEWRDEGIILGTRKHGETSAILEVMTRAHGRHLGLVRGGRSRKQQPVLQPGNRVDLLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E +E + A+L+ S++ +YGLQ++ R LPER+ LY+ L++ +
Sbjct: 61 RLDEHLGTFQAEAIEMNAARLMDSAVAVYGLQTMAAHLRLLPERDAHGGLYEALSVMIVH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
G++ + EL++L +GFGLDL++C TG QDL +VSPKSG AV R G P+
Sbjct: 121 LDDADAAGELVARFELLILDELGFGLDLSQCAATGTRQDLAYVSPKSGRAVSREAGAPWR 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+KML LP+FL D +++ AF+LT +F ++ + I R FL L +
Sbjct: 181 DKMLALPAFLQRGSGLRADPAAVEDAFRLTGFFFTRHVYEPRAIEQPDARAGFLAALRK 239
>gi|90424142|ref|YP_532512.1| DNA repair protein RecO [Rhodopseudomonas palustris BisB18]
gi|119361479|sp|Q214J3|RECO_RHOPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|90106156|gb|ABD88193.1| DNA repair protein RecO [Rhodopseudomonas palustris BisB18]
Length = 254
Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 97/242 (40%), Positives = 139/242 (57%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ I+LGVR +GE + I+E++TR +GRHLG VR G +++P+LQ GN V WR+
Sbjct: 1 MEWTDEGIVLGVRRHGESSAIVELLTRGHGRHLGLVRGGAGSKLRPLLQPGNSVSAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A LL+SS +YG+ + L R LPER+P E+Y+ L L+
Sbjct: 61 RLDEHLGYYVLEGTRMRAAMLLASSHAVYGVTHLASLARLLPERDPQPEIYERLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL C TGVT DL++VSPKSGGAV R+ G P+
Sbjct: 121 FDDVGEAAVHVIRFELTMLAELGFGLDLANCAATGVTSDLIYVSPKSGGAVSRAAGEPWR 180
Query: 181 EKMLVLPSFLWKEE---QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+K+L LP FL + L+ F LT FL + L+ R+ F+ ++
Sbjct: 181 DKLLRLPPFLREGSAQRNDWSDQDLQDGFLLTGRFLLRNVLEPRGQGHSDARDGFINAVV 240
Query: 238 EL 239
L
Sbjct: 241 RL 242
>gi|85716281|ref|ZP_01047255.1| DNA repair protein RecO [Nitrobacter sp. Nb-311A]
gi|85696953|gb|EAQ34837.1| DNA repair protein RecO [Nitrobacter sp. Nb-311A]
Length = 260
Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 98/241 (40%), Positives = 137/241 (56%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWIDDGIVLGVRRHGESSAIVELLTRDHGRHLGLVRGGAGSRMRPLLQPGNSVNALWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A LL+SS YG+ + L R LPER+P ++ ML L+
Sbjct: 61 RLDEHLGAYALEGTRMRAASLLASSHATYGVTHLAALARLLPERDPHEGIFTMLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ C TGVT DL++VSPKSGGAV R G P+
Sbjct: 121 FDHAGGAAIHLIRFELAMLSELGFGLDLSACAATGVTGDLIYVSPKSGGAVSRQAGEPWR 180
Query: 181 EKMLVLPSFLW---KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+++L LP FL E+ L F+LT FL ++ L+ R F+ ++
Sbjct: 181 DRLLPLPPFLRASHDEQNGCSEQDLLDGFELTGRFLLRHVLEPRGQGHSDARAGFINAVV 240
Query: 238 E 238
Sbjct: 241 R 241
>gi|6655025|gb|AAF22872.1| recO-like protein [Bradyrhizobium japonicum]
Length = 250
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 96/240 (40%), Positives = 138/240 (57%), Gaps = 2/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDEGIVLGVRRHGESSAIVELLTRAHGRHLGLVRGGAGSRMRPLLQPGNSVTAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E L+ A LL+SS +YG+ + + R LPER+P E++ +L L+
Sbjct: 61 RLDEHLGTYAVEGLKLRAATLLASSHGVYGVTHLASIARLLPERDPHEEIFGLLEHSLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ EL +L +GFGL L C VTG T DL++VSPKSGGAV R G P+
Sbjct: 121 FDDIGSAAVHVIHFELAMLAELGFGLALDNCAVTGETTDLIYVSPKSGGAVSRGAGEPWR 180
Query: 181 EKMLVLPSFLW--KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+++L LP FL + + L+ F+LT FL ++ L+ R F+ L
Sbjct: 181 DRLLRLPPFLRHGETATELTDQDLQDGFRLTGLFLLRHVLEPRGQVHSDARAGFINALTR 240
>gi|27380169|ref|NP_771698.1| DNA repair protein RecO [Bradyrhizobium japonicum USDA 110]
gi|30179751|sp|Q9RH67|RECO_BRAJA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|27353323|dbj|BAC50323.1| recO-like protein [Bradyrhizobium japonicum USDA 110]
Length = 250
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 96/240 (40%), Positives = 138/240 (57%), Gaps = 2/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDEGIVLGVRRHGESSAIVELLTRAHGRHLGLVRGGAGSRMRPLLQPGNSVSAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E L+ A LL+SS +YG+ + + R LPER+P E++ +L L+
Sbjct: 61 RLDEHLGTYAVEGLKLRAATLLASSHGVYGVTHLASIARLLPERDPHEEIFGLLEHSLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ EL +L +GFGL L C VTG T DL++VSPKSGGAV R G P+
Sbjct: 121 FDDIGSAAVHVIHFELAMLAELGFGLALDNCAVTGETTDLIYVSPKSGGAVSRGAGEPWR 180
Query: 181 EKMLVLPSFLW--KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+++L LP FL + + L+ F+LT FL ++ L+ R F+ L
Sbjct: 181 DRLLRLPPFLRHGETATELTDQDLQDGFRLTGLFLLRHVLEPRGQVHSDARAGFINALTR 240
>gi|149913474|ref|ZP_01902007.1| DNA repair protein RecO [Roseobacter sp. AzwK-3b]
gi|149812594|gb|EDM72423.1| DNA repair protein RecO [Roseobacter sp. AzwK-3b]
Length = 244
Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 6/244 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R++GE ++I+EV T ++GRH G VR G S ++ P+LQ G + + WR+
Sbjct: 1 MEWRDQGILLSTRTHGETSVIIEVFTPEHGRHAGVVRGGTSRKLAPVLQPGAQLDLRWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++G F E + S A + L L GL ++ L LP+RE LY L+
Sbjct: 61 RLEDHIGTFTVEPVRSRAAASMGDRLSLAGLNAVTALLLFCLPDREAHRRLYRRTEALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLP 178
V ++ E+ LL +GFGLDL+ C V G DL +VSP+SG AV R+
Sbjct: 121 LLGQGDVWPLAYLNWEMALLDEMGFGLDLSGCAVMGPQANDLSYVSPRSGRAVSRAGAGE 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKL 236
+A+++L LP+ L DA + FQ+T +FL + L R+ F+ +
Sbjct: 181 WADRLLPLPACLLGAGPAPDA-EVAEGFQVTGHFLQNH-LAPELGNKPLPAARQRFVDRF 238
Query: 237 LELI 240
+
Sbjct: 239 RARL 242
>gi|319784500|ref|YP_004143976.1| DNA repair protein RecO [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317170388|gb|ADV13926.1| DNA repair protein RecO [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 258
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 104/239 (43%), Positives = 151/239 (63%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG R +GE + ILEV+TR +GRHLG VR G+S + QP+LQ GN V + WR+
Sbjct: 1 MEWRDEGIILGTRKHGETSAILEVLTRAHGRHLGLVRGGRSRKQQPVLQPGNRVDLLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E +E + A+L+ S++ +YGLQ++ R LPER+ LY+ L + +
Sbjct: 61 RLDEHLGTFQAEAIEMNAARLMDSAVAVYGLQTMAAHLRLLPERDAHEGLYETLAVMIVH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V G++ + EL++L +GFGLDL++C TG QDL +VSPKSG AV R GLP+
Sbjct: 121 LDDADVAGELVARFELLVLDELGFGLDLSQCAATGTRQDLAYVSPKSGRAVSREAGLPWR 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
++ML LP+FL DA + AF+LT +F N++ + I R FL L +
Sbjct: 181 DRMLALPAFLQRGSGLRADAADVDDAFRLTGFFFNRHVYEPRGIEPPDARTGFLAALRK 239
>gi|254718804|ref|ZP_05180615.1| DNA repair protein RecO [Brucella sp. 83/13]
gi|265983786|ref|ZP_06096521.1| DNA repair protein recO [Brucella sp. 83/13]
gi|264662378|gb|EEZ32639.1| DNA repair protein recO [Brucella sp. 83/13]
Length = 247
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLGFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 DKLLALPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|162139842|ref|YP_318527.2| DNA repair protein RecO [Nitrobacter winogradskyi Nb-255]
gi|119361470|sp|Q3SRB6|RECO_NITWN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 262
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 97/241 (40%), Positives = 136/241 (56%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDDGIVLGVRRHGESSAIVELLTRTHGRHLGLVRGGAGSRMRPLLQPGNSVSALWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A LL+SS YG+ + L R LPER+P ++ ML L+
Sbjct: 61 RLDEHLGTYALEGTRMRAASLLASSHATYGVTHLAALARLLPERDPHEVIFAMLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ C TG T DL++VSPKSGGAV R G P+
Sbjct: 121 FDRAGGAAIHLIRFELAMLSELGFGLDLSACAATGATGDLIYVSPKSGGAVSRQAGEPWR 180
Query: 181 EKMLVLPSFLW---KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+++L LP FL E+ L F+LT FL ++ L+ R F+ ++
Sbjct: 181 DRLLPLPPFLRVTHDEQDGWSEQDLLDGFELTGRFLLRHVLEPRGQGHSDARAGFINAVV 240
Query: 238 E 238
Sbjct: 241 R 241
>gi|74420976|gb|ABA05175.1| DNA replication and repair protein RecO [Nitrobacter winogradskyi
Nb-255]
Length = 278
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 97/241 (40%), Positives = 136/241 (56%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 17 MEWTDDGIVLGVRRHGESSAIVELLTRTHGRHLGLVRGGAGSRMRPLLQPGNSVSALWRA 76
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A LL+SS YG+ + L R LPER+P ++ ML L+
Sbjct: 77 RLDEHLGTYALEGTRMRAASLLASSHATYGVTHLAALARLLPERDPHEVIFAMLERTLDD 136
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ C TG T DL++VSPKSGGAV R G P+
Sbjct: 137 FDRAGGAAIHLIRFELAMLSELGFGLDLSACAATGATGDLIYVSPKSGGAVSRQAGEPWR 196
Query: 181 EKMLVLPSFLW---KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+++L LP FL E+ L F+LT FL ++ L+ R F+ ++
Sbjct: 197 DRLLPLPPFLRVTHDEQDGWSEQDLLDGFELTGRFLLRHVLEPRGQGHSDARAGFINAVV 256
Query: 238 E 238
Sbjct: 257 R 257
>gi|90420864|ref|ZP_01228769.1| DNA repair protein recO [Aurantimonas manganoxydans SI85-9A1]
gi|90334839|gb|EAS48611.1| DNA repair protein recO [Aurantimonas manganoxydans SI85-9A1]
Length = 243
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 150/239 (62%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++AI+LGVR GE +++ EVMTR GRHLG VR G+S + QP+LQ GN V V+WR+
Sbjct: 1 MEWREEAIVLGVRRLGETSVVAEVMTRARGRHLGLVRGGRSRKQQPVLQPGNSVAVHWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E LE A+L+ S + L G+Q + R L ER+P LYD L I ++
Sbjct: 61 RLDEHMGAFVLEPLELRAARLMESGVGLNGVQLVAAHLRLLAERDPHARLYDGLQIIVDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P ++ ++ ++ E+ LL+ +GFGLDL +C TG DL +VSP++G AV R G P+
Sbjct: 121 LDRPELVAELMLRFEIALLEELGFGLDLERCAATGQRDDLAYVSPRTGRAVSRDAGAPWH 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP+FL DA+SL + ++LT YFL ++ + I R FL L ++
Sbjct: 181 DKLLTLPAFLADAATASDAESLAAGYRLTGYFLGRHVYEPRGIDVPDARAGFLSALRKI 239
>gi|163842935|ref|YP_001627339.1| DNA repair protein RecO [Brucella suis ATCC 23445]
gi|163673658|gb|ABY37769.1| DNA repair protein RecO [Brucella suis ATCC 23445]
Length = 247
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
EK+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 EKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|23501551|ref|NP_697678.1| DNA repair protein RecO [Brucella suis 1330]
gi|62289624|ref|YP_221417.1| DNA repair protein RecO [Brucella abortus bv. 1 str. 9-941]
gi|82699552|ref|YP_414126.1| DNA repair protein RecO [Brucella melitensis biovar Abortus 2308]
gi|148559418|ref|YP_001258648.1| DNA repair protein RecO [Brucella ovis ATCC 25840]
gi|161618634|ref|YP_001592521.1| DNA repair protein RecO [Brucella canis ATCC 23365]
gi|189023877|ref|YP_001934645.1| DNA repair protein RecO [Brucella abortus S19]
gi|225852185|ref|YP_002732418.1| DNA repair protein RecO [Brucella melitensis ATCC 23457]
gi|237815119|ref|ZP_04594117.1| DNA repair protein RecO [Brucella abortus str. 2308 A]
gi|254688939|ref|ZP_05152193.1| DNA repair protein RecO [Brucella abortus bv. 6 str. 870]
gi|254693421|ref|ZP_05155249.1| DNA repair protein RecO [Brucella abortus bv. 3 str. Tulya]
gi|254697074|ref|ZP_05158902.1| DNA repair protein RecO [Brucella abortus bv. 2 str. 86/8/59]
gi|254701451|ref|ZP_05163279.1| DNA repair protein RecO [Brucella suis bv. 5 str. 513]
gi|254703997|ref|ZP_05165825.1| DNA repair protein RecO [Brucella suis bv. 3 str. 686]
gi|254707629|ref|ZP_05169457.1| DNA repair protein RecO [Brucella pinnipedialis M163/99/10]
gi|254709789|ref|ZP_05171600.1| DNA repair protein RecO [Brucella pinnipedialis B2/94]
gi|254713791|ref|ZP_05175602.1| DNA repair protein RecO [Brucella ceti M644/93/1]
gi|254717152|ref|ZP_05178963.1| DNA repair protein RecO [Brucella ceti M13/05/1]
gi|254729970|ref|ZP_05188548.1| DNA repair protein RecO [Brucella abortus bv. 4 str. 292]
gi|256031279|ref|ZP_05444893.1| DNA repair protein RecO [Brucella pinnipedialis M292/94/1]
gi|256060791|ref|ZP_05450953.1| DNA repair protein RecO [Brucella neotomae 5K33]
gi|256113203|ref|ZP_05454071.1| DNA repair protein RecO [Brucella melitensis bv. 3 str. Ether]
gi|256257187|ref|ZP_05462723.1| DNA repair protein RecO [Brucella abortus bv. 9 str. C68]
gi|256264305|ref|ZP_05466837.1| recombination protein O [Brucella melitensis bv. 2 str. 63/9]
gi|256369101|ref|YP_003106609.1| DNA repair protein RecO [Brucella microti CCM 4915]
gi|260545621|ref|ZP_05821362.1| recombination protein O [Brucella abortus NCTC 8038]
gi|260566756|ref|ZP_05837226.1| recombination protein O [Brucella suis bv. 4 str. 40]
gi|260754426|ref|ZP_05866774.1| DNA repair protein recO [Brucella abortus bv. 6 str. 870]
gi|260757645|ref|ZP_05869993.1| DNA repair protein recO [Brucella abortus bv. 4 str. 292]
gi|260761472|ref|ZP_05873815.1| DNA repair protein recO [Brucella abortus bv. 2 str. 86/8/59]
gi|260883454|ref|ZP_05895068.1| DNA repair protein recO [Brucella abortus bv. 9 str. C68]
gi|261213672|ref|ZP_05927953.1| DNA repair protein recO [Brucella abortus bv. 3 str. Tulya]
gi|261218967|ref|ZP_05933248.1| DNA repair protein recO [Brucella ceti M13/05/1]
gi|261315121|ref|ZP_05954318.1| DNA repair protein recO [Brucella pinnipedialis M163/99/10]
gi|261317324|ref|ZP_05956521.1| DNA repair protein recO [Brucella pinnipedialis B2/94]
gi|261321534|ref|ZP_05960731.1| DNA repair protein recO [Brucella ceti M644/93/1]
gi|261324782|ref|ZP_05963979.1| DNA repair protein recO [Brucella neotomae 5K33]
gi|261751991|ref|ZP_05995700.1| DNA repair protein recO [Brucella suis bv. 5 str. 513]
gi|261754650|ref|ZP_05998359.1| DNA repair protein recO [Brucella suis bv. 3 str. 686]
gi|265988362|ref|ZP_06100919.1| DNA repair protein recO [Brucella pinnipedialis M292/94/1]
gi|265994611|ref|ZP_06107168.1| DNA repair protein recO [Brucella melitensis bv. 3 str. Ether]
gi|297248035|ref|ZP_06931753.1| DNA repair protein RecO [Brucella abortus bv. 5 str. B3196]
gi|38258601|sp|Q8G1P8|RECO_BRUSU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|75497079|sp|Q57E78|RECO_BRUAB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361447|sp|Q2YMZ9|RECO_BRUA2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|23347462|gb|AAN29593.1| DNA repair protein RecO, putative [Brucella suis 1330]
gi|62195756|gb|AAX74056.1| putatiave DNA repair protein RecO [Brucella abortus bv. 1 str.
9-941]
gi|82615653|emb|CAJ10640.1| Cytochrome P450:Recombination protein O, RecO [Brucella melitensis
biovar Abortus 2308]
gi|148370675|gb|ABQ60654.1| DNA repair protein RecO [Brucella ovis ATCC 25840]
gi|161335445|gb|ABX61750.1| DNA repair protein RecO [Brucella canis ATCC 23365]
gi|189019449|gb|ACD72171.1| Recombination protein O, RecO [Brucella abortus S19]
gi|225640550|gb|ACO00464.1| DNA repair protein RecO [Brucella melitensis ATCC 23457]
gi|237789956|gb|EEP64166.1| DNA repair protein RecO [Brucella abortus str. 2308 A]
gi|255999261|gb|ACU47660.1| DNA repair protein RecO [Brucella microti CCM 4915]
gi|260097028|gb|EEW80903.1| recombination protein O [Brucella abortus NCTC 8038]
gi|260156274|gb|EEW91354.1| recombination protein O [Brucella suis bv. 4 str. 40]
gi|260667963|gb|EEX54903.1| DNA repair protein recO [Brucella abortus bv. 4 str. 292]
gi|260671904|gb|EEX58725.1| DNA repair protein recO [Brucella abortus bv. 2 str. 86/8/59]
gi|260674534|gb|EEX61355.1| DNA repair protein recO [Brucella abortus bv. 6 str. 870]
gi|260872982|gb|EEX80051.1| DNA repair protein recO [Brucella abortus bv. 9 str. C68]
gi|260915279|gb|EEX82140.1| DNA repair protein recO [Brucella abortus bv. 3 str. Tulya]
gi|260924056|gb|EEX90624.1| DNA repair protein recO [Brucella ceti M13/05/1]
gi|261294224|gb|EEX97720.1| DNA repair protein recO [Brucella ceti M644/93/1]
gi|261296547|gb|EEY00044.1| DNA repair protein recO [Brucella pinnipedialis B2/94]
gi|261300762|gb|EEY04259.1| DNA repair protein recO [Brucella neotomae 5K33]
gi|261304147|gb|EEY07644.1| DNA repair protein recO [Brucella pinnipedialis M163/99/10]
gi|261741744|gb|EEY29670.1| DNA repair protein recO [Brucella suis bv. 5 str. 513]
gi|261744403|gb|EEY32329.1| DNA repair protein recO [Brucella suis bv. 3 str. 686]
gi|262765724|gb|EEZ11513.1| DNA repair protein recO [Brucella melitensis bv. 3 str. Ether]
gi|263094578|gb|EEZ18376.1| recombination protein O [Brucella melitensis bv. 2 str. 63/9]
gi|264660559|gb|EEZ30820.1| DNA repair protein recO [Brucella pinnipedialis M292/94/1]
gi|297175204|gb|EFH34551.1| DNA repair protein RecO [Brucella abortus bv. 5 str. B3196]
gi|326408685|gb|ADZ65750.1| Recombination protein O, RecO [Brucella melitensis M28]
gi|326538410|gb|ADZ86625.1| DNA repair protein RecO [Brucella melitensis M5-90]
Length = 247
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
EK+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 EKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|225627162|ref|ZP_03785200.1| DNA repair protein RecO [Brucella ceti str. Cudo]
gi|256159389|ref|ZP_05457171.1| DNA repair protein RecO [Brucella ceti M490/95/1]
gi|256254687|ref|ZP_05460223.1| DNA repair protein RecO [Brucella ceti B1/94]
gi|260168417|ref|ZP_05755228.1| DNA repair protein RecO [Brucella sp. F5/99]
gi|261221865|ref|ZP_05936146.1| DNA repair protein recO [Brucella ceti B1/94]
gi|261757878|ref|ZP_06001587.1| recombination protein O [Brucella sp. F5/99]
gi|265997829|ref|ZP_06110386.1| DNA repair protein recO [Brucella ceti M490/95/1]
gi|225617997|gb|EEH15041.1| DNA repair protein RecO [Brucella ceti str. Cudo]
gi|260920449|gb|EEX87102.1| DNA repair protein recO [Brucella ceti B1/94]
gi|261737862|gb|EEY25858.1| recombination protein O [Brucella sp. F5/99]
gi|262552297|gb|EEZ08287.1| DNA repair protein recO [Brucella ceti M490/95/1]
Length = 247
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGRRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
EK+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 EKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|294852027|ref|ZP_06792700.1| DNA repair protein RecO [Brucella sp. NVSL 07-0026]
gi|294820616|gb|EFG37615.1| DNA repair protein RecO [Brucella sp. NVSL 07-0026]
Length = 247
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCWHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
EK+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 EKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|306842071|ref|ZP_07474743.1| DNA repair protein RecO [Brucella sp. BO2]
gi|306287821|gb|EFM59244.1| DNA repair protein RecO [Brucella sp. BO2]
Length = 247
Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLGFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG L++VSPKSG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDGLIYVSPKSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 DKLLALPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|86749733|ref|YP_486229.1| DNA repair protein RecO [Rhodopseudomonas palustris HaA2]
gi|119361478|sp|Q2IWU2|RECO_RHOP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|86572761|gb|ABD07318.1| DNA replication and repair protein RecO [Rhodopseudomonas palustris
HaA2]
Length = 249
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 142/243 (58%), Gaps = 3/243 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILGVR +GE I+E++TR +GRHLG VR G S R++P+LQ GN V WR+
Sbjct: 1 MEWSDEGIILGVRRHGEAGAIVELLTRGHGRHLGLVRGGASSRLRPLLQPGNSVLAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG ++ E A +L+SS +YG+ + L R LPER+P ++Y+ML L+
Sbjct: 61 RLDEHLGYYQLEGTRMRAATMLASSHAVYGITHLASLARLLPERDPHEDIYEMLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ C TG T DL++VSPKSGGAV R+ G P+
Sbjct: 121 FDDVGDAATHLIRFELAMLAELGFGLDLSACAATGATTDLIYVSPKSGGAVSRTAGEPWR 180
Query: 181 EKMLVLPSFLWKEE---QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
EK+L LP FL ++ L+ F LT FL + L+ R+ F+ +
Sbjct: 181 EKLLRLPDFLREDNDGRNGWSDQDLRDGFDLTGRFLLRNVLEPRGQGHSDARDGFINAVA 240
Query: 238 ELI 240
+ +
Sbjct: 241 KHL 243
>gi|17987568|ref|NP_540202.1| DNA repair protein RecO [Brucella melitensis bv. 1 str. 16M]
gi|256044360|ref|ZP_05447264.1| DNA repair protein RecO [Brucella melitensis bv. 1 str. Rev.1]
gi|260563712|ref|ZP_05834198.1| DNA repair protein recO [Brucella melitensis bv. 1 str. 16M]
gi|265990775|ref|ZP_06103332.1| DNA repair protein recO [Brucella melitensis bv. 1 str. Rev.1]
gi|20139477|sp|Q8YG76|RECO_BRUME RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|17983272|gb|AAL52466.1| DNA repair protein reco [Brucella melitensis bv. 1 str. 16M]
gi|260153728|gb|EEW88820.1| DNA repair protein recO [Brucella melitensis bv. 1 str. 16M]
gi|263001559|gb|EEZ14134.1| DNA repair protein recO [Brucella melitensis bv. 1 str. Rev.1]
Length = 247
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +ILG R +GE + I+EVMT +GRH+G VR G+S RMQP+LQ GN V V+W +
Sbjct: 1 MEWRDEGVILGTRRHGETSAIVEVMTCGHGRHMGMVRGGRSRRMQPLLQPGNHVDVSWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L A+L+ + + LYG+Q R LPER+P LY+ L + +
Sbjct: 61 RLDEHMGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++ ++ E+M+L+ +GFGLDL +C TG DL++VSP SG AVCR G P+A
Sbjct: 121 FDDPLAAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPTSGRAVCREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
EK+L LPSF+ D L AF +T YFL ++ + R FL +
Sbjct: 181 EKLLSLPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRA 240
Query: 240 I 240
I
Sbjct: 241 I 241
>gi|115525024|ref|YP_781935.1| DNA repair protein RecO [Rhodopseudomonas palustris BisA53]
gi|122295836|sp|Q07M79|RECO_RHOP5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|115518971|gb|ABJ06955.1| DNA repair protein RecO [Rhodopseudomonas palustris BisA53]
Length = 258
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 99/240 (41%), Positives = 142/240 (59%), Gaps = 2/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LGVR +GE + I+E++TR +GRHLG VR G +++P+LQ GN V WR+
Sbjct: 1 MEWTDDGIVLGVRRHGESSAIVELLTRAHGRHLGLVRGGAGSKLRPVLQPGNSVHAGWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E + A LL+ YG+ + L R LPER+P E+Y+ + L
Sbjct: 61 RLDEHLGYYALEGMRLRAATLLAVPHAAYGITHLAALARLLPERDPHPEMYETVERILED 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ G V+ EL +L +GFGLDL+ C TGVT DL++VSPKSGGAV R+ G P+
Sbjct: 121 FDDATMAGAHLVRFELAMLGELGFGLDLSACAATGVTSDLIYVSPKSGGAVSRTAGEPWR 180
Query: 181 EKMLVLPSFLWKEEQT--IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L LP FL ++E AD L+ F LT FL + L+ R+ F+ +
Sbjct: 181 DKLLRLPPFLREDEDAAGCTADDLRDGFALTGRFLLRNVLEPRGQGHSDARDGFINAVTR 240
>gi|114765537|ref|ZP_01444645.1| DNA repair protein RecO [Pelagibaca bermudensis HTCC2601]
gi|114542130|gb|EAU45162.1| DNA repair protein RecO [Roseovarius sp. HTCC2601]
Length = 242
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE + ILEV T ++GRH+G +R G S ++ P LQ G + + WR+
Sbjct: 1 MDWRDTGILLSTRRHGETSAILEVFTAEHGRHMGVLRGGTSRKIAPSLQPGAQLDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++G + E S A +S L L GL ++V L LPERE LY L+
Sbjct: 61 RLEDHMGAWTVEPQRSRAASAMSDRLSLAGLNAVVALLSFCLPEREAHPALYARTESLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ E+ LL +GFGLDL+ C VTG + L +VSP++G AV +
Sbjct: 121 LLAERELWPLAYMRWEMALLDEMGFGLDLSACAVTGTNEPLDYVSPRTGRAVSAFGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
++L LP + D + A + T +FL L R FL +L
Sbjct: 181 VARLLPLPPVMLGRGSAPD-GEILDALRTTGHFLENR-LAPALGDRPLPAARGLFLDRLA 238
Query: 238 E 238
Sbjct: 239 R 239
>gi|146341374|ref|YP_001206422.1| DNA repair protein RecO [Bradyrhizobium sp. ORS278]
gi|166221887|sp|A4YWC5|RECO_BRASO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146194180|emb|CAL78201.1| putative DNA repair protein RecO (Recombination protein O)
[Bradyrhizobium sp. ORS278]
Length = 248
Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 141/241 (58%), Gaps = 2/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LG+R +GE + ++E++TR++GRHLG VR RM+P+LQ GN VR WR+
Sbjct: 1 MEWTDDGIVLGLRRHGESSAVVELLTREHGRHLGLVRGAAGKRMRPVLQPGNTVRAIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + + L A+L+S+S YG+ + L R LPER+P ++Y L L+
Sbjct: 61 RLDEHLGMYAVDGLTLRAAELMSASHGAYGVTHLASLARLLPERDPHEDMYFRLEHALDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V+ EL +L +GFGLDL C TG T DL++VSPKSGGAV R+ G P+A
Sbjct: 121 FADAGAAAAHIVRFELAILTELGFGLDLESCAATGETSDLIYVSPKSGGAVSRTAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQT--IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+++L LP FL + ++ L F+LT FL ++ L+ RE F+ +
Sbjct: 181 DRLLPLPPFLRESDEDHGWSDQDLLDGFRLTGLFLLRHVLEPRGQGHSDAREGFINAVTR 240
Query: 239 L 239
Sbjct: 241 A 241
>gi|192291353|ref|YP_001991958.1| DNA repair protein RecO [Rhodopseudomonas palustris TIE-1]
gi|238692599|sp|B3QJH7|RECO_RHOPT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|192285102|gb|ACF01483.1| DNA repair protein RecO [Rhodopseudomonas palustris TIE-1]
Length = 250
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILGVR +GE I+E++TR +GRHLG VR G S RM+P+LQ GN V +WR+
Sbjct: 1 MEWSDEGIILGVRRHGESAAIVELLTRGHGRHLGMVRGGASARMRPLLQPGNSVLASWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG ++ E + A LL SS +YG+ + L R LPER+P E+Y L + L+
Sbjct: 61 RLDEHLGYYQLEATKMRAATLLGSSHAVYGVTHLASLARLLPERDPHEEIYQRLVLTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V ++ EL +L +GFGLDL+ C TG T +L++VSPKSG AV RS G P+
Sbjct: 121 FDDFGVAAAHLIRFELAILAELGFGLDLSACAATGSTTELIYVSPKSGSAVSRSAGEPWR 180
Query: 181 EKMLVLPSFLWK----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+++L LP+FL L F+LT FL + L+ R F+ +
Sbjct: 181 DRLLRLPAFLRDDEAESGNGWSGQDLFDGFELTGRFLLRNVLEPRGQSHSDARAGFINAI 240
Query: 237 LELI 240
+
Sbjct: 241 TRAL 244
>gi|254512349|ref|ZP_05124416.1| DNA repair protein RecO [Rhodobacteraceae bacterium KLH11]
gi|221536060|gb|EEE39048.1| DNA repair protein RecO [Rhodobacteraceae bacterium KLH11]
Length = 241
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 93/243 (38%), Positives = 130/243 (53%), Gaps = 5/243 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE I+EV T +GRH G VR G S ++ PILQ G + V WR+
Sbjct: 1 MDWRDHGILLTARRHGETAAIIEVFTEGHGRHAGVVRGGTSRKIAPILQPGAQLDVLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +++G F+ E L S A S L L GL ++V L LPEREP +Y ++
Sbjct: 61 RLEEHIGTFQVEPLRSRAAAAFSGRLALAGLNAVVALLSFCLPEREPHPAIYKQTEQLMD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
V +++ EL LL+ +GFGLDL+ C VTGVT L++VSPK+G AV R+ +
Sbjct: 121 LLGQDEVWPLAYLRWELALLEELGFGLDLSACAVTGVTDGLVYVSPKTGRAVSRAGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A+K+L LP L E DA + A + T YFL + L R F+ +
Sbjct: 181 ADKLLPLPPCLRGEGAAPDAG-IAEALRTTGYFLENH-LAPSLGHTPLPDARARFVAQFT 238
Query: 238 ELI 240
+
Sbjct: 239 RRL 241
>gi|39935766|ref|NP_948042.1| DNA repair protein RecO [Rhodopseudomonas palustris CGA009]
gi|61215044|sp|Q6N6B8|RECO_RHOPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|39649619|emb|CAE28141.1| putative DNA repair protein RecO [Rhodopseudomonas palustris
CGA009]
Length = 250
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILGVR +GE I+E++TR +GRHLG VR G S RM+P+LQ GN V +WR+
Sbjct: 1 MEWSDEGIILGVRRHGESAAIVELLTRGHGRHLGMVRGGASARMRPLLQPGNSVLASWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG ++ E + A LL SS +YG+ + L R LPER+P E+Y L + L+
Sbjct: 61 RLDEHLGYYQLEATKMRAATLLGSSHAVYGVTHLASLARLLPERDPHEEIYQRLVLTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V ++ EL +L +GFGLDL+ C TG T +L++VSPKSG AV RS G P+
Sbjct: 121 FDDFGVAAAHLIRFELAILAELGFGLDLSACAATGSTTELIYVSPKSGSAVSRSAGEPWR 180
Query: 181 EKMLVLPSFLWK----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+++L LP+FL L F+LT FL + L+ R F+ +
Sbjct: 181 DRLLRLPAFLRDDEAESGHGWSGQDLFDGFELTGRFLLRNVLEPRGQSHSDARAGFINAI 240
Query: 237 LELI 240
+
Sbjct: 241 TRAL 244
>gi|91977125|ref|YP_569784.1| DNA repair protein RecO [Rhodopseudomonas palustris BisB5]
gi|119361480|sp|Q136V6|RECO_RHOPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|91683581|gb|ABE39883.1| DNA replication and repair protein RecO [Rhodopseudomonas palustris
BisB5]
Length = 249
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 3/243 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILGVR +GE I+E++TR +GRHLG VR G S RM+P+LQ GN V WR+
Sbjct: 1 MEWSDEGIILGVRRHGEAGAIVELLTRSHGRHLGLVRGGASSRMRPLLQPGNSVLAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG ++ E A +L+SS +YG+ + L R LPER+P ++Y+ML L+
Sbjct: 61 RLDEHLGYYQLEGTRMRAATMLASSHAVYGVTHLASLARLLPERDPHEDIYEMLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ C TG T +L++VSPKSG AV R+ G P+
Sbjct: 121 FDDVGDAATHLIRFELAMLAELGFGLDLSACAATGATVELIYVSPKSGSAVSRAAGEPWR 180
Query: 181 EKMLVLPSFLWKEE---QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+K+L LP+FL + L+ F LT FL + L+ R+ F+ +
Sbjct: 181 DKLLRLPAFLRDDNDGRNGWSDQDLRDGFDLTGRFLLRNVLEPRGQGHSDARDGFINAVT 240
Query: 238 ELI 240
+
Sbjct: 241 RHL 243
>gi|163760593|ref|ZP_02167674.1| DNA repair protein [Hoeflea phototrophica DFL-43]
gi|162282208|gb|EDQ32498.1| DNA repair protein [Hoeflea phototrophica DFL-43]
Length = 256
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 160/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ IILG+R +GE ++I EVMT +GRH+G VR G+S R+QP+LQ GN V + WR+
Sbjct: 1 MEWRDEGIILGLRKHGETSVIAEVMTHAHGRHMGIVRGGRSKRLQPVLQPGNSVDLVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG+++ E++ + +L+ S++ ++G+Q++ L R LPER+ L+D + L+
Sbjct: 61 RLDEHLGQYQVELINARAGRLMQSAIGVHGVQAMAALLRLLPERDSHPRLHDAFAVILDS 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G ++V+ EL +L+++GFGLDLT C TG ++DL++VSPKSG AV + G P+A
Sbjct: 121 FDAPEEAGALYVRFELAVLEDLGFGLDLTACAATGASEDLVYVSPKSGRAVSAAAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQTI-DADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
E+ML LP+FL Q DA L F+L+ YFL+++ + I + RE+F L+
Sbjct: 181 ERMLALPAFLADRSQACGDAQMLAHGFKLSGYFLDRHVFEPRGIEAPISRESFCTAALKA 240
Query: 240 I 240
+
Sbjct: 241 M 241
>gi|92117771|ref|YP_577500.1| DNA repair protein RecO [Nitrobacter hamburgensis X14]
gi|119361468|sp|Q1QL57|RECO_NITHX RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|91800665|gb|ABE63040.1| DNA replication and repair protein RecO [Nitrobacter hamburgensis
X14]
Length = 253
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/241 (39%), Positives = 138/241 (57%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LGVR +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDDGIVLGVRRHGESSAIVELLTRGHGRHLGLVRGGAGSRMRPLLQPGNSVSALWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A LL +S YG+ + L R LPER+P +++ L L+
Sbjct: 61 RLDEHLGAYALEGTRMRAANLLGASHATYGVTHLASLARLLPERDPHDGIFERLERTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L +GFGLDL+ CV TG T +L++VSPKSGGAV R G P+
Sbjct: 121 FDTAGEAAIHLIRFELAMLTELGFGLDLSTCVATGTTTELIYVSPKSGGAVSRQAGEPWR 180
Query: 181 EKMLVLPSFLWKEEQT---IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+++L LP FL + ++ L F+LT FL ++ L+ R F+ ++
Sbjct: 181 DRLLRLPPFLREADEEQSGWSDQDLLDGFELTGRFLLRHVLEPRGQGHSDARAGFINAVV 240
Query: 238 E 238
+
Sbjct: 241 K 241
>gi|240850199|ref|YP_002971592.1| DNA repair protein RecO [Bartonella grahamii as4aup]
gi|240267322|gb|ACS50910.1| DNA repair protein RecO [Bartonella grahamii as4aup]
Length = 248
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 100/239 (41%), Positives = 147/239 (61%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ A+ILG R YGE ++ILEVMTR++GR++G V+ G+S RM +LQ GN V W +
Sbjct: 1 MKWKEQAVILGTRQYGETSVILEVMTREHGRYMGVVKGGRSRRMAALLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ H A+L+ LY LQ I R LPER+P LYD+L++F+
Sbjct: 61 RLEEHLGLFRLEALDLHAARLICLPEALYALQLIAFHLRLLPERDPHPVLYDILHLFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P V ++ V+ E+ LL+ +GFGLDL+ C TG + L +VSPKSG AVC G P+
Sbjct: 121 FDEPFVNAELLVRFEMRLLEELGFGLDLSCCAATGRQERLHYVSPKSGRAVCEEAGEPWK 180
Query: 181 EKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + + D+ + + F LT +FL ++ + I +R N +
Sbjct: 181 KKLLILPQFLVQRTTRPTDSSDIINGFILTGFFLMRHVWEPRDIKQPSVRMNLIQLFER 239
>gi|148256029|ref|YP_001240614.1| DNA repair protein RecO [Bradyrhizobium sp. BTAi1]
gi|166221886|sp|A5EKL4|RECO_BRASB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146408202|gb|ABQ36708.1| DNA replication and repair protein RecO [Bradyrhizobium sp. BTAi1]
Length = 248
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 2/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LG+R +GE + +LE++TR++GRHLG VR RM+P+LQ GN VR WR+
Sbjct: 1 MEWTDDGIVLGLRRHGESSAVLELLTREHGRHLGLVRGASGARMRPMLQPGNTVRAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + + L A+L+S + YG+ + L R LPER+P E+Y L L+
Sbjct: 61 RLDEHLGMYAIDGLTLRAAELMSVAHGAYGVTHLAALARLLPERDPHQEMYLRLEHALDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V+ EL +L +GFGLDL C TG T DL++VSPKSGGAV RS G P+A
Sbjct: 121 FAEAGGAAVHIVRFELAILAELGFGLDLESCAATGETTDLVYVSPKSGGAVSRSAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQT--IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+++L LP FL + E L F+LT FL ++ L+ RE F+ +
Sbjct: 181 DRLLPLPPFLRESEDDHGFSDQDLLDGFRLTGLFLLRHVLEPRGQGHSDAREGFINAVTR 240
Query: 239 L 239
Sbjct: 241 A 241
>gi|254469353|ref|ZP_05082758.1| DNA repair protein RecO [Pseudovibrio sp. JE062]
gi|211961188|gb|EEA96383.1| DNA repair protein RecO [Pseudovibrio sp. JE062]
Length = 253
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 102/244 (41%), Positives = 147/244 (60%), Gaps = 6/244 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQ + I++G R GE NI+LEV+T GR LG VR G+S R QP LQ GN + + WR+
Sbjct: 1 MQWQAEGIVIGTRKQGENNILLEVLTPDRGRCLGLVRGGRSRRQQPALQLGNHLNLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F E L+ A L+ ++ ++GLQS+ R LPER+P L+ L++ L+
Sbjct: 61 RLDEHLGFFTVEPLQLRAAHLMQTARAIHGLQSLCAQIRLLPERDPHPNLFHALDVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P + + ++ EL LL +GFGLDLT+C TG T +L+WVSPKSG AVC++ G PYA
Sbjct: 121 LEDPQIGAALVLRFELELLNELGFGLDLTECAATGATDELIWVSPKSGRAVCKTAGQPYA 180
Query: 181 EKMLVLPSFL------WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
K+L LP FL + I +++ F LT YFL KY + I R++++
Sbjct: 181 SKLLTLPEFLKAPQARLSQNIQISKGDMEAGFSLTGYFLFKYIYEPRSIPWPPARDSYVT 240
Query: 235 KLLE 238
L +
Sbjct: 241 ALKK 244
>gi|316934141|ref|YP_004109123.1| DNA repair protein RecO [Rhodopseudomonas palustris DX-1]
gi|315601855|gb|ADU44390.1| DNA repair protein RecO [Rhodopseudomonas palustris DX-1]
Length = 250
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 138/244 (56%), Gaps = 4/244 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILGVR +GE I+E++TR +GRHLG VR S RM+P+LQ GN V +WR+
Sbjct: 1 MDWSDEGIILGVRRHGEAGAIVELLTRSHGRHLGMVRGAASARMRPLLQPGNSVLASWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG ++ E + A LL+SS +YG+ + L R LPER+P E+Y L + L+
Sbjct: 61 RLDEHLGYYQLEATKMRAATLLASSHAVYGVTHLASLARLLPERDPHEEIYHRLILTLDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ ++ EL +L +GFGLDL+ C TG T +L++VSPKSG AV R G P+
Sbjct: 121 FDDLGIAAAHLIRFELAILAELGFGLDLSACAATGATTELIYVSPKSGSAVSRIAGEPWR 180
Query: 181 EKMLVLPSFLWKEEQT----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+++L LP FL +E L F LT FL + L+ R F+ +
Sbjct: 181 DRLLRLPPFLRDDEAASESGWSGQDLFDGFALTGRFLLRNVLEPRGQGHSDARAGFINAV 240
Query: 237 LELI 240
+
Sbjct: 241 TRAL 244
>gi|86135730|ref|ZP_01054309.1| DNA repair protein RecO [Roseobacter sp. MED193]
gi|85826604|gb|EAQ46800.1| DNA repair protein RecO [Roseobacter sp. MED193]
Length = 244
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 5/243 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE I++V T +GRH G V G S + P+LQ G + + WR+
Sbjct: 1 MEWRDHGILLTRRRHGEGAAIIDVFTEHHGRHAGIVHGGASRKKAPVLQPGAQLDLLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
RL ++LG ++ E L S A LS L L GL ++ L LPER +LY L+
Sbjct: 61 RLQEHLGSYQAEPLRSRAAAALSGRLALAGLNAVTGLLGFCLPERAAYPDLYKQSEQLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + +++ E+ LL +GFGLDL+ C V+G +DL ++SPK+G AV R +
Sbjct: 121 LLEQEEIWPLAYLRWEMALLAAMGFGLDLSACAVSGSNEDLAYISPKTGRAVSRQEAGQW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN--IIHCHLLRENFLGKLL 237
++L LP L + D + + T +FL++ L N R F+ +
Sbjct: 181 VNRLLPLPPVLRGLGEAPD-HEVAEGLRTTGFFLSER-LAPNLGNQPLPEARGRFIDAFM 238
Query: 238 ELI 240
+
Sbjct: 239 RRL 241
>gi|254450984|ref|ZP_05064421.1| DNA repair protein RecO [Octadecabacter antarcticus 238]
gi|198265390|gb|EDY89660.1| DNA repair protein RecO [Octadecabacter antarcticus 238]
Length = 242
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 4/242 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+D+ ++ VR +GE + I+EV T G G VR G S ++ P LQ G + V W+
Sbjct: 1 MIEWRDEGALIRVRKHGESSAIIEVFTPSRGLTAGIVRGGTSRKIAPTLQPGAQLDVTWK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL +LG F E + S A+++ L L GL ++ L F LP+RE +LY L
Sbjct: 61 ARLEDHLGSFTVEPIRSRTAQVMQDRLALAGLNAVTGLLSFLLPDREAHAQLYARTIQLL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ V ++Q E+ LL +GFG+DL+ C V+G+ DL +VSP++G AV R
Sbjct: 121 DLLGQNDVWPLAYLQWEIALLDEMGFGMDLSACAVSGLNDDLFYVSPRTGRAVSRLAAGE 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH-NIIHCHLLRENFLGKLL 237
+A+++L LP L + D + + A + T +FLN + + + R+ + +
Sbjct: 181 WADRLLPLPHVLLGKGDA-DLNEIVLALRTTGHFLNNHLAKSLGNLPIPEARQRLIDAMK 239
Query: 238 EL 239
L
Sbjct: 240 RL 241
>gi|254466686|ref|ZP_05080097.1| DNA repair protein RecO [Rhodobacterales bacterium Y4I]
gi|206687594|gb|EDZ48076.1| DNA repair protein RecO [Rhodobacterales bacterium Y4I]
Length = 241
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 5/243 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE + I++V T +GRH G VR G RM PILQ G + V WR+
Sbjct: 1 MEWRDHGILLSVRRHGESSAIIDVFTEGHGRHAGVVRGGAGRRMAPILQPGAQLDVTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG + E L S A LS L L GL ++ L LPEREP +LY L+
Sbjct: 61 RLEDHLGSYHAEPLRSRAAAALSGRLALAGLNTVTALLSFCLPEREPHPDLYTRSEQLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ EL LL+ +GFGLDL+ C VTG L ++SPK+G AV R +
Sbjct: 121 LLGNEDLWPLAYLRWELALLEEMGFGLDLSACAVTGSRFGLAYISPKTGRAVSREGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A+++L LP + + DA + A + T +FL + L R + L
Sbjct: 181 ADRLLPLPPVMLGQGSAADA-EIVQALRATGFFLEAH-LAPSLGNHPLPEARGRLMDLLS 238
Query: 238 ELI 240
+
Sbjct: 239 RRL 241
>gi|254485777|ref|ZP_05098982.1| DNA repair protein RecO [Roseobacter sp. GAI101]
gi|214042646|gb|EEB83284.1| DNA repair protein RecO [Roseobacter sp. GAI101]
Length = 241
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 92/242 (38%), Positives = 127/242 (52%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE + I+EV T GRH G VR G S ++ PILQ G + V WR+
Sbjct: 1 MEWRDQGILLSARRHGETSAIIEVFTPTQGRHAGIVRGGTSRKIAPILQPGAQLDVAWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++G F E + S +S L L GL ++ L LPEREP LY L+
Sbjct: 61 RLEGHIGAFTVEPVRSRAVSAMSDRLSLAGLNTVTALLSFCLPEREPHPPLYHRTQALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++Q EL LL+ +G+GLDLT C VTG T L++VSPKSG AV R +
Sbjct: 121 LLDQGDLWPLAYLQWELSLLEEMGYGLDLTACAVTGATDALVFVSPKSGRAVTREGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH-NIIHCHLLRENFLGKLLE 238
A+KML LP L E + D D + F+ T YFL ++ ++ R ++
Sbjct: 181 ADKMLPLPPVLLGEGEARD-DEILQGFKTTGYFLEQHLARNLGGRPLPEARARYVDAFSR 239
Query: 239 LI 240
I
Sbjct: 240 QI 241
>gi|85705116|ref|ZP_01036216.1| DNA repair protein RecO [Roseovarius sp. 217]
gi|85670438|gb|EAQ25299.1| DNA repair protein RecO [Roseovarius sp. 217]
Length = 244
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 118/239 (49%), Gaps = 5/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE +I+EV T + GRH G VR G S +M PILQ G + + WR+
Sbjct: 1 MDWRDQGILLSSRRHGESAVIIEVFTPERGRHAGVVRGGASRKMAPILQPGAQLDLEWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++G FR E + S L + L LPERE LY+ L+
Sbjct: 61 RLEDHIGTFRVEPVRSRAGVLGNPLTLAGLNAVCALLLFALPEREAHGALYERTETLLDL 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLPY 179
V ++ EL LL+++GFGLDL+ C V G DL ++SP++G AV R+ +
Sbjct: 121 LAESEVWPLAYLHWELALLEDLGFGLDLSTCAVMGEKANDLSYISPRTGRAVSRAGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKL 236
+K+L LP L DA + +T +FL + L RE F+ ++
Sbjct: 181 VDKLLPLPPCLMGHGPAPDA-EILQGLTVTGHFL-RTHLAPQMRNKPLPEARERFVARM 237
>gi|158423630|ref|YP_001524922.1| recombination protein O [Azorhizobium caulinodans ORS 571]
gi|158330519|dbj|BAF88004.1| recombination protein O [Azorhizobium caulinodans ORS 571]
Length = 245
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 92/240 (38%), Positives = 134/240 (55%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D I+LGVR +GE + I+++MTR+ GRH G VR G S R+ +LQ GN + WR+
Sbjct: 1 MEWTDAGIVLGVRRHGETSAIVDLMTRERGRHAGLVRGGGSRRLAALLQPGNTLHATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG E L ++ S+ +G+ +V L R LPER+P L+ L+ L+
Sbjct: 61 RLEGQLGLMTVEPLTLRSDAIMRSAHGSFGVTHLVGLMRLLPERDPHPGLFASLDAILDA 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++ + E+ LL +GFGLDLT C TG DL +VSP+SG AV RS G PYA
Sbjct: 121 FDEPAHAGELLARFEMALLVELGFGLDLTTCAATGGNNDLAYVSPRSGRAVSRSAGEPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
+K+ LP+FL ++ A ++T +FL+ L+ + R +FL L +
Sbjct: 181 DKLFGLPTFLIGGIVPPSLPDMEEALRMTGFFLSTRVLEPRGLALGEARASFLAALRRAL 240
>gi|163744852|ref|ZP_02152212.1| DNA repair protein RecO [Oceanibulbus indolifex HEL-45]
gi|161381670|gb|EDQ06079.1| DNA repair protein RecO [Oceanibulbus indolifex HEL-45]
Length = 240
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 83/242 (34%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE + I+EV T + GRH G VR G S ++ P LQ G + + WR+
Sbjct: 1 MEWRDQGILLSARRHGETSAIIEVFTPEQGRHAGIVRGGTSRKIAPSLQPGAQLDLAWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++G F E L S A + L L GL ++ L LPEREP LY L+
Sbjct: 61 RLEDHIGAFTVEPLRSRAAVAMQDRLALAGLNAVTALLSFCLPEREPHPALYRRTETLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
V +++ EL LL+ +G+ LDL C VTGV++DL++VSPKSG AV +
Sbjct: 121 MLGQGDVWPLAYLKWELRLLEEMGYALDLESCAVTGVSEDLIYVSPKSGRAVSAKGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH-NIIHCHLLRENFLGKLLE 238
AE++L LP+ L + T +FL + + R F+
Sbjct: 181 AERLLPLPAVL--RGGAGSDAEIAQGLVTTGHFLTAHLARDLGGKPLPESRARFIDAFSR 238
Query: 239 LI 240
+
Sbjct: 239 RL 240
>gi|56698028|ref|YP_168399.1| DNA repair protein RecO [Ruegeria pomeroyi DSS-3]
gi|61214680|sp|Q5LNK7|RECO_SILPO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56679765|gb|AAV96431.1| DNA repair protein RecO, putative [Ruegeria pomeroyi DSS-3]
Length = 241
Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 89/241 (36%), Positives = 123/241 (51%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE + I++ T +GRH G VR G S R+ PILQ G + ++WR+
Sbjct: 1 MDWRDQGILLAVRRHGETSAIIDTFTASHGRHAGVVRGGTSRRIAPILQPGAQLDLSWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG F E L S A +S L L GL ++V L LPERE LY L+
Sbjct: 61 RLEDHLGSFTVEPLRSRAAAAMSGRLALAGLNAVVSLLSFCLPEREAHPRLYKQSEQLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ EL LL +GFGLDL+ C VTG + DL++VSP+SG AV +
Sbjct: 121 LLGQDEIWPLAYLRWELALLDTLGFGLDLSSCAVTGNSDDLVYVSPRSGRAVSAGAAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL-QHNIIHCHLLRENFLGKLLE 238
AE++L LP L E D + A + T +FL R L +
Sbjct: 181 AERLLPLPPCLRGEGPAPDP-EIAQALRTTGHFLEHRVAPALGHAPLPQARGRLLDLISR 239
Query: 239 L 239
L
Sbjct: 240 L 240
>gi|114705890|ref|ZP_01438793.1| DNA repair protein RecO [Fulvimarina pelagi HTCC2506]
gi|114538736|gb|EAU41857.1| DNA repair protein RecO [Fulvimarina pelagi HTCC2506]
Length = 241
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 92/236 (38%), Positives = 147/236 (62%), Gaps = 1/236 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++ ++LGVR +GE ++I E+MTR GRHLG VR G+S M+P+LQ GN V +WR+
Sbjct: 1 MEWREEGVVLGVRRHGETSVIAELMTRSRGRHLGLVRGGRSKAMRPVLQPGNSVMAHWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E + S L+ S++ L+G+Q R L ER+P LYD L + +
Sbjct: 61 RLDEHMGAFALEPVASRAGGLMESTVGLHGVQLAASHLRLLAERDPHPRLYDGLIVLIEN 120
Query: 121 HKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++ ++ EL +L+ +GFGLDL +C +G +DL++VSPKSG AV R G PY
Sbjct: 121 LNADRLTAGELMLRFELAVLEELGFGLDLARCAASGTKEDLVYVSPKSGRAVSREPGEPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+K+L LP+FL ++ D ++L++ F LT YFL+++ + + R +F+
Sbjct: 181 HDKLLALPAFLTDTDRAADGETLRTGFTLTRYFLSRHVYEPRGLDEPHSRTSFISA 236
>gi|121601946|ref|YP_988791.1| DNA repair protein RecO [Bartonella bacilliformis KC583]
gi|166221884|sp|A1US38|RECO_BARBK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|120614123|gb|ABM44724.1| DNA repair protein RecO [Bartonella bacilliformis KC583]
Length = 245
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R YGE ++ILEV+TRQ+GR++G V+ G+S RM +LQ GN V W +
Sbjct: 1 MKWKEQAIILGARQYGETSVILEVVTRQHGRYMGVVKGGRSRRMAALLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E L+ ++L+ LYGLQ + FR LPER+P LYD+L++F+
Sbjct: 61 RLDEHLGLFKLEALDLCASRLMFLPEALYGLQLMASHFRLLPERDPHPILYDILHLFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V ++ V+ E+ LL+ +GFGLDL+ C VTG + L +VSPKSG AVC VGLP+
Sbjct: 121 FDEQFVNAELLVRFEMRLLEELGFGLDLSHCAVTGRQEKLYYVSPKSGRAVCEEVGLPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
K+L+LP FL + +D D +++ F LTD+FL ++ + I +R +
Sbjct: 181 NKLLLLPKFLIERTNRPVDFDDIRNGFTLTDFFLTRHVWEPRGIKQPSVRAILIQLFER 239
>gi|260432760|ref|ZP_05786731.1| DNA repair protein RecO [Silicibacter lacuscaerulensis ITI-1157]
gi|260416588|gb|EEX09847.1| DNA repair protein RecO [Silicibacter lacuscaerulensis ITI-1157]
Length = 241
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE I+EV T +GRH G VR G S ++ PILQ G + V WR+
Sbjct: 1 MDWRDHGILLTARRHGETAAIIEVFTETHGRHAGVVRGGASRKIAPILQPGAQLDVLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +++G F+ E L S A S L L GL ++V L FLPEREP +Y ++
Sbjct: 61 RLQEHIGTFQVEPLRSRAAAAFSGRLALSGLNAVVALLSFFLPEREPHPGIYRQTEQLMD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ EL LL+ +GFGLDLT+C VTG T+ L +VSPK+G AV +
Sbjct: 121 LLGQDEIWPLAYLRWELALLEELGFGLDLTRCAVTGTTEGLAYVSPKTGRAVSAEGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL-QHNIIHCHLLRENFLGKLLE 238
A+++L LP L + D D + + + T YFL R F+ +
Sbjct: 181 ADRLLPLPPVLRGQGGAPD-DEIAAGLRTTGYFLAHRVAPSLGHTPLPEARARFVDQFTR 239
Query: 239 LI 240
+
Sbjct: 240 RL 241
>gi|299135099|ref|ZP_07028290.1| DNA repair protein RecO [Afipia sp. 1NLS2]
gi|298590076|gb|EFI50280.1| DNA repair protein RecO [Afipia sp. 1NLS2]
Length = 249
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 92/241 (38%), Positives = 133/241 (55%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILG R +GE + I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDEGIILGTRRHGESSAIVELLTRSHGRHLGLVRGGAGTRMRPLLQPGNSVSAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E + A +L+ YG+ + L R LPER P +Y++L L+
Sbjct: 61 RLDEHLGYYAIEGTQLRAATMLACPHAAYGITHLAALARLLPERAPHDGIYELLEAILDD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P V V+ E+ +L +GFGLDL+ C TG DL++VSPKSG AV R+ G P+
Sbjct: 121 FDEPVVAATHVVRFEMAMLDELGFGLDLSSCAATGAQADLIYVSPKSGCAVSRAAGEPWR 180
Query: 181 EKMLVLPSFLWKEEQT---IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
E++L LP FL + + F+LT FL + L+ R+ F+ +
Sbjct: 181 ERLLPLPPFLRAGHEDSGAETERDMMEGFRLTGLFLLRNVLEPRGQGHSDARDGFIAAVA 240
Query: 238 E 238
Sbjct: 241 R 241
>gi|254461391|ref|ZP_05074807.1| DNA repair protein RecO [Rhodobacterales bacterium HTCC2083]
gi|206677980|gb|EDZ42467.1| DNA repair protein RecO [Rhodobacteraceae bacterium HTCC2083]
Length = 244
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 89/243 (36%), Positives = 129/243 (53%), Gaps = 5/243 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE N I++V T ++GRH G VR G S ++ PILQ G + V+WR+
Sbjct: 1 MEWRDQGILLSVRRHGETNAIIDVFTIEHGRHAGIVRGGTSRKIAPILQPGAQLDVSWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL +LG + E L S A L L L GL ++ L F LPERE LY L+
Sbjct: 61 RLEDHLGTYTVEPLRSRAAAALGDRLSLAGLNAVTALLAFALPEREANTRLYKQSEQLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
V +++ E+ LL+ G GLDL+ C VTG ++L+++SP++G AV V P+
Sbjct: 121 LLGQHEVWPLAYLRFEMALLEACGMGLDLSACAVTGTNENLIYISPRTGRAVSEQVAGPW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
K+L LP L + DA ++ A + T YFL++ L R ++
Sbjct: 181 VNKLLPLPPILIGQGMGSDA-EIEQALRTTGYFLSQK-LAPSLGNRSLPEARGRYVDLFS 238
Query: 238 ELI 240
LI
Sbjct: 239 RLI 241
>gi|254476248|ref|ZP_05089634.1| DNA repair protein RecO [Ruegeria sp. R11]
gi|214030491|gb|EEB71326.1| DNA repair protein RecO [Ruegeria sp. R11]
Length = 241
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L +R +GE + I+++ T ++GRH G +R G S +M PILQ G + + WR+
Sbjct: 1 MEWRDQGILLRMRRHGEGSAIVDMFTAEHGRHAGVIRGGASRKMAPILQPGAQLDLLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG ++ E++ S LS L L GL ++ L LP+REP +LY L+
Sbjct: 61 RLEDHLGSYQAELMRSRAGAALSGRLALAGLNAVTGLLAFCLPDREPHPDLYLRSERLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++Q E+ LL+ +GFGLDL+ C V+G +L+++SPKSG AV R+ +
Sbjct: 121 LLGQDEIWPLAYLQWEMALLEELGFGLDLSCCAVSGALDELIYISPKSGRAVSRASAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A ++L LP+ + E + + T +FL + L R FL L
Sbjct: 181 AHRLLPLPAVMRGEGEAGT-GEILQGLSTTGFFLE-HRLAPSLGNTPLPEARGRFLDVLT 238
Query: 238 E 238
Sbjct: 239 R 239
>gi|49475306|ref|YP_033347.1| DNA repair protein RecO [Bartonella henselae str. Houston-1]
gi|61215010|sp|Q6G457|RECO_BARHE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|49238112|emb|CAF27319.1| DNA repair protein reco [Bartonella henselae str. Houston-1]
Length = 256
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R YGE ++ILEVMTRQ+GR++G V+ G+S RM +LQ GN V W +
Sbjct: 1 MKWKEQAIILGTRQYGETSVILEVMTRQHGRYMGVVKGGRSRRMAVLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ H A+L+ LY LQ IV LPER+P LYD+L++F+
Sbjct: 61 RLDEHLGLFRLEALDLHAARLILFPEALYALQLIVFHLHLLPERDPHPILYDILHLFMQS 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + ++ V+ E+ L+ +GFGLDL++C TG + L +VSPKSG AVC G P+
Sbjct: 121 FDEPFINAELLVRFEMRFLEELGFGLDLSRCAATGRLEKLCYVSPKSGRAVCEEAGHPWR 180
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
EK+L LP FL + + +D +K+ F LT +FL ++ + I +R + + +
Sbjct: 181 EKLLNLPQFLVQRTVRPVDFSDIKNGFILTGFFLMRHVWEPRNIKQPSVRISLIQLFEQ 239
>gi|218461899|ref|ZP_03501990.1| DNA repair protein RecO [Rhizobium etli Kim 5]
Length = 256
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I+EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWQDHAIILGVKRHGETSVIVEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGARSDLAYVSPKSGRAVSRSAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL D DSL +AF+LT +FL+++ + + R+ F+ L+
Sbjct: 181 DKMLLLPPFLGVDGNHAADFDSLAAAFRLTGFFLHRHVYEPRGMEASAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|110633306|ref|YP_673514.1| DNA repair protein RecO [Mesorhizobium sp. BNC1]
gi|119361464|sp|Q11JS6|RECO_MESSB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|110284290|gb|ABG62349.1| DNA replication and repair protein RecO [Chelativorans sp. BNC1]
Length = 248
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 100/241 (41%), Positives = 147/241 (60%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ I+LG R +GE ++ILE +T +GRHLG VR G+S RMQP+LQ GN V + WR+
Sbjct: 1 MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E LE + A+LL+S++ +YG+Q + R LPER+P L++ L +
Sbjct: 61 RLDEHLGLFQVEPLELNAARLLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G + + EL +L +GFGLDL +C VTG +DL +VSPK+G AV R G P+A
Sbjct: 121 LDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDLAYVSPKTGRAVTREAGAPWA 180
Query: 181 EKMLVLPSFLWKEEQT-IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP+FL + D L AF LT +F ++ + + R FL ++
Sbjct: 181 DKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|83855024|ref|ZP_00948554.1| DNA repair protein RecO [Sulfitobacter sp. NAS-14.1]
gi|83842867|gb|EAP82034.1| DNA repair protein RecO [Sulfitobacter sp. NAS-14.1]
Length = 245
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 3/240 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE + I+EV T + GRH G VR G S ++ PILQ G + + WR+
Sbjct: 1 MEWRDQGILLSARRHGETSAIIEVFTPERGRHAGIVRGGTSRKIAPILQPGAQLDIAWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL ++G F E + S A + L L GL ++ L F LPERE LY L+
Sbjct: 61 RLEDHIGAFTVEPVRSRAALAMHDRLSLAGLNAVTGLLAFALPEREAHPPLYRRTEALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++Q E+ LL +G+GLDL+ C VTG T L++VSPK+G AV R +
Sbjct: 121 LLGQGDLWPLAYLQWEISLLDELGYGLDLSACAVTGRTSGLVFVSPKTGRAVTREGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLLE 238
+KML L L E DA + AF+ T YFL ++ + R ++
Sbjct: 181 VDKMLPLSPVLRGEGDASDA-DIALAFKTTGYFLERHLARDLGDKPLPEARARYVEAFSR 239
>gi|149200802|ref|ZP_01877777.1| DNA repair protein RecO [Roseovarius sp. TM1035]
gi|149145135|gb|EDM33161.1| DNA repair protein RecO [Roseovarius sp. TM1035]
Length = 244
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 5/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE ++I+EV T + GRH G VR G S +M P+LQ G + + WR+
Sbjct: 1 MDWRDQGILLNSRRHGESSVIIEVFTPERGRHAGVVRGGASRKMAPVLQPGAQLDLEWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++G FR E L+S + L LPERE ELY I L+
Sbjct: 61 RLEDHIGTFRVEPLKSRAWTMGDRMALAGLNAVCALLLFVLPEREAHAELYRKTLILLDI 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLPY 179
P + ++ E+ LL+ +GFGLDL +C V G DL ++SPK+G AV R+ +
Sbjct: 121 LDQPEIWTLAYLNWEMALLEEMGFGLDLRRCAVLGEKANDLSYISPKTGRAVSRAGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKL 236
A+++L LP L D + F++T FL + L R ++ +
Sbjct: 181 ADRLLPLPPCLMGHGPAPD-GEILQGFEVTGQFL-RNHLAPQLGNRPLPEARARYVARF 237
>gi|209884979|ref|YP_002288836.1| DNA repair protein RecO [Oligotropha carboxidovorans OM5]
gi|229470366|sp|B6JGG5|RECO_OLICO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|209873175|gb|ACI92971.1| DNA repair protein RecO [Oligotropha carboxidovorans OM5]
Length = 249
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 132/241 (54%), Gaps = 3/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD IILG R +GE N I+E++TR +GRHLG VR G RM+P+LQ GN V WR+
Sbjct: 1 MEWTDDGIILGTRRHGEANAIVELLTRSHGRHLGLVRGGAGTRMRPLLQPGNSVGAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E A +LS S YG+ + L R LPER P +Y+ L
Sbjct: 61 RLDEHLGYYALEGTRLRAATMLSYSHAAYGITHLAALARLLPERAPHDGIYEQFEAILED 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + V+ E+ +L+ +GFGLDL+ C TG DL++VSPKSG AV RS G P+
Sbjct: 121 FDDPVIAATHVVRFEMAMLEELGFGLDLSCCAATGTHTDLIYVSPKSGCAVSRSAGEPWR 180
Query: 181 EKMLVLPSFLWKEEQTIDAD---SLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
E++L LP+FL + D + F+LT FL + L+ R F+ +
Sbjct: 181 ERLLPLPAFLRAGNEESSPDGEADIMEGFRLTGMFLLRNVLEPRGQAHSDARAGFIAAVA 240
Query: 238 E 238
Sbjct: 241 R 241
>gi|49474068|ref|YP_032110.1| DNA repair protein RecO [Bartonella quintana str. Toulouse]
gi|61215004|sp|Q6G080|RECO_BARQU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|49239572|emb|CAF25929.1| DNA repair protein recO [Bartonella quintana str. Toulouse]
Length = 243
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ A+ILG R YGE +IILEVMTRQ+GR++G V+ G S RM +LQ GN V W +
Sbjct: 1 MKWKEQAVILGTRQYGETSIILEVMTRQHGRYMGIVKGGHSRRMAGLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ + A+L+ LY LQ IV R LPER+P LYD+L++F+
Sbjct: 61 RLDEHLGLFRLEALDLYAARLILLPEALYALQLIVFHLRLLPERDPYPSLYDILHLFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V ++ V+ E+ LL+ +GFGLDL++C TG + L +VSPKSG AVC G P+
Sbjct: 121 FDESFVNAELLVRFEMRLLEELGFGLDLSRCAATGRQERLFYVSPKSGRAVCEEAGRPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
EK+L LP FL + ++ + + F LT +FL ++ + I +R N +
Sbjct: 181 EKLLTLPQFLVRRAIRPVNFSDIINGFILTGFFLMRHVWEPRGIKQPSVRVNLIQLFER 239
>gi|86357032|ref|YP_468924.1| DNA repair protein RecO [Rhizobium etli CFN 42]
gi|119361475|sp|Q2KAD9|RECO_RHIEC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|86281134|gb|ABC90197.1| DNA repair protein [Rhizobium etli CFN 42]
Length = 256
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I EVMTR GRHLG VR+G+S M+P+LQ GN V V WR+
Sbjct: 1 MQWQDQAIILGVKRHGETSVIAEVMTRGRGRHLGLVRSGRSRAMRPVLQPGNAVEVVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMDTATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGARSDLAYVSPKSGRAVSRSAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + I R+ F+ L+
Sbjct: 181 DKMLLLPPFLGVEGNHAADVDSLAAAFRLTGFFLHRHVYEPRGIEAVAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|222085393|ref|YP_002543923.1| DNA repair protein RecO [Agrobacterium radiobacter K84]
gi|254790503|sp|B9JC76|RECO_AGRRK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|221722841|gb|ACM25997.1| DNA repair protein RecO [Agrobacterium radiobacter K84]
Length = 259
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ GE ++I EVMTR GRH+G VR+G+S MQP+LQ GNLV V WR+
Sbjct: 1 MQWQDHAIILGVKRLGETSVIAEVMTRDRGRHMGLVRSGRSRSMQPVLQPGNLVEVTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P LYD L++ L
Sbjct: 61 RLHEHLGEFRMEPVRLRAARLMETATAVYGVQAMGALLRLLPERDPHPYLYDALDVILEN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P G++FV+ EL +L +G+GLDL +C TGV DL +VSPK+G AVCR+ G P+A
Sbjct: 121 MQNPMDAGELFVRFELAVLNELGYGLDLGECAATGVRDDLAFVSPKTGRAVCRTAGAPWA 180
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML LP FL + + +SL +AF+LT +FL+++ + I RE F+ L+
Sbjct: 181 DKMLALPPFLAAGTVEAANGESLAAAFRLTGFFLHRHVYEPRGIEIAAAREGFIQAALKA 240
Query: 240 I 240
+
Sbjct: 241 V 241
>gi|221234572|ref|YP_002517008.1| DNA repair protein RecO [Caulobacter crescentus NA1000]
gi|254790515|sp|B8GVD0|RECO_CAUCN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|220963744|gb|ACL95100.1| DNA repair protein recO [Caulobacter crescentus NA1000]
Length = 243
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 1/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+A +L RS+GE I+E++T G+ V S RM+P LQ G V V +R+
Sbjct: 1 MEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFLN 119
++ LG E + + L L L GL + + + L +
Sbjct: 61 KVEGQLGSATLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+IP + ++V+ E LL+ +GFGLDL+KC TG DL++VSP++G AV R G PY
Sbjct: 121 VLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAATGAFDDLVYVSPRTGRAVSREAGKPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP F+ + + +K+ +T +FL ++ R L +L E
Sbjct: 181 HDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWLLDRLAEA 240
>gi|126739720|ref|ZP_01755412.1| DNA repair protein RecO [Roseobacter sp. SK209-2-6]
gi|126719366|gb|EBA16076.1| DNA repair protein RecO [Roseobacter sp. SK209-2-6]
Length = 251
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 5/242 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W+D I+L R +GE + I++V T ++GRH G VR G S R+ PILQ G + + WR+R
Sbjct: 12 EWRDHGILLSARRHGESSAIIDVFTEEHGRHAGVVRGGASRRLAPILQPGAQLDLLWRAR 71
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLNC 120
L ++LG ++ E L S +S L L GL ++ L LPEREP LY L+
Sbjct: 72 LEEHLGSYQAEPLRSRAVAAMSGRLALSGLNAVTALLGFCLPEREPHPALYASSERLLDL 131
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + +++ E+ LL+ +GFGLDL C V+G ++L +VSP++G AV R P+
Sbjct: 132 LEQEELWPLAYLRWEMELLEEMGFGLDLLACAVSGRNEELAYVSPRTGRAVSRQEAGPWV 191
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
++L LP + + + D + + T YFL L R FL
Sbjct: 192 ARLLPLPPVMLGKGEAPD-HEIAEGLKTTGYFLETR-LAPALGNRPLPEARGRFLDAFSR 249
Query: 239 LI 240
+
Sbjct: 250 RL 251
>gi|83941547|ref|ZP_00954009.1| DNA repair protein RecO, putative [Sulfitobacter sp. EE-36]
gi|83847367|gb|EAP85242.1| DNA repair protein RecO, putative [Sulfitobacter sp. EE-36]
Length = 245
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 3/240 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE + I+EV T + GRH G VR G S ++ PILQ G + + WR+
Sbjct: 1 MEWRDQGILLSARRHGETSAIIEVFTPERGRHAGIVRGGTSRKIAPILQPGAQLDIAWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL ++G F E + S A + L L GL ++ L F LPERE LY L+
Sbjct: 61 RLEDHIGAFTVEPVRSRAALAMHDRLSLAGLNAVTGLLAFALPEREAHAPLYRRTEALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++Q E+ LL +G+GLDL+ C VTG T L++VSPK+G AV R +
Sbjct: 121 LLGQGDLWPLAYLQWEISLLDELGYGLDLSACAVTGRTSGLVFVSPKTGRAVTREGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLLE 238
+KML L L E DA + AF+ T YFL ++ + R ++
Sbjct: 181 VDKMLPLSPVLRGEGDASDA-DIALAFKTTGYFLERHLARDLGDKPLPEARARYVEAFSR 239
>gi|110678689|ref|YP_681696.1| DNA repair protein RecO [Roseobacter denitrificans OCh 114]
gi|119361483|sp|Q16AI3|RECO_ROSDO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|109454805|gb|ABG31010.1| DNA repair protein RecO [Roseobacter denitrificans OCh 114]
Length = 241
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 120/242 (49%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++ I+L R +GE I+EV T +GRH G VR G S ++ PILQ G + + WR+
Sbjct: 1 MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
RL ++G F E + S A + L L GL ++ L LPERE LY L+
Sbjct: 61 RLEDHIGSFLVEPVRSRAAAAMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ E+ LL ++G+ L L C VTG DL++VSPKSG AV +
Sbjct: 121 LLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDDLIYVSPKSGRAVSAKGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH-NIIHCHLLRENFLGKLLE 238
A+++L LP L DA + AF T YFL ++ + R F+
Sbjct: 181 ADRLLPLPPILRGIGGGPDA-EIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSR 239
Query: 239 LI 240
+
Sbjct: 240 RL 241
>gi|241203893|ref|YP_002974989.1| DNA repair protein RecO [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857783|gb|ACS55450.1| DNA repair protein RecO [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 256
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 164/241 (68%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I+EVMTR GRHLG VR+G+S MQP+LQAGN V V WR+
Sbjct: 1 MQWQDHAIILGVKRHGETSVIVEVMTRDRGRHLGLVRSGRSRAMQPVLQAGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL++VSPKSG AV R+ G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGARSDLVYVSPKSGRAVSRAAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D +SL +AF+LT +FL+++ + I R+ F+ L+
Sbjct: 181 DKMLLLPPFLRIEGNHAADFESLSAAFRLTGFFLHRHVYEPRGIEAVAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|254436668|ref|ZP_05050162.1| DNA repair protein RecO [Octadecabacter antarcticus 307]
gi|198252114|gb|EDY76428.1| DNA repair protein RecO [Octadecabacter antarcticus 307]
Length = 242
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 4/242 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+D+ ++ VR +GE + I+EV T G G VR G S ++ P LQ G + V W+
Sbjct: 1 MIEWRDEGALVRVRKHGESSAIIEVFTASRGLTAGIVRGGTSRKIAPTLQPGAQLDVTWK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL +LG F E + S A+++ L L GL ++ L F LP+RE LY L
Sbjct: 61 ARLEDHLGSFTVEPIRSRTAQVMQDRLALAGLNAVTGLLSFLLPDREAHAPLYARTIQLL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ V ++Q E+ LL +GFG+DL+ C V+G+ DL +VSP++G AV R
Sbjct: 121 DLLGQNDVWPLAYLQWEVALLDEMGFGMDLSACAVSGLNDDLFYVSPRTGRAVSRLAAGE 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLL 237
+A+++L LP L + D + + A + T +FLN + + R+ + +
Sbjct: 181 WADRLLPLPHVLLGKGDA-DLNEIVLALRTTGHFLNNHLAKSLGDRPIPEARQRLIDAMK 239
Query: 238 EL 239
L
Sbjct: 240 RL 241
>gi|300023747|ref|YP_003756358.1| DNA repair protein RecO [Hyphomicrobium denitrificans ATCC 51888]
gi|299525568|gb|ADJ24037.1| DNA repair protein RecO [Hyphomicrobium denitrificans ATCC 51888]
Length = 239
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 90/237 (37%), Positives = 131/237 (55%), Gaps = 1/237 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+AI+L V+ +GE ++E+ TR +GRHLG V G+S R++PILQ GN V W++
Sbjct: 1 MQWTDEAIVLSVKPHGETAAVIELWTRTHGRHLGLVHGGRSRRLRPILQPGNHVDATWKA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL+ LG E+ + A+ L + L L ++ L LPER+P LY++ L
Sbjct: 61 RLSDQLGHVTIEMRRAFAAETLDDAAALAALSTLTTLTHLLPERDPHPNLYEITLFVLGF 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+V + V+ EL LL+ +GFGLDL++C TG L++VSP++G AV S G PY
Sbjct: 121 LNDATVWPALLVRWELALLEELGFGLDLSQCAATGSNDQLIYVSPRTGRAVSASAGEPYR 180
Query: 181 EKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+K+L LP+FL K + D ++ F LT +FL L R L L
Sbjct: 181 DKLLPLPAFLTKHRSGHVTEDDIRLGFALTGHFLETRVLLPRGQSLPQPRSRLLAHL 237
>gi|163867994|ref|YP_001609198.1| DNA repair protein RecO [Bartonella tribocorum CIP 105476]
gi|189039650|sp|A9IRN6|RECO_BART1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|161017645|emb|CAK01203.1| DNA repair protein RecO [Bartonella tribocorum CIP 105476]
Length = 248
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ A+ILGVR YGE ++ILE++TR+ GR++G V+ G+S RM +LQ GN V W +
Sbjct: 1 MKWKEQAVILGVRQYGETSVILEIITRERGRYMGVVKGGRSRRMAALLQPGNFVEAEWSA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ H A+L+ LY LQ I R LPER+P LYD+L++F+
Sbjct: 61 RLEEHLGLFRLEALDFHAARLICLPEALYALQLIAFHLRLLPERDPHPVLYDILHLFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P V ++ V+ E+ LL+ +GFGLDL+ C TG Q L +VSPKSG AVC G P+
Sbjct: 121 FDEPFVNAELLVRFEMRLLEELGFGLDLSCCAATGRKQKLYYVSPKSGRAVCEEAGEPWK 180
Query: 181 EKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + + D + + F LT +FL +Y + I +R N +
Sbjct: 181 KKLLILPQFLVQRATRPADFRDIINGFNLTSFFLMRYVWEPRDIKQPSVRTNLIQLFER 239
>gi|126728495|ref|ZP_01744311.1| DNA repair protein RecO [Sagittula stellata E-37]
gi|126711460|gb|EBA10510.1| DNA repair protein RecO [Sagittula stellata E-37]
Length = 241
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L R +GE ++IL+V T + GRH G +R G S +M P LQ G + ++WR+
Sbjct: 1 MEWRDTGILLATRRHGETSLILDVFTPERGRHSGVLRGGTSRKMAPHLQPGAQLDLSWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++G F E S A+ L L L GL ++V L R LPER P +LY L+
Sbjct: 61 RLEDHMGAFTVEPQRSRAAQALGDRLALAGLNAVVALLRFCLPERVPHPDLYTFSEQLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
P + +++ E+ LL+ +GF LDL+ C VTG T+ L++VSPKSG AV +
Sbjct: 121 LLDQPDLWPLAYLRWEMALLEEMGFALDLSCCAVTGRTEGLVYVSPKSGRAVTAEGAGNW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
+L LP + D + +A T YFL + L R + ++
Sbjct: 181 VHHLLPLPEVMLGRGAA-DNPEVATALGTTGYFLE-HRLAPQMGDKPVPEARARLIERIR 238
Query: 238 E 238
+
Sbjct: 239 Q 239
>gi|327191326|gb|EGE58359.1| DNA repair protein (recombination protein O) [Rhizobium etli
CNPAF512]
Length = 281
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILG++ +GE ++I EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 26 MQWQDHAIILGIKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 85
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 86 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 145
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 146 LHNPADAGELFVRFELAVLNDLGFGLDLGECAATGARSDLAYVSPKSGRAVSRSAGAPWA 205
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + + R+ F+ L+
Sbjct: 206 DKMLLLPPFLGVEGNHAADFDSLAAAFRLTGFFLHRHVYEPRGMEAAAARDGFVQAALKA 265
Query: 240 I 240
+
Sbjct: 266 L 266
>gi|218509904|ref|ZP_03507782.1| DNA repair protein RecO [Rhizobium etli Brasil 5]
Length = 245
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILG++ +GE ++I EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWQDHAIILGIKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLGECAATGARSDLAYVSPKSGRAVSRSAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + + R+ F+ L+
Sbjct: 181 DKMLLLPPFLGVEGNHAADFDSLAAAFRLTGFFLHRHVYEPRGMEAAAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|190891077|ref|YP_001977619.1| DNA repair protein (recombination protein O) [Rhizobium etli CIAT
652]
gi|238692513|sp|B3PUP2|RECO_RHIE6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|190696356|gb|ACE90441.1| DNA repair protein (recombination protein O) [Rhizobium etli CIAT
652]
Length = 256
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILG++ +GE ++I EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWQDHAIILGIKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLGECAATGARSDLAYVSPKSGRAVSRSAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + + R+ F+ L+
Sbjct: 181 DKMLLLPPFLGVEGNHAADFDSLAAAFRLTGFFLHRHVYEPRGMEAAAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|325292418|ref|YP_004278282.1| DNA repair protein RecO [Agrobacterium sp. H13-3]
gi|325060271|gb|ADY63962.1| DNA repair protein RecO [Agrobacterium sp. H13-3]
Length = 254
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 167/241 (69%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD+AIILGV+ +GE ++I EVMTR GRHLG VR G+S MQP+LQAGN V V WR+
Sbjct: 1 MQWQDEAIILGVKRHGETSVIAEVMTRLRGRHLGMVRGGRSRSMQPVLQAGNRVDVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +LGEFR E L+ A+L+ ++ +YG+Q++ L R LPER+P LY L++ L+
Sbjct: 61 RLDDHLGEFRIEPLQLRAAQLMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++FV+ EL +L ++GFGLDLT+C TG+ DL++VSPK+G AVC + G PYA
Sbjct: 121 LHDPVDAGELFVRFELAVLNDLGFGLDLTECAATGLRTDLIYVSPKTGRAVCSTAGAPYA 180
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
E+ML LP+FL + + + D DSL +AF+LT +FL+++ ++ + R+ F+ L+
Sbjct: 181 ERMLSLPAFLGEGQSKAADRDSLAAAFRLTGHFLHRHVYDPRGLNENAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|209548606|ref|YP_002280523.1| DNA repair protein RecO [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|238058646|sp|B5ZW78|RECO_RHILW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|209534362|gb|ACI54297.1| DNA repair protein RecO [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 256
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 162/241 (67%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I EVMTR GRHLG VR+G+S MQP+LQAGN V V WR+
Sbjct: 1 MQWQDHAIILGVKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQAGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKSG AV RS G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGARSDLAYVSPKSGRAVSRSAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + I R+ F+ L+
Sbjct: 181 DKMLLLPPFLGIEGNHAADFDSLSAAFRLTGFFLHRHVYEPRGIEAAAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|114770109|ref|ZP_01447647.1| DNA repair protein RecO [alpha proteobacterium HTCC2255]
gi|114548946|gb|EAU51829.1| DNA repair protein RecO [alpha proteobacterium HTCC2255]
Length = 243
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W + +I+ VR YGE ++I++ +T ++GRHLG VR G S +M +Q G+ V++ WR+
Sbjct: 1 MEWTSEGVIVSVRKYGENSVIIDTLTPKHGRHLGVVRGGASRKMAATIQPGSQVKLEWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E LES + PER P ELY+ ++
Sbjct: 61 RLEEHLGNFRVEQLESRSDMFDDRLRLAALSSICSIVTFSFPERMPVAELYNSTLNLMDT 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ EL +L+ +GFGLDLT C VT VTQDL++VSPKSG AV R +
Sbjct: 121 LNTGGDWKPLYALWELQVLEEMGFGLDLTSCAVTNVTQDLIYVSPKSGRAVSRKAAGEWK 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLLE 238
E++L LPSFL + +T + + + ++ + T +FL+ + R + +L
Sbjct: 181 ERLLPLPSFLRNKFETANHEDILNSLKTTGHFLSSWLATSLGERKLPEARNRLISRLEN 239
>gi|298291623|ref|YP_003693562.1| DNA repair protein RecO [Starkeya novella DSM 506]
gi|296928134|gb|ADH88943.1| DNA repair protein RecO [Starkeya novella DSM 506]
Length = 243
Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats.
Identities = 95/229 (41%), Positives = 129/229 (56%), Gaps = 1/229 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ IILG+R +GE N I+E+MT +GRHLG VR G S R LQ GN V+ WR+
Sbjct: 1 MEWSDEGIILGLRRHGEGNAIVELMTAAHGRHLGLVRGGGSRRQAAALQPGNGVQATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F EV +L+ ++ + L I L R LPER+P EL+D+L +
Sbjct: 61 RLDEHLGTFALEVTTPRAGRLMGAAHSAFALSHIGSLIRMLPERDPHPELHDVLTAMVEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + G + + ELM+L +GFGLDL C TG DLL+VSPKSG AV R G P+
Sbjct: 121 LDEPRLTGMMMARFELMMLSELGFGLDLESCAATGGRNDLLYVSPKSGRAVSRDAGEPWR 180
Query: 181 EKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
++L LP FL E + + +AF LT +FL + + I
Sbjct: 181 AQLLNLPYFLIGEVAEPPSPGDVDAAFDLTGHFLARRVFEPRGIPMPES 229
>gi|295690015|ref|YP_003593708.1| DNA repair protein RecO [Caulobacter segnis ATCC 21756]
gi|295431918|gb|ADG11090.1| DNA repair protein RecO [Caulobacter segnis ATCC 21756]
Length = 243
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 1/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+A +L RS+GE I+E++T+ G+ V S RM+P LQ G V +R+
Sbjct: 1 MEWEDEAYVLSARSHGETGAIVELLTQDRGKFAAHVAGAASRRMKPFLQPGARVIARYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFLN 119
R++ LG E + + L L L GL + + + L +
Sbjct: 61 RMSDQLGSASLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ + ++V+ E LL+ +GFGLDL++C TGV DL++VSP++G AV R G PY
Sbjct: 121 VLEVSEIWPAVYVRYEAGLLQELGFGLDLSRCAATGVFDDLVYVSPRTGRAVSREAGRPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP F+ + + +K+ +T +FL ++ R L +L E
Sbjct: 181 HDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARMWLLDRLTEA 240
>gi|163733859|ref|ZP_02141301.1| DNA repair protein RecO [Roseobacter litoralis Och 149]
gi|161392970|gb|EDQ17297.1| DNA repair protein RecO [Roseobacter litoralis Och 149]
Length = 241
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++ I+L R +GE I+EV T +GRH G VR G S ++ PILQ G + + WR+
Sbjct: 1 MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
RL ++G F E + S A + L L GL ++ L LPERE LY L+
Sbjct: 61 RLEDHIGSFHVEPVRSRAAAAMGDRLALAGLNAVTALLGFCLPEREAHRALYLETERLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + +++ E+ LL +G+ L+L +C VTG DL++VSPKSG AV +
Sbjct: 121 LLEEGELWPLAYLRWEVQLLHEMGYALELDQCAVTGQRDDLIYVSPKSGRAVSAQGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH-NIIHCHLLRENFLGKLLE 238
AE++L LP L DA + AF T YFL ++ + R F+
Sbjct: 181 AERLLPLPPILRGVGGGPDA-EIAQAFVTTGYFLTEHLARDLGGKPLPEARARFVETFSR 239
Query: 239 LI 240
+
Sbjct: 240 RL 241
>gi|99082396|ref|YP_614550.1| DNA repair protein RecO [Ruegeria sp. TM1040]
gi|119361485|sp|Q1GDH8|RECO_SILST RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|99038676|gb|ABF65288.1| DNA repair protein RecO [Ruegeria sp. TM1040]
Length = 241
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE + ++EV T +G H G VR G S +M P LQ G + + W +
Sbjct: 1 MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL +LG ++ E L S LS L L GL ++ L F LP+R P LY + L+
Sbjct: 61 RLEDHLGTYKAEPLRSRAGMALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ EL LL+++G+GLDL+ C TGVTQDL +VSPK+G AV + +
Sbjct: 121 LLDSEDLWPLAYLRWELSLLEDLGYGLDLSACAATGVTQDLRYVSPKTGRAVSGAAAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN-KYALQHNIIHCHLLRENFLGKLLE 238
A+++L LP + E D + +A + T +FL K A R FL L
Sbjct: 181 ADRLLPLPPVMRGEGAAEDI-EILTALRTTGFFLESKLAPALGNRPIPEARGRFLDALAR 239
Query: 239 LI 240
+
Sbjct: 240 RV 241
>gi|315499944|ref|YP_004088747.1| DNA repair protein reco [Asticcacaulis excentricus CB 48]
gi|315417956|gb|ADU14596.1| DNA repair protein RecO [Asticcacaulis excentricus CB 48]
Length = 239
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++DDA +L R +GE ++ +T ++G V G S R++P LQ + VR+++R+
Sbjct: 1 MTFEDDAFVLSARPHGETGAVVHFLTLEHGHIAAHVPGGASRRLKPYLQPASRVRLSYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
R A LG E A++ + L G+Q + R LPERE + +N
Sbjct: 61 RTADQLGSATLEPEGDATAEIFDDPMALIGVQCACVMTRAVLPEREAYPGAFYAFETLIN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+P V ++V+ E+ LL+ +GFGLDL+ C V+G DL +VSP+S AV R G PY
Sbjct: 121 AFGLPGVWPYVYVRFEMGLLEAVGFGLDLSACAVSGSRDDLAYVSPRSARAVSRREGEPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L LP FL + + AD L+ LT +FL ++ +R + + +
Sbjct: 181 KDKLLPLPGFLLSSQGGVQADDLRRGLDLTGFFLERHIFHPLNQPLPEIRTRLIDSVRD 239
>gi|144899859|emb|CAM76723.1| DNA repair protein RecO [Magnetospirillum gryphiswaldense MSR-1]
Length = 250
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/237 (36%), Positives = 120/237 (50%), Gaps = 1/237 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+L VR GE I+ + TR +GRH G V G + LQ GNLV+ +WR+
Sbjct: 1 MDWTDDGIVLAVRRLGEAGIVASLFTRSHGRHPGMVPGGAGRANRAALQPGNLVQASWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG +R E+ E+H AK L + L L S L L L
Sbjct: 61 RLPEQLGTYRLELAEAHSAKALDDAGCLAALTSACALCEALLPERQPHAPLFDALSALLV 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++V EL LL+ +G+GLDL+ C TG T DL++VSPKS AV G P+A
Sbjct: 121 SLTAPSWPSVYVHWELALLRGLGYGLDLSACAATGATTDLIYVSPKSARAVSAQAGQPHA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
K+L LP+FL + + DA + + LT YF+ ++ LQ I R + +L
Sbjct: 181 HKLLPLPAFLLGKSEG-DATDIAAGLTLTGYFIERHLLQQRHIAMPPARLRLVDRLR 236
>gi|23014388|ref|ZP_00054207.1| COG1381: Recombinational DNA repair protein (RecF pathway)
[Magnetospirillum magnetotacticum MS-1]
Length = 309
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 1/236 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+L VR +GE + ++TR +GRH G V GQ +PILQ GNLVR W
Sbjct: 74 MEWDDDGIVLAVRRHGETGAVASLLTRSHGRHAGLVHGGQGRTNRPILQPGNLVRAKWTG 133
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG F+ E+L ++ A L + L L S L + L
Sbjct: 134 RLPEQLGNFKLEMLHAYGAAFLDDAARLSALGSACALVETALAERQPHPACHAALVALLH 193
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I+V EL LL+++GFGLDL+ C TG T DL WVSPK+G AV R+ G PY
Sbjct: 194 ALEAESWPSIYVHFELALLRDLGFGLDLSACAATGQTDDLAWVSPKTGRAVSRAAGEPYR 253
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+K+ LP+FL + + DA +++ ++T +FL ++ L R +G+L
Sbjct: 254 DKLFKLPAFLVEGGEG-DAAAIREGLEMTGFFLQRHVLDSRHAVLPAARGRMIGRL 308
>gi|116251281|ref|YP_767119.1| DNA repair protein RecO [Rhizobium leguminosarum bv. viciae 3841]
gi|119361476|sp|Q1MJ50|RECO_RHIL3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|115255929|emb|CAK07010.1| putative DNA repair protein (recombination protein O) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 256
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 163/241 (67%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I EVMTR GRHLG VR+G+S MQP+LQAGN V V WR+
Sbjct: 1 MQWQDHAIILGVKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQAGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL++VSPKSG AV R+ G P+A
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGARSDLVYVSPKSGRAVSRAAGAPWA 180
Query: 181 EKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+KML+LP FL + D DSL +AF+LT +FL+++ + I R+ F+ L+
Sbjct: 181 DKMLLLPPFLSIEGNHAADFDSLSAAFRLTGFFLHRHVYEPRGIEAVAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|163740179|ref|ZP_02147573.1| DNA repair protein RecO [Phaeobacter gallaeciensis 2.10]
gi|161386037|gb|EDQ10412.1| DNA repair protein RecO [Phaeobacter gallaeciensis 2.10]
Length = 241
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ I+L +R +GE I++ T ++GRH G VR G RM P+LQ G + + WR+
Sbjct: 1 MEWRDEGILLTMRRHGESAAIVDAFTAEHGRHAGIVRGGAGRRMAPVLQPGAQLDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG ++ E++ S A +SS L L GL ++ L LPERE ELY L+
Sbjct: 61 RLEDHLGSYQAELIRSRAATAMSSRLALAGLNAVTALLAFCLPEREAHPELYLRSTQILD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ E+ LL+ +GFGL+ +C VTG DL++VSPKSG AV R +
Sbjct: 121 LLGRDDIWPLAYLRWEVALLEEMGFGLEFEQCAVTGSRLDLIYVSPKSGRAVSRRGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A++ML LP L + + +A T +FL L R + L
Sbjct: 181 ADRMLPLPPVLMGRGGAEN-SEIVTALSTTGFFLQNR-LAPSLGNHPLPEARGRLIDVLS 238
Query: 238 E 238
Sbjct: 239 R 239
>gi|304392068|ref|ZP_07374010.1| DNA repair protein RecO [Ahrensia sp. R2A130]
gi|303296297|gb|EFL90655.1| DNA repair protein RecO [Ahrensia sp. R2A130]
Length = 241
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 94/240 (39%), Positives = 141/240 (58%), Gaps = 4/240 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D AI+LGVR +GE +++ E+MTRQ GRHLG V G+S M+PILQ GN V WR+
Sbjct: 1 MEWTDQAIVLGVRKHGETSVVAELMTRQRGRHLGLVHGGRSRTMRPILQPGNRVTATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG+FR E A+L+ + +Y LQ++ R L ER+ +LYD L++ L+
Sbjct: 61 RLDEHLGQFRIEADNLRAARLMETDYAIYALQTLASHLRLLAERDAHPQLYDTLDLVLDA 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++ ++ EL LL +GFGLDL C TG +L+ VSP++G AV + PY
Sbjct: 121 LDNPAAAGELVIRFELALLDELGFGLDLNACAATGARANLVSVSPRTGRAVSGAAAAPYG 180
Query: 181 EKMLVLPSFL----WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+++L LPSFL D ++L F LT +FL++ I+ R++ + +
Sbjct: 181 DRLLALPSFLTTAQADRTSGADEETLAQGFALTGHFLHRNVFGARGINPPAERDSLIRAV 240
>gi|163738241|ref|ZP_02145657.1| DNA repair protein RecO [Phaeobacter gallaeciensis BS107]
gi|161388857|gb|EDQ13210.1| DNA repair protein RecO [Phaeobacter gallaeciensis BS107]
Length = 241
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 5/237 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ I+L +R +GE I++ T ++GRH G VR G RM P+LQ G + + WR+
Sbjct: 1 MEWRDEGILLTMRRHGESAAIVDAFTAEHGRHAGIVRGGAGRRMAPVLQPGAQLDLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG ++ E++ S A +SS L L GL ++ L LPERE ELY L+
Sbjct: 61 RLEDHLGSYQAELIRSRAATAMSSRLALAGLNAVTALLAFCLPEREAHPELYLRSTQILD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ E+ LL+ +GFGL+ +C VTG DL++VSPKSG AV R +
Sbjct: 121 LLGRDDIWPLAYLRWEVALLEEMGFGLEFEQCAVTGSRLDLIYVSPKSGRAVSRRGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLG 234
A++ML LP L + + +A T +FL L R +
Sbjct: 181 ADRMLPLPPVLMGRGGAEN-SEIVTALSTTGFFLQNR-LAPSLGNHPLPEARGRLID 235
>gi|307320728|ref|ZP_07600140.1| DNA repair protein RecO [Sinorhizobium meliloti AK83]
gi|306893655|gb|EFN24429.1| DNA repair protein RecO [Sinorhizobium meliloti AK83]
Length = 259
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 165/240 (68%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+AIILG+R +GE ++I EVMT +GRHLG VR+G+S MQP+LQ GN V V+WR+
Sbjct: 13 MQWSDEAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRTMQPVLQPGNSVEVSWRA 72
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E L+ A+L+ ++ +YG+Q++ L R LPER+P LY+ L + ++
Sbjct: 73 RLDEHLGEFRVEPLQLRAARLIETATSVYGIQALGALLRLLPERDPHPHLYEALAVIVDH 132
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P+ G++FV+ EL +L ++GFGLDL++C TG +L++VSPKSG A+CR G PYA
Sbjct: 133 LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA 192
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
++ML LP FL + D +SL +AF+LT YFLN++ + + R+ F+ L+ +
Sbjct: 193 DRMLALPDFLSGGSRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL 252
>gi|227821417|ref|YP_002825387.1| DNA repair protein RecO [Sinorhizobium fredii NGR234]
gi|227340416|gb|ACP24634.1| DNA repair protein RecO [Sinorhizobium fredii NGR234]
Length = 276
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 162/240 (67%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D AIILG+R +GE ++I EVMT +GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 29 MQWSDQAIILGIRRHGESSVIAEVMTSAHGRHLGLVRSGRSRTMQPVLQPGNSVEVTWRA 88
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E LE A+L+ ++ +YG+Q++ L R LPER+P LY+ L + ++
Sbjct: 89 RLDEHLGEFRLEPLELRAARLMEAATSVYGIQALGALLRLLPERDPHPHLYEALAVIVDH 148
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P+ G++FV+ EL +L ++GFGLDL++C TG +L++VSPK+G AV R+ G PYA
Sbjct: 149 LQDPADAGELFVRFELAVLNDLGFGLDLSECAATGHRAELIYVSPKTGRAVSRAAGAPYA 208
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
E+ML LP FL D DSL +AF+LT YFLN++ + + R+ F+ L+ +
Sbjct: 209 ERMLALPDFLSGTRSAADHDSLAAAFRLTAYFLNRHVYEPRGVDVSSARDGFVHATLKAL 268
>gi|195970186|ref|NP_385194.3| DNA repair protein RecO [Sinorhizobium meliloti 1021]
gi|307300911|ref|ZP_07580680.1| DNA repair protein RecO [Sinorhizobium meliloti BL225C]
gi|15074020|emb|CAC45667.1| Recombinational DNA repair protein (RecF pathway) [Sinorhizobium
meliloti 1021]
gi|306903866|gb|EFN34452.1| DNA repair protein RecO [Sinorhizobium meliloti BL225C]
Length = 259
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 164/240 (68%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+AIILG+R +GE ++I EVMT +GRHLG VR+G+S MQP+LQ GN V V+WR+
Sbjct: 13 MQWSDEAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRTMQPVLQPGNSVEVSWRA 72
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E L+ A L+ ++ +YG+Q++ L R LPER+P LY+ L + ++
Sbjct: 73 RLDEHLGEFRVEPLQLRAASLIETATSVYGIQALGALLRLLPERDPHPHLYEALAVIVDH 132
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P+ G++FV+ EL +L ++GFGLDL++C TG +L++VSPKSG A+CR G PYA
Sbjct: 133 LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA 192
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
++ML LP FL + D +SL +AF+LT YFLN++ + + R+ F+ L+ +
Sbjct: 193 DRMLALPDFLSGGSRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL 252
>gi|20139557|sp|Q92KH5|RECO_RHIME RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 247
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 164/240 (68%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+AIILG+R +GE ++I EVMT +GRHLG VR+G+S MQP+LQ GN V V+WR+
Sbjct: 1 MQWSDEAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRTMQPVLQPGNSVEVSWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E L+ A L+ ++ +YG+Q++ L R LPER+P LY+ L + ++
Sbjct: 61 RLDEHLGEFRVEPLQLRAASLIETATSVYGIQALGALLRLLPERDPHPHLYEALAVIVDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P+ G++FV+ EL +L ++GFGLDL++C TG +L++VSPKSG A+CR G PYA
Sbjct: 121 LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
++ML LP FL + D +SL +AF+LT YFLN++ + + R+ F+ L+ +
Sbjct: 181 DRMLALPDFLSGGSRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL 240
>gi|188580258|ref|YP_001923703.1| DNA repair protein RecO [Methylobacterium populi BJ001]
gi|238692877|sp|B1ZA19|RECO_METPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|179343756|gb|ACB79168.1| DNA repair protein RecO [Methylobacterium populi BJ001]
Length = 246
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ +++G+R +GE ++LE+MT ++GRHLG V G+S RMQP+LQ GN +R WR+
Sbjct: 1 MQWIDEGLVIGLRKHGETGVVLELMTLEHGRHLGLVHGGRSRRMQPMLQPGNTLRATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG + E L + ++L+ S L LYG+ + L R LPER+P LY+ + +
Sbjct: 61 RLDGALGSYAVEPLTLNASRLMDSGLALYGIGHLSTLLRLLPERDPHPALYEAAQVLIAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + + V+ EL LL +GFGLDL+ C TG L++VSPKSG AV S G P+
Sbjct: 121 LDEPEIAPALMVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPFR 180
Query: 181 EKMLVLPSFLWKEEQT------IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL +Q DA ++ F LT YFL+++ + R F+
Sbjct: 181 DRLLALPPFLRDRDQPGSGWRTPDAHDVREGFTLTGYFLDQHVWRPRAQDTPEERARFV 239
>gi|126461085|ref|YP_001042199.1| DNA repair protein RecO [Rhodobacter sphaeroides ATCC 17029]
gi|166221908|sp|A3PGG1|RECO_RHOS1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|126102749|gb|ABN75427.1| DNA repair protein RecO [Rhodobacter sphaeroides ATCC 17029]
Length = 239
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +L VR +GE + I+EV T +GRH G VR G S ++ PILQ G + + W++
Sbjct: 2 MEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQPGAQLDLTWKA 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L S A L L LPEREP L+ L+
Sbjct: 62 RLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHVTLPEREPHSTLWQESMALLDA 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P +++ E+ LL+ GFGLDLT+C VTG +DL +VSPK+G AV R +A
Sbjct: 122 LDRP-GWPPAYLRWEMRLLEETGFGLDLTRCAVTGSREDLAFVSPKTGRAVSRGAAGGWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
+++ LP L + A+ ++ +T +FL + L N R + L
Sbjct: 181 DRLFPLPLALLGQG-PASAEEVRQGLAITGHFLGRE-LAPLLNGRPLPEARARLMELLAR 238
Query: 239 L 239
Sbjct: 239 A 239
>gi|16125811|ref|NP_420375.1| DNA repair protein RecO [Caulobacter crescentus CB15]
gi|20139676|sp|Q9A802|RECO_CAUCR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|13422953|gb|AAK23543.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 250
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 1/239 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W+D+A +L RS+GE I+E++T G+ V S RM+P LQ G V V +R++
Sbjct: 9 EWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRAK 68
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFLNC 120
+ LG E + + L L L GL + + + L +
Sbjct: 69 VEGQLGSATLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIRV 128
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+IP + ++V+ E LL+ +GFGLDL+KC TG DL++VSP++G AV R G PY
Sbjct: 129 LEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAATGAFDDLVYVSPRTGRAVSREAGKPYH 188
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP F+ + + +K+ +T +FL ++ R L +L E
Sbjct: 189 DKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWLLDRLAEA 247
>gi|259418038|ref|ZP_05741957.1| DNA repair protein RecO [Silicibacter sp. TrichCH4B]
gi|259346944|gb|EEW58758.1| DNA repair protein RecO [Silicibacter sp. TrichCH4B]
Length = 241
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 87/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE + ++EV T+ +GRH G VR G S +M P LQ G + + W +
Sbjct: 1 MDWRDQGILLTVRRHGESSALIEVFTQAHGRHAGLVRGGASRKMAPHLQPGAQLDLTWSA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL +LG ++ E L S A LS L L GL ++ L F LP+RE ELY L+
Sbjct: 61 RLEDHLGTYKAEPLRSRAASALSGRLALSGLNAVCALLAFALPDREAYSELYHRSEALLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +++ EL LL+++G+GLDL+ C VTG T+ L++VSPK+G AV + +
Sbjct: 121 LLDNEDLWPLGYLRWELSLLEDLGYGLDLSCCAVTGATEGLMYVSPKTGRAVSEAGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN-KYALQHNIIHCHLLRENFLGKLLE 238
A+++L LP + E D + +A + T +F K A R FL L
Sbjct: 181 ADRLLPLPPVMRGEGDGEDI-EILTALRTTGFFFESKLAPALGNRPVPEARGRFLDALSR 239
Query: 239 LI 240
+
Sbjct: 240 RL 241
>gi|323137541|ref|ZP_08072618.1| DNA repair protein RecO [Methylocystis sp. ATCC 49242]
gi|322397167|gb|EFX99691.1| DNA repair protein RecO [Methylocystis sp. ATCC 49242]
Length = 241
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 138/239 (57%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +++G R +GE ++ILE+MTRQ+GRHLG VR G+S M+P+LQ GNLV +WR+
Sbjct: 1 MEWRDEGLVIGARKHGETSVILELMTRQHGRHLGVVRGGRSQAMRPVLQPGNLVVASWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +LG F E L S A+ L L+G+ ++ R LPER+P EL++M +
Sbjct: 61 RLEVHLGAFAIEPLASRAARYLDRGAALHGVAALAAWLRLLPERDPYEELFEMADAIACR 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + EL LL +GFGLDL C +TG DL +VSPKSG AV R G P+
Sbjct: 121 LDAADFAAPLMARFELALLGALGFGLDLGACALTGARDDLAYVSPKSGRAVSREAGAPWR 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
E++L P+FL + D + +AF+LT YFL + L + R ++ L
Sbjct: 181 ERLLPYPAFLREASDVAAVDDVAAAFRLTGYFLTRDVLAPRGVAMPASRALYIDALARA 239
>gi|255263314|ref|ZP_05342656.1| DNA repair protein RecO [Thalassiobium sp. R2A62]
gi|255105649|gb|EET48323.1| DNA repair protein RecO [Thalassiobium sp. R2A62]
Length = 242
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 3/239 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W+D+ +L VR +GE I+E+ T ++GRH G VR G S ++ PILQ G + V W++R
Sbjct: 3 QWRDEGALLSVRRHGESAAIVEIFTAEHGRHAGIVRGGTSRKIAPILQPGAQLDVVWKAR 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFLNC 120
L ++LG F E + S A ++S L L GL ++ L F LY + ++
Sbjct: 63 LEEHLGSFSVEPVRSRAAAVMSDRLALAGLNAVCALLAFAMPEREAHPSLYRQSTVLMDL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+++ EL LL+ +GFGLDL C VTG + L +VSPKSG AV +A
Sbjct: 123 LGNTDAWPLAYLRWELALLEELGFGLDLGSCAVTGSVEGLCYVSPKSGRAVSAEGAGEWA 182
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLLE 238
+++L LP L DA + + T YFL + + R + L+
Sbjct: 183 DRLLPLPDVLLGVGSAPDA-EILQGLETTGYFLEHWLARALGDRPVPDARGRMVDALVR 240
>gi|221641177|ref|YP_002527439.1| DNA repair protein RecO [Rhodobacter sphaeroides KD131]
gi|332560104|ref|ZP_08414426.1| DNA repair protein RecO [Rhodobacter sphaeroides WS8N]
gi|254764657|sp|B9KSB0|RECO_RHOSK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|221161958|gb|ACM02938.1| DNA repair protein recO [Rhodobacter sphaeroides KD131]
gi|332277816|gb|EGJ23131.1| DNA repair protein RecO [Rhodobacter sphaeroides WS8N]
Length = 239
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +L VR +GE + I+EV T +GRH G VR G S ++ PILQ G + + W++
Sbjct: 2 MEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQPGAQLDLTWKA 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L S A L L LPEREP L+ L+
Sbjct: 62 RLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHVTLPEREPHSTLWQESMALLDA 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P +++ E+ LL+ GFGLDLT+C VTG +DL +VSPK+G AV R +A
Sbjct: 122 LDRP-GWPPAYLRWEMRLLEETGFGLDLTRCAVTGSREDLAFVSPKTGRAVSRGAAGGWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
+++ LP L + A+ ++ +T +FL + L N R + L
Sbjct: 181 DRLFPLPLALLGQG-PASAEEVRQGLAITGHFLGRE-LAPLLNGRPMPEARARLMELLAR 238
Query: 239 L 239
Sbjct: 239 A 239
>gi|84515166|ref|ZP_01002529.1| DNA repair protein RecO [Loktanella vestfoldensis SKA53]
gi|84511325|gb|EAQ07779.1| DNA repair protein RecO [Loktanella vestfoldensis SKA53]
Length = 243
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 4/242 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+DDA IL +R +GE + I+EV + +GRH G VR G S ++ P++Q G V V W
Sbjct: 1 MISWRDDAAILAMRPFGESSAIIEVFSANHGRHAGVVRGGASRKIAPLIQPGAQVNVAWA 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL +LG F E + S A ++ L L GL ++ L LPERE LY L
Sbjct: 61 ARLDDHLGSFTVEPVRSRNAAAMADRLSLAGLNAVCALLLMVLPERESHPLLYQRSIALL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ +V +++ E LL+ +GFGLDL+ C +GV +DL +VSPKSG AV R
Sbjct: 121 DLLDQRAVWPLAYLRWEQALLEEMGFGLDLSACAASGVNEDLAFVSPKSGRAVSRDAAGV 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQ-HNIIHCHLLRENFLGKLL 237
+A+++L LP L + + A T +F+ ++ + R + ++
Sbjct: 181 WADRLLPLPPVLAGKGDA-SGVEIAKALGTTGFFIENRLIKGLGDRNVPAARARLIDAIM 239
Query: 238 EL 239
Sbjct: 240 RA 241
>gi|150395917|ref|YP_001326384.1| DNA repair protein RecO [Sinorhizobium medicae WSM419]
gi|166221910|sp|A6U7B9|RECO_SINMW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|150027432|gb|ABR59549.1| DNA repair protein RecO [Sinorhizobium medicae WSM419]
Length = 249
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 111/240 (46%), Positives = 164/240 (68%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D AIILG+R +GE ++I EVMT +GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E L+ A+L+ ++ +YG+Q++ L R LPER+P LY+ L + ++
Sbjct: 61 RLDEHLGEFRVEPLQLRAARLIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P+ G++FV+ EL +L ++GFGLDL++C TG +L++VSPKSG A+CR G PYA
Sbjct: 121 LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
E+ML LP FL + + D +SL +AF+LT YFLN++ + + R+ F+ L+ +
Sbjct: 181 ERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL 240
>gi|319408285|emb|CBI81938.1| DNA repair protein RecO [Bartonella schoenbuchensis R1]
Length = 248
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 99/239 (41%), Positives = 149/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R +GE ++ILE+MTRQ+GR++G V+ G+S M +LQ GN V W +
Sbjct: 1 MRWKEQAIILGTRQHGETSVILEIMTRQHGRYMGMVKGGRSRSMAALLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F+ E L+ H ++L+ LY LQ + R LPER+P LYDML+IF+
Sbjct: 61 RLDEHLGLFKLEALDLHASRLMLIPEALYTLQLMASHLRLLPERDPHPILYDMLHIFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
VI ++ ++ E+ LLK +GFGLDL+ CVVTG ++L +VSPKSG AV G +
Sbjct: 121 FDEWFVIAELLIRFEMRLLKELGFGLDLSCCVVTGCRENLHYVSPKSGRAVSEEAGYLWR 180
Query: 181 EKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L LP FL + + ID + +++ F LT++FL ++ + I +R N +
Sbjct: 181 DKLLPLPQFLIQRASRPIDFNDMRNGFALTNFFLTRHVWEPRRIQQPSVRVNLINLFER 239
>gi|119370511|sp|Q3J5V8|RECO_RHOS4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 238
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +L VR +GE + I+EV T +GRH G VR G S ++ PILQ G + + W++
Sbjct: 1 MEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQPGAQLDLTWKA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L S A L L LPEREP L+ + L+
Sbjct: 61 RLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHVTLPEREPHSTLWQESMVLLDA 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P +++ E+ LL+ GFGLDLT+C VTG +DL +VSPK+G AV +A
Sbjct: 121 LDRP-GWPPAYLRWEMRLLEETGFGLDLTRCAVTGSREDLAFVSPKTGRAVSSGAAGGWA 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
+++ LP L + A+ ++ +T +FL + L N R + L
Sbjct: 180 DRLFPLPLALLGQG-PASAEEVRQGLAITGHFLGRE-LAPLLNGRPLPEARARLMELLAR 237
Query: 239 L 239
Sbjct: 238 A 238
>gi|77462223|ref|YP_351727.1| DNA repair protein RecO [Rhodobacter sphaeroides 2.4.1]
gi|77386641|gb|ABA77826.1| putative RecO protein [Rhodobacter sphaeroides 2.4.1]
Length = 239
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +L VR +GE + I+EV T +GRH G VR G S ++ PILQ G + + W++
Sbjct: 2 MEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQPGAQLDLTWKA 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G F E L S A L L LPEREP L+ + L+
Sbjct: 62 RLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHVTLPEREPHSTLWQESMVLLDA 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P +++ E+ LL+ GFGLDLT+C VTG +DL +VSPK+G AV +A
Sbjct: 122 LDRP-GWPPAYLRWEMRLLEETGFGLDLTRCAVTGSREDLAFVSPKTGRAVSSGAAGGWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
+++ LP L + A+ ++ +T +FL + L N R + L
Sbjct: 181 DRLFPLPLALLGQG-PASAEEVRQGLAITGHFLGRE-LAPLLNGRPLPEARARLMELLAR 238
Query: 239 L 239
Sbjct: 239 A 239
>gi|84684348|ref|ZP_01012249.1| DNA repair protein RecO [Maritimibacter alkaliphilus HTCC2654]
gi|84667327|gb|EAQ13796.1| DNA repair protein RecO [Rhodobacterales bacterium HTCC2654]
Length = 246
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 86/241 (35%), Positives = 125/241 (51%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D +L VR +GE ++I+EV T ++GRH G VR G S ++ PILQ G+ + + WR+
Sbjct: 4 MEWRDQGTLLSVRKHGETSVIIEVFTAEHGRHAGVVRGGVSRKIAPILQPGSQLDLVWRA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL +++G F E ++S A ++ L GL +I L F LPERE LY L+
Sbjct: 64 RLEEHIGAFTVEPVKSRAAAIMGDRNALAGLNAITALLSFALPEREAHPRLYTRSIAMLD 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++Q EL LL+ +G+GLDLT C VTG +DL +VSPKSG AV +
Sbjct: 124 LLAETPAWPVGYLQWELALLEELGYGLDLTACAVTGGAEDLAYVSPKSGRAVSAEGAGEW 183
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
+++L LP T D + + T YFL + L H R + +L
Sbjct: 184 VDRLLPLPEE-LLGVVTQDLAGIPDGLRTTGYFLT-HGLAHALGDRPLPEARARLVDRLS 241
Query: 238 E 238
Sbjct: 242 R 242
>gi|163850484|ref|YP_001638527.1| DNA repair protein RecO [Methylobacterium extorquens PA1]
gi|240137548|ref|YP_002962019.1| DNA repair protein RecO [Methylobacterium extorquens AM1]
gi|238687373|sp|A9W1K0|RECO_METEP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|163662089|gb|ABY29456.1| DNA repair protein RecO [Methylobacterium extorquens PA1]
gi|240007516|gb|ACS38742.1| DNA repair protein RecO [Methylobacterium extorquens AM1]
Length = 246
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD +++G+R +GE ++LE+MT ++GRHLG V G+S RMQP+LQ GN +R WR+
Sbjct: 1 MQWIDDGLVIGLRKHGETGVVLELMTPEHGRHLGLVHGGRSRRMQPMLQPGNTLRATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG + E L + ++L+ S L LYG+ + L R LPER+P LY+ I +
Sbjct: 61 RLDGALGAYAVEPLTLNASRLMDSGLALYGVAHLSALLRLLPERDPHPALYEAAQILIAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + + V+ EL LL +GFGLDL+ C TG L++VSPKSG AV S G P+
Sbjct: 121 LDDPEIAPALMVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPFR 180
Query: 181 EKMLVLPSFLWKEEQT------IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL +Q D ++ F LT YFL+++ + R F+
Sbjct: 181 DRLLPLPPFLRDRDQPGSGWRTPDTHDVREGFTLTGYFLDQHVWRPRAQDTPEERARFV 239
>gi|218529181|ref|YP_002419997.1| DNA repair protein RecO [Methylobacterium chloromethanicum CM4]
gi|254764643|sp|B7KPI6|RECO_METC4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218521484|gb|ACK82069.1| DNA repair protein RecO [Methylobacterium chloromethanicum CM4]
Length = 246
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD +++G+R +GE ++LE+MT ++GRHLG V G+S RMQP+LQ GN +R WR+
Sbjct: 1 MQWIDDGLVIGLRKHGETGVVLELMTPEHGRHLGLVHGGRSRRMQPMLQPGNTLRATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG + E L + ++L+ S L LYG+ + L R LPER+P LY+ I +
Sbjct: 61 RLDGALGAYAVEPLTLNASRLMDSGLALYGVAHLSALLRLLPERDPHPALYEAAQILIAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + + V+ EL LL +GFGLDL+ C TG L++VSPKSG AV S G P+
Sbjct: 121 LDDPEIAPALMVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPFR 180
Query: 181 EKMLVLPSFLWKEEQT------IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL +Q D ++ F LT YFL+++ + R F+
Sbjct: 181 DRLLPLPPFLRDRDQPGSGWRTPDTQDVREGFTLTGYFLDQHVWRPRAQDTPEERARFV 239
>gi|83858198|ref|ZP_00951720.1| DNA repair protein RecO [Oceanicaulis alexandrii HTCC2633]
gi|83853021|gb|EAP90873.1| DNA repair protein RecO [Oceanicaulis alexandrii HTCC2633]
Length = 242
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 2/238 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W I+ VR +GE + ++EV+T ++GRH G VR G+S M+PILQ GN +R WR+
Sbjct: 1 MEWTASGRIVAVRPHGETSAVIEVLTAEHGRHAGLVRGGRSKAMRPILQPGNRIRAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL +LG F E + L+ L L GL + + LPERE + D + ++
Sbjct: 61 RLESHLGGFAVEAEDLSAGVLMEDPLALSGLNAACAMASICLPEREEHPAVADAFEVLIS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ P + ++V+ E LL ++G+GLDL +C TGV L++VSPKSG AV G PY
Sbjct: 121 ALEDPDLWPALYVRWEAGLLADLGYGLDLRRCAATGVETGLVYVSPKSGRAVSAEAGEPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
++ML LP F+ K + + + +LT +F+ + L R + +L
Sbjct: 181 RDRMLALPGFM-KGGGQVSEGDVGAGLKLTAHFIERRVLWPADRMLPDARTRMIERLE 237
>gi|89070889|ref|ZP_01158124.1| DNA repair protein RecO, putative [Oceanicola granulosus HTCC2516]
gi|89043528|gb|EAR49739.1| DNA repair protein RecO, putative [Oceanicola granulosus HTCC2516]
Length = 239
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/241 (35%), Positives = 121/241 (50%), Gaps = 5/241 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D ++L R +GE +I EV T GRH G VR G+S ++ P+LQ G V V W +
Sbjct: 1 MQWRDGGVLLARRGHGESGVIAEVFTETRGRHAGLVRGGRSKQLAPVLQPGEQVEVTWTA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL ++LG +R E L S A +++ L L GL +I L F LPEREP LY L+
Sbjct: 61 RLEEHLGAYRVEPLRSRAALVMNDRLALAGLNAICGLLAFALPEREPHPALYARSVTLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ EL LL+ +GFGLDL+ C VTG L +VSP++G AV + +
Sbjct: 121 LLGRTDAWPLAYLHWELALLEELGFGLDLSSCAVTGAEDGLAFVSPRTGRAVSAAGAGEW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A ++L LP L + DA + + T +FL + L R + L
Sbjct: 181 AGRLLPLPPALRGQGPGPDA-EILEGLRTTGHFLATW-LAPALGDRPLPEARARLVALLS 238
Query: 238 E 238
Sbjct: 239 R 239
>gi|254560020|ref|YP_003067115.1| DNA repair protein RecO [Methylobacterium extorquens DM4]
gi|254267298|emb|CAX23130.1| DNA repair protein RecO [Methylobacterium extorquens DM4]
Length = 246
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD +++G+R +GE ++LE+MT ++GRHLG V G+S RMQP+LQ GN +R WR+
Sbjct: 1 MQWIDDGLVIGLRKHGETGVVLELMTPEHGRHLGLVHGGRSRRMQPMLQPGNTLRATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG + E L + ++L+ S L LYG+ + L R LPER+P LY+ I +
Sbjct: 61 RLDGALGAYAVEPLTLNASRLMDSGLALYGVAHLSALLRLLPERDPHPALYEAAQILIAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + + V+ EL LL +GFGLDL+ C TG L++VSPKSG AV S G P+
Sbjct: 121 LDDPEIAPALMVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPFR 180
Query: 181 EKMLVLPSFLWKEEQ------TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL +Q T D ++ F LT YFL+++ + R F+
Sbjct: 181 DRLLPLPPFLRDRDQSGSGWRTPDTHDVREGFTLTGYFLDQHVWRPRAQDTPEERARFV 239
>gi|163793044|ref|ZP_02187020.1| GTP-binding protein Era [alpha proteobacterium BAL199]
gi|159181690|gb|EDP66202.1| GTP-binding protein Era [alpha proteobacterium BAL199]
Length = 253
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 5/240 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
W D+ I+L +++GE + I+ ++TR +GRH G VR S R + + Q GN V WR+RL
Sbjct: 4 WTDEGIVLAAKAHGEGSAIVVLLTRDHGRHAGLVRGAFSGRARGVYQPGNRVTAEWRARL 63
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLNCH 121
A +LG + E+ H A +L L L GL + + LPEREP +++D L L+
Sbjct: 64 ADHLGNYTCELGHGHAAAVLDDPLKLAGLSAACAIAEASLPEREPHPQVHDGLVALLDAM 123
Query: 122 KIP---SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P ++V+ E+ +L ++G+GLDL C TG DL +VSP++G AV + G P
Sbjct: 124 AEPELGDAWIAVYVRWEIGVLADLGYGLDLESCAATGANDDLAYVSPRTGRAVSLAAGEP 183
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
Y +++L LP FL D D L L+ +F+ ++ + R F+ +
Sbjct: 184 YRDRLLSLPRFLIGRGGG-DQDDLFRGLALSGFFMERHVFATHGRQPPPARTRFVERFAR 242
>gi|84500557|ref|ZP_00998806.1| DNA repair protein RecO [Oceanicola batsensis HTCC2597]
gi|84391510|gb|EAQ03842.1| DNA repair protein RecO [Oceanicola batsensis HTCC2597]
Length = 241
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 132/239 (55%), Gaps = 5/239 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+L VR +GE I +V T GRH G VR S ++ P+LQ G + ++W++
Sbjct: 1 MEWRDQGILLAVRRHGESAAIADVFTPGRGRHAGVVRGATSRKLAPVLQPGAQLDISWKA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL ++LG F E + S A++L L L GL ++ L F LPERE LY L+
Sbjct: 61 RLEEHLGHFTVEPVRSRAAQILGDRLALAGLNAVTALLCFALPEREAHEALYRRTETLLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++ EL LL+++G+GLDLT+C VTG + L ++SP++G AV + +
Sbjct: 121 LLGQMDLWPLAYLHWELALLEDLGYGLDLTECAVTGAREGLDYISPRTGRAVTAAGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKL 236
A+++L LP L ++ + D + + S F++T +FL ++ L R+ F+ +
Sbjct: 181 ADRLLPLPPCLLRQGEAPD-EEILSGFRVTGHFLAEH-LAPELGQKPIPEARQRFVDRF 237
>gi|182679932|ref|YP_001834078.1| DNA repair protein RecO [Beijerinckia indica subsp. indica ATCC
9039]
gi|238691211|sp|B2IBG3|RECO_BEII9 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|182635815|gb|ACB96589.1| DNA repair protein RecO [Beijerinckia indica subsp. indica ATCC
9039]
Length = 250
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 92/235 (39%), Positives = 126/235 (53%), Gaps = 2/235 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ +I+G+R YGE ILEV T +GRH G VR G R++ +LQ GN WR+
Sbjct: 1 MEWHDEGLIIGLRRYGETGAILEVFTPAHGRHFGLVRGGFGRRLRALLQPGNQADFTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL Q LG E + +L +S L L G+ I L R LPER+P ELY ++ + L
Sbjct: 61 RLDQQLGLLAVEPTKLMTTRLFASGLALQGMNLIAALLRLLPERDPHPELYAVVRVLLEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+V + + EL +L GFGLDL+ C TG TQ+L++VSPKSG AV G PY
Sbjct: 121 LDEPAVAPILLARFELAMLTETGFGLDLSACAATGATQELIYVSPKSGRAVSARAGAPYH 180
Query: 181 EKMLVLPSFLWKEE--QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+K+L LP F + + +++ F LT +FL + R FL
Sbjct: 181 DKLLGLPPFFLDGSLLKNPTLEEVEAGFALTGHFLMRDLFGPRGQTLPDARHAFL 235
>gi|114570118|ref|YP_756798.1| DNA repair protein RecO [Maricaulis maris MCS10]
gi|114340580|gb|ABI65860.1| DNA repair protein RecO [Maricaulis maris MCS10]
Length = 234
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 2/231 (0%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEF 69
L VR +GE + I+EV+T + GRH G VR +S M+PILQ GN + VNWR+RL+++LG F
Sbjct: 2 LAVRPHGETSAIVEVLTAEQGRHAGLVRGARSRSMRPILQPGNQITVNWRARLSEHLGMF 61
Query: 70 RFEVLESHCAKLLSSSLFLYGLQSIV-PLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG 128
+ E + ++ L GL S LPERE ++ + L P +
Sbjct: 62 QIEADDLTAGMVMEDRTALAGLNSACAIAVMGLPEREAHPRVHQGFQLLLGAFDNPDIWP 121
Query: 129 KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
++V+ E LL ++G+GLD++ C VTGVT+DL +SP++G AVCR PYA K+L LP
Sbjct: 122 ALYVRWEAGLLSDLGYGLDMSACAVTGVTEDLTHISPRTGRAVCREEAAPYAPKLLELPP 181
Query: 189 FLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
F+ I+A + LT YFL + L R + +L ++
Sbjct: 182 FMAGSG-KIEAGDIARGLALTGYFLERRVLWPIDKQLPEARGRLMAELEQV 231
>gi|15888381|ref|NP_354062.1| DNA repair protein RecO [Agrobacterium tumefaciens str. C58]
gi|42559508|sp|Q8UGJ8|RECO_AGRT5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|15156061|gb|AAK86847.1| DNA repair protein RecO [Agrobacterium tumefaciens str. C58]
Length = 254
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 167/241 (69%), Gaps = 1/241 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD+AIILGV+ +GE ++I EVMT GRHLG VR+G+S MQP+LQAGN V V WR+
Sbjct: 1 MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +LGEFR E L+ +L+ ++ +YG+Q++ L R LPER+P LY L++ L+
Sbjct: 61 RLHDHLGEFRIEPLQLRAGQLMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P G++FV+ EL +L ++GFGLDL++C TG+ DL++VSPK+G AVCR+ G PYA
Sbjct: 121 LHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDLIYVSPKTGRAVCRTAGAPYA 180
Query: 181 EKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+ML LP+FL + + + D +SL +AF+LTD+FL+++ ++ + R+ F+ L+
Sbjct: 181 ARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA 240
Query: 240 I 240
+
Sbjct: 241 L 241
>gi|159042759|ref|YP_001531553.1| DNA repair protein RecO [Dinoroseobacter shibae DFL 12]
gi|254790521|sp|A8LLE2|RECO_DINSH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157910519|gb|ABV91952.1| DNA repair protein RecO [Dinoroseobacter shibae DFL 12]
Length = 241
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 7/243 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+++ ++L VR +GE ++I+E TR +GRHLG VR G S ++ P+LQ G + + W+
Sbjct: 1 MIEWREEGVLLSVRPHGETSVIVEAFTRAHGRHLGVVRGGVSRKLAPVLQPGAQLDLRWK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL ++G F E + A +L L L + S + L RF L ER YD L
Sbjct: 61 ARLEDHMGAFTVEPVRGRAAAVLGDRLALSAMSSALALARFSLAERAAYPGFYDQTVALL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + ++ E+ LL +GFGLDL+ C V GV +DL +VSP++G AV R
Sbjct: 121 DALAEGTGWLPAYLDWEMALLDQMGFGLDLSGCAVRGVNEDLAFVSPRTGRAVSRQAAGA 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKL 236
+ +++L LP + + T +FL + L R F+ L
Sbjct: 181 WVDRLLPLPEVML--GGPAHLHGVLEGLTTTGHFLE-HKLAPALGNRPPPEARARFIDVL 237
Query: 237 LEL 239
Sbjct: 238 SRA 240
>gi|126733738|ref|ZP_01749485.1| DNA repair protein RecO [Roseobacter sp. CCS2]
gi|126716604|gb|EBA13468.1| DNA repair protein RecO [Roseobacter sp. CCS2]
Length = 244
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 4/242 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+ +A +L R +GE +I+EV + +GRH G VR G S ++ P+LQ G + V W+
Sbjct: 1 MIEWRSEAALLSSRPFGENGVIIEVFSALHGRHAGVVRGGASRKLAPVLQPGAQLSVAWK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL +LG F E + S A + L L GL ++ L LPERE LY+ L
Sbjct: 61 ARLESHLGSFAVEPIRSRAAAAMGDRLALAGLNAVCSLLAMVLPEREAHEPLYERTIALL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ V +++ E LL+ +GF +DL+ C V GV +DL++VSPKSG AV R
Sbjct: 121 DLLGQQDVWPLAYLRWEQALLEEMGFAMDLSACAVRGVNEDLIYVSPKSGRAVSREAAGE 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQ-HNIIHCHLLRENFLGKLL 237
+A++ML LP L + + A T YF+ ++ R L ++
Sbjct: 181 WADRMLPLPEVLTGKGDA-SNAQIAKALGTTGYFIEHRLIKGLGDRPMPAARTRLLDAIM 239
Query: 238 EL 239
Sbjct: 240 RA 241
>gi|154247809|ref|YP_001418767.1| DNA repair protein RecO [Xanthobacter autotrophicus Py2]
gi|238686793|sp|A7IM67|RECO_XANP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|154161894|gb|ABS69110.1| DNA repair protein RecO [Xanthobacter autotrophicus Py2]
Length = 242
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 1/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ I+LGVR +GE N I+E++TR GRHLG VR G S R P+LQ GN V WR+
Sbjct: 1 MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E L+ + +G + + LPER+P L+ + L+
Sbjct: 61 RLDEHMGNYALEPAVVRTEVLMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDA 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ G++ + EL LL +GFGL+L C TG +DL++VSPKSG AVC G PYA
Sbjct: 121 FENRESAGRLLARFELALLAELGFGLELETCAATGRREDLVYVSPKSGRAVCGEAGAPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
+++ LP FL A ++ A +LT YFL L+ + R F+ I
Sbjct: 181 DRLFALPRFLVDGTAPP-AGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSI 239
>gi|328543511|ref|YP_004303620.1| DNA repair protein recO [polymorphum gilvum SL003B-26A1]
gi|326413255|gb|ADZ70318.1| DNA repair protein recO [Polymorphum gilvum SL003B-26A1]
Length = 253
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 108/242 (44%), Positives = 142/242 (58%), Gaps = 4/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W +D IILG RS+GE ++LE+MTR+ GRHLG VR G+S R QP+LQ GNLVR WR+
Sbjct: 1 MEWSEDGIILGTRSHGESGVVLELMTRRRGRHLGLVRGGRSRRQQPVLQPGNLVRATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R+A LG F E L+ L+ S+L L+ LQ + L R LPER+ LYD L I L+
Sbjct: 61 RIADQLGAFTVEPLQLRAGALMDSALALHALQHLAGLLRLLPERDAHERLYDALTIVLDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ G + V+ EL LL +GFGLDLT+C TG DL +VSPKSG AV R G PY
Sbjct: 121 LGEAMIAGPLIVRFELELLNELGFGLDLTRCAATGQLWDLAYVSPKSGRAVSRDAGAPYR 180
Query: 181 EKMLVLPSFLWKE----EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+++L LPSFL + I + +LT +FL ++ L+ L RE + L
Sbjct: 181 DQLLPLPSFLVEGERQPGSEITFADISQGLRLTAFFLARHVLEPQGHAPSLSREELVKAL 240
Query: 237 LE 238
Sbjct: 241 ER 242
>gi|197105330|ref|YP_002130707.1| recombinational DNA repair protein (RecF pathway) [Phenylobacterium
zucineum HLK1]
gi|254764651|sp|B4RCU1|RECO_PHEZH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|196478750|gb|ACG78278.1| recombinational DNA repair protein (RecF pathway) [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 1/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++DDA +L R++GE I+E++T +GR+ V G S +++P LQ G V +R+
Sbjct: 1 MEFEDDAFVLAARAHGETGAIVELLTSAHGRYAAHVAGGASRKVRPFLQPGARVIARYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLN 119
R++ LG E + A L L L GL + + P +
Sbjct: 61 RVSDQLGSAAIEPVGEGPAALFDDPLALSGLSAAAAVAAGALPEREPHPGAFLAFEALTG 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
P V +FV+ E LL+++GFGLDL+KC TG+T DL+WVSP++G AV R G PY
Sbjct: 121 ALTHPDVWPAVFVRFEAGLLQDLGFGLDLSKCAATGITDDLVWVSPRTGRAVSRQAGEPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+++L LP FL + + A + + LT +FL + R L +L E
Sbjct: 181 KDRLLALPPFLLSAQGGLRAGDVAAGLALTGHFLEAFIFGPLNRPLPPARLWLLDRLSEA 240
>gi|217979938|ref|YP_002364085.1| DNA repair protein RecO [Methylocella silvestris BL2]
gi|254764645|sp|B8EMP4|RECO_METSB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|217505314|gb|ACK52723.1| DNA repair protein RecO [Methylocella silvestris BL2]
Length = 247
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 3/232 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +I+GVR YGE ++ILE MTR +GRHLG VR G+S RM+ +LQ GN + WR+
Sbjct: 1 MEWRDEGLIIGVRQYGEASVILEAMTRGHGRHLGLVRGGRSQRMRAVLQPGNSAELVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG + E + A L++S+ L+ + I L R + ER+P +LY+ +
Sbjct: 61 RLDEQLGTWAIEPTQLRAATLMASAEALHAVGLICALLRLIAERDPHPDLYETAVLIAGH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V++E+ +L+ GFGLDL++C TG +DL +VSPKSG AV + G PY
Sbjct: 121 IGDERLAP-LLVRLEIEILRETGFGLDLSRCAATGAREDLAYVSPKSGRAVSLAAGAPYR 179
Query: 181 EKMLVLPSFLWKE--EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRE 230
E++L LP FL E + F LT +FL + R
Sbjct: 180 ERLLPLPPFLRDEAPGGEPTPQDVLDGFGLTGFFLKRDVFTPRGQGMPEARR 231
>gi|170748446|ref|YP_001754706.1| DNA repair protein RecO [Methylobacterium radiotolerans JCM 2831]
gi|170654968|gb|ACB24023.1| DNA repair protein RecO [Methylobacterium radiotolerans JCM 2831]
Length = 239
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 103/233 (44%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DDA++LG+R +GE +ILE MT +GRHLG V G+S RMQP+LQAGN VR+ WR+
Sbjct: 1 MQWTDDALVLGLRRHGETGVILEAMTEAHGRHLGLVHGGRSRRMQPVLQAGNRVRLTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG + E L+S ++L+ SSL LYG+ + L R LPER+P LY+ I +
Sbjct: 61 RLDEGLGSYAVEPLDSQVSRLIGSSLALYGMNHMAALLRLLPERDPHPALYEAAGILVEH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+V + V+ EL +L +GFGLDLT C TG L +VSPKSG AV S G PY
Sbjct: 121 LDDPAVAPPLMVRFELAILSELGFGLDLTACAATGGNDALAYVSPKSGRAVSASAGEPYR 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP+FL D + F LT YFL+++ + R F+
Sbjct: 181 DRLLALPTFLHAGGSPG-PDGVAQGFTLTGYFLDRHVWGPRGLGPPEERARFV 232
>gi|83951646|ref|ZP_00960378.1| DNA repair protein RecO [Roseovarius nubinhibens ISM]
gi|83836652|gb|EAP75949.1| DNA repair protein RecO [Roseovarius nubinhibens ISM]
Length = 257
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 76/242 (31%), Positives = 128/242 (52%), Gaps = 5/242 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W+D ++L VR +GE ++I++V+T+ +GR+ G VR G S +++P+LQ G + + WR
Sbjct: 1 MIEWRDRGLLLAVRPHGETSVIIDVLTQDHGRYAGVVRGGTSRKLRPVLQPGAELDLVWR 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+RL ++G F E + + A L L GL ++ + RF L ERE L++ L
Sbjct: 61 ARLDSHMGAFTVEPIRASLAVGLGVRQALAGLNAVTAMLRFALAEREAHGPLFERSLGLL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGL 177
+ ++ E+ LL +GFGLDL+ C V G DL +VSP++G AV R
Sbjct: 121 EMIGEAELWPLAYLHWEMALLDELGFGLDLSTCAVLGREANDLSFVSPRTGRAVSRKGAG 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL-QHNIIHCHLLRENFLGKL 236
+A+++L LP+ L E A+ L F +T +FL+++ + R+ + +
Sbjct: 181 EWADRLLPLPNCLL-EIAPAPAEDLVQGFAVTGHFLSQHLAGEMQGKPLPDARQRLIDLV 239
Query: 237 LE 238
Sbjct: 240 AR 241
>gi|302383088|ref|YP_003818911.1| DNA repair protein RecO [Brevundimonas subvibrioides ATCC 15264]
gi|302193716|gb|ADL01288.1| DNA repair protein RecO [Brevundimonas subvibrioides ATCC 15264]
Length = 243
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + ++A +L R++G+ ++++++T +GRH +V G S RM+P LQAG V ++R+
Sbjct: 1 MEFHEEAFVLSARAHGDTGVVVDLLTETHGRHAAYVAGGASRRMKPFLQAGARVIADYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSS-SLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + +LG R E + + L + LPEREP + ++
Sbjct: 61 RTSDHLGSARLEPVGEGPSALFDDGLALAGLSAAAAVAQGALPEREPHPGAFLAFEALMS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+IP+V IFV+ E LL+++GFGLDL++C VTG DL+WVSP++G +V S G PY
Sbjct: 121 AFQIPAVWPAIFVRFEAGLLEDLGFGLDLSRCAVTGTMDDLVWVSPRTGRSVSASAGAPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
A+K+L LP F+ + + +K LT +FL ++ R + KL E
Sbjct: 181 ADKLLKLPPFMLGAQAGLRDGDVKDGLDLTGHFLEQFVFHPQNKPLPTSRTWMIDKLGE 239
>gi|209964784|ref|YP_002297699.1| DNA repair protein RecO, putative [Rhodospirillum centenum SW]
gi|238058647|sp|B6IMY9|RECO_RHOCS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|209958250|gb|ACI98886.1| DNA repair protein RecO, putative [Rhodospirillum centenum SW]
Length = 250
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 5/242 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DDAI+L R +GE + ++TR +GRH G V GQS RM+P+L+ GN V W +
Sbjct: 1 MEWTDDAIVLSARPHGETAALAVLLTRGHGRHAGLVHGGQSGRMRPVLEPGNRVAARWAA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL + LG E+ + A LL L L L S L LPEREP L+D +
Sbjct: 61 RLVEQLGTLALELERATAAGLLEDPLRLAALSSACALVDAALPEREPHPALFDATLALFD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ I+V+ E+ LL+ GFGLD C TG+T + L +VSP++G AV S G
Sbjct: 121 ALQTEVWAE-IYVRWEIGLLEEAGFGLDFGSCAATGITDNDQLAYVSPRTGRAVSLSAGE 179
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
PY +++L LP FL A+ + LT +FL+++ R F+ +
Sbjct: 180 PYRDRLLALPPFLVGRSAGG-AEEVVQGLALTGHFLDRHLFALRHAEVPAARTRFVDRYR 238
Query: 238 EL 239
+
Sbjct: 239 KA 240
>gi|220923264|ref|YP_002498566.1| DNA repair protein RecO [Methylobacterium nodulans ORS 2060]
gi|254764644|sp|B8IL75|RECO_METNO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|219947871|gb|ACL58263.1| DNA repair protein RecO [Methylobacterium nodulans ORS 2060]
Length = 246
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 136/238 (57%), Gaps = 5/238 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ ++LG R +GE +++LE+MT +GRHLG V G+S RMQP+LQ GN VR WR+
Sbjct: 1 MQWSDEGLVLGARRHGETSVVLELMTAGHGRHLGLVHGGRSRRMQPVLQPGNRVRAVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG F E +ES +L+ S L LYGL L R LPER+P LY + +
Sbjct: 61 RLDEGLGHFAVEPIESAAGRLMGSRLALYGLAHAAALLRLLPERDPHPSLYAAAQVLVAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P++ + V+ EL +L ++GFGLDL+ C TG L +VSPKSG AV + G P+
Sbjct: 121 LTDPAIAPALMVRFELAVLADLGFGLDLSACAATGSNAYLAYVSPKSGRAVSAAAGEPWR 180
Query: 181 EKMLVLPSFLW-----KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL T ++ F LT YFL+++ + RE F+
Sbjct: 181 DRLLALPDFLVAREAGGTGATPTPRDVRQGFTLTGYFLDQHVWHPRGVAPPEARELFV 238
>gi|296444472|ref|ZP_06886437.1| DNA repair protein RecO [Methylosinus trichosporium OB3b]
gi|296258119|gb|EFH05181.1| DNA repair protein RecO [Methylosinus trichosporium OB3b]
Length = 240
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 90/234 (38%), Positives = 138/234 (58%), Gaps = 1/234 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +++GVR +GE +ILE+MTR +GRH+G VR G ++ +LQ GN V V WR+
Sbjct: 1 MEWRDEGLVIGVRRHGESAVILELMTRAHGRHMGLVRGGSGRALRSVLQVGNSVEVLWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F E L S A+L+ + L+G+ + L R LPER+ EL++M + +
Sbjct: 61 RLEEHLGAFAVEPLRSRAARLIDRAFALHGVAHLAALLRLLPERDAQRELFEMAELIADR 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + EL LL+ +GFGLD+ +C +TG TQDL +VSPK+G AV R G P+
Sbjct: 121 LDSLDLAPALMARFELALLQALGFGLDVERCALTGATQDLAFVSPKTGRAVTRDAGAPWR 180
Query: 181 EKMLVLPSFLWK-EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L P FL DA L +AF+LT +FL + + R ++
Sbjct: 181 DRLLPFPPFLQDCARAPADASELAAAFRLTGHFLARDVFTPRGLEAPQARALYV 234
>gi|167645704|ref|YP_001683367.1| DNA repair protein RecO [Caulobacter sp. K31]
gi|189039651|sp|B0T3I3|RECO_CAUSK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|167348134|gb|ABZ70869.1| DNA repair protein RecO [Caulobacter sp. K31]
Length = 243
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 1/240 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+A +L R +GE I+E++T++ G+ + V S RM+P LQAG V +R+
Sbjct: 1 MEWEDEAFVLSARVHGETGAIVELLTQERGKFVAHVSGAASRRMKPFLQAGAKVIARYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R++ +G E + + L L + LPERE + L +
Sbjct: 61 RMSDQMGAATLEPMGEGPSSLFDEPLALSGLSAAASVAAGALPEREAHPGAFHALEALIA 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
IP++ ++V+ E LL+++GFGLDL+KC TG DL++VSP++G AV R+ G PY
Sbjct: 121 ALAIPAIWPAVYVRFEAGLLQDLGFGLDLSKCAATGSLDDLVYVSPRTGRAVSRAAGQPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L LP F+ + + +K+ +T +FL ++ R L +L E
Sbjct: 181 HDKLLPLPPFMLSAQGGLVEGDVKAGLDITGHFLEQFVFHPLNRPLPPARVWLLDRLGEA 240
>gi|254420124|ref|ZP_05033848.1| DNA repair protein RecO [Brevundimonas sp. BAL3]
gi|196186301|gb|EDX81277.1| DNA repair protein RecO [Brevundimonas sp. BAL3]
Length = 243
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + ++A +L R++G+ +++++T +GR +V G S +M+P LQAG V ++R+
Sbjct: 1 MDFHEEAFVLSARAHGDTGAVVDLLTESHGRRAAYVAGGASRKMRPFLQAGARVVADYRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLN 119
R + +LG R E + + L +L L GL + + + P ++ +
Sbjct: 61 RTSDHLGGARLEPVGEGPSALFDDALALTGLAAAAGVAQGALPEREPHPGVFLAFEALMA 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+P V IFV+ E LL+++GFGLDL+KC TG DL++VSP++G AV R G PY
Sbjct: 121 AFALPDVWPAIFVRFEAGLLEDLGFGLDLSKCAATGTADDLIYVSPRTGRAVSREAGAPY 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
A+KML LP F+ + + +++ F LT +FL ++ R L +L E
Sbjct: 181 ADKMLSLPPFMLGAQAGLVEGDVRAGFDLTGHFLEQFVFHPQNKPLPAARVWMLDRLAE 239
>gi|329850744|ref|ZP_08265589.1| DNA repair protein RecO [Asticcacaulis biprosthecum C19]
gi|328841059|gb|EGF90630.1| DNA repair protein RecO [Asticcacaulis biprosthecum C19]
Length = 244
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 115/235 (48%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++D+AI+L + +GE IL V+T +G + V G S RM+ LQ G V +R+R
Sbjct: 3 EFEDEAIVLSAKLHGESGAILHVLTENHGVYAAHVAGGASRRMKAALQPGASVLFRFRAR 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ LG E S L S L + + + LPERE Y L+ L
Sbjct: 63 HSEQLGTASVEASGSGPDVLDDSVALLGLQCACLMTRQVLPERERHPGAYYALSALLGAF 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
P + I+V+ E LL+ +G+GLDL+ C VTG DL++VSPKS AV R G Y +
Sbjct: 123 VAPDIWPAIYVRYEAGLLEELGYGLDLSACAVTGSRDDLVYVSPKSARAVSRGAGEAYRD 182
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
K+LVLP FL + + A + LT +FL ++ + +R L
Sbjct: 183 KLLVLPQFLLSSQGGLIAGDVGRGLALTGFFLERHVFHPHNKPLPDVRLRLAEAL 237
>gi|89053018|ref|YP_508469.1| DNA repair protein RecO [Jannaschia sp. CCS1]
gi|119361461|sp|Q28V18|RECO_JANSC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|88862567|gb|ABD53444.1| DNA repair protein RecO [Jannaschia sp. CCS1]
Length = 244
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 7/243 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+ D I+L VR +GE + I+E+ T G HLG VR G S +M P+LQ G + WR+
Sbjct: 1 MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
RL+ ++G + E+++ A+++ + L GL S+ L F LPER L+ L+
Sbjct: 61 RLSDHIGSYTVELVKGRAAEVMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
E+ LL +GFGLDL++C TGVTQDL ++SP++G AV R+ +
Sbjct: 121 GLGAERWAEAYLG-WEMALLTEMGFGLDLSQCAATGVTQDLAFISPRTGRAVSRAAAGEW 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLL 237
A+++L L L E + + + +T +FL L R+ + L
Sbjct: 180 ADRLLPLSPAL--EGMARGPEDILAGLAVTGHFLA-THLAPSLGDKPLPAARQRLIDALE 236
Query: 238 ELI 240
+
Sbjct: 237 RQV 239
>gi|126726092|ref|ZP_01741934.1| DNA repair protein RecO [Rhodobacterales bacterium HTCC2150]
gi|126705296|gb|EBA04387.1| DNA repair protein RecO [Rhodobacterales bacterium HTCC2150]
Length = 245
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 4/241 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D I+ VR +GE + I+EV T+ GRH G VR S ++ P LQ G V V+WR+
Sbjct: 1 MEWRDQGAIISVRHHGETSAIVEVFTKNQGRHAGVVRGATSRKIAPFLQPGGQVDVSWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG F E ++S + + L LPERE LY+ L+
Sbjct: 61 RLNEHLGTFTIEPIQSRAHVMSNPLALAGLNAVCALLQFTLPERESHPRLYETSIALLDS 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
S ++ E++LL ++GFGLDL++C VTG DL +VSPKSG AV +S +A
Sbjct: 121 ISETSDWPLDYLHWEMLLLDDLGFGLDLSECAVTGTQGDLAYVSPKSGRAVSKSGAGEWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH--NIIHCHLLRENFLGKLLE 238
+++L L L + ++ L + T +FL + L R + +L
Sbjct: 181 DRLLPLTPCLI-SDASVGVTELIEGLRTTGHFLENH-LAPELGNRPLPEARARMIDRLGR 238
Query: 239 L 239
L
Sbjct: 239 L 239
>gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040625|gb|ACT57421.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
psy62]
Length = 240
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS
Sbjct: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC
Sbjct: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA
Sbjct: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI
Sbjct: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
>gi|288958668|ref|YP_003449009.1| DNA repair protein RecO [Azospirillum sp. B510]
gi|288910976|dbj|BAI72465.1| DNA repair protein RecO [Azospirillum sp. B510]
Length = 240
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 6/236 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D I+L R GE + + ++TR +GRH G V G+S R + L+ G LV WR
Sbjct: 1 MDWSDQGIVLSARPQGEGSAVATLLTRGHGRHAGMVMGGRSARQRGTLEPGTLVHARWRG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL ++LG F E + + A + L L S L LPERE L+D L +
Sbjct: 61 RLPEHLGHFTLEPVRGYAAGFFDDAQALAALTSACALVEAALPEREAHPALFDGLLVLFG 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
P+ +V+ E+ LL +GFGLDL +C V+G L +VSP++G AV SVG PY
Sbjct: 121 LLDSPAWAE-TYVRWEVGLLAELGFGLDLDRCAVSGANDYLAYVSPRTGRAVTASVGEPY 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+++L LP FL A +LT +FL ++ L RE +
Sbjct: 180 RDRLLPLPDFLAGRGGGGPAAV-ADGLRLTAHFLERHLL---NGPLPPARERLRER 231
>gi|170742438|ref|YP_001771093.1| DNA repair protein RecO [Methylobacterium sp. 4-46]
gi|168196712|gb|ACA18659.1| DNA repair protein RecO [Methylobacterium sp. 4-46]
Length = 267
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 5/238 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D+ ++LG R GE ++LE+MT +GRHLG V G+S RMQP+LQ GN VR WR+
Sbjct: 22 MQWSDEGLVLGARRLGETGVVLELMTAAHGRHLGLVHGGRSRRMQPVLQPGNRVRAVWRA 81
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG F E L+S +L+ S L LYGL L R LPER+P LY+ + ++
Sbjct: 82 RLDDGLGSFAVEPLDSAAGRLIGSRLALYGLAHAAALLRLLPERDPHPGLYEAARVLIDH 141
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ + V+ EL +L +GFGLDL+ C TG L +VSPKSG AV + G P+
Sbjct: 142 LADAAIAPPLMVRFELAVLAELGFGLDLSACAATGSNAYLAYVSPKSGRAVSAAAGEPWR 201
Query: 181 EKMLVLPSFLW-----KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+++L LP FL T A ++ F LT YFL+++ + RE F+
Sbjct: 202 DRLLALPDFLVAREAGGTGATPTARDVRQGFTLTGYFLDQHVWAPRGLAPPEARERFV 259
>gi|296116242|ref|ZP_06834859.1| putative DNA repair protein recO [Gluconacetobacter hansenii ATCC
23769]
gi|295977176|gb|EFG83937.1| putative DNA repair protein recO [Gluconacetobacter hansenii ATCC
23769]
Length = 265
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+ A++L YGE ++I V+T ++G + G VR G + + +P+ QAGNL+ W +
Sbjct: 7 MEWEAPALVLSAVPYGESSMIAHVLTGEHGLYHGMVRGGGARQGRPVWQAGNLITARWNA 66
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPL-FRFLPEREPCLELYDMLNIFLN 119
RL + LG R E++ + A++L + L L S+ L LPEREP L +++ L L
Sbjct: 67 RLPEQLGSLRGELVHASAARVLEYAHPLAMLASLCALADSSLPEREPHLAVFEELTRLLA 126
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ ++ E++LL ++GFGLDL+ C V+G DL WVSP+SG AV
Sbjct: 127 RISLEPAEAERSGMAALIRWEMLLLSDLGFGLDLSCCAVSGQADDLAWVSPRSGRAVSDG 186
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+ +++L+LP FL Q + + +LT +FL + A R L
Sbjct: 187 HAGQWRDRLLMLPPFLLDPTQDGTPEQWLAGLRLTGHFLARDAFGQRHRPLPAARIRLLD 246
Query: 235 KLLELI 240
+ ++
Sbjct: 247 MVGRMV 252
>gi|315122361|ref|YP_004062850.1| DNA repair protein RecO [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495763|gb|ADR52362.1| DNA repair protein RecO [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 240
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 182/240 (75%), Positives = 217/240 (90%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+WQDDAI+LGVRSYGEKNIILEVMTR YGRHLGFVR GQS R+QP+LQ GNLVRVNWRS
Sbjct: 1 MHWQDDAIVLGVRSYGEKNIILEVMTRHYGRHLGFVRYGQSRRIQPVLQVGNLVRVNWRS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL Q+LGEFR E++E C+KLLSS++ LYGLQS++P+FRFLPER+PC +LYD+LN+F+N
Sbjct: 61 RLEQDLGEFRLEIIEYRCSKLLSSAISLYGLQSMIPIFRFLPERDPCPDLYDLLNLFINS 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
HKI S++GKIF+QIEL+LLKNIGFGL++TKCVVTGV+ DL WVSPKSGGA+C S+GLPYA
Sbjct: 121 HKISSILGKIFIQIELILLKNIGFGLEITKCVVTGVSHDLSWVSPKSGGAICHSLGLPYA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
KMLVLP FLWKE+Q IDADSL++AF+LT YFL+KYA QHNIIHC+ LR NFL KL+EL+
Sbjct: 181 SKMLVLPLFLWKEQQNIDADSLRNAFRLTGYFLDKYAFQHNIIHCNSLRINFLNKLIELL 240
>gi|222148084|ref|YP_002549041.1| DNA repair protein RecO [Agrobacterium vitis S4]
gi|221735072|gb|ACM36035.1| DNA repair protein RecO [Agrobacterium vitis S4]
Length = 264
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/245 (44%), Positives = 160/245 (65%), Gaps = 5/245 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D AI+LG R +GE ++I E+MT GRHLG VR G+S MQP+LQ GN+V V WR+
Sbjct: 1 MEWTDQAIVLGARRHGETSVIAEMMTLARGRHLGLVRGGRSRTMQPVLQPGNVVEVTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG+FR E L+ L+SS+ +YG+Q++ L R LPEREP LY+ +NI L+
Sbjct: 61 RLEEHLGDFRVEPLQLRAGHLMSSATAVYGVQALASLLRLLPEREPHGHLYEAMNIILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++F++ EL +L ++GFGLDLT C TG QDL++VSPK+G AV + GLPYA
Sbjct: 121 LHEPASAGELFIRFELAILNDLGFGLDLTACAATGGRQDLVFVSPKTGRAVSHAAGLPYA 180
Query: 181 EKMLVLPSF-----LWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+++L LP F L +++ DA +L+ AF+LT YFL ++ + + R+ F
Sbjct: 181 DRLLTLPVFLQPEPLVGKDKQADAQALQQAFRLTGYFLQRHVYEPRGLTAGAARDGFCQA 240
Query: 236 LLELI 240
L+ +
Sbjct: 241 ALKAL 245
>gi|154253316|ref|YP_001414140.1| DNA repair protein RecO [Parvibaculum lavamentivorans DS-1]
gi|154157266|gb|ABS64483.1| DNA repair protein RecO [Parvibaculum lavamentivorans DS-1]
Length = 234
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 1/228 (0%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEF 69
L R++GE ILE+ TR+ GRHLG V G RM+ +LQ GN + +WR RL+++LG +
Sbjct: 2 LSARAHGETGAILELFTREQGRHLGLVHGGAGRRMRSVLQPGNKLAAHWRGRLSEHLGTY 61
Query: 70 RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGK 129
+ E+++ L+ L L GL + + LPERE LYD + L+ + V
Sbjct: 62 QVELVKPLAGLLMDDPLALLGLSAASAICSILPEREAHPALYDGYEVLLDTMRDEDVWPA 121
Query: 130 IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSF 189
+FV+ EL LL+ +GFGLDLT+C TG DL +VSP+SG AV R G Y E++ LP F
Sbjct: 122 VFVRWELGLLQELGFGLDLTQCAATGSRDDLAYVSPRSGSAVSRGAGEIYKERLFRLPGF 181
Query: 190 LWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
L + +A + +LT +FL ++ + H R + K+
Sbjct: 182 LVGSQAGAAEAADVAEGLRLTGHFLERHLFAAHERHLPDARIRLMEKM 229
>gi|307946583|ref|ZP_07661918.1| DNA repair protein RecO [Roseibium sp. TrichSKD4]
gi|307770247|gb|EFO29473.1| DNA repair protein RecO [Roseibium sp. TrichSKD4]
Length = 256
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W I+LG R +GE ++ILEVMT YGRHLG VR G+S QP +Q GN ++V WR+
Sbjct: 1 MEWTATGIVLGSRKHGENDVILEVMTETYGRHLGLVRGGRSRTRQPQIQPGNELQVTWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG + E L A+L++S L L+G+Q + L R LPER+P LY L + L+
Sbjct: 61 RLPEQLGTYSIEPLRLRAAELMASPLGLHGVQHLGALLRMLPERDPHAALYRALTLVLDQ 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL +GFGLDL+ C TG +DL +VSPKSG AV R G PY
Sbjct: 121 LQDGDIGPPLLIRFELELLNELGFGLDLSCCAATGSQEDLAYVSPKSGRAVSRDAGQPYH 180
Query: 181 EKMLVLPSFLWKEEQTID----ADSLKSAFQLTDYFLNKY 216
+K+L LP FL ++ L + F+LT +FL ++
Sbjct: 181 DKLLPLPDFLIDGQRQPGSELLFKDLSNGFKLTRFFLARH 220
>gi|114799258|ref|YP_759606.1| DNA repair protein RecO [Hyphomonas neptunium ATCC 15444]
gi|122942647|sp|Q0C3T7|RECO_HYPNA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|114739432|gb|ABI77557.1| DNA repair protein RecO [Hyphomonas neptunium ATCC 15444]
Length = 243
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 3/239 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I+LG R +GE +IL+V+TR+ GR G V G S R + +AGN + ++W
Sbjct: 1 MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTG 60
Query: 61 RLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIF 117
RL LG F + ++LL L L +I L R LY+ +
Sbjct: 61 RLDDQLGRFDVAEARKDRASRLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLL 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L+ P+V ++V+ EL LL +GFGLDL +C V+G L VSP++G AV S
Sbjct: 121 LDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGANDGLTHVSPRTGRAVRGSEAE 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
PY +++ LPSFL + + + +LT YF+ RE L ++
Sbjct: 181 PYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRI 239
>gi|312115948|ref|YP_004013544.1| DNA repair protein RecO [Rhodomicrobium vannielii ATCC 17100]
gi|311221077|gb|ADP72445.1| DNA repair protein RecO [Rhodomicrobium vannielii ATCC 17100]
Length = 241
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 83/240 (34%), Positives = 120/240 (50%), Gaps = 3/240 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD I L R +GE ++I ++ TR GR G V+ G+S R++P+LQ GN + V WR+
Sbjct: 1 MRWADDGIFLAGRPHGETSVIADIFTRANGRAKGLVKGGRSRRLRPLLQTGNTLGVEWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG + E+ + A L L G+ ++ L + L ER+P LYD L
Sbjct: 61 RLDDQLGVYTVELARATAANALDDPSALAGMTALAALLQVLAERDPHPALYDAAQDCLAH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ F++ EL L +GFGL+L C TG DL++VSPKSG AVCR G PYA
Sbjct: 121 -ASDASFPAAFIRFELRFLNELGFGLNLATCAATGRADDLIYVSPKSGQAVCREAGEPYA 179
Query: 181 EKMLVLP--SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+++L LP +++ LT +FL + + R+ F L
Sbjct: 180 DRLLPLPAFLANAASAAAPSDAEIEAGLLLTGHFLAVHVFAESGKPLPTARDEFARTLRR 239
>gi|260576291|ref|ZP_05844283.1| DNA repair protein RecO [Rhodobacter sp. SW2]
gi|259021559|gb|EEW24863.1| DNA repair protein RecO [Rhodobacter sp. SW2]
Length = 238
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 113/239 (47%), Gaps = 2/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D +L VR +GE I+EV T +GRH G VR G S R+ P+LQ G + V WR+
Sbjct: 1 MEWRDQGALLSVRPHGESAAIIEVFTAAHGRHAGVVRGGASRRIAPLLQPGAQLDVVWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++G F E + S L + LPER P LY L+
Sbjct: 61 RLEGHIGAFTVEPVRSRAGVLGDRLALAGLNAICAMVRVALPERAPHDLLYAATIAVLDA 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ +++ EL+LL+ +GFGLDL +C VTG DL +VSPK+G AV R +A
Sbjct: 121 LETAPDWPARYLRWELLLLEELGFGLDLGRCAVTGSRDDLAYVSPKTGRAVSRDGAGEWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNII-HCHLLRENFLGKLLE 238
++L LP L + L + +T +FL + + H R L L
Sbjct: 181 ARLLPLPDCLLGQG-PASGADLAAGLAVTGHFLTREMASLRHVQHLPEARARLLELLAR 238
>gi|118587959|ref|ZP_01545369.1| DNA repair protein RecO [Stappia aggregata IAM 12614]
gi|118439581|gb|EAV46212.1| DNA repair protein RecO [Stappia aggregata IAM 12614]
Length = 251
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 4/225 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W ++L R +GE ++ILE MT +GRHLG VR G+S R +P+LQ GN + + W++
Sbjct: 1 MEWSGRGVVLTTRKHGENDVILEAMTLDHGRHLGLVRGGRSRRHRPVLQPGNELTLTWKA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL+ +LG+F E L++SSL L LQ + L R LPER L++ L + L+
Sbjct: 61 RLSDHLGQFHIEPETLRAGDLMTSSLGLAALQHLAFLLRLLPERHTYPRLFNALTVVLDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + ++ EL +L+++G GLDL+ C TG +DL +VSPKS AVCR GLPY
Sbjct: 121 LEASDAAAALLIRFELEVLRDLGIGLDLSSCAATGSNEDLAYVSPKSARAVCREAGLPYH 180
Query: 181 EKMLVLPSFLWKE----EQTIDADSLKSAFQLTDYFLNKYALQHN 221
+++L LP FL + + F LT +FLN+Y +H
Sbjct: 181 DRLLPLPGFLLDGQRQAGSELTWADVTQGFDLTSFFLNRYLQEHG 225
>gi|162148788|ref|YP_001603249.1| DNA repair protein recO [Gluconacetobacter diazotrophicus PAl 5]
gi|189039658|sp|A9HRQ4|RECO_GLUDA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|161787365|emb|CAP56960.1| putative DNA repair protein recO [Gluconacetobacter diazotrophicus
PAl 5]
Length = 254
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 6/242 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+ A++L YGE + I+ ++T G G R G + + + Q GNL+R +WR
Sbjct: 1 MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL LG E++ A+L+S+ L L L S + LPEREP ++ +L F +
Sbjct: 61 RLPDQLGNLSGELVHGSAARLMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFS 120
Query: 120 CHKIPSVIGKIFV-----QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + + E LL ++G+G+DL+ C VTG + +L WVSP++G AV +
Sbjct: 121 LLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVTGGSAELAWVSPRTGRAVSDA 180
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+ ++L LP E + +LT +FL + A R +
Sbjct: 181 AAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD 240
Query: 235 KL 236
+
Sbjct: 241 MI 242
>gi|209545462|ref|YP_002277691.1| DNA repair protein RecO [Gluconacetobacter diazotrophicus PAl 5]
gi|209533139|gb|ACI53076.1| DNA repair protein RecO [Gluconacetobacter diazotrophicus PAl 5]
Length = 254
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 6/242 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+ A++L YGE + I+ ++T G G R G + + + Q GNL+R +WR
Sbjct: 1 MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RL LG E++ A+L+S+ L L L S + LPEREP ++ +L F +
Sbjct: 61 RLPDQLGNLSGELVHGSAARLMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFS 120
Query: 120 CHKIPSVIGKIFV-----QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + + E LL ++G+G+DL+ C VTG + +L WVSP++G AV +
Sbjct: 121 LLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVTGGSAELAWVSPRTGRAVSDA 180
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+ ++L LP E + +LT +FL + A R +
Sbjct: 181 AAGEWRPRLLRLPPLFLNESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD 240
Query: 235 KL 236
+
Sbjct: 241 MI 242
>gi|330994746|ref|ZP_08318668.1| DNA repair protein recO [Gluconacetobacter sp. SXCC-1]
gi|329758007|gb|EGG74529.1| DNA repair protein recO [Gluconacetobacter sp. SXCC-1]
Length = 263
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 6/244 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+ A++L YGE + I+ V+T +YG + G R G + R + Q GNLVR W +
Sbjct: 1 MEWEAPALVLSATPYGEGSAIVHVLTGEYGLYHGLARGGSASRGRATWQTGNLVRARWTA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPL-FRFLPEREPCLELYDMLNIFLN 119
RL + LG E + + A+LL L L L S+ L LPEREP ++ L L
Sbjct: 61 RLPEQLGSITAETVHASAARLLDYPLPLAMLASLCALADDCLPEREPHPAIFQGLTSLLA 120
Query: 120 CHKIPSVIGKI-----FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + V+ ELMLL ++GFGLDL C + G +DL WVSP++G AV
Sbjct: 121 RISLDPQWAETEAMPEIVRWELMLLSDLGFGLDLGGCALGGSREDLRWVSPRTGRAVSDE 180
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+ +++L LP F+ +Q +L+ +FL + A R
Sbjct: 181 KAGAWRDRLLPLPGFILHPQQVATPRDWHDGLRLSGHFLRRDAFGQRHRPVPEARGRLAD 240
Query: 235 KLLE 238
+
Sbjct: 241 MIAR 244
>gi|319405460|emb|CBI79079.1| DNA repair protein RecO [Bartonella sp. AR 15-3]
Length = 248
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 105/239 (43%), Positives = 150/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R +GE ++ILE+MTRQ+GR++G V+ G+S RM P+LQ GN V W +
Sbjct: 1 MKWKEPAIILGTRQHGETSVILEIMTRQHGRYMGIVKGGRSRRMAPLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+SH ++L+ LY LQ + R LPER+P LYDML F+
Sbjct: 61 RLDEHLGLFRLEALDSHASRLIVLPEALYSLQLMASHLRLLPERDPHPVLYDMLYFFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + ++ V+ EL+LL+ +GFGLDL+ C VTG + L +VSPKSG AVC +G P+
Sbjct: 121 FDDPFINAELLVRFELLLLEELGFGLDLSCCAVTGRQEKLCYVSPKSGRAVCEEIGRPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL ++ ID D + LTD+FL +Y + I LR + +
Sbjct: 181 DKLLLLPQFLVQKTACPIDFDDINKGLTLTDFFLTRYVWEARGIKQPSLRVSLIQLFER 239
>gi|294084098|ref|YP_003550856.1| DNA repair protein RecO [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663671|gb|ADE38772.1| DNA repair protein RecO [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 250
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 6/240 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W DA+I+ + +GE + ++ V+T + GRH G VR G S +M+ ILQ GN VRV+WR+R
Sbjct: 3 EWVADAVIISAKPHGEGSAVVIVLTAENGRHAGLVRGGSSSKMRGILQPGNRVRVSWRAR 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLNC 120
L LG+ + E++ + A +L +L L G+ S L LPERE LYD N +
Sbjct: 63 LIDQLGQMQIELINAIPALMLDDALRLAGIASACALLDGTLPEREAQHALYDGTNALFDL 122
Query: 121 H---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ +++ EL LL G+ LDLT+C +G + L +VSPKSG A+
Sbjct: 123 MCLDDPDHRWIEGYIRWELGLLNAAGYQLDLTRCAASGAREKLAYVSPKSGCAIALDQAG 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
Y ++ML LP FL S LT +FL K + + R +L
Sbjct: 183 EYVQRMLTLPVFLGGITNVASDH--VSGLNLTGHFLEKRVFAAHNQDLPIQRRRLADMVL 240
>gi|294678824|ref|YP_003579439.1| DNA repair protein RecO [Rhodobacter capsulatus SB 1003]
gi|294477644|gb|ADE87032.1| DNA repair protein RecO [Rhodobacter capsulatus SB 1003]
Length = 240
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 112/239 (46%), Gaps = 2/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD IL R +GE + I+EV T +GRHLG VR G S +M +L G+ V V WR+
Sbjct: 1 MDWQDSGTILSTRLHGESSAIVEVFTATHGRHLGVVRGGASRKMAAVLMPGSHVAVAWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL LG F E L S L + L L ER P LY
Sbjct: 61 RLEDQLGSFTVEPLASRAGALSDRLALMGLNAVCALLSFVLAERAPHPRLYAATEPLFTV 120
Query: 121 HKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ E+ LL+++GFGLDL++C VTG DL +VSP++G AV R+ +
Sbjct: 121 IGQAAEGWVVDYLIWEMALLEDLGFGLDLSRCAVTGTRDDLAFVSPRTGRAVSRAGAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
A K+L LP L + + LT +FL ++A +H+ R + +
Sbjct: 181 APKLLPLPLCLLGQG-PATWTEIGQGLTLTGHFLTRFASEHSRKALPEARNRLIAAIAR 238
>gi|146278602|ref|YP_001168761.1| DNA repair protein RecO [Rhodobacter sphaeroides ATCC 17025]
gi|172046019|sp|A4WVP2|RECO_RHOS5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145556843|gb|ABP71456.1| DNA repair protein RecO [Rhodobacter sphaeroides ATCC 17025]
Length = 237
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/237 (30%), Positives = 113/237 (47%), Gaps = 3/237 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W+D+ +L VR +GE I+EV T +GRHLG VR G S R P+LQ G + + W++R
Sbjct: 3 EWRDEGALLSVRRHGESAAIIEVFTASHGRHLGVVRGGASRRHAPVLQPGAQLDLTWKAR 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L ++G F E L + L LPEREP + L+ ++
Sbjct: 63 LDDHMGAFTVEPLRARTGIFGDRLALAGLNAICAMLHVVLPEREPHVGLWRESIELMDAL 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+++ E+ LL+ GFGLDLT+C VTG +DL +VSP++G AV R+ +A+
Sbjct: 123 A-APGWPAAYLRWEMRLLEEAGFGLDLTRCAVTGSREDLAFVSPRTGRAVGRAAAGDWAD 181
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
++ LP L + ++ +T +FL + L R + L
Sbjct: 182 RLFPLPLALLGQG-PASGPEVRQGLAITGHFLARE-LPLAGRPLPEARARLIDLLAR 236
>gi|254293710|ref|YP_003059733.1| DNA repair protein RecO [Hirschia baltica ATCC 49814]
gi|254042241|gb|ACT59036.1| DNA repair protein RecO [Hirschia baltica ATCC 49814]
Length = 290
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 122/239 (51%), Gaps = 2/239 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W D AI LG R++GE ++IL+V T GR G V G S + +P+++AGN + V W+++
Sbjct: 3 EWSDTAISLGARTFGETDVILDVFTPSRGRTRGLVYGGISQKKRPMIEAGNTIDVQWKAK 62
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
+LG F + A+ + L L GL ++ + R LPE E LY+ L+
Sbjct: 63 TESSLGHFSVADAINQRAARCMIDPLALAGLSAVTSILRDGLPEGEAKDGLYEATETLLD 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
P + IF++ EL L+ +G+GL+L CV++G L VSPKSG AV S Y
Sbjct: 123 VMGEPDIWPAIFIKWELGFLQQMGYGLNLETCVISGANDGLTHVSPKSGCAVRGSEAEEY 182
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L LP+FL + + + F+LT YFL + R L +L +
Sbjct: 183 IDKLLSLPAFLTDAKAPPSPYDIGAGFKLTGYFLTRRLFADINRDAPEARYLMLERLEK 241
>gi|114327658|ref|YP_744815.1| DNA repair protein recO [Granulibacter bethesdensis CGDNIH1]
gi|122327371|sp|Q0BTG0|RECO_GRABC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|114315832|gb|ABI61892.1| DNA repair protein recO [Granulibacter bethesdensis CGDNIH1]
Length = 250
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 3/239 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W I+L + YGE + + V + G + G VR G S + I Q GNLV W +
Sbjct: 1 MEWTAPCIVLSAQPYGEADCLAAVFSEDQGLYRGLVRGGTSRQRGGIWQPGNLVMARWTA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
RLA LG E++ A + L L L+S+ + LP+RE + L L
Sbjct: 61 RLADQLGSLTAELIHPAAALAMDDPLNLAVLRSLCTVAEGALPDREAHPAAFIPLPGLLT 120
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + ++ E +LL+ +G+GLDL +C VTG L +VSP++G AV P
Sbjct: 121 RLSLGGGQVVEDAIRWEAILLRELGYGLDLQRCAVTGQVSGLHYVSPRTGRAVSSDAAEP 180
Query: 179 YAEKMLVLPSFLWKEEQT-IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
+ +++L LP+FL + +T D + + +LT YFL++ R + ++
Sbjct: 181 WLDRLLPLPAFLLHQAETDSDPVAWRDGLRLTGYFLSRDVFGTRHRPLPPARMSLYDRI 239
>gi|254502661|ref|ZP_05114812.1| DNA repair protein RecO [Labrenzia alexandrii DFL-11]
gi|222438732|gb|EEE45411.1| DNA repair protein RecO [Labrenzia alexandrii DFL-11]
Length = 244
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 91/234 (38%), Positives = 129/234 (55%), Gaps = 5/234 (2%)
Query: 9 ILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGE 68
+L R +GE ++ILEVMT GRHLG VR G+S R +P LQ GN + + W++RL+ +LG+
Sbjct: 2 VLTTRKHGENDVILEVMTADSGRHLGLVRGGRSKRHRPALQPGNELSLTWKARLSDHLGQ 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG 128
F+ E + A L++S + L +Q + L R LPER P +Y LN+ L+
Sbjct: 62 FQIEPHTARAADLMNSGIGLAAVQHLAALVRLLPERHPYPRIYGALNVVLDHLDASDAAA 121
Query: 129 KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
+ ++ EL LL+ +G GLDLT C TG T DL +VSP+S AV R G PY +K+L LPS
Sbjct: 122 ALMIRFELELLQELGAGLDLTSCAATGTTDDLAYVSPRSARAVSREAGRPYHDKLLPLPS 181
Query: 189 FLWKE----EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
FL + + FQLT +FL++ L I R L +
Sbjct: 182 FLLDGQRQAGTELTWQDVTQGFQLTGFFLDRQ-LGERNITDSGTRTLLTNALEK 234
>gi|83593184|ref|YP_426936.1| DNA repair protein RecO [Rhodospirillum rubrum ATCC 11170]
gi|119361481|sp|Q2RT96|RECO_RHORT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|83576098|gb|ABC22649.1| Recombination protein O, RecO [Rhodospirillum rubrum ATCC 11170]
Length = 252
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 8/246 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W D I+L R +GE +I+ +++ +GRH G VR G+ R++ LQ G+LV+ W+
Sbjct: 1 MIEWSDRGIVLAARPHGEDGVIVSLLSAGHGRHSGIVRGGRGKRLRAALQPGSLVQATWK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+RL +LG E+L LL L L + L + + L
Sbjct: 61 ARLEDHLGSLVVELLAGVAGGLLDDRDRLAALAAACALAETVLPERAPQADVYDATLALL 120
Query: 120 C------HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
P V FV+ E+ LL +GFGLDL+ C V+G DL +VSP+SG AV R
Sbjct: 121 DALAEGGEGTPLVWAGAFVRWEIGLLAALGFGLDLSCCAVSGECGDLAYVSPRSGRAVGR 180
Query: 174 SVGLPYAEKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
G P+ ++L LP+FL + +A ++ +L+ YFL + L R+ F
Sbjct: 181 EAGAPWQARLLALPAFLLSPAEVPANAQAVGDGLRLSGYFLEGHVLAPQGRGLPASRQRF 240
Query: 233 LGKLLE 238
+ +L
Sbjct: 241 VERLRR 246
>gi|319404020|emb|CBI77608.1| DNA repair protein RecO [Bartonella rochalimae ATCC BAA-1498]
Length = 248
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R +GE ++ILE+MTRQ+GR++G V+ G+S RM P+LQ GN V W +
Sbjct: 1 MKWKEQAIILGTRQHGETSVILEIMTRQHGRYMGIVKGGRSRRMAPLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L H ++L+ LY LQ + R LPER+P LYDML F+
Sbjct: 61 RLDEHLGLFRLEALNLHASRLIVLPEALYSLQLMAFYLRLLPERDPHPVLYDMLYFFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P + ++ V+ EL+LL+ +GFGLDL+ C VTG + L +VSPKSG AVC +G P+
Sbjct: 121 FEDPFINAELLVRFELLLLEELGFGLDLSCCAVTGRQEKLYYVSPKSGRAVCEEIGRPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL ++ +D + + LT++FL +Y + I LR + +
Sbjct: 181 DKLLLLPQFLVQKSVYPVDFNDISKGLILTNFFLTRYVWEARGIKQLSLRVSLIQLFER 239
>gi|319407033|emb|CBI80670.1| DNA repair protein RecO [Bartonella sp. 1-1C]
Length = 248
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 1/239 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R +GE ++ILE+MTRQ+GR++G V+ G+S RM P+LQ GN V W +
Sbjct: 1 MKWKEQAIILGTRQHGETSVILEIMTRQHGRYMGIVKGGRSRRMAPLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ H ++L+ LY LQ + R LPER+P LYDML F+
Sbjct: 61 RLDEHLGLFRLEALDLHASRLIVLPEALYSLQLMAFYLRLLPERDPHPVLYDMLYFFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ P + ++ V+ EL+LL+ +GFGLDL+ C VTG + L +VSPKSG AVC +G P+
Sbjct: 121 FEDPFINAELLVRFELLLLEELGFGLDLSCCAVTGRQEKLYYVSPKSGRAVCEEIGRPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL ++ +D + + LT++FL +Y I LR + +
Sbjct: 181 DKLLLLPKFLVQKNVYPVDFNDISKGLILTNFFLTRYVWDARGIKQSSLRVSLIQLFER 239
>gi|304321235|ref|YP_003854878.1| DNA repair protein RecO [Parvularcula bermudensis HTCC2503]
gi|303300137|gb|ADM09736.1| DNA repair protein RecO [Parvularcula bermudensis HTCC2503]
Length = 243
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 6/242 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W D ++ GE ++++ + TR G G V GQ R P+LQ GNLV +W SR
Sbjct: 3 EWTDRGFVIKTIPRGENHLVVTLFTRCRGAVTGLVHGGQGTRKAPLLQRGNLVSADWSSR 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLNC 120
A G +R E+ E+ A+ L S L L LQS+ L LPE L+D +F +
Sbjct: 63 QADGYGTYRLELAEAIAARALDSRLSLLALQSVTDLLCEILPEGVAYEGLFDATEVFFSA 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT----QDLLWVSPKSGGAVCRSVG 176
+++ + V+ EL LL +G+GL L +C TG T DL++VSPKSGGAV G
Sbjct: 123 LGEKAIMATLLVKWELGLLAALGYGLSLERCAATGRTLEDGADLVFVSPKSGGAVTAEAG 182
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
PYA+++L LP FL + + + +LT FL++ L R + +L
Sbjct: 183 APYADRLLPLPPFLIDRGEP-TWPDIAAGLRLTGTFLDERLLAPVGKSLPEARGQLIRRL 241
Query: 237 LE 238
Sbjct: 242 TR 243
>gi|94498593|ref|ZP_01305147.1| Recombinational DNA repair protein (RecF pathway)-like
[Sphingomonas sp. SKA58]
gi|94421957|gb|EAT07004.1| Recombinational DNA repair protein (RecF pathway)-like
[Sphingomonas sp. SKA58]
Length = 244
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 4/237 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
AI+ VR++GE I ++T +G G+VR G+S M+P+L GN+V+ ++R+R L
Sbjct: 8 AIVCAVRAHGEHGAIARLLTPDHGLMAGYVRGGRSRAMRPVLLPGNVVKADFRARTEDQL 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS- 125
E+ S L S LPE P LY L L+ +
Sbjct: 68 AGLAVELAHSRAPLLAEPLPAAAIDWSCALTAAALPEATPYPALYQALAGLLDAVEAAPA 127
Query: 126 --VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
V+ EL+LL +GFGLDL++C G DL +VSP+S AV R+ L Y +++
Sbjct: 128 ARGWAVALVRYELLLLTELGFGLDLSRCAALGDVNDLAFVSPRSAAAVSRAGALGYEQRL 187
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
L LP FL D + +LT +FL + + R+ + +L +
Sbjct: 188 LPLPPFLVGGG-AGDWADIMDGLRLTGFFLERSVMTERRTDVLAARDRLVERLKRAV 243
>gi|148557387|ref|YP_001264969.1| DNA repair protein RecO [Sphingomonas wittichii RW1]
gi|254790737|sp|A5VEW5|RECO_SPHWW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148502577|gb|ABQ70831.1| DNA repair protein RecO [Sphingomonas wittichii RW1]
Length = 243
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 117/242 (48%), Gaps = 3/242 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + AII +R++GE I+ +T +G G+VR G+S R++P+L AGNLV +R+
Sbjct: 1 MQVRTPAIICAMRAHGEHGAIVRALTPDHGLLAGYVRGGRSRRLRPVLVAGNLVEAEFRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A+ L E+ S L L E +P LY+ L+ L
Sbjct: 61 RTAEQLPGLTVELSHSRAGLLAEPLAAAAIDWLSSLTAASLAEGQPHARLYEALDAVLAA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ V+ ELML+ ++G+ LDL+ C TG DL +VSPKSGGAV R+ G
Sbjct: 121 IEYAPSARGWAAAAVRYELMLMADLGYALDLSACAATGARDDLAYVSPKSGGAVSRAAGE 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
PYA ++L LP+FL D + +LT +FL + L R+ + ++
Sbjct: 181 PYAARLLPLPAFLVDPSADSDWSDIVDGMRLTGHFLARDILVDRRADALDARQRLVDRIG 240
Query: 238 EL 239
L
Sbjct: 241 RL 242
>gi|71083742|ref|YP_266462.1| recombination protein O [Candidatus Pelagibacter ubique HTCC1062]
gi|91763222|ref|ZP_01265186.1| Recombination protein O [Candidatus Pelagibacter ubique HTCC1002]
gi|71062855|gb|AAZ21858.1| Recombination protein O [Candidatus Pelagibacter ubique HTCC1062]
gi|91717635|gb|EAS84286.1| Recombination protein O [Candidatus Pelagibacter ubique HTCC1002]
Length = 226
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 11/237 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D A ++ Y E +II EV T +G+ G + G S +++ LQ GN + VN+ S
Sbjct: 1 MNWDDSAYLVSKNRYSENSIIAEVFTENHGKISGIIFGGTSKKIKNYLQIGNKIYVNYNS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +G F+ E+L++ + L + S + L + L + L
Sbjct: 61 KSVTRIGYFKIEILKALTPLYFDQNQKLSCITSAMHLIKLLTAEAQSNKEIFKLIDKFFE 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ ++ EL LLK +G+ L+L + + KS
Sbjct: 121 ILNSENWIQKYIFWELELLKLLGYDLELKTMAEKEIVDSEVNYYVKSSTEKKSIPNFLID 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
E + + + + +L K L+ N ++ R +F+ L
Sbjct: 181 ENNMDVNLKNLLKGLKL-----------VSDYLEKSILKPNNLNLPTSRTHFINLLK 226
>gi|119385562|ref|YP_916617.1| DNA repair protein RecO [Paracoccus denitrificans PD1222]
gi|254764650|sp|A1B5X7|RECO_PARDP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119376157|gb|ABL70921.1| DNA repair protein RecO [Paracoccus denitrificans PD1222]
Length = 242
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 5/237 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W +A ++ ++ +GE +IL V++R+ G G V G S + +LQ GN V + WR+
Sbjct: 1 MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL + LG F E + L S L LPER+P L D L+
Sbjct: 61 RLEEQLGTFAVEPARARPGLLGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDL 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ ++ E+ LL +GFGLDLT C VTG + L +VSP+SG AV +A
Sbjct: 121 MDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGLAYVSPRSGRAVSAQAAGEWA 180
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGKL 236
++L LP+ L ++ A LT +FL + + R + +L
Sbjct: 181 PRLLPLPAMLGGRGNGG----IEDALALTGHFLQVRLAEAHAGKPLPPARARLVARL 233
>gi|294012225|ref|YP_003545685.1| DNA repair protein RecO [Sphingobium japonicum UT26S]
gi|292675555|dbj|BAI97073.1| DNA repair protein RecO [Sphingobium japonicum UT26S]
Length = 244
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 4/239 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
A++ +R +GE I ++T +G G+VR G+S R++P+L GN V+ +R+R +
Sbjct: 6 TPALVCALRPHGEHGAIARLLTPGHGLLAGYVRGGRSRRLRPVLLPGNAVKAEFRARTEE 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
L E+ S L + LPE P L+ L+ L +
Sbjct: 66 QLAGLTVELEHSRAPLLAEPLPAAAIDWACALTAVALPEATPYPALHQALDGVLGAVEAA 125
Query: 125 S---VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
++ EL+LL +GFGLDL +C TG DL +VSP+S AV R+ + Y +
Sbjct: 126 PAARGWATALIRYELLLLAELGFGLDLGRCAATGGNDDLAYVSPRSAAAVSRAGAVGYED 185
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
++L LP+FL + + +LT +FL + L + RE + +L +
Sbjct: 186 RLLPLPAFLLEGGAGEWPA-ILDGLRLTGFFLERSVLTDWRVDVLAARERLVDRLKRAV 243
>gi|258543012|ref|YP_003188445.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-01]
gi|256634090|dbj|BAI00066.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-01]
gi|256637150|dbj|BAI03119.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-03]
gi|256640202|dbj|BAI06164.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-07]
gi|256643259|dbj|BAI09214.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-22]
gi|256646314|dbj|BAI12262.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-26]
gi|256649367|dbj|BAI15308.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-32]
gi|256652353|dbj|BAI18287.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655411|dbj|BAI21338.1| DNA repair protein RecO [Acetobacter pasteurianus IFO 3283-12]
Length = 263
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 6/240 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ A++L GE + + V+T YG G G S + + Q GN+V+ + R A
Sbjct: 12 EAPALVLFAGVQGETSARVHVLTEDYGPLRGIAYGGASKAGRALWQPGNVVKTSLHKRSA 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNCHK 122
+ E+L + A+LL + L L +QS+ L +PC L+ L
Sbjct: 72 AAPLQISAELLYACAARLLDAPLALSMVQSVCVLADVTLPEADPCPFLFAETVRLLTFLG 131
Query: 123 IPSVI-----GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
VI V+ E+ LL +GFGLDL+ C VTG T++L +VSP++G AV
Sbjct: 132 YDPVIAEREGMPHVVRWEMALLATLGFGLDLSACAVTGSTENLHYVSPRTGRAVSEEGAG 191
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ +++L LPSFL EQT +A + +LT +FL + A + R+ +L
Sbjct: 192 EWKDRLLPLPSFLQDTEQTGNAADWLAGLRLTGHFLARDAFGQRHLPLPAARQRLYDRLE 251
>gi|296535950|ref|ZP_06898099.1| recombination protein O [Roseomonas cervicalis ATCC 49957]
gi|296263723|gb|EFH10199.1| recombination protein O [Roseomonas cervicalis ATCC 49957]
Length = 250
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 81/238 (34%), Positives = 116/238 (48%), Gaps = 2/238 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQ AI+L R +GE ++ V+T +GRH G V G S + Q GNLV V WR
Sbjct: 1 MEWQAPAIVLEARPHGEGAAVVSVLTEDHGRHAGLVHGGASRAQSGLWQPGNLVEVRWRG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
RLA+ LG E++ A L L L LQS L LPERE ++ L +
Sbjct: 61 RLAEQLGSLSGEMVHPTAALALDEPLTLALLQSACALATDALPEREAQPRIFSGLLALMA 120
Query: 120 CHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ +++ E +LL+ +G+GLDL+ C VTG ++L VSP+SG AV P
Sbjct: 121 QLGRGAPALLADYIRWEALLLEGLGYGLDLSVCAVTGAAENLTHVSPRSGRAVSAEAAAP 180
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
Y +++L LP FL + D +LT +FL + A RE + ++
Sbjct: 181 YRDRLLPLPLFLLGGQDERDPAEWLKGLRLTGHFLERDAFGARHRAVPPARERLVSRI 238
>gi|307294438|ref|ZP_07574282.1| DNA repair protein RecO [Sphingobium chlorophenolicum L-1]
gi|306880589|gb|EFN11806.1| DNA repair protein RecO [Sphingobium chlorophenolicum L-1]
Length = 244
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 4/239 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
A++ +R +GE I ++T +G G+VR G+S RM+P+L N V+ +R+R +
Sbjct: 6 TPALVCALRPHGEHGAIARLLTPDHGLLAGYVRGGRSRRMRPVLLPANAVKAEFRARTEE 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL---NCH 121
L E+ S L + LPE P LY L+ L
Sbjct: 66 QLAGLTVELDHSRAPLLAEPLPAAAIDWACALTAVALPEGTPYPALYQALDGVLGAVEAA 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
++ EL++L +GFGLDLT+C TG DL ++SP+S AV R+ Y +
Sbjct: 126 PAARGWAAALIRYELLMLAELGFGLDLTRCAATGGRDDLAYISPRSAAAVSRAGAAGYED 185
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
++L LP+FL + D ++ +LT +FL + L + RE + +L ++
Sbjct: 186 RLLPLPAFLLEGG-AGDWPAILDGLRLTGFFLERSVLTDWRVDVLAARERLVDRLKRVV 243
>gi|329115619|ref|ZP_08244341.1| DNA repair protein RecO [Acetobacter pomorum DM001]
gi|326695047|gb|EGE46766.1| DNA repair protein RecO [Acetobacter pomorum DM001]
Length = 263
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 6/240 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ A++L GE + + V+T YG G G S + + Q GN+V+ ++ R A
Sbjct: 12 EAPALVLFAGVQGETSARIHVLTEDYGPLRGIAYGGASKAGRALWQPGNVVKTSFHKRSA 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNCHK 122
+ E+L + A+LL + L L +QS+ L +PC L+ L
Sbjct: 72 AAPLQISGELLYACAARLLDAPLALGMVQSVCVLADVTLPEADPCPFLFAETVRLLTFLG 131
Query: 123 IPSVI-----GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
V+ V+ E+ LL +GFGLDL+ C VTG T++L +VSP++G AV
Sbjct: 132 YDPVVAEREGMPHVVRWEMALLVTLGFGLDLSACAVTGSTENLHYVSPRTGRAVSEEGAG 191
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ +++L LPSFL EQT A + +LT +FL + A + R+ +L
Sbjct: 192 EWKDRLLPLPSFLRDTEQTGHAADWLAGLRLTGHFLARDAFGQRHLPLPAARQRLYDRLE 251
>gi|319898694|ref|YP_004158787.1| DNA repair protein RecO [Bartonella clarridgeiae 73]
gi|319402658|emb|CBI76204.1| DNA repair protein RecO [Bartonella clarridgeiae 73]
Length = 231
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 1/220 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ AIILG R +GE ++ILE+MTRQ GR++G V+ G+S RM +LQ GN V W +
Sbjct: 1 MKWKEQAIILGTRQHGETSVILEIMTRQRGRYMGIVKGGRSRRMAFLLQPGNFVEAEWWA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG FR E L+ H ++L+ LY Q + R LPER+P LYDML F+
Sbjct: 61 RLDEHLGLFRLEALDLHASRLIVLPEALYSFQLMASHLRLLPERDPHPVLYDMLYFFMQN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P + ++ V+ EL+LL+ +GFGLDL+ C VTG + L +VSPKSG AVC VG P+
Sbjct: 121 FDDPFINAELLVRFELLLLEELGFGLDLSCCAVTGRQEKLCYVSPKSGRAVCEEVGRPWK 180
Query: 181 EKMLVLPSFLWKEEQ-TIDADSLKSAFQLTDYFLNKYALQ 219
+K+L LP FL ++ +D + +K LTD+F N L+
Sbjct: 181 DKLLFLPQFLARKTICPVDFNDIKKGLILTDFFFNTLCLE 220
>gi|310815097|ref|YP_003963061.1| DNA repair protein RecO [Ketogulonicigenium vulgare Y25]
gi|308753832|gb|ADO41761.1| DNA repair protein RecO [Ketogulonicigenium vulgare Y25]
Length = 241
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 6/222 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M WQD+ I+L +GE +I +V T++ G+ G VR G RMQP+L GN + + WR
Sbjct: 1 MIDWQDEGILLTTHRHGEAGVIAQVFTQERGKISGLVRGGAGSRMQPVLIPGNQLSLRWR 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFL 118
+RL +LG + E++ S L+ L L ++ L P Y L
Sbjct: 61 ARLDDHLGSLQPELIRSRAGFLMQDRLSLAAGAAVTALLAATMPERVPHTAFYAQSTALL 120
Query: 119 NC---HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ S+ ++Q E++LL+ GFGLDLT C VTG DL +VSPKSG AV +S
Sbjct: 121 DLVGVEDWQSLWPLAYLQWEMVLLREGGFGLDLTTCAVTGAADDLCYVSPKSGRAVSKSG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+AE++L LP+ + E D + A T++FL
Sbjct: 181 AGAWAERLLPLPAVMRGEGDA-DTSDILQALATTEWFLLHRL 221
>gi|157825871|ref|YP_001493591.1| DNA repair protein RecO [Rickettsia akari str. Hartford]
gi|254764658|sp|A8GNV8|RECO_RICAH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157799829|gb|ABV75083.1| DNA repair protein RecO [Rickettsia akari str. Hartford]
Length = 237
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN+V W++
Sbjct: 1 MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVK-ESSKKSKFIYQEGNIVDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ L+ + LY SI+ L + L + +
Sbjct: 60 RLHEHIGIAKCELIKSYTGYLIINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC VT VT DL +VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLTYVSPKSARALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL ++ I + + A LT+YF N+Y +N R+ F+G +L
Sbjct: 180 DKLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNN--RQPEARQTFVGYILN 235
>gi|157964679|ref|YP_001499503.1| DNA repair protein RecO [Rickettsia massiliae MTU5]
gi|157844455|gb|ABV84956.1| DNA repair protein RecO [Rickettsia massiliae MTU5]
Length = 274
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + Q GN+V W++
Sbjct: 38 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-EFSRKSKFTYQEGNIVDFLWQA 96
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LG + E+++S+ +++ LY S++ L + L + I
Sbjct: 97 RLHEHLGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFCSFLINYLD 156
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL++VSPKS A+ VG PY
Sbjct: 157 NLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYEVGKPYK 216
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ L
Sbjct: 217 DKLLMLPRFLLSDNIEITLEEKRQALALTNYFFNRYLFHNN--RQVEARQTFIEYTLN 272
>gi|157803626|ref|YP_001492175.1| DNA repair protein RecO [Rickettsia canadensis str. McKiel]
gi|254790734|sp|A8EYF7|RECO_RICCK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157784889|gb|ABV73390.1| DNA repair protein RecO [Rickettsia canadensis str. McKiel]
Length = 241
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 3/237 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ YG + G V+ S + + I Q GN+V W +
Sbjct: 1 MNIKDIGVIVAKKPLKENTFIITVFTKNYGLYSGVVK-ASSKKSKFIYQEGNIVDFLWMA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ +++ LY SI+ L + L + I
Sbjct: 60 RLHEHIGIAKCELIKSYTGYFITNKTKLYAFNSIISLIKELLHEREEYSNFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + ++ EL LL G+ LDL+KC V+ V QDL +VSPKSG A+ VG PY
Sbjct: 120 NLSKKFFFRDYINFELALLDIAGYKLDLSKCAVSNVKQDLYYVSPKSGRALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ +L
Sbjct: 180 DKLLILPKFLLSDNSKITLEEKRQALTLTNYFFNRYLFHNN--RHAEARQAFMEYIL 234
>gi|91205107|ref|YP_537462.1| DNA repair protein RecO [Rickettsia bellii RML369-C]
gi|157827560|ref|YP_001496624.1| DNA repair protein RecO [Rickettsia bellii OSU 85-389]
gi|122425954|sp|Q1RJU1|RECO_RICBR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790733|sp|A8GXI7|RECO_RICB8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|91068651|gb|ABE04373.1| DNA repair protein RecO [Rickettsia bellii RML369-C]
gi|157802864|gb|ABV79587.1| DNA repair protein RecO [Rickettsia bellii OSU 85-389]
Length = 241
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G + S + + I Q GN+V W++
Sbjct: 1 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVAK-ESSKKSKFIYQEGNVVDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ + + LY S++ L + L + L I
Sbjct: 60 RLHEHIGIAKCELVKSYIGHFIINKAKLYAFNSVISLIKELFHEREEHYNFFSLLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + ++ EL LL +G+ LD TKC V+ TQDL ++SPKSG AV VG PY
Sbjct: 120 NLAKNFCFHDYINFELALLAEMGYELDFTKCGVSNTTQDLAYLSPKSGRAVSYEVGAPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L LP FL I + + A LT YF N+Y + +R+ F+ +LE
Sbjct: 180 DKLLPLPKFLLSGNDKITLEEKRQALNLTSYFFNRYLF--HNHRQPEIRQVFVEYILE 235
>gi|51473730|ref|YP_067487.1| DNA repair protein RecO [Rickettsia typhi str. Wilmington]
gi|81610783|sp|Q68WI7|RECO_RICTY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|51460042|gb|AAU04005.1| possible RecO-like recombinational DNA repair protein [Rickettsia
typhi str. Wilmington]
Length = 236
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 3/239 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G ++ S + + I Q GN+V W++
Sbjct: 1 MNIKDIGVIISKKPLKENTFIIRVFTKNHGLYSGVIK-ASSKKNKFIYQEGNIVDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ + + LY S+ L + L ++ I
Sbjct: 60 RLHEHIGIAKCELIKSYTGYFIINKAKLYAFNSVKFLIQELFHEREEHSIFFAFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ +DLTKC V+ VT DL +VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELNLLAETGYKIDLTKCCVSHVTTDLTYVSPKSARALSYKVGKPYR 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L+LP FL E+ I + K A LT+YF N+Y +N R+ F+ + +
Sbjct: 180 DKLLILPKFLLSEDSKITLEEKKQALTLTNYFFNRYLFHNN--RQVEARKEFIEYITNI 236
>gi|157828681|ref|YP_001494923.1| DNA repair protein RecO [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933400|ref|YP_001650189.1| DNA repair protein RecO [Rickettsia rickettsii str. Iowa]
gi|254790735|sp|B0BY57|RECO_RICRO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790736|sp|A8GSP0|RECO_RICRS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157801162|gb|ABV76415.1| DNA repair protein RecO [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908487|gb|ABY72783.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
Length = 237
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN++ W++
Sbjct: 1 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-EFSKKSKFIYQEGNIIDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ +++ LY S++ L + L + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFITNKTKLYAFNSVISLIKELFHEREEHSKFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + ++ EL LL G+ LDLTKC V+ VT DL++VSPKS A+ VG PY
Sbjct: 120 NLSKHFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ L
Sbjct: 180 DKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNN--RQVEARQTFIEYTLN 235
>gi|15892735|ref|NP_360449.1| DNA repair protein RecO [Rickettsia conorii str. Malish 7]
gi|34581542|ref|ZP_00143022.1| hypothetical protein [Rickettsia sibirica 246]
gi|81595557|sp|Q92HF9|RECO_RICCN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|15619911|gb|AAL03350.1| unknown [Rickettsia conorii str. Malish 7]
gi|28262927|gb|EAA26431.1| unknown [Rickettsia sibirica 246]
Length = 237
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN++ W++
Sbjct: 1 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-EFSKKSKFIYQEGNIIDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ +++ LY S++ L + L + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL++VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ L
Sbjct: 180 DKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNN--RQVEARQTFIEYTLN 235
>gi|239947680|ref|ZP_04699433.1| DNA repair protein RecO [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921956|gb|EER21980.1| DNA repair protein RecO [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 234
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 3/237 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN+V W++
Sbjct: 1 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-ESSKKSKFIYQEGNIVDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ + + LY S++ L + L + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFIINKAKLYAFNSVISLIKELFHEREEHSNFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL +VSPKSG A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELALLAETGYKLDLTKCDVSHVTTDLTYVSPKSGRALSYKVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+K+L+LP FL E I + K A LT+YF N+Y +N R+ F+ +L
Sbjct: 180 DKLLILPRFLLSENSEITLEEKKQAITLTNYFFNRYLFHNN--RQAEARQAFMEYIL 234
>gi|148284965|ref|YP_001249055.1| DNA repair protein RecO [Orientia tsutsugamushi str. Boryong]
gi|254764648|sp|A5CF17|RECO_ORITB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146740404|emb|CAM80867.1| DNA repair protein [Orientia tsutsugamushi str. Boryong]
Length = 241
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 4/239 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++D AIIL R+ E I+ V+T+ YG + G +++ S + I Q GN+V W +
Sbjct: 1 MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
RL ++LG E+++S+ ++S+ Y I ERE L++ L
Sbjct: 61 RLDKHLGTINCELVKSYSYLIMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ ++ K ++ EL++LK G+ L L +C VT TQ+L++VSPKSG A+ +VG PY
Sbjct: 121 SINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQNLIYVSPKSGQAISAAVGEPY 180
Query: 180 AEKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
K+L+LP FL + D +++AF LT YF NKY L + RE L +L
Sbjct: 181 KHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLI--KKKLPIARELLLKSIL 237
>gi|15604714|ref|NP_220921.1| DNA repair protein RecO [Rickettsia prowazekii str. Madrid E]
gi|292572163|gb|ADE30078.1| DNA repair protein RecO [Rickettsia prowazekii Rp22]
Length = 236
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 3/239 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G ++ S + + I Q GN+V W++
Sbjct: 1 MNIKDIGVIISKKPLKENTFIIRVFTKNHGLYSGVIK-ESSKKNKFIYQEGNIVDFLWKA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ + + LY S++ L + L ++ I
Sbjct: 60 RLHEHIGIAKCELIKSYTGYFIINKAKLYAFNSVISLIQELFHEREEHSIFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL +VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYISFELNLLAETGYKLDLTKCCVSHVTTDLTYVSPKSARALSYKVGKPYR 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
+K+L+LP FL ++ I + K A LT+YF N+Y +N RE F+ + +
Sbjct: 180 DKLLILPKFLLAKDSEITLEEKKQALTLTNYFFNRYLFHNN--RQVKAREEFIEYITNI 236
>gi|189184083|ref|YP_001937868.1| DNA repair protein RecO [Orientia tsutsugamushi str. Ikeda]
gi|254764649|sp|B3CTD7|RECO_ORITI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189180854|dbj|BAG40634.1| DNA repair protein RecO [Orientia tsutsugamushi str. Ikeda]
Length = 241
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 4/240 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++D AIIL R+ E I+ V+T+ YG + G +++ S + I Q GN+V W +
Sbjct: 1 MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
RL ++LG E+++S+ ++S+ LY I ERE L++ L
Sbjct: 61 RLDEHLGTINCELVKSYSYLIMSNKRNLLYTHSLIELTLMSFKERELHANLFEKWLENLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ K ++ EL++LK G+ L+L +C VT TQ+L++VSPKSG A+ +VG PY
Sbjct: 121 SINTGNINVKNYINFELLILKEAGYRLNLDRCGVTNCTQNLIYVSPKSGQAISATVGEPY 180
Query: 180 AEKMLVLPSFLWKEE-QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
K+L+LP FL + D +++AF LT YF NKY L + RE L +LE
Sbjct: 181 KHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYILI--KKKLPITRELLLKSILE 238
>gi|238650314|ref|YP_002916166.1| DNA repair protein RecO [Rickettsia peacockii str. Rustic]
gi|259563684|sp|C4K0L7|RECO_RICPU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238624412|gb|ACR47118.1| DNA repair protein RecO [Rickettsia peacockii str. Rustic]
Length = 237
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN++ W++
Sbjct: 1 MNIKDIGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-EFSKKSKFIYQEGNIIDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ +++ LY S++ L + L + + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFFLFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL++VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ L
Sbjct: 180 DKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNN--RQVEARQTFIEYTLN 235
>gi|67459260|ref|YP_246884.1| DNA repair protein RecO [Rickettsia felis URRWXCal2]
gi|75536308|sp|Q4UL54|RECO_RICFE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67004793|gb|AAY61719.1| DNA repair protein RecO [Rickettsia felis URRWXCal2]
Length = 237
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G V+ S + + I Q GN+V W++
Sbjct: 1 MNIKDVGVIIAKKPLKENTFIITVFTKNHGLYSGVVK-ESSKKSKFIYQEGNIVDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ + + LY S++ L + L + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFIINKAKLYAFNSVISLIKELFHEREEHSNFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC VT VT DL +VSPKS A+ VG PY
Sbjct: 120 NLSKNFCFRDYINFELALLAETGYKLDLTKCGVTHVTTDLNYVSPKSARALSYEVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL ++ I + + A LT+YF N+Y +N R+ F+ +L
Sbjct: 180 DKLLILPKFLLSDDSEITLEEKRQASTLTNYFFNRYLFHNN--RQAEARQIFMEYILN 235
>gi|301154943|emb|CBW14406.1| gap repair protein [Haemophilus parainfluenzae T3T1]
Length = 234
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 12/240 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M Q +L R Y E ++++++ T + GR + ++ R + +LQ + + W
Sbjct: 1 MDLQ-RGFVLHRRPYSETSLLVDLFTEETGRLTVIAKGARAKRSAWKSVLQPFTPLLLRW 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ A + L + G + R + +L+ L
Sbjct: 60 SGKGALKTLTKAEPAAITLP---LQQTALYSGFYVNELITRVIEPETANPQLFQHYLQCL 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E LLK +G+G+D C +G+ D + +
Sbjct: 117 TGLATQPQVEPTLRLFEFHLLKILGYGIDFLHCAGSGLPVDESMTYQYRAEKGFIASLVK 176
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ + D L++A + T + AL+ + RE F +L
Sbjct: 177 DNLTFYGRDLLAFDRLEFTDEAVLQAAKRFT-----RIALKPYLGDKPLKSRELFTQNVL 231
>gi|325577292|ref|ZP_08147776.1| recombination protein O [Haemophilus parainfluenzae ATCC 33392]
gi|325160874|gb|EGC72995.1| recombination protein O [Haemophilus parainfluenzae ATCC 33392]
Length = 234
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 12/240 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M Q +L R Y E ++++++ T + GR + ++ R + +LQ + + W
Sbjct: 1 MDLQ-RGFVLHRRPYSETSLLVDLFTEETGRLTVIAKGARAKRSAWKSVLQPFTPLLLRW 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ A + L + G + R + +L+ L
Sbjct: 60 SGKGALKTLTKAEPAAITLP---LQQTALYSGFYVNELITRVIEPETANPQLFQHYLQCL 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E LLK +G+G+D C +G+ D + +
Sbjct: 117 TGLATQPQVEPTLRLFEFHLLKILGYGIDFLHCAGSGLPVDESMTYQYRAEKGFIASLVK 176
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ + D L +A + T + AL+ + RE F +L
Sbjct: 177 DNLTFYGRDLLAFDRLEFTDESVLLAAKRFT-----RIALKPYLGDKPLKSRELFTQNVL 231
>gi|229586870|ref|YP_002845371.1| DNA repair protein RecO [Rickettsia africae ESF-5]
gi|259563683|sp|C3PNW8|RECO_RICAE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|228021920|gb|ACP53628.1| DNA repair protein RecO [Rickettsia africae ESF-5]
Length = 237
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 3/238 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ ++ E I+ V T+ +G + G V+ S + + I Q GN++ W++
Sbjct: 1 MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVK-EFSKKSKFIYQEGNIIDFLWQA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL +++G + E+++S+ +++ LY S++ L + L + I
Sbjct: 60 RLHEHIGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLD 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + ++ EL LL G+ LDLTKC V+ VT DL++VSPKS A+ +VG PY
Sbjct: 120 NLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYAVGKPYK 179
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
+K+L+LP FL + I + + A LT+YF N+Y +N R+ F+ L
Sbjct: 180 DKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNN--RQVEARQTFIEYTLN 235
>gi|218670194|ref|ZP_03519865.1| DNA repair protein RecO [Rhizobium etli GR56]
Length = 190
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 86/181 (47%), Positives = 119/181 (65%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWQDHAIILGVKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+L+ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
P+ G++FV+ EL +L ++GFGLDL +C TG DL +VSPKS P+
Sbjct: 121 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATGDRSDLAYVSPKSRPRRQPQRRAPWR 180
Query: 181 E 181
Sbjct: 181 T 181
>gi|68171672|ref|ZP_00545033.1| recO-related protein [Ehrlichia chaffeensis str. Sapulpa]
gi|88658325|ref|YP_507349.1| DNA repair protein RecO [Ehrlichia chaffeensis str. Arkansas]
gi|123493398|sp|Q2GGT4|RECO_EHRCR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67998907|gb|EAM85598.1| recO-related protein [Ehrlichia chaffeensis str. Sapulpa]
gi|88599782|gb|ABD45251.1| putative DNA repair protein RecO [Ehrlichia chaffeensis str.
Arkansas]
Length = 244
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD I++ +R YG+ II+ + T+++G G + S + LQ G+ V V W S
Sbjct: 1 MRWQDQGIVIAIRKYGDDQIIISIFTQKHGLKKGLAKY--SKKATHRLQIGDYVNVTWSS 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL NLG F++E+++S + +L + + + +
Sbjct: 59 RLISNLGCFKYELIKSTLYHYIQDNLKTMCIAFSTVILDQVLPENEENYIIYNCLDIFIN 118
Query: 121 HKIPSVIGKIFVQ--IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I +EL LL +GFGLDL++C V ++L ++SPK+G AV ++VGLP
Sbjct: 119 SIQFQDINWKIKYLRLELTLLSELGFGLDLSRCAVNNTNENLTFISPKTGKAVSKTVGLP 178
Query: 179 YAEKMLVLPSFLWKEEQT----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
Y++ +L LP L+ K + + YF K+ L RE +
Sbjct: 179 YSKSLLPLPQLLYDVYNNYEYKYSKTDFKLSLNVLGYFFKKHFLTEKNTILIKYREEIIK 238
Query: 235 KL 236
+
Sbjct: 239 LI 240
>gi|262273708|ref|ZP_06051521.1| DNA recombination and repair protein RecO [Grimontia hollisae CIP
101886]
gi|262222123|gb|EEY73435.1| DNA recombination and repair protein RecO [Grimontia hollisae CIP
101886]
Length = 237
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 77/242 (31%), Gaps = 12/242 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + +GR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSENHGRVSLMAKGARGKRSPLKGALQPFTPLLMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R A LS + G L R + +L+ L
Sbjct: 61 SGRGE---MHTLRHAEAMGLAIPLSGNALFSGFYLNEILSRVVEPETAYHQLFYDYVTAL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G D + +
Sbjct: 118 TELAQHRNPEPALRRFELALLDSLGYGVDFLHCAGSGEPVDETMTYIFREQQGFVASLMK 177
Query: 179 YAEKMLVLPSF-LWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
M Q A+ LK+A + T + AL+ + RE FL +
Sbjct: 178 SNTLMFTGSDLKALATRQFSTAEQLKAAKRFT-----RLALKPYLGPKPLKSRELFLLRT 232
Query: 237 LE 238
+
Sbjct: 233 RK 234
>gi|229846418|ref|ZP_04466526.1| DNA repair protein RecO [Haemophilus influenzae 7P49H1]
gi|229810511|gb|EEP46229.1| DNA repair protein RecO [Haemophilus influenzae 7P49H1]
gi|309972510|gb|ADO95711.1| DNA repair protein RecO [Haemophilus influenzae R2846]
Length = 236
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFVASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|148825386|ref|YP_001290139.1| DNA repair protein RecO [Haemophilus influenzae PittEE]
gi|166221893|sp|A5UAF5|RECO_HAEIE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148715546|gb|ABQ97756.1| DNA repair protein RecO [Haemophilus influenzae PittEE]
Length = 236
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQITLYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFVASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|260913269|ref|ZP_05919751.1| recombination protein O [Pasteurella dagmatis ATCC 43325]
gi|260632856|gb|EEX51025.1| recombination protein O [Pasteurella dagmatis ATCC 43325]
Length = 237
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 80/240 (33%), Gaps = 13/240 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L ++Y E ++++++ T + GR + ++ R + +LQ + + W
Sbjct: 4 NWQ-RGFVLHRKAYSETSLLVDLFTEESGRLTVIAKGARAKRSSLKSVLQPFTPLLLRWT 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + A L + G L R L +L+ L
Sbjct: 63 GKGELKTLTKAEP---AAIALPLQHTALYSGFYVNELLSRVLEPETAYPQLFQNYLRCLT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E LL +G+G+D C +G D + +
Sbjct: 120 GLASNTQQVEPYLRHFEFELLHTLGYGVDFCHCAGSGKIVDENMTYRYREEKGFIASLIK 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ + D +L++A + T + AL+ + + RE F +L
Sbjct: 180 DNLTFYGRDLLAFEAREFHDPATLQAAKRFT-----RMALKPYLGNKPLKSRELFTQYVL 234
>gi|68248937|ref|YP_248049.1| DNA repair protein RecO [Haemophilus influenzae 86-028NP]
gi|81336652|sp|Q4QNK8|RECO_HAEI8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|68057136|gb|AAX87389.1| DNA repair protein RecO [Haemophilus influenzae 86-028NP]
Length = 236
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQMLGYGVDFLHCAGSGEPVDFSMTYRYREEKGFVASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|145628684|ref|ZP_01784484.1| DNA repair protein RecO [Haemophilus influenzae 22.1-21]
gi|145638757|ref|ZP_01794366.1| DNA repair protein RecO [Haemophilus influenzae PittII]
gi|144979154|gb|EDJ88840.1| DNA repair protein RecO [Haemophilus influenzae 22.1-21]
gi|145272352|gb|EDK12260.1| DNA repair protein RecO [Haemophilus influenzae PittII]
gi|309750247|gb|ADO80231.1| DNA repair protein RecO [Haemophilus influenzae R2866]
Length = 236
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARTKRSPWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIEPETPNPALFQYYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDNLSF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDNAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|145634671|ref|ZP_01790380.1| DNA repair protein RecO [Haemophilus influenzae PittAA]
gi|229844576|ref|ZP_04464716.1| DNA repair protein RecO [Haemophilus influenzae 6P18H1]
gi|145268216|gb|EDK08211.1| DNA repair protein RecO [Haemophilus influenzae PittAA]
gi|229812825|gb|EEP48514.1| DNA repair protein RecO [Haemophilus influenzae 6P18H1]
Length = 236
Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGKPVDFSMTYRYREEKGFVASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|145640278|ref|ZP_01795862.1| DNA repair protein RecO [Haemophilus influenzae R3021]
gi|145274864|gb|EDK14726.1| DNA repair protein RecO [Haemophilus influenzae 22.4-21]
Length = 236
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARTKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDCTMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|28899344|ref|NP_798949.1| DNA repair protein RecO [Vibrio parahaemolyticus RIMD 2210633]
gi|260365943|ref|ZP_05778433.1| DNA repair protein RecO [Vibrio parahaemolyticus K5030]
gi|260878965|ref|ZP_05891320.1| DNA repair protein RecO [Vibrio parahaemolyticus AN-5034]
gi|260898318|ref|ZP_05906814.1| DNA repair protein RecO [Vibrio parahaemolyticus Peru-466]
gi|260899639|ref|ZP_05908034.1| DNA repair protein RecO [Vibrio parahaemolyticus AQ4037]
gi|31340321|sp|Q87LP1|RECO_VIBPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|28807580|dbj|BAC60833.1| DNA repair protein RecO [Vibrio parahaemolyticus RIMD 2210633]
gi|308085237|gb|EFO34932.1| DNA repair protein RecO [Vibrio parahaemolyticus Peru-466]
gi|308090490|gb|EFO40185.1| DNA repair protein RecO [Vibrio parahaemolyticus AN-5034]
gi|308110552|gb|EFO48092.1| DNA repair protein RecO [Vibrio parahaemolyticus AQ4037]
gi|308113207|gb|EFO50747.1| DNA repair protein RecO [Vibrio parahaemolyticus K5030]
gi|328474123|gb|EGF44928.1| DNA repair protein RecO [Vibrio parahaemolyticus 10329]
Length = 243
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRITLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L + + R L P L+ L
Sbjct: 71 -MKTLRQAEPISLGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQCE 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG D + L
Sbjct: 130 NPEPALRRFELALLSSMGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + + LK+A + T + AL+ + RE F+
Sbjct: 190 NELIAISERRFVTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFI 233
>gi|323491196|ref|ZP_08096382.1| DNA repair protein RecO [Vibrio brasiliensis LMG 20546]
gi|323314564|gb|EGA67642.1| DNA repair protein RecO [Vibrio brasiliensis LMG 20546]
Length = 243
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 11/231 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 10 FVLHRRPYSESSLILDVFSEEYGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNGS-- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L P L+ L
Sbjct: 68 -MKTLRQAEPISLGLPLSGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQCD 126
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL +L +G+G+D C TG + +
Sbjct: 127 NPEPALRRFELAMLSAMGYGVDFMHCAGTGEPVEPNMTYRYREQKGFIASVRKDNLTFYG 186
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
E + + LK+A + T + AL+ + RE F+ +
Sbjct: 187 SELIAISERRFTTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFISR 232
>gi|16272284|ref|NP_438496.1| DNA repair protein RecO [Haemophilus influenzae Rd KW20]
gi|145631422|ref|ZP_01787192.1| DNA repair protein RecO [Haemophilus influenzae R3021]
gi|260581202|ref|ZP_05849021.1| DNA repair protein RecO [Haemophilus influenzae RdAW]
gi|260582574|ref|ZP_05850364.1| DNA repair protein RecO [Haemophilus influenzae NT127]
gi|1172897|sp|P44642|RECO_HAEIN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|1573301|gb|AAC21994.1| DNA repair protein (recO) [Haemophilus influenzae Rd KW20]
gi|144982959|gb|EDJ90468.1| DNA repair protein RecO [Haemophilus influenzae R3021]
gi|260092127|gb|EEW76071.1| DNA repair protein RecO [Haemophilus influenzae RdAW]
gi|260094385|gb|EEW78283.1| DNA repair protein RecO [Haemophilus influenzae NT127]
gi|301169037|emb|CBW28634.1| gap repair protein [Haemophilus influenzae 10810]
Length = 236
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|149192069|ref|ZP_01870294.1| DNA repair protein RecO [Vibrio shilonii AK1]
gi|148834094|gb|EDL51106.1| DNA repair protein RecO [Vibrio shilonii AK1]
Length = 234
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 11/235 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 8 FVLHRRPYSESSLILDVFSEEYGRVTLLSKGARSKRSNLKGALQPFTPLLLKWSGGGS-- 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L P L+ L +
Sbjct: 66 -MKTLRQAEAISLGLPLSGINLYSAMYVNELIARVLASEIPFPALFHDYLQALTELAHNT 124
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + + L
Sbjct: 125 NPEPALRRFELALLSAMGYGVDFLHCAGTGEPIEPTMTYRYREQKGFIASVRKDNLTFLG 184
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLEL 239
E + L++A + T + AL+ + RE FL +L +L
Sbjct: 185 EELIAISERRFNSKTQLQAAKRFT-----RIALKPYLGGKPLKSRELFLPRLKQL 234
>gi|145636400|ref|ZP_01792069.1| DNA repair protein RecO [Haemophilus influenzae PittHH]
gi|145270565|gb|EDK10499.1| DNA repair protein RecO [Haemophilus influenzae PittHH]
Length = 236
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFLASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|163802960|ref|ZP_02196847.1| DNA repair protein RecO [Vibrio sp. AND4]
gi|159173250|gb|EDP58078.1| DNA repair protein RecO [Vibrio sp. AND4]
Length = 243
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARSKRSNLKGALQPFTPLLLKWSGKSS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L + + R L P L+ L
Sbjct: 71 -MKTLRQAEAISLGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQND 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG D + L
Sbjct: 130 NPEPALRRFELALLSSLGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + + LK+A + T + AL+ + RE F+
Sbjct: 190 NELIAISERRFVTKEQLKAAKRFT-----RVALKPYLGGKPLKSRELFI 233
>gi|148827479|ref|YP_001292232.1| DNA repair protein RecO [Haemophilus influenzae PittGG]
gi|166221894|sp|A5UGE3|RECO_HAEIG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148718721|gb|ABQ99848.1| DNA repair protein RecO [Haemophilus influenzae PittGG]
Length = 236
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKST 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLAKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|152977879|ref|YP_001343508.1| DNA repair protein RecO [Actinobacillus succinogenes 130Z]
gi|171472920|sp|A6VKS6|RECO_ACTSZ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|150839602|gb|ABR73573.1| DNA repair protein RecO [Actinobacillus succinogenes 130Z]
Length = 237
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 78/242 (32%), Gaps = 13/242 (5%)
Query: 1 MYWQD--DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRV 56
M + +L + Y E ++++++ T + GR + ++ R + +LQ + +
Sbjct: 1 MAIETFQRGFVLHRKPYSETSLLVDLFTEETGRLTVLAKGARAKRSAWKGVLQPFTPLLL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
W + A + A L + G L R + P EL+
Sbjct: 61 RWSGKGALKTLTKAEP---AAIALPLQQTALFSGFYVNELLCRVIEAETPNGELFQDYLH 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + E LL +G+G+D T C +G D +
Sbjct: 118 CLTRLASEDGVEPALRTFEFQLLTMLGYGVDFTHCAGSGEPVDEAMTYRYREEKGFTASL 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ ++ D +A + T + AL+ + + RE F
Sbjct: 178 IKDNATFYGRDLLAFEARDFRDPAVRSAAKRFT-----RMALKPYLGNKPLKSRELFAHN 232
Query: 236 LL 237
+L
Sbjct: 233 IL 234
>gi|145632581|ref|ZP_01788315.1| DNA repair protein RecO [Haemophilus influenzae 3655]
gi|144986776|gb|EDJ93328.1| DNA repair protein RecO [Haemophilus influenzae 3655]
Length = 236
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W + A
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSA 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
S + E LL+ +G+G+D C +G D + +
Sbjct: 124 ESNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDCTMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFTQNIL 233
>gi|260771273|ref|ZP_05880200.1| DNA recombination and repair protein RecO [Vibrio furnissii CIP
102972]
gi|260613870|gb|EEX39062.1| DNA recombination and repair protein RecO [Vibrio furnissii CIP
102972]
gi|315179120|gb|ADT86034.1| DNA repair protein RecO [Vibrio furnissii NCTC 11218]
Length = 241
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 74/228 (32%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 9 FVLHRRPYSETSLILDVFSEEYGRLTLLAKGARSKRSNLKGALQPFTPLLLKWSGNSS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L P L+ L
Sbjct: 67 -MKTLRQAEAISLGLPLTGIHLYSAMYVNELVGRVLAPEVPSPGLFHDYLFALTELAQSD 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG D + L
Sbjct: 126 NPEPPLRRFELALLSSLGYGVDFLHCAGTGEPVDPAMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTTKEQLQAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|58418862|gb|AAW70877.1| Recombinational DNA repair protein RecO [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 245
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+K++IL + + +G+ G R + Q NL+ W +
Sbjct: 6 MRWKDEGIIIAAKKYGDKSLILSLFMKNHGKCRGLTRLTNDSSYK--FQVSNLLHAEWSA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG F+ E++ES SL + S + + LPE EPC LYD F++
Sbjct: 64 KLPENLGFFKCELIESPFHHFFQDSLKSITIVSFSSILEKVLPESEPCAVLYDNFQYFID 123
Query: 120 CHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 124 VIKHGSEPWQGHYLNLELLLLAQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDY 183
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + R L
Sbjct: 184 YADKLLPFPQMLHDVYNNNLQNSYSYQEFQLGLKVTGYFLNKYLFSQLNMRFPESRNLIL 243
Query: 234 GK 235
Sbjct: 244 SL 245
>gi|330814140|ref|YP_004358379.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063]
gi|327487235|gb|AEA81640.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063]
Length = 228
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 12/238 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D +L + +Y E + I +T ++G H G + S + + LQ GN +NW+S
Sbjct: 1 MNWKDIGYLLKISNYSENSSIATFVTCEHGLHKGVIYGATSKKKKNYLQIGNKFSLNWKS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ LG + E+ + AK + L +QS+ L F
Sbjct: 61 KSEDALGYYDLELKNAVTAKFFDEPIKLSFIQSLSELCCKTLAERYDYSELFDYTDFFIN 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + K+++ E LL IGF L + + L
Sbjct: 121 NISKANALKLYILWEKELLTAIGFEL------------NPDNKNFNFYKNNLSQWILEID 168
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
++ + P+FL + L + + L ++ + N I +RE KL E
Sbjct: 169 KQKFLYPNFLIDSNSVYEDTDLYEGLVINKFILKRFVFEPNRIRFPEVRERIEKKLNE 226
>gi|161899045|ref|YP_198119.2| DNA repair protein RecO [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 240
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+K++IL + + +G+ G R + Q NL+ W +
Sbjct: 1 MRWKDEGIIIAAKKYGDKSLILSLFMKNHGKCRGLTRLTNDSSYK--FQVSNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG F+ E++ES SL + S + + LPE EPC LYD F++
Sbjct: 59 KLPENLGFFKCELIESPFHHFFQDSLKSITIVSFSSILEKVLPESEPCAVLYDNFQYFID 118
Query: 120 CHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 119 VIKHGSEPWQGHYLNLELLLLAQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDY 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + R L
Sbjct: 179 YADKLLPFPQMLHDVYNNNLQNSYSYQEFQLGLKVTGYFLNKYLFSQLNMRFPESRNLIL 238
Query: 234 GK 235
Sbjct: 239 SL 240
>gi|88607051|ref|YP_505316.1| DNA repair protein RecO [Anaplasma phagocytophilum HZ]
gi|123494993|sp|Q2GJY5|RECO_ANAPZ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|88598114|gb|ABD43584.1| DNA repair protein RecO [Anaplasma phagocytophilum HZ]
Length = 245
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 11/245 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD +I+ + YG+ IL V TR +G +R + + LQ G+ V V WR+
Sbjct: 1 MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQS---LQIGDRVCVTWRA 57
Query: 61 RLAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFL 118
RLA NLG F + S L L S+ + +P + LYD L F
Sbjct: 58 RLANNLGYFNSCEIISSAFYAYFQDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFA 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ ++++EL +L +GF LDL++C V +LL++SPK+G A+ G+
Sbjct: 118 EAAECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLLYISPKTGRAISERAGVS 177
Query: 179 YAEKMLVLPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
Y + LP L + Q+ YFL+++ L R+
Sbjct: 178 YRHLLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSD-DSKFLEQRKEMT 236
Query: 234 GKLLE 238
+ E
Sbjct: 237 ALIYE 241
>gi|261491681|ref|ZP_05988262.1| DNA recombination protein RecO [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494444|ref|ZP_05990930.1| DNA recombination protein RecO [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309828|gb|EEY11045.1| DNA recombination protein RecO [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312634|gb|EEY13756.1| DNA recombination protein RecO [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 240
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 12/238 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ A +L R Y E ++++E T +GR + + R + +LQ + V W
Sbjct: 5 QWQ-RAFVLHRREYSESSLLVEFFTEHHGRITLLAKGARRARSPLKAVLQPFTPLLVRWS 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + ++ G L R L + EL+ +
Sbjct: 64 GKGDLKTLTKAEP---AALTLPMETAALYSGFYINEVLARVLENQTAYPELFQHYLRCMT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I I E LK +G+G+D T C TG+ D + L
Sbjct: 121 ELATQHQIEPILRTFEFHTLKALGYGVDFTHCTATGLPIDPKMSYQFRESEGFIASLLQN 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
L + + + + ++A + T + AL+ + RE F L
Sbjct: 181 NNSFLGCDLLAFAQLDFSEKQTQQAAKRFT-----RIALKPYLGSQPLKSRELFQSIL 233
>gi|329123646|ref|ZP_08252206.1| recombination protein O [Haemophilus aegyptius ATCC 11116]
gi|327469845|gb|EGF15310.1| recombination protein O [Haemophilus aegyptius ATCC 11116]
Length = 236
Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W + A
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSA 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDCTMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDAVRQAAKRFT-----RIALKPYLGDKPLKSRELFSQHIL 233
>gi|153835469|ref|ZP_01988136.1| DNA repair protein RecO [Vibrio harveyi HY01]
gi|269960403|ref|ZP_06174776.1| DNA repair protein recO [Vibrio harveyi 1DA3]
gi|148867980|gb|EDL67177.1| DNA repair protein RecO [Vibrio harveyi HY01]
gi|269834830|gb|EEZ88916.1| DNA repair protein recO [Vibrio harveyi 1DA3]
Length = 243
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRITLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L + + R L P L+ L
Sbjct: 71 -MKTLRQAEPISLGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQSD 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG D + L
Sbjct: 130 NPEPGLRRFELALLSSMGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + + LK+A + T + AL+ + RE F+
Sbjct: 190 NELIAISERRFVTKEQLKAAKRFT-----RMALKPYLGGKPLKSRELFI 233
>gi|14195092|sp|P57974|RECO_PASMU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 240
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 11/239 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L ++Y E ++++E+ T + GR + ++ R + ILQ + + W
Sbjct: 7 NWQ-RGFVLHRKAYSETSLLVELFTEETGRLTVLAKGARAKRSALKGILQPFTPLLLRWS 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + A L + G L R L L+ L
Sbjct: 66 GRSELKTLTKVEP---AAIALPLQQTALYSGFYVNELLCRVLEPETGYPHLFQDYLRCLT 122
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E LL+ +G+G+D C +G D + +
Sbjct: 123 GLASAEHLIEPSLRHFEFQLLQTLGYGVDFCHCAGSGELVDENMTYRYREEKGFIASLIK 182
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ Q D+ +L++A + T L +Y RE F +L
Sbjct: 183 DNLTFYGRELLAFDARQFHDSATLQAAKRFTRIALKQYL---GNKPL-KSRELFTQYML 237
>gi|15603732|ref|NP_246806.1| DNA repair protein RecO [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12722295|gb|AAK03951.1| RecO [Pasteurella multocida subsp. multocida str. Pm70]
Length = 236
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 11/239 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L ++Y E ++++E+ T + GR + ++ R + ILQ + + W
Sbjct: 3 NWQ-RGFVLHRKAYSETSLLVELFTEETGRLTVLAKGARAKRSALKGILQPFTPLLLRWS 61
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + A L + G L R L L+ L
Sbjct: 62 GRSELKTLTKVEP---AAIALPLQQTALYSGFYVNELLCRVLEPETGYPHLFQDYLRCLT 118
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E LL+ +G+G+D C +G D + +
Sbjct: 119 GLASAEHLIEPSLRHFEFQLLQTLGYGVDFCHCAGSGELVDENMTYRYREEKGFIASLIK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ Q D+ +L++A + T L +Y RE F +L
Sbjct: 179 DNLTFYGRELLAFDARQFHDSATLQAAKRFTRIALKQYL---GNKPL-KSRELFTQYML 233
>gi|319896660|ref|YP_004134853.1| DNA repair protein rec0 [Haemophilus influenzae F3031]
gi|317432162|emb|CBY80513.1| DNA repair protein Rec0 [Haemophilus influenzae F3031]
Length = 236
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W + A
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSA 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 ETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDCTMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFETLDFSDDSVRQAAKRFT-----RIALKPYLGDKPLKSRELFSQHIL 233
>gi|327484951|gb|AEA79358.1| DNA recombination and repair protein RecO [Vibrio cholerae
LMA3894-4]
Length = 241
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVSLMAKGARGKRSNLKGALQPFTPLLLKWSGNSS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|153826906|ref|ZP_01979573.1| DNA repair protein RecO [Vibrio cholerae MZO-2]
gi|229527067|ref|ZP_04416462.1| DNA recombination and repair protein RecO [Vibrio cholerae
12129(1)]
gi|254291659|ref|ZP_04962447.1| DNA repair protein RecO [Vibrio cholerae AM-19226]
gi|149739269|gb|EDM53531.1| DNA repair protein RecO [Vibrio cholerae MZO-2]
gi|150422431|gb|EDN14390.1| DNA repair protein RecO [Vibrio cholerae AM-19226]
gi|229335464|gb|EEO00946.1| DNA recombination and repair protein RecO [Vibrio cholerae
12129(1)]
Length = 241
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVSLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|269965787|ref|ZP_06179884.1| DNA repair protein recO [Vibrio alginolyticus 40B]
gi|269829655|gb|EEZ83892.1| DNA repair protein recO [Vibrio alginolyticus 40B]
Length = 243
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRMTLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L P L+ L
Sbjct: 71 -MKTLRQAEPISLGLPLTGINLYSAMYVNELIGRILMAEVPMPALFHDYLHALTELAHNE 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D + L
Sbjct: 130 NPEPALRRFELALLSAMGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + + LK+A + T + AL+ + RE F+
Sbjct: 190 NELIAISERRFVTKEQLKAAKRFT-----RIALKPYLGGKPLKSREFFI 233
>gi|319775804|ref|YP_004138292.1| DNA repair protein Rec0 [Haemophilus influenzae F3047]
gi|317450395|emb|CBY86611.1| DNA repair protein Rec0 [Haemophilus influenzae F3047]
Length = 236
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R Y E ++++++ T + GR + ++ R + +LQ + + W + A
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKNA 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L G L R + P L+ L
Sbjct: 67 LKTLTKAEPAAITLP---LQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLAT 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D C +G D + +
Sbjct: 124 KTNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDNLTF 183
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
++ D ++A + T + AL+ + RE F +L
Sbjct: 184 YGRDLLAFEALDFSDDVVRQAAKRFT-----RIALKPYLGDKPLKSRELFSQHIL 233
>gi|260598948|ref|YP_003211519.1| DNA repair protein recO [Cronobacter turicensis z3032]
gi|260218125|emb|CBA32921.1| DNA repair protein recO [Cronobacter turicensis z3032]
Length = 245
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 78/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E ++I+++ + + GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHARPWSETSLIIDLFSEESGRVRVVAKGARRKRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL + R L EL+
Sbjct: 60 WSGRGDVKN---LTSAEAVSLALPLSGITLYSGLYVNELVARVLEPETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G+D C TG D +
Sbjct: 117 IQALAGATGTPEPALRRFELALLGHLGYGVDFLHCAGTGDEVDDAMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNTSFTGRQLKALATRDFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|254230526|ref|ZP_04923897.1| DNA repair protein RecO [Vibrio sp. Ex25]
gi|262393272|ref|YP_003285126.1| DNA recombination and repair protein RecO [Vibrio sp. Ex25]
gi|151936951|gb|EDN55838.1| DNA repair protein RecO [Vibrio sp. Ex25]
gi|262336866|gb|ACY50661.1| DNA recombination and repair protein RecO [Vibrio sp. Ex25]
Length = 243
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRMTLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L P L+ L
Sbjct: 71 -MKTLRQAEPISLGLPLTGINLYSAMYVNELIGRILMAEVPMPALFHDYLHALTELAHNE 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG D + L
Sbjct: 130 NPEPALRRFELALLSSMGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + + LK+A + T + AL+ + RE F+
Sbjct: 190 NELIAISERRFVTKEQLKAAKRFT-----RIALKPYLGGKPLKSREFFI 233
>gi|315635029|ref|ZP_07890310.1| recombination protein O [Aggregatibacter segnis ATCC 33393]
gi|315476291|gb|EFU67042.1| recombination protein O [Aggregatibacter segnis ATCC 33393]
Length = 247
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 13/235 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L +SY E +++++++T +GR + ++ R + +LQ + + W
Sbjct: 14 NWQ-RGFVLHRKSYSETSLLVDLLTEDFGRISVLAKGARAKRSMLKGVLQPFTPLLLRWS 72
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + A L + G + R L +L+ L
Sbjct: 73 GRGDLKILTKAEP---AAIALPLQNVALYSGFYLNELICRVLEPETAYPQLFQHYLQCLT 129
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + E LL+ +G+G+D T C +G + + +
Sbjct: 130 QLALSQTHVEPALRTFEFQLLRTLGYGIDFTHCAGSGKAVEADMTYRYREEKGFIASLIK 189
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+++ Q + L +A + T + AL+ + RE F
Sbjct: 190 DNLTFYGRELLAFEQTQFDEPSVLSAAKRFT-----RIALKPYLGDKPLKSRELF 239
>gi|153803097|ref|ZP_01957683.1| DNA repair protein RecO [Vibrio cholerae MZO-3]
gi|153830872|ref|ZP_01983539.1| DNA repair protein RecO [Vibrio cholerae 623-39]
gi|124121379|gb|EAY40122.1| DNA repair protein RecO [Vibrio cholerae MZO-3]
gi|148873641|gb|EDL71776.1| DNA repair protein RecO [Vibrio cholerae 623-39]
Length = 241
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVSLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASIRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|229521286|ref|ZP_04410706.1| DNA recombination and repair protein RecO [Vibrio cholerae TM
11079-80]
gi|229341818|gb|EEO06820.1| DNA recombination and repair protein RecO [Vibrio cholerae TM
11079-80]
Length = 241
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L C L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVACPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|229524446|ref|ZP_04413851.1| DNA recombination and repair protein RecO [Vibrio cholerae bv.
albensis VL426]
gi|262190711|ref|ZP_06048942.1| DNA recombination and repair protein RecO [Vibrio cholerae CT
5369-93]
gi|229338027|gb|EEO03044.1| DNA recombination and repair protein RecO [Vibrio cholerae bv.
albensis VL426]
gi|262033423|gb|EEY51930.1| DNA recombination and repair protein RecO [Vibrio cholerae CT
5369-93]
Length = 241
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNSS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|254507488|ref|ZP_05119622.1| DNA repair protein RecO [Vibrio parahaemolyticus 16]
gi|219549558|gb|EED26549.1| DNA repair protein RecO [Vibrio parahaemolyticus 16]
Length = 247
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 11/232 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 16 FVLHRRPYSESSLILDVFSEEYGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNGS-- 73
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ G+ + R L P L+ L
Sbjct: 74 -MKTLRQAEPISLGLPLTGINLYSGMYVNELIGRVLMAEVPMPALFHDYLHVLTELAQCD 132
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C +G + +
Sbjct: 133 NPEPALRRFELALLSAMGYGVDFLHCAGSGEPIEPTMTYRYREQKGFIASVRYDNLTFKG 192
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
E + + LK+A + T + AL+ + RE F+ +
Sbjct: 193 DELIAISERRFTTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFVAMI 239
>gi|15642455|ref|NP_232088.1| DNA repair protein RecO [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121590991|ref|ZP_01678310.1| DNA repair protein RecO [Vibrio cholerae 2740-80]
gi|121728978|ref|ZP_01681982.1| DNA repair protein RecO [Vibrio cholerae V52]
gi|147673381|ref|YP_001217961.1| DNA repair protein RecO [Vibrio cholerae O395]
gi|153214505|ref|ZP_01949414.1| DNA repair protein RecO [Vibrio cholerae 1587]
gi|227082580|ref|YP_002811131.1| DNA repair protein RecO [Vibrio cholerae M66-2]
gi|229507481|ref|ZP_04396986.1| DNA recombination and repair protein RecO [Vibrio cholerae BX
330286]
gi|229512324|ref|ZP_04401803.1| DNA recombination and repair protein RecO [Vibrio cholerae B33]
gi|229519460|ref|ZP_04408903.1| DNA recombination and repair protein RecO [Vibrio cholerae RC9]
gi|229606986|ref|YP_002877634.1| DNA repair protein RecO [Vibrio cholerae MJ-1236]
gi|254226244|ref|ZP_04919837.1| DNA repair protein RecO [Vibrio cholerae V51]
gi|254849584|ref|ZP_05238934.1| DNA repair protein recO [Vibrio cholerae MO10]
gi|255746870|ref|ZP_05420815.1| DNA recombination and repair protein RecO [Vibrio cholera CIRS 101]
gi|258622343|ref|ZP_05717368.1| DNA repair protein recO [Vibrio mimicus VM573]
gi|258626727|ref|ZP_05721549.1| DNA repair protein recO [Vibrio mimicus VM603]
gi|261211553|ref|ZP_05925841.1| DNA recombination and repair protein RecO [Vibrio sp. RC341]
gi|262162035|ref|ZP_06031051.1| DNA recombination and repair protein RecO [Vibrio cholerae INDRE
91/1]
gi|262167290|ref|ZP_06035000.1| DNA recombination and repair protein RecO [Vibrio cholerae RC27]
gi|262170592|ref|ZP_06038270.1| DNA recombination and repair protein RecO [Vibrio mimicus MB-451]
gi|298500184|ref|ZP_07009989.1| DNA repair protein RecO [Vibrio cholerae MAK 757]
gi|20139781|sp|Q9KPB4|RECO_VIBCH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|172047581|sp|A5F5H6|RECO_VIBC3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790740|sp|C3LR02|RECO_VIBCM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|9657037|gb|AAF95601.1| DNA repair protein RecO [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547168|gb|EAX57297.1| DNA repair protein RecO [Vibrio cholerae 2740-80]
gi|121628744|gb|EAX61211.1| DNA repair protein RecO [Vibrio cholerae V52]
gi|124115307|gb|EAY34127.1| DNA repair protein RecO [Vibrio cholerae 1587]
gi|125621217|gb|EAZ49558.1| DNA repair protein RecO [Vibrio cholerae V51]
gi|146315264|gb|ABQ19803.1| DNA repair protein RecO [Vibrio cholerae O395]
gi|227010468|gb|ACP06680.1| DNA repair protein RecO [Vibrio cholerae M66-2]
gi|227014351|gb|ACP10561.1| DNA repair protein RecO [Vibrio cholerae O395]
gi|229344149|gb|EEO09124.1| DNA recombination and repair protein RecO [Vibrio cholerae RC9]
gi|229352289|gb|EEO17230.1| DNA recombination and repair protein RecO [Vibrio cholerae B33]
gi|229354986|gb|EEO19907.1| DNA recombination and repair protein RecO [Vibrio cholerae BX
330286]
gi|229369641|gb|ACQ60064.1| DNA recombination and repair protein RecO [Vibrio cholerae MJ-1236]
gi|254845289|gb|EET23703.1| DNA repair protein recO [Vibrio cholerae MO10]
gi|255735272|gb|EET90672.1| DNA recombination and repair protein RecO [Vibrio cholera CIRS 101]
gi|258580983|gb|EEW05910.1| DNA repair protein recO [Vibrio mimicus VM603]
gi|258585359|gb|EEW10083.1| DNA repair protein recO [Vibrio mimicus VM573]
gi|260839508|gb|EEX66134.1| DNA recombination and repair protein RecO [Vibrio sp. RC341]
gi|261891668|gb|EEY37654.1| DNA recombination and repair protein RecO [Vibrio mimicus MB-451]
gi|262024265|gb|EEY42956.1| DNA recombination and repair protein RecO [Vibrio cholerae RC27]
gi|262028284|gb|EEY46941.1| DNA recombination and repair protein RecO [Vibrio cholerae INDRE
91/1]
gi|297540877|gb|EFH76931.1| DNA repair protein RecO [Vibrio cholerae MAK 757]
Length = 241
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|332188696|ref|ZP_08390410.1| DNA repair protein RecO [Sphingomonas sp. S17]
gi|332011260|gb|EGI53351.1| DNA repair protein RecO [Sphingomonas sp. S17]
Length = 243
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 77/243 (31%), Positives = 108/243 (44%), Gaps = 4/243 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ AIIL VR +GE I+ +TR G G+VR G+S ++P+LQ GN + WR+
Sbjct: 1 MHRVAPAIILSVRPHGEHGAIVRALTRDDGVQPGYVRGGRSRALRPVLQPGNAIIGEWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A+ L E S LPE +P LYD L+ L
Sbjct: 61 RTAEQLPALTLEPGHSRAGLHGEPLAAAGIEWLCALTAAALPEEQPYPILYDALDAVLTA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ V+ EL+LL +GFGLDL +C VTG T DL +VSPKSG AV
Sbjct: 121 IESAPSARGWAGALVRYELLLLGQLGFGLDLERCTVTGGTDDLAFVSPKSGAAVSVGAAF 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
Y ++ LP FL + D + +A ++T +FL + L R +
Sbjct: 181 GYEARLFSLPLFLREGGAA-DWPDIFAAGRITAHFLARDILAGLRHDPMPARARLFDRFK 239
Query: 238 ELI 240
+
Sbjct: 240 RAV 242
>gi|225631179|ref|ZP_03787882.1| DNA repair protein RecO [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591127|gb|EEH12306.1| DNA repair protein RecO [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 240
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+KN+IL + T+ +G+ G + + + Q NL+ W +
Sbjct: 1 MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYK--FQISNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG F E++ES L + S + + LPE EPC LYD F++
Sbjct: 59 KLPENLGFFECELIESPFHHFFQDRLKSITIVSFSSILEKVLPESEPCAMLYDNFRYFID 118
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 119 VIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDY 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + LR L
Sbjct: 179 YADKLLPFPQMLHDVYNNTLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLML 238
Query: 234 GK 235
Sbjct: 239 SL 240
>gi|262404772|ref|ZP_06081327.1| DNA recombination and repair protein RecO [Vibrio sp. RC586]
gi|262349804|gb|EEY98942.1| DNA recombination and repair protein RecO [Vibrio sp. RC586]
Length = 241
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL++ + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDIFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|262166500|ref|ZP_06034237.1| DNA recombination and repair protein RecO [Vibrio mimicus VM223]
gi|262026216|gb|EEY44884.1| DNA recombination and repair protein RecO [Vibrio mimicus VM223]
Length = 241
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVATPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLASMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERSFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|320155322|ref|YP_004187701.1| DNA recombination and repair protein RecO [Vibrio vulnificus
MO6-24/O]
gi|319930634|gb|ADV85498.1| DNA recombination and repair protein RecO [Vibrio vulnificus
MO6-24/O]
Length = 243
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 11/231 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + ++GR + +S R + LQ + + W +
Sbjct: 11 FVLHRRPYSESSLILDVFSEEFGRITLMSKGARSKRSNLKGALQPFTPLLLKWSGKG--- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L + P L+ L
Sbjct: 68 AMKTLRQAEPISLGLPLTGIYLYSAMYVNELVGRVLMQEVPMPGLFHDYLFALTELAQAD 127
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D + L
Sbjct: 128 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPIDPQMTYRYREQKGFIASVRRDNLTFLG 187
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
E + + + L++A + T + AL+ + RE F+
Sbjct: 188 NELIAISERRFLTKEQLQAAKRFT-----RIALKPYLGGKPLKSRELFIQM 233
>gi|218660067|ref|ZP_03515997.1| DNA repair protein RecO [Rhizobium etli IE4771]
Length = 174
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 77/155 (49%), Positives = 110/155 (70%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILGV+ +GE ++I+EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 19 MQWQDHAIILGVKRHGETSVIVEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 78
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
RL ++LGEFR E + A+++ ++ +YG+Q++ L R LPER+P L+D L + L+
Sbjct: 79 RLDEHLGEFRVEPVTLRAARMMETATAVYGVQAMGALLRLLPERDPHPHLFDALEVILDH 138
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
P+ G++FV+ EL +L ++GFGLDL +C TG
Sbjct: 139 LHNPADAGELFVRFELAVLNDLGFGLDLAECAATG 173
>gi|229514085|ref|ZP_04403547.1| DNA recombination and repair protein RecO [Vibrio cholerae TMA 21]
gi|229349266|gb|EEO14223.1| DNA recombination and repair protein RecO [Vibrio cholerae TMA 21]
Length = 241
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNSS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASIRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|156932892|ref|YP_001436808.1| hypothetical protein ESA_00694 [Cronobacter sakazakii ATCC BAA-894]
gi|166221891|sp|A7MH01|RECO_ENTS8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|156531146|gb|ABU75972.1| hypothetical protein ESA_00694 [Cronobacter sakazakii ATCC BAA-894]
Length = 245
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E ++I+++ + + GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHARPWSETSLIIDLFSEESGRVRVVAKGARRKRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL + R L EL+
Sbjct: 60 WSGRGDVKN---LTSAEAVSLALPLSGITLYSGLYVNELVARVLEPETRFSELFFDYLHC 116
Query: 118 LNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G+D C TG D +
Sbjct: 117 IQALAGASGSPEPALRRFELALLGHLGYGVDFLHCAGTGDEVDDAMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNTSFTGRQLKALATREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|58697108|ref|ZP_00372549.1| DNA repair protein RecO [Wolbachia endosymbiont of Drosophila
simulans]
gi|58698226|ref|ZP_00373146.1| DNA repair protein RecO [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225630040|ref|YP_002726831.1| DNA repair protein RecO [Wolbachia sp. wRi]
gi|254790743|sp|C0R5J8|RECO_WOLWR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|58535253|gb|EAL59332.1| DNA repair protein RecO [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58536603|gb|EAL59934.1| DNA repair protein RecO [Wolbachia endosymbiont of Drosophila
simulans]
gi|225592021|gb|ACN95040.1| DNA repair protein RecO [Wolbachia sp. wRi]
Length = 240
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+KN+IL + T+ +G+ G + + + Q NL+ W +
Sbjct: 1 MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYK--FQISNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG F+ E++ES L + S + + LPE EPC LYD F++
Sbjct: 59 KLPENLGFFKCELIESSFHHFFQDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFID 118
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + G
Sbjct: 119 VIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKAGDY 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + LR L
Sbjct: 179 YADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLML 238
Query: 234 GK 235
Sbjct: 239 SL 240
>gi|190149856|ref|YP_001968381.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307263179|ref|ZP_07544800.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 13
str. N273]
gi|238692329|sp|B3GX87|RECO_ACTP7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189914987|gb|ACE61239.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871541|gb|EFN03264.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 13
str. N273]
Length = 240
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + R + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPRSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPEQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFKENEGFIASLLR 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNASFLGKDLLAFEQLDFSDKATLQAAKRFT-----RMALKPYLGSQPLKSRELFQSILP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|218710567|ref|YP_002418188.1| DNA repair protein RecO [Vibrio splendidus LGP32]
gi|254790741|sp|B7VK77|RECO_VIBSL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218323586|emb|CAV19825.1| DNA repair protein recO [Vibrio splendidus LGP32]
Length = 242
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 11/232 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L + L
Sbjct: 67 -MKTLRQAEPISLGLPLAGINLYSAMYVNELVGRVLMAEVAMPAFFHDYLHALTELAHNE 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D + +
Sbjct: 126 NPEPALRRFELALLSAMGYGVDFLHCAGTGEAIDPSMTYRYREQKGFIASVRRDNLTFMG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
E + I + LK+A + T + AL+ + RE F+ +
Sbjct: 186 DELIAISERRFITKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFMPTI 232
>gi|303252177|ref|ZP_07338345.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307247517|ref|ZP_07529562.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|302648960|gb|EFL79148.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|306856020|gb|EFM88178.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
Length = 240
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + R + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPRSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNYTFLGKDLLAFEQLDFSDKATLQAAKRFT-----RIALKPYLGSQPLKSRELFQSVLP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|42520114|ref|NP_966029.1| DNA repair protein RecO [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|81652824|sp|Q73IE9|RECO_WOLPM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|42409851|gb|AAS13963.1| recO-related protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 240
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+KN+IL + T+ +G+ G + + + Q NL+ W +
Sbjct: 1 MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYK--FQISNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG + E++ES L + S + + LPE EPC LYD L F++
Sbjct: 59 KLPENLGFLKCELIESPFHHFFQDRLKSITIVSFSSILEKVLPESEPCAMLYDNLRYFID 118
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 119 VIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDY 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + LR L
Sbjct: 179 YADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLML 238
Query: 234 GK 235
Sbjct: 239 SL 240
>gi|222475203|ref|YP_002563619.1| DNA repair protein RecO [Anaplasma marginale str. Florida]
gi|254790506|sp|B9KIQ1|RECO_ANAMF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|222419340|gb|ACM49363.1| DNA repair protein RecO [Anaplasma marginale str. Florida]
Length = 238
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 11/242 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ +++G R YG+++++L ++TR G G R + LQ G+L+ WR+
Sbjct: 1 MQWREMGVVMGTRPYGDEHLLLSILTRNRGLRRGLTRLTKKR----PLQIGDLIDATWRA 56
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
+L NLG F EV+ S + L L SI + LPE EP LYD F
Sbjct: 57 KLPTNLGHFTCEVIASAFYSYFRDRIKLMCLSSITHIMSTALPENEPHPTLYDSFQDFAA 116
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + ++++EL++L +GF LDL+KC V+ +LL++SPK+G A+ +VG Y
Sbjct: 117 AAEAEAPWYNHYLKLELLVLSQLGFALDLSKCAVSNSKDNLLFISPKTGRALSEAVGHAY 176
Query: 180 AEKMLVLPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
K+L LP L E + AD + ++ +FL+++ LQ + R+ G
Sbjct: 177 RNKLLPLPKVLRSISCGVETECCSADEFALSLKILGFFLHRHLLQESH-TFQESRKILTG 235
Query: 235 KL 236
L
Sbjct: 236 LL 237
>gi|37681013|ref|NP_935622.1| DNA repair protein RecO [Vibrio vulnificus YJ016]
gi|42559437|sp|Q7MHP0|RECO_VIBVY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|37199763|dbj|BAC95593.1| Recombinational DNA repair protein [Vibrio vulnificus YJ016]
Length = 243
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 11/231 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + ++GR + +S R + LQ + + W +
Sbjct: 11 FVLHRRPYSESSLILDVFSEEFGRITLMSKGARSKRSNLKGALQPFTPLLLKWSGKG--- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ L + R L + P L+ L
Sbjct: 68 AMKTLRQAEPISLGLPLTGINLYSALYVNELIGRVLMQEVPMPGLFHDYLFALTELAQAD 127
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D + L
Sbjct: 128 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPIDPQMTYRYREQKGFIASVRRDNLTFLG 187
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
E + + + L++A + T + AL+ + RE F+
Sbjct: 188 NELIAISERRFLTKEQLQAAKRFT-----RIALKPYLGGKPLKSRELFIQM 233
>gi|99035892|ref|ZP_01314943.1| hypothetical protein Wendoof_01000221 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 240
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 9/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ II+ + YG+KN+IL + T+ +G+ G + + + Q NL+ W +
Sbjct: 1 MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYK--FQISNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG F+ E++ES L + S + + LPE EPC LYD F++
Sbjct: 59 KLPENLGFFKCELIESPFHHFFQDRLKSITIVSFSSILEKVLPESEPCAMLYDNFRYFID 118
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 119 VIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDY 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY + LR L
Sbjct: 179 YADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLML 238
Query: 234 GK 235
Sbjct: 239 SL 240
>gi|323499983|ref|ZP_08104939.1| DNA repair protein RecO [Vibrio sinaloensis DSM 21326]
gi|323314949|gb|EGA68004.1| DNA repair protein RecO [Vibrio sinaloensis DSM 21326]
Length = 240
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 72/229 (31%), Gaps = 11/229 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + ++GR + +S R + LQ + + W +
Sbjct: 10 FVLHRRPYSESSLILDVFSEEFGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNGS-- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L + + R L P L+ L
Sbjct: 68 -MKTLRQAEPISLGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQSD 126
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D +
Sbjct: 127 NPEPALRRFELALLSAMGYGVDFMHCAGTGEPVDPGMTYRYREQKGFIASVRRDNLTFYG 186
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
E + + LK+A + T + AL+ + RE FL
Sbjct: 187 SELIAISERRFTTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFL 230
>gi|261253898|ref|ZP_05946471.1| DNA recombination and repair protein RecO [Vibrio orientalis CIP
102891]
gi|260937289|gb|EEX93278.1| DNA recombination and repair protein RecO [Vibrio orientalis CIP
102891]
Length = 255
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 11/232 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W +
Sbjct: 24 FVLHRRPYSESSLILDVFSEEYGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNGS-- 81
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ G+ + R L L+ L
Sbjct: 82 -MKTLRQAEPISLGLPLTGINLYSGMYVNELIGRVLMAEVAMPALFHDYLHALTELAQAD 140
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C +G D +
Sbjct: 141 NPEPALRRFELALLSAMGYGVDFLHCAGSGEPIDPGMTYRYREQKGFIASVRHDNLTFRG 200
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
E + + LK+A + T + AL+ + RE F+ +
Sbjct: 201 DELIAISERRFTTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFMSMI 247
>gi|260775206|ref|ZP_05884104.1| DNA recombination and repair protein RecO [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608907|gb|EEX35069.1| DNA recombination and repair protein RecO [Vibrio coralliilyticus
ATCC BAA-450]
Length = 242
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 11/232 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + ++GR + +S R + LQ + + W + +
Sbjct: 10 FVLHRRPYSESSLILDVFSEEFGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ + + R L L+ L
Sbjct: 68 -MKTLRQAEPISLGLPLTGINLYSAMYVNELIGRVLMAEVSMPALFHDYLHALTELAQCE 126
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + + +
Sbjct: 127 NPEPALRRFELALLSAMGYGVDFLHCAGTGEPIEPEMTYRYREQKGFIASVRRDNLTFVG 186
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
E + + LK+A + T + AL+ + RE F+ L
Sbjct: 187 NELIAISERRFTTKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFMQIL 233
>gi|254360746|ref|ZP_04976894.1| DNA recombination protein RecO [Mannheimia haemolytica PHL213]
gi|153091316|gb|EDN73290.1| DNA recombination protein RecO [Mannheimia haemolytica PHL213]
Length = 240
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 12/242 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ A +L R Y E ++++E T +GR + + R + +LQ + + W
Sbjct: 5 QWQ-RAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRARSPLKAVLQPFTPLLLRWS 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 64 GKGDLKTLTKAEP---AALTLPMETLSLYSGFYINEVLARVLENQTAYPELFQHYLRCIT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I I E LK +G+G+D T C TG+ D + L
Sbjct: 121 ELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVDPKMTYQFQENQGFIASLLQN 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ L + + + + ++A + T + AL+ + RE F L
Sbjct: 181 NQSFLGSDLLAFAQLDFSEKSTQQAAKRFT-----RMALKPYLGSQPLKSRELFQSILPN 235
Query: 239 LI 240
+
Sbjct: 236 KL 237
>gi|303251582|ref|ZP_07337756.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307245402|ref|ZP_07527490.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307249748|ref|ZP_07531727.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|307252105|ref|ZP_07534004.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307254357|ref|ZP_07536195.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|307256564|ref|ZP_07538345.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|307258815|ref|ZP_07540547.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
gi|302649580|gb|EFL79762.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306853743|gb|EFM85960.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306858256|gb|EFM90333.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306860405|gb|EFM92419.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306862656|gb|EFM94612.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306864974|gb|EFM96876.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|306867166|gb|EFM99022.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
Length = 240
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + R + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPRSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNYTFLGKDLLAFEQLDFSDKATLQAAKRFT-----RMALKPYLGSQPLKSRELFQSILP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|237732551|ref|ZP_04563032.1| DNA repair protein recO [Citrobacter sp. 30_2]
gi|226908090|gb|EEH94008.1| DNA repair protein recO [Citrobacter sp. 30_2]
Length = 236
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLVLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L L+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELISRVLEYETRFSALFFDYLNC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G+D T C +G D +
Sbjct: 117 IQALAGATGSPEPALRRFELALLGHLGYGVDFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNATFTGRHLKALESREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|172045973|sp|A4WDD6|RECO_ENT38 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 235
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G+D C +G + D +
Sbjct: 117 IQALAGATDSPEPALRRFELALLGHLGYGVDFLHCAGSGDSVDDTMTYRYREEKGFIASI 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ E + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNTTFTGRHLRALSEREFPDQDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|46143334|ref|ZP_00135440.2| COG1381: Recombinational DNA repair protein (RecF pathway)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208027|ref|YP_001053252.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae L20]
gi|166221881|sp|A3MZR1|RECO_ACTP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|126096819|gb|ABN73647.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 240
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + R + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNYTFLGKDLLAFEQLNFSDKATLQAAKRFT-----RMALKPYLGSQPLKSRELFQSILP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|168821431|ref|ZP_02833431.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205342020|gb|EDZ28784.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320087080|emb|CBY96849.1| DNA repair protein recO Recombination protein O [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 242
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +E + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEEREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|168238324|ref|ZP_02663382.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194738093|ref|YP_002115642.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|238693669|sp|B4TS12|RECO_SALSV RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|194713595|gb|ACF92816.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197288836|gb|EDY28209.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322613349|gb|EFY10291.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620447|gb|EFY17312.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625085|gb|EFY21914.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629471|gb|EFY26247.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633858|gb|EFY30597.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635464|gb|EFY32175.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639860|gb|EFY36539.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644254|gb|EFY40798.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649946|gb|EFY46366.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654871|gb|EFY51188.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658201|gb|EFY54467.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661727|gb|EFY57945.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669708|gb|EFY65854.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673285|gb|EFY69390.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322674926|gb|EFY71013.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682949|gb|EFY78967.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685610|gb|EFY81605.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323191962|gb|EFZ77200.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200405|gb|EFZ85486.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201305|gb|EFZ86372.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208375|gb|EFZ93315.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211549|gb|EFZ96387.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215981|gb|EGA00713.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221762|gb|EGA06170.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225630|gb|EGA09857.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229348|gb|EGA13472.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235337|gb|EGA19421.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237477|gb|EGA21540.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245232|gb|EGA29233.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248806|gb|EGA32733.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254014|gb|EGA37835.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323259062|gb|EGA42710.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323267768|gb|EGA51249.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269673|gb|EGA53125.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 242
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALDAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|56416838|ref|YP_153912.1| DNA repair protein RecO [Anaplasma marginale str. St. Maries]
gi|81599148|sp|Q5PAM3|RECO_ANAMM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56388070|gb|AAV86657.1| hypothetical protein AM680 [Anaplasma marginale str. St. Maries]
Length = 238
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 11/242 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ +++G R YG+++++L ++TR G G R + LQ G+L+ WR+
Sbjct: 1 MQWREMGVVMGTRPYGDEHLLLSILTRNRGLRRGLTRFTKKR----PLQIGDLIDATWRA 56
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
+L NLG F EV+ S + L L SI + LPE EP LYD F
Sbjct: 57 KLPTNLGHFTCEVIASAFYSYFRDRIKLMCLSSITHIMSTALPENEPHPTLYDSFQDFAA 116
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + ++++EL++L +GF LDL+KC V+ +LL++SPK+G A+ +VG Y
Sbjct: 117 AAEAEAPWYNHYLKLELLVLSQLGFALDLSKCAVSNSKDNLLFISPKTGRALSEAVGCAY 176
Query: 180 AEKMLVLPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+K+L LP L E + AD + ++ +FL ++ LQ + R+ G
Sbjct: 177 RDKLLPLPKVLRSISCGVETECCSADEFALSLRILGFFLRRHLLQESH-TFQESRKILTG 235
Query: 235 KL 236
L
Sbjct: 236 LL 237
>gi|270265298|ref|ZP_06193559.1| hypothetical protein SOD_m00300 [Serratia odorifera 4Rx13]
gi|270040702|gb|EFA13805.1| hypothetical protein SOD_m00300 [Serratia odorifera 4Rx13]
Length = 243
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 12/238 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+ A +L R Y E +++L++ T +GR + +S R + LQ + V W R
Sbjct: 5 ERAFVLHGRPYSETSLMLDMFTEGHGRVRLLAKGARSRRSNLKGCLQPFTPLLVRWGGRG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH- 121
LS + GL L R L + L+ L
Sbjct: 65 EVKTLRNAEA---VSLGLPLSGMMLYSGLYVNELLSRVLEQEANYSVLFFDYLQCLQALA 121
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ Q EL LL ++G+GLD C +G D + +
Sbjct: 122 AEDISPEQALRQFELALLNHLGYGLDFLHCAGSGQPVDDGMTYRYREEKGFIASLVVDHY 181
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
E Q DA +L++A + T + AL+ + RE F + +
Sbjct: 182 SFTGRELRALAERQFPDAQTLRAAKRFT-----RMALKPYLGGKPLKSRELFRQFVRK 234
>gi|85059763|ref|YP_455465.1| DNA repair protein RecO [Sodalis glossinidius str. 'morsitans']
gi|119361486|sp|Q2NS15|RECO_SODGM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|84780283|dbj|BAE75060.1| DNA repair protein RecO [Sodalis glossinidius str. 'morsitans']
Length = 260
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T Q GR + +S R + +LQ + W
Sbjct: 4 WQ-RAFVLHARPYSETSLLLDFFTEQQGRVRVLAKGARSRRSALKGVLQPFTPLLARWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R LS + GL L R L +L+ L
Sbjct: 63 RGEVKTLRSAEP---VSLGLPLSGLMLYSGLYINELLSRVLDHETDYSKLFYDYLHCLQW 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + EL LL ++G+G+D C +G D + L
Sbjct: 120 LAGATGSPEPALRRFELALLSHLGYGVDFLHCAGSGEPVDDAMTYRYREEKGFTASVLLD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + D D+L++A + T + AL+ + E F
Sbjct: 180 RYSFSGRELRALAEGEFPDIDTLRAAKRFT-----RMALKPYLGGKPLKSHELF 228
>gi|190570798|ref|YP_001975156.1| recO-related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019675|ref|ZP_03335480.1| recO-related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|254790742|sp|B3CPG9|RECO_WOLPP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|190357070|emb|CAQ54467.1| recO-related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994716|gb|EEB55359.1| recO-related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 242
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+D+ +I+ V+ YG+KN+IL + T+ +G+ G R + + Q NL+ W +
Sbjct: 1 MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYK--FQISNLLHAEWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN 119
+L +NLG + E++ES L + S + + LPE E C++LYD F++
Sbjct: 59 KLPENLGFLKCELIESPFHHFFQDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFID 118
Query: 120 CHKIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K ++ +EL+LL +GF LDL+KC VTGV ++L ++SPK+G AV + VG
Sbjct: 119 VIKHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDC 178
Query: 179 YAEKMLVLPSFLWKEEQT-----IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
YA+K+L P L + ++T YFLNKY LR L
Sbjct: 179 YADKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFML 238
Query: 234 G 234
Sbjct: 239 S 239
>gi|198245563|ref|YP_002216646.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|238690360|sp|B5FRC3|RECO_SALDC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|197940079|gb|ACH77412.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624401|gb|EGE30746.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 242
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + +LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGVLQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +E + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEEREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|27364936|ref|NP_760464.1| DNA repair protein RecO [Vibrio vulnificus CMCP6]
gi|31340326|sp|Q8DC74|RECO_VIBVU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|27361082|gb|AAO09991.1| DNA repair protein RecO [Vibrio vulnificus CMCP6]
Length = 243
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 11/231 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL++ + ++GR + +S R + LQ + + W +
Sbjct: 11 FVLHRRPYSESSLILDIFSEEFGRITLMSKGARSKRSNLKGALQPFTPLLLKWSGKG--- 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ L + R L + L+ L
Sbjct: 68 AMKTLRQAEPISLGLPLTGINLYSALYVNELIGRVLMQEVSMPGLFHDYLFALTELAQAD 127
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG D + L
Sbjct: 128 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPIDPQMTYRYREQKGFIASVRRDNLTFLG 187
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
E + + + L++A + T + AL+ + RE F+
Sbjct: 188 NELIAISERRFLTKEQLQAAKRFT-----RIALKPYLGGKPLKSRELFIQM 233
>gi|322514174|ref|ZP_08067239.1| recombination protein O [Actinobacillus ureae ATCC 25976]
gi|322119960|gb|EFX91962.1| recombination protein O [Actinobacillus ureae ATCC 25976]
Length = 240
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 74/243 (30%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T +GR + + R + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEDHGRITLLAKGARRPRSSLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L + L + L+ +
Sbjct: 63 GKGELKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLAKVLENQTAYPALFQHYLQCVT 119
Query: 120 CHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E LK +G+G++ C TG + L
Sbjct: 120 HLATQPDNLEAILRTFEFHTLKALGYGVNFGVCAATGDPVSPSMTYQFKENQGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNASFLGKDLLAFEQLDFSDKATLQAAKRFT-----RIALKPYLGSQPLKSRELFQSILP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|146312693|ref|YP_001177767.1| DNA repair protein RecO [Enterobacter sp. 638]
gi|145319569|gb|ABP61716.1| DNA replication and repair protein RecO [Enterobacter sp. 638]
Length = 236
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + V
Sbjct: 2 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVR 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 61 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHC 117
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G+D C +G + D +
Sbjct: 118 IQALAGATDSPEPALRRFELALLGHLGYGVDFLHCAGSGDSVDDTMTYRYREEKGFIASI 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ E + D D+L++A + T + AL+ + RE F
Sbjct: 178 VIDNTTFTGRHLRALSEREFPDQDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 229
>gi|269958745|ref|YP_003328532.1| DNA repair protein RecO [Anaplasma centrale str. Israel]
gi|269848574|gb|ACZ49218.1| DNA repair protein RecO [Anaplasma centrale str. Israel]
Length = 238
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 11/242 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W++ +++G R YG+++++L ++TR G G R + LQ G+L+ WR+
Sbjct: 1 MQWREMGVVMGTRPYGDEHLLLSILTRNRGLRRGLTRFTKKR----PLQIGDLIDATWRA 56
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLN 119
+L NLG F +EV+ S + L L SI + LPE EP LYD F
Sbjct: 57 KLPTNLGHFTYEVITSAFYSYFRDRIKLMCLSSITHIMSTALPENEPHPTLYDSFQDFAA 116
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + ++++EL++L +GF LDL+KC V+ +LL++SPK+G A+ +VG Y
Sbjct: 117 AAEAEAPWYNHYLKLELLVLSQLGFALDLSKCAVSNSKDNLLFISPKTGRALSEAVGCAY 176
Query: 180 AEKMLVLPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+K+L LP L E + AD + ++ +FL+++ LQ + R+ G
Sbjct: 177 RDKLLPLPKVLRSISCGVETECCSADEFALSLKILGFFLHRHLLQESH-TFQESRKILTG 235
Query: 235 KL 236
L
Sbjct: 236 LL 237
>gi|165975964|ref|YP_001651557.1| DNA repair protein RecO [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|238687534|sp|B0BUA8|RECO_ACTPJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|165876065|gb|ABY69113.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 240
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPHSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPEQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNYTFLGKDLLAFEQLDFSDKATLQAAKRFT-----RMALKPYLGSQPLKSRELFQNILP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|269101848|ref|ZP_06154545.1| DNA recombination and repair protein RecO [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161746|gb|EEZ40242.1| DNA recombination and repair protein RecO [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 236
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + GR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSEDSGRLSILSKGARRKRSNLKGALQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + S + + L R L + P L+ L
Sbjct: 61 SGKGS---MPVLTHAEPISIGLPMRSYILYSAMYVNEVLCRVLEAQTPYPVLFLDYLNVL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL+++G+G+D C +G+ + +
Sbjct: 118 RELAQADNPEPALRRFELALLQHLGYGIDFLHCAGSGLPVEDNMTYNYREQQGFIASIKM 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ + L++A + T + AL+ + RE F+
Sbjct: 178 GQLTFTGEQLKAIDARRFETPEQLRAAKRFT-----RIALKPYLGSKPLKSRELFI 228
>gi|1228148|gb|AAA92442.1| RecO [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 241
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|16761491|ref|NP_457108.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765899|ref|NP_461514.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29140812|ref|NP_804154.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412545|ref|YP_149620.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181144|ref|YP_217561.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161612651|ref|YP_001586616.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167549389|ref|ZP_02343148.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167992710|ref|ZP_02573806.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168243369|ref|ZP_02668301.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194446629|ref|YP_002041842.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194451401|ref|YP_002046641.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197248854|ref|YP_002147537.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265533|ref|ZP_03165607.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197361480|ref|YP_002141116.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|204929727|ref|ZP_03220801.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213425278|ref|ZP_03358028.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213583125|ref|ZP_03364951.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213646355|ref|ZP_03376408.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|224582879|ref|YP_002636677.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238912697|ref|ZP_04656534.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289804219|ref|ZP_06534848.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825503|ref|ZP_06544710.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|61230222|sp|P0A285|RECO_SALTY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|61230223|sp|P0A286|RECO_SALTI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|62287383|sp|Q5PIG3|RECO_SALPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|75481600|sp|Q57LD2|RECO_SALCH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189039772|sp|A9N1T3|RECO_SALPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238689917|sp|B5BAT2|RECO_SALPK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238690022|sp|B5F1F9|RECO_SALA4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238690622|sp|B4TE13|RECO_SALHS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238693589|sp|B4T1F6|RECO_SALNS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|25300564|pir||AI0828 DNA repair protein RecO [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16421126|gb|AAL21473.1| gap repair gene [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16503791|emb|CAD02781.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136437|gb|AAO68003.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126802|gb|AAV76308.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128777|gb|AAX66480.1| gap repair gene [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161362015|gb|ABX65783.1| hypothetical protein SPAB_00347 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405292|gb|ACF65514.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194409705|gb|ACF69924.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197092956|emb|CAR58386.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212557|gb|ACH49954.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243788|gb|EDY26408.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|204321446|gb|EDZ06646.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205325288|gb|EDZ13127.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205329107|gb|EDZ15871.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205337667|gb|EDZ24431.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|224467406|gb|ACN45236.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247774|emb|CBG25602.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994705|gb|ACY89590.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159127|emb|CBW18641.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913568|dbj|BAJ37542.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222716|gb|EFX47787.1| DNA recombination and repair protein RecO [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322715634|gb|EFZ07205.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323130910|gb|ADX18340.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332989506|gb|AEF08489.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 242
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|293394831|ref|ZP_06639121.1| recombination protein O [Serratia odorifera DSM 4582]
gi|291422582|gb|EFE95821.1| recombination protein O [Serratia odorifera DSM 4582]
Length = 243
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T +GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGHGRVRLLAKGARSRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R LS + GL L R L + L+
Sbjct: 60 WGGRGDIKTLRNAEA---VSLGLPLSGMMLYSGLYVNELLSRVLEQEADYSLLFFDYLQC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + Q EL LL ++G+G+D C +G D +
Sbjct: 117 LQALAAAERSPEQALRQFELALLHHLGYGVDFLHCAGSGEPVDDGMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ E Q DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRELRALAERQFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+ +
Sbjct: 232 VRK 234
>gi|207857986|ref|YP_002244637.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|238690389|sp|B5QTU6|RECO_SALEP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|206709789|emb|CAR34141.1| DNA repair protein recO [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 242
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +E + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEEREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|168466660|ref|ZP_02700514.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195630758|gb|EDX49350.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 242
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGKRVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|323941172|gb|EGB37357.1| recombination protein O [Escherichia coli E482]
Length = 242
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+GL+ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGLNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|168232157|ref|ZP_02657215.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194469835|ref|ZP_03075819.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456199|gb|EDX45038.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333544|gb|EDZ20308.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 242
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T+C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTRCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|157371902|ref|YP_001479891.1| DNA repair protein RecO [Serratia proteamaculans 568]
gi|166918732|sp|A8GI23|RECO_SERP5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157323666|gb|ABV42763.1| DNA repair protein RecO [Serratia proteamaculans 568]
Length = 243
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 12/238 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+ A +L R Y E +++L++ T +GR + +S R + LQ + V W R
Sbjct: 5 ERAFVLHGRPYSETSLMLDMFTEGHGRVRLLAKGARSRRSNLKGCLQPFTPLLVRWGGRG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH- 121
LS + GL L R L + L+ L
Sbjct: 65 EVKTLR---SAEAVSLGLPLSGMMLYSGLYVNELLSRVLEQEANYSVLFFDYLQCLQALA 121
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ Q EL LL ++G+GLD C +G+ D + +
Sbjct: 122 AEDVSPEQALRQFELALLNHLGYGLDFLHCAGSGLPVDDGMTYRYREEKGFIASLVVDHY 181
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
E Q D +L++A + T + AL+ + RE F + +
Sbjct: 182 SFTGRELRALAERQFPDVQTLRAAKRFT-----RMALKPYLGGKPLKSRELFRQFVRK 234
>gi|329890071|ref|ZP_08268414.1| recombinational DNA repair protein RecF pathway [Brevundimonas
diminuta ATCC 11568]
gi|328845372|gb|EGF94936.1| recombinational DNA repair protein RecF pathway [Brevundimonas
diminuta ATCC 11568]
Length = 200
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Query: 44 MQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LP 102
M+P LQ G V + RSR + LG R E + A L L L GL + + + LP
Sbjct: 1 MRPFLQPGARVVADLRSRTSDQLGSARLEPVGEGPAALFDDPLALTGLSAAAAVAQGALP 60
Query: 103 EREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLW 162
EREP + + +P V IFV+ E LL+++GFGLDL++C TG DL+W
Sbjct: 61 EREPHPGAFYAFEALMGAFAVPEVWPAIFVRFEAGLLEDLGFGLDLSRCASTGSMDDLVW 120
Query: 163 VSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
VSP++G AV R G PYA+K+L LP F+ + + +K+ +LT +FL ++
Sbjct: 121 VSPRTGRAVSREAGAPYADKLLALPPFMLGAQAGLGEGDVKAGLELTGHFLEQFVFHALN 180
Query: 223 IHCHLLRENFLGKLLEL 239
R + KL E
Sbjct: 181 RPLPPARVWMIDKLGEA 197
>gi|283786181|ref|YP_003366046.1| DNA repair protein [Citrobacter rodentium ICC168]
gi|282949635|emb|CBG89254.1| DNA repair protein [Citrobacter rodentium ICC168]
Length = 236
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 79/234 (33%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L+V T + GR + +S R + LQ + V +
Sbjct: 4 WQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL L R L L+ +
Sbjct: 63 RGEVKTLRNAEA---VSLALPLSGITLYSGLYVNELLARVLEHETRFSALFFDYLHCIQA 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + + EL LL ++G+G+D C +G D + +
Sbjct: 120 LAGVSGTPEPVLRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASVVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E DAD+L++A + T + AL+ + RE F
Sbjct: 180 NSTFTGRELRALAERDFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|168261370|ref|ZP_02683343.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|200388266|ref|ZP_03214878.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605364|gb|EDZ03909.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205349603|gb|EDZ36234.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 242
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|33152640|ref|NP_873993.1| DNA repair protein RecO [Haemophilus ducreyi 35000HP]
gi|42559454|sp|Q7VL77|RECO_HAEDU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|33148864|gb|AAP96382.1| DNA repair protein RecO [Haemophilus ducreyi 35000HP]
Length = 240
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 15/240 (6%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L R Y E +++++ T Q+GR + + R + +LQ + + W
Sbjct: 4 QWQ-RGFVLHRREYRETSLLVDFFTEQHGRITLLAKGAKRVRSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + + GL L R L + L+ +
Sbjct: 63 GKGDLKVLTKAEP---AALTLPMHHTALYSGLYVNEILIRVLENQTAYTALFQHYLQCIT 119
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
++ ++ E LLK +G+G++ + C TG D S L
Sbjct: 120 QLATQPEKLQVTLRTFEFHLLKALGYGVNFSICAATGQPIDAGMYYQFSE-NKGFFASLL 178
Query: 179 YAEKMLVLPSFLW-KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
L ++ D D+L++A + T + AL+ + RE F L
Sbjct: 179 RNHYTFCGKDLLAFEKGDFSDTDTLQAAKRFT-----RIALRPYLGSQPLKSRELFQAIL 233
>gi|206576021|ref|YP_002237092.1| DNA repair protein RecO [Klebsiella pneumoniae 342]
gi|288934054|ref|YP_003438113.1| DNA repair protein RecO [Klebsiella variicola At-22]
gi|290508250|ref|ZP_06547621.1| DNA repair protein RecO [Klebsiella sp. 1_1_55]
gi|238058670|sp|B5XNH2|RECO_KLEP3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|206565079|gb|ACI06855.1| DNA repair protein RecO [Klebsiella pneumoniae 342]
gi|288888783|gb|ADC57101.1| DNA repair protein RecO [Klebsiella variicola At-22]
gi|289777644|gb|EFD85641.1| DNA repair protein RecO [Klebsiella sp. 1_1_55]
Length = 245
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L+V T + GR + +S R + LQ + V +
Sbjct: 4 WQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL + R L EL+ +
Sbjct: 63 RGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQA 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL ++G+G+D C +G D + +
Sbjct: 120 LAGTSGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASLVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D D+L++A + T + AL+ + RE F
Sbjct: 180 NNTFTGHHLKALASREFPDVDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|291085017|ref|ZP_06351784.2| DNA repair protein RecO [Citrobacter youngae ATCC 29220]
gi|291071662|gb|EFE09771.1| DNA repair protein RecO [Citrobacter youngae ATCC 29220]
Length = 237
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 2 MEGWQ-RAFVLHSRPWSETSLVLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 61 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELISRVLEYETRFSELFFDYLNC 117
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G+D C +G D +
Sbjct: 118 IQALAGATGSPEPALRRFELALLGHLGYGVDFLHCAGSGDEVDDTMTYRYREEKGFIASV 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 178 VIDNNTFTGHQLKALANREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 229
>gi|152971421|ref|YP_001336530.1| DNA repair protein RecO [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|238896016|ref|YP_002920752.1| DNA repair protein RecO [Klebsiella pneumoniae NTUH-K2044]
gi|166221895|sp|A6TCH9|RECO_KLEP7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|150956270|gb|ABR78300.1| DNA repair protein RecO [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|238548334|dbj|BAH64685.1| DNA repair protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 245
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L+V T + GR + +S R + LQ + V +
Sbjct: 4 WQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL + R L EL+ +
Sbjct: 63 RGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQA 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL ++G+G+D C +G D + +
Sbjct: 120 LAGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASLVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D D+L++A + T + AL+ + RE F
Sbjct: 180 NNTFTGHHLKALASREFPDVDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|148260213|ref|YP_001234340.1| DNA repair protein RecO [Acidiphilium cryptum JF-5]
gi|254790500|sp|A5FXT9|RECO_ACICJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146401894|gb|ABQ30421.1| DNA repair protein RecO [Acidiphilium cryptum JF-5]
Length = 251
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 74/244 (30%), Positives = 113/244 (46%), Gaps = 4/244 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W + AI+L V ++GE ++ V+ +G G R G R PI Q GNL+ W +
Sbjct: 1 MEWSEPAIVLSVAAFGESDLRTIVLAETHGAWHGLARGGAGRRGAPIWQEGNLINARWVA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIFLN 119
RL + LG E++ A ++ L L L + LPERE + L L
Sbjct: 61 RLPEQLGSISGELVHPAAAIAMADPLALAVLRAACAVAAGALPEREAHRGAFIRLARLLG 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I V+ EL LL+ +G+GLDL+ C ++G +DL +VSP++G AV R +
Sbjct: 121 GIGIAGTALPALVRFELELLRELGYGLDLSSCALSGAAEDLAFVSPRTGRAVARGAAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
++L LP+FL E+ D L + LT +FL + A R + +L
Sbjct: 181 VPRLLKLPAFLLDEDAADDKADLAACRDGLALTGHFLARDAFGARHAPLPTARLDLYDRL 240
Query: 237 LELI 240
+
Sbjct: 241 TRRL 244
>gi|332344440|gb|AEE57774.1| DNA repair protein RecO [Escherichia coli UMNK88]
Length = 242
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IESLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|15803091|ref|NP_289122.1| DNA repair protein RecO [Escherichia coli O157:H7 EDL933]
gi|15832685|ref|NP_311458.1| DNA repair protein RecO [Escherichia coli O157:H7 str. Sakai]
gi|16130490|ref|NP_417060.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
gi|26248930|ref|NP_754970.1| DNA repair protein RecO [Escherichia coli CFT073]
gi|82777991|ref|YP_404340.1| DNA repair protein RecO [Shigella dysenteriae Sd197]
gi|89109371|ref|AP_003151.1| gap repair protein [Escherichia coli str. K-12 substr. W3110]
gi|91211891|ref|YP_541877.1| DNA repair protein RecO [Escherichia coli UTI89]
gi|110642727|ref|YP_670457.1| DNA repair protein RecO [Escherichia coli 536]
gi|117624786|ref|YP_853699.1| DNA repair protein RecO [Escherichia coli APEC O1]
gi|168748365|ref|ZP_02773387.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4113]
gi|168757774|ref|ZP_02782781.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4401]
gi|168761186|ref|ZP_02786193.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4501]
gi|168768669|ref|ZP_02793676.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4486]
gi|168773509|ref|ZP_02798516.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4196]
gi|168778542|ref|ZP_02803549.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4076]
gi|168787925|ref|ZP_02812932.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC869]
gi|168798947|ref|ZP_02823954.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC508]
gi|170019152|ref|YP_001724106.1| DNA repair protein RecO [Escherichia coli ATCC 8739]
gi|170082174|ref|YP_001731494.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
gi|188492218|ref|ZP_02999488.1| DNA repair protein RecO [Escherichia coli 53638]
gi|191174023|ref|ZP_03035540.1| DNA repair protein RecO [Escherichia coli F11]
gi|194437625|ref|ZP_03069721.1| DNA repair protein RecO [Escherichia coli 101-1]
gi|195936712|ref|ZP_03082094.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4024]
gi|208808195|ref|ZP_03250532.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4206]
gi|208813327|ref|ZP_03254656.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4045]
gi|208821700|ref|ZP_03262020.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4042]
gi|209396972|ref|YP_002272040.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4115]
gi|217327334|ref|ZP_03443417.1| DNA repair protein RecO [Escherichia coli O157:H7 str. TW14588]
gi|218559486|ref|YP_002392399.1| DNA repair protein RecO [Escherichia coli S88]
gi|218690681|ref|YP_002398893.1| DNA repair protein RecO [Escherichia coli ED1a]
gi|227887601|ref|ZP_04005406.1| recombination protein O [Escherichia coli 83972]
gi|237705075|ref|ZP_04535556.1| gap repair protein RecO [Escherichia sp. 3_2_53FAA]
gi|238901730|ref|YP_002927526.1| gap repair protein [Escherichia coli BW2952]
gi|253772536|ref|YP_003035367.1| DNA repair protein RecO [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162540|ref|YP_003045648.1| DNA repair protein RecO [Escherichia coli B str. REL606]
gi|254794515|ref|YP_003079352.1| DNA repair protein RecO [Escherichia coli O157:H7 str. TW14359]
gi|256021749|ref|ZP_05435614.1| DNA repair protein RecO [Escherichia sp. 4_1_40B]
gi|261222999|ref|ZP_05937280.1| gap repair protein [Escherichia coli O157:H7 str. FRIK2000]
gi|261259450|ref|ZP_05951983.1| gap repair protein [Escherichia coli O157:H7 str. FRIK966]
gi|291283840|ref|YP_003500658.1| DNA repair protein recO [Escherichia coli O55:H7 str. CB9615]
gi|293415834|ref|ZP_06658477.1| DNA repair protein RecO [Escherichia coli B185]
gi|300904251|ref|ZP_07122110.1| DNA repair protein RecO [Escherichia coli MS 84-1]
gi|300927691|ref|ZP_07143259.1| DNA repair protein RecO [Escherichia coli MS 187-1]
gi|300951717|ref|ZP_07165536.1| DNA repair protein RecO [Escherichia coli MS 116-1]
gi|300958794|ref|ZP_07170906.1| DNA repair protein RecO [Escherichia coli MS 175-1]
gi|300974163|ref|ZP_07172481.1| DNA repair protein RecO [Escherichia coli MS 200-1]
gi|300982269|ref|ZP_07175980.1| DNA repair protein RecO [Escherichia coli MS 45-1]
gi|301022061|ref|ZP_07185988.1| DNA repair protein RecO [Escherichia coli MS 196-1]
gi|301047204|ref|ZP_07194296.1| DNA repair protein RecO [Escherichia coli MS 185-1]
gi|301302932|ref|ZP_07209060.1| DNA repair protein RecO [Escherichia coli MS 124-1]
gi|301648329|ref|ZP_07248069.1| DNA repair protein RecO [Escherichia coli MS 146-1]
gi|306814371|ref|ZP_07448533.1| DNA repair protein RecO [Escherichia coli NC101]
gi|307139201|ref|ZP_07498557.1| DNA repair protein RecO [Escherichia coli H736]
gi|309784620|ref|ZP_07679255.1| DNA repair protein RecO [Shigella dysenteriae 1617]
gi|312973189|ref|ZP_07787361.1| DNA repair protein RecO [Escherichia coli 1827-70]
gi|331643189|ref|ZP_08344324.1| DNA repair protein RecO [Escherichia coli H736]
gi|331648311|ref|ZP_08349400.1| DNA repair protein RecO [Escherichia coli M605]
gi|331658709|ref|ZP_08359653.1| DNA repair protein RecO [Escherichia coli TA206]
gi|331664133|ref|ZP_08365043.1| DNA repair protein RecO [Escherichia coli TA143]
gi|67471982|sp|P0A7H3|RECO_ECOLI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67471983|sp|P0A7H4|RECO_ECOL6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67471984|sp|P0A7H5|RECO_ECO57 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|90103525|sp|Q32CV6|RECO_SHIDS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361457|sp|Q0TES3|RECO_ECOL5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361458|sp|Q1R8G8|RECO_ECOUT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221890|sp|A1AE95|RECO_ECOK1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189039656|sp|B1IVR2|RECO_ECOLC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737862|sp|B7MIQ0|RECO_ECO45 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229485533|sp|B1XB39|RECO_ECODH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238058644|sp|B5Z139|RECO_ECO5E RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|332138214|pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-Temrinus
gi|332138215|pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-Temrinus
gi|12516982|gb|AAG57680.1|AE005487_4 protein interacts with RecR and possibly RecF proteins [Escherichia
coli O157:H7 str. EDL933]
gi|26109336|gb|AAN81538.1|AE016764_220 DNA repair protein recO [Escherichia coli CFT073]
gi|147552|gb|AAA24515.1| recombination protein [Escherichia coli]
gi|499369|gb|AAA21842.1| recO [Escherichia coli]
gi|987640|dbj|BAA10912.1| recO protein [Escherichia coli K-12]
gi|2367140|gb|AAC75618.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
gi|13362902|dbj|BAB36854.1| RecO protein [Escherichia coli O157:H7 str. Sakai]
gi|81242139|gb|ABB62849.1| RecO [Shigella dysenteriae Sd197]
gi|85675456|dbj|BAE76741.1| gap repair protein [Escherichia coli str. K12 substr. W3110]
gi|91073465|gb|ABE08346.1| protein interacts with RecR and possibly RecF proteins [Escherichia
coli UTI89]
gi|110344319|gb|ABG70556.1| DNA repair protein RecO [Escherichia coli 536]
gi|115513910|gb|ABJ01985.1| gap repair protein RecO [Escherichia coli APEC O1]
gi|169754080|gb|ACA76779.1| DNA repair protein RecO [Escherichia coli ATCC 8739]
gi|169890009|gb|ACB03716.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
gi|187770738|gb|EDU34582.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4196]
gi|188017100|gb|EDU55222.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4113]
gi|188487417|gb|EDU62520.1| DNA repair protein RecO [Escherichia coli 53638]
gi|189003617|gb|EDU72603.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4076]
gi|189355304|gb|EDU73723.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4401]
gi|189362323|gb|EDU80742.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4486]
gi|189368475|gb|EDU86891.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4501]
gi|189372382|gb|EDU90798.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC869]
gi|189378575|gb|EDU96991.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC508]
gi|190905714|gb|EDV65336.1| DNA repair protein RecO [Escherichia coli F11]
gi|194423431|gb|EDX39422.1| DNA repair protein RecO [Escherichia coli 101-1]
gi|208727996|gb|EDZ77597.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4206]
gi|208734604|gb|EDZ83291.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4045]
gi|208741823|gb|EDZ89505.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4042]
gi|209158372|gb|ACI35805.1| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4115]
gi|209762898|gb|ACI79761.1| RecO protein [Escherichia coli]
gi|209762900|gb|ACI79762.1| RecO protein [Escherichia coli]
gi|209762902|gb|ACI79763.1| RecO protein [Escherichia coli]
gi|209762904|gb|ACI79764.1| RecO protein [Escherichia coli]
gi|209762906|gb|ACI79765.1| RecO protein [Escherichia coli]
gi|217319701|gb|EEC28126.1| DNA repair protein RecO [Escherichia coli O157:H7 str. TW14588]
gi|218366255|emb|CAR04002.1| gap repair protein [Escherichia coli S88]
gi|218428245|emb|CAR09162.2| gap repair protein [Escherichia coli ED1a]
gi|222034270|emb|CAP77011.1| DNA repair protein recO [Escherichia coli LF82]
gi|226901441|gb|EEH87700.1| gap repair protein RecO [Escherichia sp. 3_2_53FAA]
gi|227835951|gb|EEJ46417.1| recombination protein O [Escherichia coli 83972]
gi|238861284|gb|ACR63282.1| gap repair protein [Escherichia coli BW2952]
gi|242378166|emb|CAQ32940.1| protein interacts with RecR and possibly RecF proteins, subunit of
RecFOR complex [Escherichia coli BL21(DE3)]
gi|253323580|gb|ACT28182.1| DNA repair protein RecO [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974441|gb|ACT40112.1| DNA repair protein RecO [Escherichia coli B str. REL606]
gi|253978608|gb|ACT44278.1| DNA repair protein RecO [Escherichia coli BL21(DE3)]
gi|254593915|gb|ACT73276.1| gap repair protein [Escherichia coli O157:H7 str. TW14359]
gi|260448355|gb|ACX38777.1| DNA repair protein RecO [Escherichia coli DH1]
gi|281179614|dbj|BAI55944.1| DNA repair protein RecO [Escherichia coli SE15]
gi|290763713|gb|ADD57674.1| DNA repair protein recO [Escherichia coli O55:H7 str. CB9615]
gi|291433482|gb|EFF06461.1| DNA repair protein RecO [Escherichia coli B185]
gi|294489626|gb|ADE88382.1| DNA repair protein RecO [Escherichia coli IHE3034]
gi|299881366|gb|EFI89577.1| DNA repair protein RecO [Escherichia coli MS 196-1]
gi|300300881|gb|EFJ57266.1| DNA repair protein RecO [Escherichia coli MS 185-1]
gi|300308902|gb|EFJ63422.1| DNA repair protein RecO [Escherichia coli MS 200-1]
gi|300314542|gb|EFJ64326.1| DNA repair protein RecO [Escherichia coli MS 175-1]
gi|300403784|gb|EFJ87322.1| DNA repair protein RecO [Escherichia coli MS 84-1]
gi|300408823|gb|EFJ92361.1| DNA repair protein RecO [Escherichia coli MS 45-1]
gi|300449001|gb|EFK12621.1| DNA repair protein RecO [Escherichia coli MS 116-1]
gi|300464244|gb|EFK27737.1| DNA repair protein RecO [Escherichia coli MS 187-1]
gi|300841867|gb|EFK69627.1| DNA repair protein RecO [Escherichia coli MS 124-1]
gi|301073605|gb|EFK88411.1| DNA repair protein RecO [Escherichia coli MS 146-1]
gi|305851765|gb|EFM52217.1| DNA repair protein RecO [Escherichia coli NC101]
gi|307554584|gb|ADN47359.1| DNA repair protein RecO [Escherichia coli ABU 83972]
gi|307625887|gb|ADN70191.1| DNA repair protein RecO [Escherichia coli UM146]
gi|308927517|gb|EFP72989.1| DNA repair protein RecO [Shigella dysenteriae 1617]
gi|310331784|gb|EFP99019.1| DNA repair protein RecO [Escherichia coli 1827-70]
gi|315137189|dbj|BAJ44348.1| DNA repair protein recO [Escherichia coli DH1]
gi|315256593|gb|EFU36561.1| DNA repair protein RecO [Escherichia coli MS 85-1]
gi|315288042|gb|EFU47444.1| DNA repair protein RecO [Escherichia coli MS 110-3]
gi|315292459|gb|EFU51811.1| DNA repair protein RecO [Escherichia coli MS 153-1]
gi|315300508|gb|EFU59737.1| DNA repair protein RecO [Escherichia coli MS 16-3]
gi|320188906|gb|EFW63565.1| DNA recombination and repair protein RecO [Escherichia coli O157:H7
str. EC1212]
gi|320640814|gb|EFX10308.1| DNA repair protein RecO [Escherichia coli O157:H7 str. G5101]
gi|320646160|gb|EFX15100.1| DNA repair protein RecO [Escherichia coli O157:H- str. 493-89]
gi|320651455|gb|EFX19851.1| DNA repair protein RecO [Escherichia coli O157:H- str. H 2687]
gi|320657056|gb|EFX24875.1| DNA repair protein RecO [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320662721|gb|EFX30060.1| DNA repair protein RecO [Escherichia coli O55:H7 str. USDA 5905]
gi|320667541|gb|EFX34461.1| DNA repair protein RecO [Escherichia coli O157:H7 str. LSU-61]
gi|323188320|gb|EFZ73612.1| DNA repair protein RecO [Escherichia coli RN587/1]
gi|323949219|gb|EGB45110.1| recombination protein O [Escherichia coli H252]
gi|323955801|gb|EGB51559.1| recombination protein O [Escherichia coli H263]
gi|323961180|gb|EGB56793.1| recombination protein O [Escherichia coli H489]
gi|323971109|gb|EGB66356.1| recombination protein O [Escherichia coli TA007]
gi|324008474|gb|EGB77693.1| DNA repair protein RecO [Escherichia coli MS 57-2]
gi|324014390|gb|EGB83609.1| DNA repair protein RecO [Escherichia coli MS 60-1]
gi|326340371|gb|EGD64175.1| DNA recombination and repair protein RecO [Escherichia coli O157:H7
str. 1125]
gi|326345054|gb|EGD68798.1| DNA recombination and repair protein RecO [Escherichia coli O157:H7
str. 1044]
gi|330912334|gb|EGH40844.1| DNA recombination and repair protein RecO [Escherichia coli AA86]
gi|331039987|gb|EGI12207.1| DNA repair protein RecO [Escherichia coli H736]
gi|331042860|gb|EGI15001.1| DNA repair protein RecO [Escherichia coli M605]
gi|331054374|gb|EGI26401.1| DNA repair protein RecO [Escherichia coli TA206]
gi|331059932|gb|EGI31909.1| DNA repair protein RecO [Escherichia coli TA143]
Length = 242
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|215487909|ref|YP_002330340.1| DNA repair protein RecO [Escherichia coli O127:H6 str. E2348/69]
gi|215265981|emb|CAS10390.1| gap repair protein [Escherichia coli O127:H6 str. E2348/69]
Length = 242
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T CV +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCVGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|74313127|ref|YP_311546.1| DNA repair protein RecO [Shigella sonnei Ss046]
gi|157158543|ref|YP_001463888.1| DNA repair protein RecO [Escherichia coli E24377A]
gi|157162044|ref|YP_001459362.1| DNA repair protein RecO [Escherichia coli HS]
gi|170681019|ref|YP_001744754.1| DNA repair protein RecO [Escherichia coli SMS-3-5]
gi|191167983|ref|ZP_03029785.1| DNA repair protein RecO [Escherichia coli B7A]
gi|193064044|ref|ZP_03045129.1| DNA repair protein RecO [Escherichia coli E22]
gi|193068426|ref|ZP_03049389.1| DNA repair protein RecO [Escherichia coli E110019]
gi|194429295|ref|ZP_03061822.1| DNA repair protein RecO [Escherichia coli B171]
gi|194432090|ref|ZP_03064379.1| DNA repair protein RecO [Shigella dysenteriae 1012]
gi|209920044|ref|YP_002294128.1| DNA repair protein RecO [Escherichia coli SE11]
gi|218547907|ref|YP_002381698.1| DNA repair protein RecO [Escherichia fergusonii ATCC 35469]
gi|218555146|ref|YP_002388059.1| DNA repair protein RecO [Escherichia coli IAI1]
gi|218696193|ref|YP_002403860.1| DNA repair protein RecO [Escherichia coli 55989]
gi|218701079|ref|YP_002408708.1| DNA repair protein RecO [Escherichia coli IAI39]
gi|218706069|ref|YP_002413588.1| DNA repair protein RecO [Escherichia coli UMN026]
gi|260845250|ref|YP_003223028.1| gap repair protein RecO [Escherichia coli O103:H2 str. 12009]
gi|260856659|ref|YP_003230550.1| gap repair protein RecO [Escherichia coli O26:H11 str. 11368]
gi|293406007|ref|ZP_06649999.1| DNA repair protein recO [Escherichia coli FVEC1412]
gi|293410981|ref|ZP_06654557.1| DNA repair protein RecO [Escherichia coli B354]
gi|293446919|ref|ZP_06663341.1| DNA repair protein RecO [Escherichia coli B088]
gi|298381807|ref|ZP_06991406.1| DNA repair protein recO [Escherichia coli FVEC1302]
gi|300817658|ref|ZP_07097873.1| DNA repair protein RecO [Escherichia coli MS 107-1]
gi|300820756|ref|ZP_07100906.1| DNA repair protein RecO [Escherichia coli MS 119-7]
gi|300898320|ref|ZP_07116668.1| DNA repair protein RecO [Escherichia coli MS 198-1]
gi|300920733|ref|ZP_07137139.1| DNA repair protein RecO [Escherichia coli MS 115-1]
gi|300927058|ref|ZP_07142810.1| DNA repair protein RecO [Escherichia coli MS 182-1]
gi|301024852|ref|ZP_07188489.1| DNA repair protein RecO [Escherichia coli MS 69-1]
gi|301330333|ref|ZP_07222980.1| DNA repair protein RecO [Escherichia coli MS 78-1]
gi|307313864|ref|ZP_07593480.1| DNA repair protein RecO [Escherichia coli W]
gi|309794381|ref|ZP_07688804.1| DNA repair protein RecO [Escherichia coli MS 145-7]
gi|312965481|ref|ZP_07779713.1| DNA repair protein RecO [Escherichia coli 2362-75]
gi|331669315|ref|ZP_08370163.1| DNA repair protein RecO [Escherichia coli TA271]
gi|331678561|ref|ZP_08379236.1| DNA repair protein RecO [Escherichia coli H591]
gi|331684215|ref|ZP_08384811.1| DNA repair protein RecO [Escherichia coli H299]
gi|92087034|sp|Q3YYV1|RECO_SHISS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166918729|sp|A7ZQ09|RECO_ECO24 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166918730|sp|A8A375|RECO_ECOHS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737863|sp|B7NRL8|RECO_ECO7I RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737864|sp|B7M8H8|RECO_ECO8A RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737865|sp|B7N6F3|RECO_ECOLU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737866|sp|B1LP78|RECO_ECOSM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737867|sp|B7LUZ9|RECO_ESCF3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238058645|sp|B6I5D9|RECO_ECOSE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|73856604|gb|AAZ89311.1| protein interacts with RecR and possibly RecF proteins [Shigella
sonnei Ss046]
gi|157067724|gb|ABV06979.1| DNA repair protein RecO [Escherichia coli HS]
gi|157080573|gb|ABV20281.1| DNA repair protein RecO [Escherichia coli E24377A]
gi|170518737|gb|ACB16915.1| DNA repair protein RecO [Escherichia coli SMS-3-5]
gi|190901990|gb|EDV61737.1| DNA repair protein RecO [Escherichia coli B7A]
gi|192929279|gb|EDV82888.1| DNA repair protein RecO [Escherichia coli E22]
gi|192958378|gb|EDV88818.1| DNA repair protein RecO [Escherichia coli E110019]
gi|194412703|gb|EDX28998.1| DNA repair protein RecO [Escherichia coli B171]
gi|194419619|gb|EDX35699.1| DNA repair protein RecO [Shigella dysenteriae 1012]
gi|209913303|dbj|BAG78377.1| DNA repair protein RecO [Escherichia coli SE11]
gi|218352925|emb|CAU98724.1| gap repair protein [Escherichia coli 55989]
gi|218355448|emb|CAQ88057.1| gap repair protein [Escherichia fergusonii ATCC 35469]
gi|218361914|emb|CAQ99514.1| gap repair protein [Escherichia coli IAI1]
gi|218371065|emb|CAR18892.1| gap repair protein [Escherichia coli IAI39]
gi|218433166|emb|CAR14062.1| gap repair protein [Escherichia coli UMN026]
gi|257755308|dbj|BAI26810.1| gap repair protein RecO [Escherichia coli O26:H11 str. 11368]
gi|257760397|dbj|BAI31894.1| gap repair protein RecO [Escherichia coli O103:H2 str. 12009]
gi|284922515|emb|CBG35602.1| DNA repair protein [Escherichia coli 042]
gi|291323749|gb|EFE63177.1| DNA repair protein RecO [Escherichia coli B088]
gi|291428215|gb|EFF01242.1| DNA repair protein recO [Escherichia coli FVEC1412]
gi|291471449|gb|EFF13933.1| DNA repair protein RecO [Escherichia coli B354]
gi|298279249|gb|EFI20763.1| DNA repair protein recO [Escherichia coli FVEC1302]
gi|300357982|gb|EFJ73852.1| DNA repair protein RecO [Escherichia coli MS 198-1]
gi|300396383|gb|EFJ79921.1| DNA repair protein RecO [Escherichia coli MS 69-1]
gi|300412304|gb|EFJ95614.1| DNA repair protein RecO [Escherichia coli MS 115-1]
gi|300416942|gb|EFK00253.1| DNA repair protein RecO [Escherichia coli MS 182-1]
gi|300526509|gb|EFK47578.1| DNA repair protein RecO [Escherichia coli MS 119-7]
gi|300529646|gb|EFK50708.1| DNA repair protein RecO [Escherichia coli MS 107-1]
gi|300843667|gb|EFK71427.1| DNA repair protein RecO [Escherichia coli MS 78-1]
gi|306906365|gb|EFN36880.1| DNA repair protein RecO [Escherichia coli W]
gi|308121837|gb|EFO59099.1| DNA repair protein RecO [Escherichia coli MS 145-7]
gi|309702951|emb|CBJ02282.1| DNA repair protein [Escherichia coli ETEC H10407]
gi|312289901|gb|EFR17789.1| DNA repair protein RecO [Escherichia coli 2362-75]
gi|315061884|gb|ADT76211.1| gap repair protein [Escherichia coli W]
gi|320182110|gb|EFW57014.1| DNA recombination and repair protein RecO [Shigella boydii ATCC
9905]
gi|320196401|gb|EFW71025.1| DNA recombination and repair protein RecO [Escherichia coli
WV_060327]
gi|320200129|gb|EFW74718.1| DNA recombination and repair protein RecO [Escherichia coli
EC4100B]
gi|323156223|gb|EFZ42382.1| DNA repair protein RecO [Escherichia coli EPECa14]
gi|323159222|gb|EFZ45212.1| DNA repair protein RecO [Escherichia coli E128010]
gi|323167801|gb|EFZ53496.1| DNA repair protein RecO [Shigella sonnei 53G]
gi|323173117|gb|EFZ58748.1| DNA repair protein RecO [Escherichia coli LT-68]
gi|323184555|gb|EFZ69929.1| DNA repair protein RecO [Escherichia coli 1357]
gi|323377535|gb|ADX49803.1| DNA repair protein RecO [Escherichia coli KO11]
gi|323936305|gb|EGB32596.1| recombination protein O [Escherichia coli E1520]
gi|323944622|gb|EGB40690.1| recombination protein O [Escherichia coli H120]
gi|323968013|gb|EGB63425.1| recombination protein O [Escherichia coli M863]
gi|324020023|gb|EGB89242.1| DNA repair protein RecO [Escherichia coli MS 117-3]
gi|324118225|gb|EGC12121.1| recombination protein O [Escherichia coli E1167]
gi|327252275|gb|EGE63947.1| DNA repair protein RecO [Escherichia coli STEC_7v]
gi|331064509|gb|EGI36420.1| DNA repair protein RecO [Escherichia coli TA271]
gi|331075021|gb|EGI46341.1| DNA repair protein RecO [Escherichia coli H591]
gi|331079167|gb|EGI50369.1| DNA repair protein RecO [Escherichia coli H299]
gi|332088077|gb|EGI93202.1| DNA repair protein RecO [Shigella boydii 5216-82]
gi|332089248|gb|EGI94355.1| DNA repair protein RecO [Shigella dysenteriae 155-74]
gi|333000425|gb|EGK20007.1| DNA repair protein RecO [Shigella flexneri VA-6]
Length = 242
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|331654027|ref|ZP_08355028.1| DNA repair protein RecO [Escherichia coli M718]
gi|331048876|gb|EGI20952.1| DNA repair protein RecO [Escherichia coli M718]
Length = 242
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGGTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|205353675|ref|YP_002227476.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|238690509|sp|B5RD47|RECO_SALG2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|205273456|emb|CAR38433.1| DNA repair protein recO [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628779|gb|EGE35122.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 242
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +E + D D+L+++ + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEEREFPDVDTLRASKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|260771920|ref|ZP_05880838.1| DNA recombination and repair protein RecO [Vibrio metschnikovii CIP
69.14]
gi|260613212|gb|EEX38413.1| DNA recombination and repair protein RecO [Vibrio metschnikovii CIP
69.14]
Length = 241
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 11/228 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLNRRPYSESSLILDVFSEEYGRLTLMAKGARGKRSQLKGALQPFTPLLLKW---SGNS 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L P L+ L
Sbjct: 66 TMKTLRQAESISLGLPLSGISLYSAMYVNELVGRVLANDVPSPALFHDYLFALTELAQSD 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL ++G+G+D C TG +
Sbjct: 126 NPEPALRRFELALLSSLGYGVDFLHCAGTGEPITPTMTYRYREQKGFIASVRRDNLTFYG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + + L++A + T + AL+ + RE F
Sbjct: 186 DELIAISERRFTTKNQLQAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|295097902|emb|CBK86992.1| DNA replication and repair protein RecO [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 235
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L+V T + GR + +S R + LQ + V +
Sbjct: 4 WQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSRRSNLKGALQPFTPLLVRFGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL + R L EL+ +
Sbjct: 63 RGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQA 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + + EL LL ++G+G+D C +G + + +
Sbjct: 120 LAGATGTPEPVLRRFELALLGHLGYGVDFLHCAGSGDEVEDTMTYRYREEKGFIASVVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
E + DAD+L++A + T + AL+ + RE F
Sbjct: 180 NSTFTGRQLRALYEREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|307260994|ref|ZP_07542676.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|306869296|gb|EFN01091.1| DNA repair protein recO [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
Length = 240
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
W +L R Y E +++++ T ++GR + + + +LQ + + W
Sbjct: 4 NWH-RGFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPHSPLKAVLQPFTPLLLRWS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L + EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P I I E +LK +G+G++ + C TG + L
Sbjct: 120 RLATQPEKIESILRTFEFQMLKVLGYGVNFSICAATGDPVSPSMTYQFKENEGFIASLLR 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L +++ D +L++A + T + AL+ + RE F L
Sbjct: 180 NNASFLGKDLLAFEQLDFSDKATLQAAKRFT-----RIALKPYLGSQPLKSRELFQSVLP 234
Query: 238 ELI 240
+
Sbjct: 235 NKL 237
>gi|331674014|ref|ZP_08374777.1| DNA repair protein RecO [Escherichia coli TA280]
gi|331069287|gb|EGI40679.1| DNA repair protein RecO [Escherichia coli TA280]
Length = 242
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNTREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|333001658|gb|EGK21225.1| DNA repair protein RecO [Shigella flexneri K-272]
gi|333015934|gb|EGK35269.1| DNA repair protein RecO [Shigella flexneri K-227]
Length = 242
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFITSV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|323978405|gb|EGB73490.1| recombination protein O [Escherichia coli TW10509]
Length = 243
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 2 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 61 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 117
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 118 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 178 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 229
>gi|242240201|ref|YP_002988382.1| DNA repair protein RecO [Dickeya dadantii Ech703]
gi|242132258|gb|ACS86560.1| DNA repair protein RecO [Dickeya dadantii Ech703]
Length = 244
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN--GQSHRMQPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + ++ LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFTENEGRVRVLAKGARARRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L +L GL L R L L+
Sbjct: 60 WGGRGEVKTLRNAEP---VSLALPLHGALLYSGLYVNELLMRVLEFETDYSALFFDYLYC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + EL LL ++G+G+D C +G +
Sbjct: 117 LQQLAAAQGSPEPALRRFELALLAHLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D ++L++A + T + AL+ + RE F
Sbjct: 177 VVDNRSFTGRELQALAAREFPDMETLRAAKRFT-----RIALKPYLGPRPLKSRELF 228
>gi|167854944|ref|ZP_02477719.1| DNA repair protein RecO [Haemophilus parasuis 29755]
gi|167853901|gb|EDS25140.1| DNA repair protein RecO [Haemophilus parasuis 29755]
Length = 239
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L R Y E +++++ T +GR + + R + +LQ + + W
Sbjct: 4 QWQ-RGFVLHRREYSESSLLVDFFTENHGRITLLAKGVRRPRSPLKSVLQPFTPLLLKWT 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENHTAYPELFQHYLQCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P+ I I E LK +G+G+D C TG D + L
Sbjct: 120 KLASQPNEIEPILRTFEFQTLKALGYGVDFCHCAATGKPVDPKMSYQFRENEGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ + E + ++L+SA + T + AL+ + RE F L
Sbjct: 180 NNYTFIGKDLLAFAEMNFSEKETLQSAKRFT-----RIALKPYLGSAPLKSRELFQSVLP 234
Query: 238 ELI 240
+
Sbjct: 235 NRL 237
>gi|315615827|gb|EFU96459.1| DNA repair protein RecO [Escherichia coli 3431]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMSYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|24113907|ref|NP_708417.1| DNA repair protein RecO [Shigella flexneri 2a str. 301]
gi|30063967|ref|NP_838138.1| DNA repair protein RecO [Shigella flexneri 2a str. 2457T]
gi|42559468|sp|Q83QI6|RECO_SHIFL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|24053008|gb|AAN44124.1| RecO protein [Shigella flexneri 2a str. 301]
gi|30042223|gb|AAP17948.1| RecO protein [Shigella flexneri 2a str. 2457T]
gi|281601978|gb|ADA74962.1| DNA repair protein recO [Shigella flexneri 2002017]
gi|313648243|gb|EFS12687.1| DNA repair protein RecO [Shigella flexneri 2a str. 2457T]
gi|332753974|gb|EGJ84348.1| DNA repair protein RecO [Shigella flexneri 4343-70]
gi|332755801|gb|EGJ86159.1| DNA repair protein RecO [Shigella flexneri 2747-71]
gi|332761958|gb|EGJ92231.1| DNA repair protein RecO [Shigella flexneri K-671]
gi|332766566|gb|EGJ96771.1| DNA repair protein RecO [Shigella flexneri 2930-71]
gi|333000822|gb|EGK20394.1| DNA repair protein RecO [Shigella flexneri K-218]
gi|333016797|gb|EGK36123.1| DNA repair protein RecO [Shigella flexneri K-304]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGDTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDGTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|110806510|ref|YP_690030.1| DNA repair protein RecO [Shigella flexneri 5 str. 8401]
gi|123342607|sp|Q0T1U0|RECO_SHIF8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|110616058|gb|ABF04725.1| protein interacts with RecR and possibly RecF proteins [Shigella
flexneri 5 str. 8401]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDGTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|238920903|ref|YP_002934418.1| DNA repair protein RecO, [Edwardsiella ictaluri 93-146]
gi|238870472|gb|ACR70183.1| DNA repair protein RecO, putative [Edwardsiella ictaluri 93-146]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T +GR + +S R + LQ + + W
Sbjct: 4 WQ-RAFVLHARPYSETSLMLDTFTEGHGRVRLLAKGARSRRSLLKGALQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL L R L + L+ +
Sbjct: 63 RGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELLARVLEQETCYNALFFDYLHCIQH 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL +G+G+D C +G + +
Sbjct: 120 LAAHAGSPEPALRRFELALLAQLGYGVDFLHCAGSGEPVADTMTYRYRAEKGFIASLVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D +L++A + T + AL+ + RE F
Sbjct: 180 QLSFTGRDLKALASREFPDGATLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|300935698|ref|ZP_07150668.1| DNA repair protein RecO [Escherichia coli MS 21-1]
gi|300459132|gb|EFK22625.1| DNA repair protein RecO [Escherichia coli MS 21-1]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNVREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|330446943|ref|ZP_08310594.1| DNA repair protein RecO [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491134|dbj|GAA05091.1| DNA repair protein RecO [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 236
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 72/236 (30%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + +GR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSEDHGRLTLLSKGARRKRSNLKGTLQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + S + + L R L P +L+ L
Sbjct: 61 SGKG---AMPVLTHAEPISIGLPMRSYILYSAMYVNEILVRVLGNHTPYPQLFLDYLNVL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G+ + +
Sbjct: 118 RELAQADNPEPALRRFELSLLHHLGYGIDFLHCAGSGLGVEDDMTYNYREQQGFIASMKI 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ L++A + T + AL+ + RE F+
Sbjct: 178 GQMTFKGNELKAIAARCFETPEQLRAAKRFT-----RMALKPYLGSKPLKSRELFI 228
>gi|261867311|ref|YP_003255233.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261412643|gb|ACX82014.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 228
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 12/227 (5%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLG 67
L +SY E +++++++T +GR + ++ R + +LQ + + W R +
Sbjct: 2 LHRKSYSETSLLIDLLTEDFGRISVLAKGARAKRSMLKGVLQPFTPLLLRWSGRGELKIL 61
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ A L + G L R L +L+ L +
Sbjct: 62 TKAEP---AAIALPLQNIALYSGFYLNELLCRVLEPETAYPQLFQQYLQCLTQLAMNQQQ 118
Query: 128 -GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
E LL+ +G+G+D T C +G T + + +
Sbjct: 119 VEPALRTFEFQLLRTLGYGIDFTHCAGSGNTVEADMTYRYREEKGFIASLIKDNLTFYGR 178
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+++ + D L +A + T + AL+ + RE F
Sbjct: 179 ELLAFEQTRFDDPSILVAAKRFT-----RIALKPYLGDKPLKSRELF 220
>gi|82545017|ref|YP_408964.1| DNA repair protein RecO [Shigella boydii Sb227]
gi|187733291|ref|YP_001881344.1| DNA repair protein RecO [Shigella boydii CDC 3083-94]
gi|90103524|sp|Q31XS2|RECO_SHIBS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238691722|sp|B2TXX8|RECO_SHIB3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|81246428|gb|ABB67136.1| RecO [Shigella boydii Sb227]
gi|187430283|gb|ACD09557.1| DNA repair protein RecO [Shigella boydii CDC 3083-94]
gi|320186364|gb|EFW61098.1| DNA recombination and repair protein RecO [Shigella flexneri CDC
796-83]
gi|332092621|gb|EGI97693.1| DNA repair protein RecO [Shigella boydii 3594-74]
Length = 242
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|261340866|ref|ZP_05968724.1| DNA repair protein RecO [Enterobacter cancerogenus ATCC 35316]
gi|288317297|gb|EFC56235.1| DNA repair protein RecO [Enterobacter cancerogenus ATCC 35316]
Length = 236
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + V
Sbjct: 2 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVR 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 61 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHC 117
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G+D C +G + +
Sbjct: 118 IQALAGATGTPEPALRRFELALLGHLGYGVDFLHCAGSGEEVEDTMTYRYREEKGFIASI 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ E + DAD+L++A + T + AL+ + RE F
Sbjct: 178 VVDNSTFTGRHLRALYEREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELF 229
>gi|256017286|ref|ZP_05431151.1| DNA repair protein RecO [Shigella sp. D9]
gi|332278277|ref|ZP_08390690.1| DNA repair protein recO [Shigella sp. D9]
gi|332100629|gb|EGJ03975.1| DNA repair protein recO [Shigella sp. D9]
Length = 242
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A IL R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFILHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|219870404|ref|YP_002474779.1| DNA repair protein RecO [Haemophilus parasuis SH0165]
gi|254764635|sp|B8F3C9|RECO_HAEPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|219690608|gb|ACL31831.1| recombinational DNA repair protein (RecF pathway) [Haemophilus
parasuis SH0165]
Length = 239
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 13/243 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L R Y E +++++ T +GR + + R + +LQ + + W
Sbjct: 4 QWQ-RGFVLHRREYSESSLLVDFFTENHGRITLLAKGVRRPRSPLKSVLQPFTPLLLKWT 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G L R L EL+ +
Sbjct: 63 GKGDLKTLTKAEP---ASLTLPMQTLALYSGFYVNEVLARVLENHTAYPELFQHYLHCMT 119
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P+ I I E LK +G+G+D C TG D + L
Sbjct: 120 KLASQPNEIEPILRTFEFQTLKALGYGVDFCHCAATGKPVDPKMSYQFRENEGFIASLLQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ + E + ++L+SA + T + AL+ + RE F L
Sbjct: 180 NNYTFIGKDLLAFAEMDFSEKETLQSAKRFT-----RIALKPYLGSAPLKSRELFQSVLP 234
Query: 238 ELI 240
+
Sbjct: 235 NRL 237
>gi|296104240|ref|YP_003614386.1| DNA repair protein RecO [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295058699|gb|ADF63437.1| DNA repair protein RecO [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 235
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G+D C +G + +
Sbjct: 117 IQALAGATGSPEPALRRFELALLGHLGYGVDFLHCAGSGDEVEDGMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ E + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRQLRALYEREFPDQDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|324113092|gb|EGC07068.1| recombination protein O [Escherichia fergusonii B253]
Length = 242
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALHTREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|261820521|ref|YP_003258627.1| DNA repair protein RecO [Pectobacterium wasabiae WPP163]
gi|261604534|gb|ACX87020.1| DNA repair protein RecO [Pectobacterium wasabiae WPP163]
Length = 245
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 78/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSESDGRVRVLAKGARARRSSLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L L+
Sbjct: 60 WSGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHETNYSALFFDYLHC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+G+D C +G + +
Sbjct: 117 LQHLAAQDASPEPALRRFELALLSYLGYGVDFLHCAGSGESVADTMTYQYREERGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D +LK+A + T + AL+ + RE F
Sbjct: 177 VVDNKSFTGHELRSLASREFPDTGTLKAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|213613051|ref|ZP_03370877.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 242
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQLFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|253689438|ref|YP_003018628.1| DNA repair protein RecO [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756016|gb|ACT14092.1| DNA repair protein RecO [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 245
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSESDGRVRVLAKGARARRSSLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L L+
Sbjct: 60 WSGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHETNYSALFFDYLHC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+G+D C +G +
Sbjct: 117 LQHLAAQDASPEPALRRFELALLGYLGYGVDFLHCAGSGEPVADTMTYQYREERGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D +LK+A + T + AL+ + RE F
Sbjct: 177 VVDNKSFTGHELRSLASREFPDNGTLKAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|90580327|ref|ZP_01236134.1| DNA repair protein RecO [Vibrio angustum S14]
gi|90438629|gb|EAS63813.1| DNA repair protein RecO [Vibrio angustum S14]
Length = 236
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + +GR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSEDHGRLTLLSKGARRKRSNLKGTLQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ L S + + L R L P +L+ L
Sbjct: 61 SGKG---AMPVLTHAEPISIGLPLRSYILYSAMYVNEILVRVLGNHTPYPQLFLDYLNVL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G++ + +
Sbjct: 118 RELAQADNPEPALRRFELSLLHHLGYGIDFLHCAGSGLSVEDDMTYNYREQQGFIASMKI 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ + L++A + T + AL+ + RE F+
Sbjct: 178 GLLTFRGNELKAIAARRFETPEQLRAAKRFT-----RMALKPYLGSKPLKSRELFI 228
>gi|320176133|gb|EFW51200.1| DNA recombination and repair protein RecO [Shigella dysenteriae CDC
74-1112]
Length = 242
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LSS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSSITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|90412088|ref|ZP_01220095.1| DNA repair protein RecO [Photobacterium profundum 3TCK]
gi|90327066|gb|EAS43445.1| DNA repair protein RecO [Photobacterium profundum 3TCK]
Length = 236
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 75/236 (31%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + YGR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSEDYGRLTILSKGARRKRSNLKGTLQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + + + + + L R L P L+ L
Sbjct: 61 TGRGS---MKTLTHAEPISISLPMRGYILYSAFYLNEVLARVLENDTPYPVLFMDYLNAL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G+ D L + +
Sbjct: 118 RELVQADNPEPALRRFELALLHHLGYGIDFLHCAGSGLPVDDLMTYNYREQKGFIASMMT 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ D L++A + T + AL+ + RE F+
Sbjct: 178 GHLTFTGNQLLAIAARRFETPDQLRAAKRFT-----RIALKPYLGGKPLKSRELFI 228
>gi|325496355|gb|EGC94214.1| DNA repair protein RecO [Escherichia fergusonii ECD227]
Length = 242
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSILKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALHTREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|297581083|ref|ZP_06943008.1| DNA repair protein recO [Vibrio cholerae RC385]
gi|297534909|gb|EFH73745.1| DNA repair protein recO [Vibrio cholerae RC385]
Length = 241
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 10/221 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L C L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVACPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C TG + L
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTGEPVSPDMTYRYREQKGFIASVRRDNLTFLG 185
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
E + + L++A + T + AL+ +
Sbjct: 186 NELIAISERRFTSKEQLQAAKRFT-----RLALKPYLGGKP 221
>gi|312947136|gb|ADR27963.1| DNA repair protein RecO [Escherichia coli O83:H1 str. NRG 857C]
Length = 242
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R V LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLRSAEAVSLVLP---LSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|183599775|ref|ZP_02961268.1| hypothetical protein PROSTU_03283 [Providencia stuartii ATCC 25827]
gi|188022039|gb|EDU60079.1| hypothetical protein PROSTU_03283 [Providencia stuartii ATCC 25827]
Length = 242
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 75/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++++ T G+ + + +R + LQ + + W
Sbjct: 4 WQ-RAFVLHSRPFSETSLLVDFFTEGEGKIRLLAKGARRNRSPFRGCLQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + L+ ++ GL + R + P L+ L
Sbjct: 63 KGEIKTLTHADP---ISLSLPLTGTVLYSGLYLNELVTRVIEFGTPYSALFFDYLSCLQL 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL LL +G+G+D C +G +
Sbjct: 120 LAASEHTPEAALRQFELALLSYLGYGVDFLHCAGSGEPVSDTMTYRYREEKGFIGSLVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D+D+L++A + T + AL+ + RE F
Sbjct: 180 QLSFTGKHLKALAAREFPDSDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|89075086|ref|ZP_01161527.1| DNA repair protein RecO [Photobacterium sp. SKA34]
gi|89049173|gb|EAR54738.1| DNA repair protein RecO [Photobacterium sp. SKA34]
Length = 236
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + +GR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHSRPYSETSLILDVFSEDHGRLTLLSKGARRKRSNLKGTLQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ L S + + L R L P +L+ L
Sbjct: 61 SGKG---AMPVLTHAEPISIGLPLRSYILYSAMYVNEILVRVLGNHTPYPQLFLDYLNVL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G++ + +
Sbjct: 118 RELAQADNPEPALRRFELSLLHHLGYGIDFLHCAGSGLSVEDNMTYNYREQQGFIASMKI 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ + L++A + T + AL+ + RE F+
Sbjct: 178 GLLTFRGNELKAIAARRFETPEQLRAAKRFT-----RMALKPYLGSKPLKSRELFI 228
>gi|269140065|ref|YP_003296766.1| DNA repair protein [Edwardsiella tarda EIB202]
gi|267985726|gb|ACY85555.1| DNA repair protein [Edwardsiella tarda EIB202]
gi|304559893|gb|ADM42557.1| DNA recombination and repair protein RecO [Edwardsiella tarda
FL6-60]
Length = 242
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T +GR + +S R + LQ + + W
Sbjct: 4 WQ-RAFVLHARPYSETSLMLDTFTEGHGRVRLLAKGARSRRSLLKGALQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS GL L R L + L+ +
Sbjct: 63 RGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELLARVLEQETCYSALFFDYLHCIQH 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL +G+G+D C +G + +
Sbjct: 120 LAAHAGSPEPALRRFELALLTQLGYGVDFLHCAGSGEPVADTMTYRYREEKGFIASLVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D +L++A + T + AL+ + RE F
Sbjct: 180 QLSFTGRDLKALASREFPDGATLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|300311262|ref|YP_003775354.1| DNA repair protein [Herbaspirillum seropedicae SmR1]
gi|300074047|gb|ADJ63446.1| DNA repair protein [Herbaspirillum seropedicae SmR1]
Length = 286
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 79/234 (33%), Gaps = 10/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V +R +GR + + +++ LQ + ++W +
Sbjct: 58 PGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSE 117
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L S L G L + L + L+D LN
Sbjct: 118 VRT---LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAH 174
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ Q E +LLK G + + CVV+G T + R L
Sbjct: 175 GENAPIVLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPK 234
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGKL 236
+ + L E + + QL FL +Y L H+ R+ + +
Sbjct: 235 VSGKTLLDMEREDYSDPT----TQLQSKFLMRYLLAHHLGGAQLNTRQILIDLM 284
>gi|227112905|ref|ZP_03826561.1| DNA repair protein RecO [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328579|ref|ZP_03832603.1| DNA repair protein RecO [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 245
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSESDGRVRVLAKGARARRSSLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L L+
Sbjct: 60 WSGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHETNYSALFFDYLHC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+G+D C +G +
Sbjct: 117 LQHLAAQDASPEPALRRFELALLGYLGYGVDFLHCAGSGEPVADTMTYQYREERGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D +LK+A + T + AL+ + RE F
Sbjct: 177 VVDNKSFTGHELRSLASREFPDVGTLKAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|311278502|ref|YP_003940733.1| DNA repair protein RecO [Enterobacter cloacae SCF1]
gi|308747697|gb|ADO47449.1| DNA repair protein RecO [Enterobacter cloacae SCF1]
Length = 242
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 78/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARAKRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL + R L EL+
Sbjct: 60 FGGRGDVKTLR---SAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G+D C +G D +
Sbjct: 117 IQALAGATRSPEPALRRFELALLGHLGYGVDFLHCAGSGEEVDDGMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 177 VIDNSTFTGRQLKALDAREFPDVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|260869252|ref|YP_003235654.1| gap repair protein RecO [Escherichia coli O111:H- str. 11128]
gi|257765608|dbj|BAI37103.1| gap repair protein RecO [Escherichia coli O111:H- str. 11128]
gi|323177305|gb|EFZ62893.1| DNA repair protein RecO [Escherichia coli 1180]
Length = 242
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFTCM-----ALKPYLGGKPLKSRELF 228
>gi|317491020|ref|ZP_07949456.1| recombination protein O [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920567|gb|EFV41890.1| recombination protein O [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 242
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T +GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFTEGHGRVRLLAKGARSKRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W + L+ GL + R L + L+
Sbjct: 60 WGGKGEVKTLRNAEP---VSLGLPLTGISLYSGLYVNELVSRVLEQETNYSSLFFDYLNC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + EL LL N+G+G+D C +G +
Sbjct: 117 LQNLAATVGSPEHTLREFELALLGNLGYGIDFLHCAGSGEPVSDDMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L E + D +L++A + T + AL+ + RE F
Sbjct: 177 LVDQLSFTGRDLKALAERRFPDPITLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|52424294|ref|YP_087431.1| DNA repair protein RecO [Mannheimia succiniciproducens MBEL55E]
gi|81609676|sp|Q65W14|RECO_MANSM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|52306346|gb|AAU36846.1| RecO protein [Mannheimia succiniciproducens MBEL55E]
Length = 228
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 12/234 (5%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLG 67
L + Y E ++++++ T + GR + ++ R + +LQ + + W + + +
Sbjct: 2 LHRKPYSETSLLVDLFTEESGRLTVLAKGARAKRSALKSVLQPFTPLLLRWTGKSSLKIL 61
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ A L + G + R + P +L+ L +
Sbjct: 62 TKAEP---AAIALPLQQTALFSGFYVNELITRVIEPETPNPQLFQDYLHCLTSLAVSQNF 118
Query: 128 -GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ E LL +G+G+D C +G D + +
Sbjct: 119 VEPALREFEFKLLNILGYGVDFLHCAGSGEPVDENMTYRYREEKGFIASLIKDNLTFFGR 178
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLEL 239
++ + + L++A + T + AL+ + + RE F +L L
Sbjct: 179 ELIAFERQDFSEKSVLQAAKRFT-----RVALKPYLGNKPLKSRELFTQTILHL 227
>gi|50122198|ref|YP_051365.1| DNA repair protein RecO [Pectobacterium atrosepticum SCRI1043]
gi|61214937|sp|Q6D221|RECO_ERWCT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|49612724|emb|CAG76174.1| DNA repair protein [Pectobacterium atrosepticum SCRI1043]
Length = 245
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSESDGRVRVLAKGARARRSSLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L L+
Sbjct: 60 WSGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLARVLEHETNYSALFFDYLHC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+G+D C +G +
Sbjct: 117 LQHLAAQDASPEPALRRFELALLGYLGYGVDFLHCAGSGEPVADTMTYQYREERGFTASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + D +LK+A + T + AL+ + RE F
Sbjct: 177 VVDNKSFTGHELHSLASREFPDVGTLKAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|1033154|gb|AAA79827.1| CG Site No. 17962 [Escherichia coli str. K-12 substr. MG1655]
Length = 242
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVXKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VIDNKTFTGRQLKALNAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|238753922|ref|ZP_04615282.1| DNA repair protein recO [Yersinia ruckeri ATCC 29473]
gi|238707910|gb|EEQ00268.1| DNA repair protein recO [Yersinia ruckeri ATCC 29473]
Length = 243
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPYSETSLMLDLFTEGEGRMRVLAKGARSRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS ++ GL L R L L+
Sbjct: 60 WAGRGEVKTLRSAEP---VSLALPLSGTMLYSGLYVNELLSRVLEHGTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + Q EL +L ++G+G+D C +G +
Sbjct: 117 LQALAATDGSPECVLRQFELAMLASLGYGVDFLHCAGSGQPVADSMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + D+D+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLQALANREFPDSDTLRAAKRFT-----RMALRPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|54310185|ref|YP_131205.1| DNA repair protein RecO [Photobacterium profundum SS9]
gi|61215025|sp|Q6LMS4|RECO_PHOPR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|46914626|emb|CAG21403.1| putative DNA repair protein RecO [Photobacterium profundum SS9]
Length = 236
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 11/242 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +L R Y E ++IL+V + YGR + + R + LQ + + W
Sbjct: 1 MEGLQRCFVLHYRPYSETSLILDVFSEDYGRLTILSKGARRKRSNLKGTLQPFTPLFMKW 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + + + + + L R L P L+ L
Sbjct: 61 TGRGS---MKTLTHAEPISISLPMRGYILYSAFYLNEVLVRVLENDTPYPVLFMDYLNAL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL ++G+G+D C +G+ D L + +
Sbjct: 118 RELAQADNPEPALRRFELALLHHLGYGIDFLHCAGSGLPIDDLMTYHYREQKGFIASMMT 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ D LK+A + T + AL+ + RE F+ +
Sbjct: 178 GHFTFTGNQLLAIAARRFETPDQLKAAKRFT-----RIALKPYLGGKPLKSRELFIPRTR 232
Query: 238 EL 239
+
Sbjct: 233 NI 234
>gi|209695941|ref|YP_002263871.1| DNA repair protein RecO [Aliivibrio salmonicida LFI1238]
gi|238058640|sp|B6EKM7|RECO_ALISL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|208009894|emb|CAQ80207.1| DNA repair protein RecO (recombination protein O) [Aliivibrio
salmonicida LFI1238]
Length = 238
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 12/237 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + +LQA + + W + +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ A L+ L + R + + P L+ L
Sbjct: 67 -MRTLRQAETISLAIPLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTELAQTK 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ EL LL ++G+G+D C + + + + S+
Sbjct: 126 NPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSPEMTYRYREQKGFMASIRHDPLMSFK 185
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLELI 240
E + I + LK+A + T + AL+ + RE FL + ++
Sbjct: 186 GDELIAISERRFITPEQLKAAKRFT-----RIALKPYLGGKPLKSRELFLPRTRSIL 237
>gi|268593248|ref|ZP_06127469.1| DNA repair protein RecO [Providencia rettgeri DSM 1131]
gi|291311143|gb|EFE51596.1| DNA repair protein RecO [Providencia rettgeri DSM 1131]
Length = 242
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 74/234 (31%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T G+ + + +R + LQ + + W
Sbjct: 4 WQ-RAFVLHSRPYSETSLLLDFFTEGEGKIRLLAKGARRNRSPLRGCLQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A L+ ++ GL R L P L+ L
Sbjct: 63 KGEIKTLINADP---VSLALPLTGTVLYSGLYLNELTARVLEFGTPYSSLFFDYLSCLQI 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL +G+G+D C +G +
Sbjct: 120 LAASEHTPEFALRRFELALLSYLGYGVDFLHCAGSGEPVSDTMTYRYREEKGFIGSLVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ DAD+LK+A + T + AL+ + RE F
Sbjct: 180 QLSFTGKQLKALASREFPDADTLKAAKRFT-----RLALKPYLGGKPLKSRELF 228
>gi|326402842|ref|YP_004282923.1| DNA repair protein RecO [Acidiphilium multivorum AIU301]
gi|325049703|dbj|BAJ80041.1| DNA repair protein RecO [Acidiphilium multivorum AIU301]
Length = 251
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 113/244 (46%), Gaps = 4/244 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W + AI+L V ++GE ++ V+ +G G R G R PI Q GNL+ W +
Sbjct: 1 MEWSEPAIVLSVAAFGESDLRTIVLAETHGAWHGLARGGAGRRGAPIWQEGNLINARWVA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIFLN 119
RL + LG E++ A ++ L L L + LPERE + L L
Sbjct: 61 RLPEQLGSISGELVHPAAAIAMADPLALAVLRAACAVAAGALPEREAHRGAFIRLARLLG 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I V+ EL LL+ +G+GLDL+ C ++G +DL +VSP++G AV R +
Sbjct: 121 GIGIAGTALPALVRFELELLRELGYGLDLSSCALSGAAEDLAFVSPRTGRAVARGAAGDW 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
A ++L LP+FL E+ D L + LT +FL + A R +L
Sbjct: 181 APRLLKLPAFLLDEDAADDEADLAACRDGLALTGHFLARDAFGARHAPLPTARLGLYDRL 240
Query: 237 LELI 240
+
Sbjct: 241 TRRL 244
>gi|294637609|ref|ZP_06715889.1| DNA repair protein RecO [Edwardsiella tarda ATCC 23685]
gi|291089239|gb|EFE21800.1| DNA repair protein RecO [Edwardsiella tarda ATCC 23685]
Length = 243
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 73/234 (31%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T GR + +S R + LQ + + W
Sbjct: 5 WQ-RAFVLHARPYSETSLLLDTFTEGQGRVRLLAKGARSRRSQLKGALQPFTPLLIRWGG 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A LS GL L R L + L+ +
Sbjct: 64 KGEVKTLR---SAEAVSLALPLSGITLYSGLYVNELLARVLEQETCYSALFFDYLHCIQQ 120
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + EL LL +G+G+D C +G + +
Sbjct: 121 LAGHSGSPEPVLRRFELALLAQLGYGIDFLHCAGSGEPVADGMTYRYREEKGFIASLVVD 180
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D +L++A + T + AL+ + RE F
Sbjct: 181 QHSFTGRDLKALASREFPDVATLRAAKRFT-----RMALKPYLGGKPLKSRELF 229
>gi|307132116|ref|YP_003884132.1| gap repair protein [Dickeya dadantii 3937]
gi|306529645|gb|ADM99575.1| gap repair protein [Dickeya dadantii 3937]
Length = 244
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSENEGRVRVLAKGARARRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS L GL L R L L+
Sbjct: 60 WGGRGEVKTLRNAEP---VSLALPLSGPLLYSGLYVNELLTRVLELETDYSALFFDYLHC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + EL LL+++G+G+D C +G +
Sbjct: 117 LQQLAAASGSPEPALRRFELALLEHLGYGVDFLHCAGSGEPVADTMTYRYRAEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 177 VVDNVSFTGRELQALASREFPDIDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|194017652|ref|ZP_03056262.1| DNA repair protein RecO [Bacillus pumilus ATCC 7061]
gi|194010552|gb|EDW20124.1| DNA repair protein RecO [Bacillus pumilus ATCC 7061]
Length = 256
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L YGE N I+ ++TR++G+ R + + + + +
Sbjct: 1 MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + LG + E++ES L Y L + E++P L+++L L
Sbjct: 61 QSSTGLGTLQQGEMIESMRTIREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +E+ +L +G +L +CV G + S + G +C++
Sbjct: 121 HLNEGTDADVILFIVEVKMLSVMGMKPELDQCVHCGQKEGQFHFSIRDNGFICQNCFSK 179
>gi|238759684|ref|ZP_04620844.1| DNA repair protein recO [Yersinia aldovae ATCC 35236]
gi|238702112|gb|EEP94669.1| DNA repair protein recO [Yersinia aldovae ATCC 35236]
Length = 244
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 4 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRIRVLAKGARGRRSNLKGCLQPFTPLLVR 62
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L + L+
Sbjct: 63 WAGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHC 119
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 120 LQALAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGEAVADTMTYRYREEKGFIASL 179
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DA++L++A + T + AL+ + RE F
Sbjct: 180 VVDHYSFTGRQLLALANREFPDAETLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 234
Query: 236 LLE 238
+++
Sbjct: 235 VIK 237
>gi|157693027|ref|YP_001487489.1| DNA repair protein RecO [Bacillus pumilus SAFR-032]
gi|166918728|sp|A8FFB2|RECO_BACP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157681785|gb|ABV62929.1| DNA repair protein RecO [Bacillus pumilus SAFR-032]
Length = 256
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L YGE N I+ ++TR++G+ R + + + + +
Sbjct: 1 MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + LG + E++ES L Y L + E++P L+++L L
Sbjct: 61 QSSTGLGTLQQGEMIESMRTIREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +E+ +L +G +L +CV G + S + G +C++
Sbjct: 121 HLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEGQFHFSIRDNGFICQNCFSK 179
>gi|21958064|gb|AAM84873.1|AE013732_5 recO protein [Yersinia pestis KIM 10]
gi|45437170|gb|AAS62722.1| DNA repair protein [Yersinia pestis biovar Microtus str. 91001]
Length = 243
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 80/240 (33%), Gaps = 13/240 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L++ T GR + + R + LQ + V W
Sbjct: 6 WQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWSG 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS S+ GL L R L + L+ L
Sbjct: 65 RGEVKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEHQTSYSALFFDYLHCLQA 121
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL +L N+G+G+D C +G + +
Sbjct: 122 LAGSDGSPEHALRQFELAMLANLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASLVVD 181
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ DAD+L++A + T + AL+ + RE F +++
Sbjct: 182 HYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQFVIK 236
>gi|51597204|ref|YP_071395.1| DNA repair protein RecO [Yersinia pseudotuberculosis IP 32953]
gi|108808448|ref|YP_652364.1| DNA repair protein RecO [Yersinia pestis Antiqua]
gi|108811371|ref|YP_647138.1| DNA repair protein RecO [Yersinia pestis Nepal516]
gi|145598835|ref|YP_001162911.1| DNA repair protein RecO [Yersinia pestis Pestoides F]
gi|149365388|ref|ZP_01887423.1| DNA repair protein [Yersinia pestis CA88-4125]
gi|153948747|ref|YP_001400119.1| DNA repair protein RecO [Yersinia pseudotuberculosis IP 31758]
gi|161484839|ref|NP_668622.2| DNA repair protein RecO [Yersinia pestis KIM 10]
gi|161511351|ref|NP_993845.2| DNA repair protein RecO [Yersinia pestis biovar Microtus str.
91001]
gi|162420369|ref|YP_001607937.1| DNA repair protein RecO [Yersinia pestis Angola]
gi|165925301|ref|ZP_02221133.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165937188|ref|ZP_02225753.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
IP275]
gi|166008243|ref|ZP_02229141.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212406|ref|ZP_02238441.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399560|ref|ZP_02305084.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421237|ref|ZP_02312990.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423802|ref|ZP_02315555.1| DNA repair protein RecO [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167467392|ref|ZP_02332096.1| DNA repair protein RecO [Yersinia pestis FV-1]
gi|170023437|ref|YP_001719942.1| DNA repair protein RecO [Yersinia pseudotuberculosis YPIII]
gi|186896301|ref|YP_001873413.1| DNA repair protein RecO [Yersinia pseudotuberculosis PB1/+]
gi|218929792|ref|YP_002347667.1| DNA repair protein RecO [Yersinia pestis CO92]
gi|229838283|ref|ZP_04458442.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895521|ref|ZP_04510692.1| gap repair protein [Yersinia pestis Pestoides A]
gi|229898847|ref|ZP_04513992.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229901621|ref|ZP_04516743.1| gap repair protein [Yersinia pestis Nepal516]
gi|270489810|ref|ZP_06206884.1| DNA repair protein RecO [Yersinia pestis KIM D27]
gi|294504511|ref|YP_003568573.1| DNA repair protein RecO [Yersinia pestis Z176003]
gi|20139503|sp|Q8ZD70|RECO_YERPE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|61214871|sp|Q667V3|RECO_YERPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361499|sp|Q1C553|RECO_YERPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361500|sp|Q1CKE2|RECO_YERPN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221917|sp|A4TKX6|RECO_YERPP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166918733|sp|A7FFU1|RECO_YERP3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238687296|sp|A9R404|RECO_YERPG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238688564|sp|B1JRC9|RECO_YERPY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238691450|sp|B2KA45|RECO_YERPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|51590486|emb|CAH22126.1| DNA repair protein [Yersinia pseudotuberculosis IP 32953]
gi|108775019|gb|ABG17538.1| DNA replication and repair protein RecO [Yersinia pestis Nepal516]
gi|108780361|gb|ABG14419.1| DNA replication and repair protein RecO [Yersinia pestis Antiqua]
gi|115348403|emb|CAL21339.1| DNA repair protein [Yersinia pestis CO92]
gi|145210531|gb|ABP39938.1| DNA replication and repair protein RecO [Yersinia pestis Pestoides
F]
gi|149291801|gb|EDM41875.1| DNA repair protein [Yersinia pestis CA88-4125]
gi|152960242|gb|ABS47703.1| DNA repair protein RecO [Yersinia pseudotuberculosis IP 31758]
gi|162353184|gb|ABX87132.1| DNA repair protein RecO [Yersinia pestis Angola]
gi|165915051|gb|EDR33663.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922908|gb|EDR40059.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992625|gb|EDR44926.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206337|gb|EDR50817.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960726|gb|EDR56747.1| DNA repair protein RecO [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167052064|gb|EDR63472.1| DNA repair protein RecO [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057972|gb|EDR67718.1| DNA repair protein RecO [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169749971|gb|ACA67489.1| DNA repair protein RecO [Yersinia pseudotuberculosis YPIII]
gi|186699327|gb|ACC89956.1| DNA repair protein RecO [Yersinia pseudotuberculosis PB1/+]
gi|229681550|gb|EEO77644.1| gap repair protein [Yersinia pestis Nepal516]
gi|229688395|gb|EEO80466.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229694649|gb|EEO84696.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701327|gb|EEO89355.1| gap repair protein [Yersinia pestis Pestoides A]
gi|262362497|gb|ACY59218.1| DNA repair protein RecO [Yersinia pestis D106004]
gi|262366498|gb|ACY63055.1| DNA repair protein RecO [Yersinia pestis D182038]
gi|270338314|gb|EFA49091.1| DNA repair protein RecO [Yersinia pestis KIM D27]
gi|294354970|gb|ADE65311.1| DNA repair protein RecO [Yersinia pestis Z176003]
gi|320016073|gb|ADV99644.1| gap repair protein [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 241
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 80/240 (33%), Gaps = 13/240 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L++ T GR + + R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS S+ GL L R L + L+ L
Sbjct: 63 RGEVKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEHQTSYSALFFDYLHCLQA 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL +L N+G+G+D C +G + +
Sbjct: 120 LAGSDGSPEHALRQFELAMLANLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASLVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ DAD+L++A + T + AL+ + RE F +++
Sbjct: 180 HYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQFVIK 234
>gi|109900011|ref|YP_663266.1| DNA repair protein RecO [Pseudoalteromonas atlantica T6c]
gi|119361472|sp|Q15PH6|RECO_PSEA6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|109702292|gb|ABG42212.1| DNA replication and repair protein RecO [Pseudoalteromonas
atlantica T6c]
Length = 240
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 11/229 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
+L R+Y E + ++ + T + G+ V+ + + + +LQ + + R
Sbjct: 8 GYVLHRRAYRETSFLVNIFTLENGKVSAVVKGVRGSKSDKKSLLQPFQPLLIGVSGRSEL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L+ L L R L + P E++ + ++
Sbjct: 68 KNLQQVEST---GAMIRLAGQALYCALYLNEVLNRVLADEIPHPEIFVLYQQSMHALVAQ 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ + EL LL +G+G+DLT TG C G
Sbjct: 125 TNFEPVLRSFELGLLDALGYGIDLTHDADTGQPVADNGYYRIVPELGCVYQGDIRLSGCY 184
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENF 232
S L + D DSL +A +T + L + L RE F
Sbjct: 185 SGQSLLNVASENWDKDSLLAAKHIT-----RTTLGELLGSKPLMSRELF 228
>gi|212710661|ref|ZP_03318789.1| hypothetical protein PROVALCAL_01727 [Providencia alcalifaciens DSM
30120]
gi|212686742|gb|EEB46270.1| hypothetical protein PROVALCAL_01727 [Providencia alcalifaciens DSM
30120]
Length = 241
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 77/239 (32%), Gaps = 13/239 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++++ T G+ + + +R + LQ + + W
Sbjct: 4 WQ-RAFVLHSRPYSETSLLIDFFTEGEGKIRLLAKGARRNRSPLRGCLQPFTPLLIRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A LS ++ GL R + P L+ L
Sbjct: 63 KGEIKTLINADP---VSLALPLSGTVLYSGLYLNELTARVIEFGTPYSSLFFDYLNCLQV 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL LL +G+G+D C +G +
Sbjct: 120 LAGSERTPESALRQFELALLSYLGYGVDFLHCAGSGEPVTDAMTYRYREEKGFIGSLVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
E + DAD+LK+A + T + AL+ + RE F ++
Sbjct: 180 QLTFTGKQLKALAEREFPDADTLKAAKRFT-----RIALKPYLGGKPLKSRELFRQFII 233
>gi|251788700|ref|YP_003003421.1| DNA repair protein RecO [Dickeya zeae Ech1591]
gi|247537321|gb|ACT05942.1| DNA repair protein RecO [Dickeya zeae Ech1591]
Length = 244
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSEDEGRVRVLAKGARARRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS SL GL L R L L+
Sbjct: 60 WGGRGEVKTLRNAEP---VSLALPLSGSLLYSGLYVNELLTRVLELETNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL+++G+G+D C +G +
Sbjct: 117 LQQLAAANGSPEPALRRFELALLEHLGYGVDFLHCAGSGEPVADTMTYRYRSEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D ++L++A + T + AL+ + RE F
Sbjct: 177 VVDNVSFTGRELQALASREFPDIETLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|59712692|ref|YP_205468.1| DNA repair protein RecO [Vibrio fischeri ES114]
gi|197335983|ref|YP_002156884.1| DNA repair protein RecO [Vibrio fischeri MJ11]
gi|67461219|sp|Q5E316|RECO_VIBF1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238690260|sp|B5FAG8|RECO_VIBFM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|59480793|gb|AAW86580.1| gap repair protein [Vibrio fischeri ES114]
gi|197317473|gb|ACH66920.1| DNA repair protein RecO [Vibrio fischeri MJ11]
Length = 238
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 12/237 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + +LQA + + W + +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ + L R + + P L+ L +
Sbjct: 67 -MRTLRQAETISLGIPLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL +G+G+D C +G +
Sbjct: 126 NPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSPEMTYRYREQQGFMASIRHDPLMSFK 185
Query: 186 LPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLELI 240
+ E + + LK+A + T + AL+ + RE FL + ++
Sbjct: 186 GNELIAISERRFTTPEQLKAAKRFT-----RIALKPYLGGKPLKSRELFLPRTRSIL 237
>gi|170767492|ref|ZP_02901945.1| DNA repair protein RecO [Escherichia albertii TW07627]
gi|170123826|gb|EDS92757.1| DNA repair protein RecO [Escherichia albertii TW07627]
Length = 243
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 2 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R + A LS GL L R L EL+
Sbjct: 61 FGGRGE---IKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 117
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + EL LL ++G+G++ C +G D +
Sbjct: 118 IQSLAGATGTPEPALRRFELALLGHLGYGVNFMHCAGSGEPVDDTMTYRYREEKGFIASV 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + DAD+L++A + T + AL+ + RE F
Sbjct: 178 VIDNKTFTGRQLKALHAREFPDADTLRAAKRFT-----RMALKPYLGGKPLKSRELF 229
>gi|271501619|ref|YP_003334645.1| DNA repair protein RecO [Dickeya dadantii Ech586]
gi|270345174|gb|ACZ77939.1| DNA repair protein RecO [Dickeya dadantii Ech586]
Length = 244
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSENEGRVRVLAKGARARRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS SL GL L R L L+
Sbjct: 60 WGGRGEVKTLRNAEP---VSLALPLSGSLLYSGLYVNELLTRVLELETNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL+++G+G+D C +G +
Sbjct: 117 LQQLAGTNGSPEPALRRFELALLEHLGYGVDFLHCAGSGEPVADTMTYRYRSEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D D+L++A + T + AL+ + RE F
Sbjct: 177 VVDNVSFTGRELQALASREFPDTDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|308187804|ref|YP_003931935.1| DNA repair protein recO (Recombination protein O) [Pantoea vagans
C9-1]
gi|308058314|gb|ADO10486.1| DNA repair protein recO (Recombination protein O) [Pantoea vagans
C9-1]
Length = 259
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 16/238 (6%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + GR + +S R + LQ + V
Sbjct: 18 MEGWQ-RAFVLHSRPFSETSLLLDLFSENEGRVRVLAKGARSRRSQLKGALQPFTPLLVR 76
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL + R L P EL+
Sbjct: 77 WSGRGDVKTLRNAEA---VSLALPLSGITLYCGLYVNELVSRVLQPESPFQELFFDYLNC 133
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSV 175
L + EL LL ++G+G+D C +G D + S + S+
Sbjct: 134 LQALASTHGKPEPALRRFELALLGHLGYGVDFLHCAGSGEPVSDDMTYSYREERGFIASL 193
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ L E + DAD+L++A + T + AL+ + +E F
Sbjct: 194 VVNQRSFTGRELHALC-EREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSQELF 245
>gi|322834125|ref|YP_004214152.1| DNA repair protein RecO [Rahnella sp. Y9602]
gi|321169326|gb|ADW75025.1| DNA repair protein RecO [Rahnella sp. Y9602]
Length = 245
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGQGRVRILAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS + GL + R L + L+
Sbjct: 60 WSGRGEVKTLRNAEP---VSLALPLSGLMLYSGLYVNELVSRVLEQEANYSSLFFDYLNC 116
Query: 118 LNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL LL ++G+G+D C +G +
Sbjct: 117 LQNLASASGSPEYALRQFELSLLHHLGYGVDFLHCAGSGEEVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + D +L++A + T + AL+ + RE F
Sbjct: 177 VIDNSSFTGRDLKALASREFPDVSTLRAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|240949698|ref|ZP_04754033.1| DNA repair protein RecO [Actinobacillus minor NM305]
gi|240295956|gb|EER46632.1| DNA repair protein RecO [Actinobacillus minor NM305]
Length = 241
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 13/239 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L R Y E ++++++ T YGR + + R + +LQ + + W
Sbjct: 5 QWQ-RGFVLHKREYSETSLLVDLFTENYGRITLLAKGARRPRSPLKALLQPFTPLLLRWS 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +V + +++ G L R L + EL+ +
Sbjct: 64 GKGDLKV---LTKVEAAALTLPMNTKALYSGFYINEVLVRVLENQTAYQELFHHYLQCVT 120
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I E +LK +G+G+D T C+ TG+ D L
Sbjct: 121 HLALRSEELEPILRTFEFHVLKALGYGVDFTHCMATGLEVDPEMTYQFRENEG-FIASLL 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
+ L S++ A + + AL+ + RE F L
Sbjct: 180 QNNLSFLGKDLLAFAALDFSEKSVQQAAKR----FTRIALKPYLGSQPLKSRELFQSIL 234
>gi|161702946|ref|YP_303133.2| DNA repair protein RecO [Ehrlichia canis str. Jake]
Length = 244
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 8/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD I++ +R YG+ II+ + T+++G G R + + LQ G+ V V W +
Sbjct: 1 MRWQDQGIVIAIRKYGDDQIIISIFTQKHGLKKGLARYQKKTIHR--LQIGDHVNVTWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIFLN 119
+L NLG F++E+++S + ++L + L + LPE E +Y+ L+IF+N
Sbjct: 59 KLISNLGYFKYEIIKSTLHHYIHNNLKTMCIAFFTSILDQVLPENEENYTIYNHLDIFMN 118
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
++ +EL LL +GFGLDL++C V ++L+++SPK+G A+ ++VGLP
Sbjct: 119 SVQNKDVNWQIKYLTLELTLLSELGFGLDLSQCAVNNTNENLIFISPKTGKAISQTVGLP 178
Query: 179 YAE----KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
Y + +L + K + +T YFL K+ L I R+ +
Sbjct: 179 YKKSLLPLPPLLYNVYNNYTYKYSKTDFKVSLNVTGYFLKKHFLTEKNITLIKYRDEIIK 238
Query: 235 KL 236
+
Sbjct: 239 LI 240
>gi|300717985|ref|YP_003742788.1| DNA repair protein [Erwinia billingiae Eb661]
gi|299063821|emb|CAX60941.1| DNA repair protein [Erwinia billingiae Eb661]
Length = 244
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + YGR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLLLDLFSENYGRIRVLAKGARGKRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL L R L + EL+
Sbjct: 60 WGGRGEVKTLRGAEP---ISLALPLSGLTLYCGLYVNELLSRVLEQETAFTELFFDYLYC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL +L ++G+G+D C +G +
Sbjct: 117 LQALAAVTGSPEPALRRFELAMLGHLGYGVDFMHCAGSGEEVADGMTYTYRAEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +E D D+L++A + T + AL+ + +E F
Sbjct: 177 VMGNNTFTGRQLRALEERSFPDIDTLRAAKRFT-----RIALKPYLGGKPLKSQELF 228
>gi|304398618|ref|ZP_07380490.1| DNA repair protein RecO [Pantoea sp. aB]
gi|304353829|gb|EFM18204.1| DNA repair protein RecO [Pantoea sp. aB]
Length = 242
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 16/238 (6%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPFSETSLLLDLFSESEGRVRVLAKGARSRRSNLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL + R L + P EL+
Sbjct: 60 WSGRGEVKTLRNAEA---VSLALPLSGITLYCGLYVNELVSRVLQQESPFPELFFDYLNC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSV 175
L + EL LL ++G+G+D C +G D + S + S+
Sbjct: 117 LQALASTHGKPEPALRRFELALLGHLGYGVDFLHCAGSGEPVSDDMTYSYREERGFIASL 176
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ L E + DAD+L++A + T + AL+ + +E F
Sbjct: 177 VVNNRSFTGRELHALC-EREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSQELF 228
>gi|261345439|ref|ZP_05973083.1| DNA repair protein RecO [Providencia rustigianii DSM 4541]
gi|282566486|gb|EFB72021.1| DNA repair protein RecO [Providencia rustigianii DSM 4541]
Length = 243
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 79/235 (33%), Gaps = 15/235 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T G+ + + +R + LQ + + W
Sbjct: 4 WQ-RAFVLHSRPYSETSLLLDFFTEGEGKIRLLAKGARRNRSPLRGCLQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A LS ++ GL R L P L+ L
Sbjct: 63 KGEIKTLINADP---VSLALPLSGTVLYSGLYLNELTARVLEFGTPYSALFFDYLSCLQV 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLP 178
Q EL LL +G+G+D C +G D + + S+ +
Sbjct: 120 LAGSERTPESALRQFELALLSYLGYGVDFLHCAGSGEPVSDTMTYRYREEKGFIGSLVID 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L DAD+LK+A + T + AL+ + RE F
Sbjct: 180 QFSFTGKQLKALA-SRDFPDADTLKAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|257464704|ref|ZP_05629075.1| DNA repair protein RecO [Actinobacillus minor 202]
gi|257450364|gb|EEV24407.1| DNA repair protein RecO [Actinobacillus minor 202]
Length = 241
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 13/239 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
WQ +L R Y E ++++++ T YGR + + R + +LQ + + W
Sbjct: 5 QWQ-RGFVLHKREYSETSLLVDLFTENYGRITLLAKGARRPRSPLKALLQPFTPLLLRWS 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +V + +++ G L R L + EL+ +
Sbjct: 64 GKGDLKV---LTKVEAAALTLPMNTKALYSGFYINEVLVRVLENQTAYQELFHHYLQCVT 120
Query: 120 CHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I E +LK +G+G+D T C+ TG+ D L
Sbjct: 121 HLALRSEELEPILRTFEFHVLKALGYGVDFTHCMATGLDVDPEMTYQFRENEG-FIASLL 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
+ L S++ A + + AL+ + RE F L
Sbjct: 180 QNNLSFLGKDLLAFAALDFSEKSVQQAAKR----FTRIALKPYLGSQPLKSRELFQSIL 234
>gi|88812351|ref|ZP_01127601.1| Recombination protein O, RecO [Nitrococcus mobilis Nb-231]
gi|88790358|gb|EAR21475.1| Recombination protein O, RecO [Nitrococcus mobilis Nb-231]
Length = 249
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+ A +L R+Y E + I E+ T ++GR R +S R + +LQ + V+W++R
Sbjct: 11 EPAYVLHRRAYRESSAIAELFTAEHGRLGVVARGVRSSRSRWRALLQPFTPLSVSWQARG 70
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
S + G L R L +P EL+ +
Sbjct: 71 DLGTLTDVELQWRSTLPT---GRRLVSGFYLNELLLRVLQREDPYPELFQCYAGAVLMLA 127
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E LL +G+GL L+ + W +
Sbjct: 128 SRGAEQPLLRCFERDLLAAMGYGLLLSHDADGSPIEPQRWYRYEIDKGAVPVTAPRGRLV 187
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
+ +A A Q L + AL+ ++ RE + L
Sbjct: 188 VQGATLSALASGVFPNAGVEVQARQ-----LMRAALRPHVGERPLKSRELYAQYL 237
>gi|238788222|ref|ZP_04632017.1| DNA repair protein recO [Yersinia frederiksenii ATCC 33641]
gi|238723809|gb|EEQ15454.1| DNA repair protein recO [Yersinia frederiksenii ATCC 33641]
Length = 241
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS S+ GL L R L + L+
Sbjct: 60 WTGRGEVKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDSMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|238762799|ref|ZP_04623768.1| DNA repair protein recO [Yersinia kristensenii ATCC 33638]
gi|238699104|gb|EEP91852.1| DNA repair protein recO [Yersinia kristensenii ATCC 33638]
Length = 241
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L + L+
Sbjct: 60 WTGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLARVLEHQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDSMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|213161853|ref|ZP_03347563.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 221
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 8/218 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 YSGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G++ T C +G D +
Sbjct: 117 IQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASV 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
+ + + D D+L++A + T L
Sbjct: 177 VIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALK 214
>gi|123441365|ref|YP_001005352.1| DNA repair protein RecO [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166221916|sp|A1JKK5|RECO_YERE8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|122088326|emb|CAL11117.1| DNA repair protein [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 241
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ S+ GL L R L + L+
Sbjct: 60 WTGRGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|134095251|ref|YP_001100326.1| DNA repair protein RecO [Herminiimonas arsenicoxydans]
gi|133739154|emb|CAL62203.1| DNA repair protein recO (Recombination protein O) [Herminiimonas
arsenicoxydans]
Length = 284
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 12/235 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V TR +GR + + +++ +LQ + V+W +
Sbjct: 56 PGFVLHSYPYKETSLIVDVFTRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKAE 115
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L S L G L + L + L++ LN
Sbjct: 116 VRT---LTSAEWVGGLLPLEKSALLCGFYLNELLVKLLARDDSHPALFNHYVSALNQLAH 172
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKC-VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + E LLK G D C + +
Sbjct: 173 DEPAAIVLRKFERALLKESGVSGDWKICTATRNPLLGGINYVVDPERGPRPARPADTWPH 232
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGKL 236
+ ++E DA + FL ++ L H+ R+ + L
Sbjct: 233 VAGKTLLDMEKEDYSDAATQMQ-----SKFLMRFLLAHHLNGAPLNTRQILIDLL 282
>gi|17545784|ref|NP_519186.1| DNA repair protein RecO [Ralstonia solanacearum GMI1000]
gi|20139464|sp|Q8Y0H9|RECO_RALSO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|17428078|emb|CAD14767.1| probable dna repair protein reco (recombination protein o)
[Ralstonia solanacearum GMI1000]
gi|299067033|emb|CBJ38228.1| DNA repair protein recO (Recombination protein O) [Ralstonia
solanacearum CMR15]
Length = 272
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 9/235 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q A +L Y E ++I++V TR +GR + + + +LQ + ++W R
Sbjct: 41 QQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSALRAVLQTFQPLSLSWSGR 100
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L L G L +F+ + L+ LN
Sbjct: 101 GEVKT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFSHYVETLNKL 157
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS-VGLPYA 180
+ E +LL+ GF L +CV Q + R+ P +
Sbjct: 158 AHGEPVAFTLRAFERVLLRETGFAAQLDRCVDGEPVQPDGDYVYHPERGIRRALPSDPSS 217
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+L + L E + + + FL Y L R+ +
Sbjct: 218 WPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHL---HGTPLSTRQILIDL 269
>gi|149910153|ref|ZP_01898799.1| DNA repair protein RecO [Moritella sp. PE36]
gi|149806739|gb|EDM66703.1| DNA repair protein RecO [Moritella sp. PE36]
Length = 242
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 12/236 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
A +L R + E +++++ T G+ R G+ + ILQ L+ + + +
Sbjct: 6 AFVLHRRPFKESSLLIDFFTINDGKISLVGRAGRGRKNSQSAILQPFTLLNIAYAGKGGL 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V S LS L+R L + EL+ L
Sbjct: 66 KSMRQVEAVSNSLP---LSGRHLYASFYLNELLYRLLASEQANPELFSHYQNALLALAKQ 122
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVV-TGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + + E L++ +G+ L+ C + S+
Sbjct: 123 QPLEPLLREFEFNLMQCLGYIGALSYCADTMDAVFPERMYKYVPHVGIVPSIYKVAVGHS 182
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ L E++ + D+L +A + + L + + RE F+ K L+
Sbjct: 183 FLGADLLAFEQRQFNQDNLAAAKRFC-----RQMLLPYLGNKPLKSRELFINKPLK 233
>gi|238784189|ref|ZP_04628202.1| DNA repair protein recO [Yersinia bercovieri ATCC 43970]
gi|238714898|gb|EEQ06897.1| DNA repair protein recO [Yersinia bercovieri ATCC 43970]
Length = 241
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 80/241 (33%), Gaps = 15/241 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L++ T GR + + R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWTG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS S+ GL L R L + L+ L
Sbjct: 63 RGEVKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHCLQS 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL +L ++G+G+D C +G L
Sbjct: 120 LAGSDGTPEYALRQFELAILAHLGYGVDFLHCAGSGQPVADTMTYRYRE-EKGFIASLVI 178
Query: 180 AEKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L + DAD+L++A + T + AL+ + RE F ++
Sbjct: 179 DHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQFVI 233
Query: 238 E 238
+
Sbjct: 234 K 234
>gi|56421021|ref|YP_148339.1| DNA repair protein RecO [Geobacillus kaustophilus HTA426]
gi|261418496|ref|YP_003252178.1| DNA repair protein RecO [Geobacillus sp. Y412MC61]
gi|319767543|ref|YP_004133044.1| DNA repair protein RecO [Geobacillus sp. Y412MC52]
gi|61214670|sp|Q5KX15|RECO_GEOKA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56380863|dbj|BAD76771.1| DNA repair protein (recombination protein O) [Geobacillus
kaustophilus HTA426]
gi|261374953|gb|ACX77696.1| DNA repair protein RecO [Geobacillus sp. Y412MC61]
gi|317112409|gb|ADU94901.1| DNA repair protein RecO [Geobacillus sp. Y412MC52]
Length = 262
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 1/184 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ +AI++ YGE N I+ + TR++G+ R + + L ++
Sbjct: 1 MFETCEAIVMRTVDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLSYGHYVI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R ++ +G + E+++S A Y + + + E++ L+++L L
Sbjct: 61 RRSRGVGVLHQGELIDSMRALREDLFAAAYAVYIVELTDKSTEEQKRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L +G L +C G T+ S K G +C
Sbjct: 121 YMSEGRDLEILTFIYEMKMLAVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCEASD 180
Query: 180 AEKM 183
+
Sbjct: 181 PHRF 184
>gi|152980172|ref|YP_001353062.1| DNA repair protein RecO [Janthinobacterium sp. Marseille]
gi|151280249|gb|ABR88659.1| RecO DNA repair protein [Janthinobacterium sp. Marseille]
Length = 287
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 10/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V +R +GR + + +++ +LQ + V W +
Sbjct: 59 PGFVLHSYPYKETSLIVDVFSRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVGWSGKAE 118
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L S L G L + L +P L+D LN
Sbjct: 119 VRT---LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLARDDPHPALFDHYVSALNQLAH 175
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LLK G D C +G L + R
Sbjct: 176 DEPAPIVLRKFERALLKETGVASDWRVCTASGKAIVLEQIYVLDPERGPRPARPADVWPR 235
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGKL 236
+ + L E + ++ + FL ++ L H+ R+ + L
Sbjct: 236 VSGKTLLDMENEDYTDTQTQTQSK----FLMRFLLAHHLNGAPLNTRQILIDLL 285
>gi|297529348|ref|YP_003670623.1| DNA repair protein RecO [Geobacillus sp. C56-T3]
gi|297252600|gb|ADI26046.1| DNA repair protein RecO [Geobacillus sp. C56-T3]
Length = 262
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 1/184 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ +AI++ YGE N I+ + TR++G+ R + + L ++
Sbjct: 1 MFETCEAIVMRTVDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLSYGHYVI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R ++ +G + E+++S A Y + + + E++ L+++L L
Sbjct: 61 RRSRGVGVLHQGELIDSMRALREDLFAAAYAVYIVELTDKSTEEQKRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E +L +G L +C G T+ S K G +C
Sbjct: 121 YMSEGRDLEILTFIYETKMLAVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCEASD 180
Query: 180 AEKM 183
+
Sbjct: 181 PHRF 184
>gi|238750384|ref|ZP_04611885.1| DNA repair protein recO [Yersinia rohdei ATCC 43380]
gi|238711315|gb|EEQ03532.1| DNA repair protein recO [Yersinia rohdei ATCC 43380]
Length = 241
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 82/243 (33%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS S+ GL L R L ++ L+
Sbjct: 60 WVGRGEIKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEQQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDSMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|238793771|ref|ZP_04637392.1| DNA repair protein recO [Yersinia intermedia ATCC 29909]
gi|238726835|gb|EEQ18368.1| DNA repair protein recO [Yersinia intermedia ATCC 29909]
Length = 241
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 15/241 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L++ T GR + + R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWAG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A L+ S+ GL L R L + L+ L
Sbjct: 63 RGEVKTLRSAEP---VSLALPLTGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHCLQA 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLP 178
Q EL +L ++G+G+D C +G D + + S+ +
Sbjct: 120 LAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPISDTMTYRYREEKGFIASLVVD 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ S L + DAD+L++A + T + AL+ + RE F ++
Sbjct: 180 HYSFTGRQLSALA-NREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQFVI 233
Query: 238 E 238
+
Sbjct: 234 K 234
>gi|317049178|ref|YP_004116826.1| DNA repair protein RecO [Pantoea sp. At-9b]
gi|316950795|gb|ADU70270.1| DNA repair protein RecO [Pantoea sp. At-9b]
Length = 242
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 16/238 (6%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPYSETSLLLDLFSESEGRVRVLAKGARSRRSQLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL L R L + P +L+
Sbjct: 60 WGGRGEVKTLRNAEA---VSLALPLSGITLYCGLYVNELLSRVLEQEIPFSDLFFDYLNC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSV 175
+ + EL LL ++G+G+D C + D + S + S+
Sbjct: 117 IQALAAASGTPEPALRRFELALLGHLGYGVDFLHCAGSGEEVDDGMTYSYREEKGFIASL 176
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ LW E DADSL++A + T + AL+ + +E F
Sbjct: 177 VVNQRSFTGRQLRALW-ERDFPDADSLRAAKRFT-----RMALKPYLGGKPLKSQELF 228
>gi|58617232|ref|YP_196431.1| DNA repair protein RecO [Ehrlichia ruminantium str. Gardel]
gi|58416844|emb|CAI27957.1| Putative DNA repair protein recO [Ehrlichia ruminantium str.
Gardel]
Length = 244
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 8/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD I++ +R Y + +I+ V+T+++G G + + + LQ G+ + V W +
Sbjct: 1 MRWQDQGIVIAIRKYCDNQVIISVLTKKHGLKKGLTKYYKKTINR--LQIGDYINVTWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
RL NLG F++E+++S ++++L L + + +
Sbjct: 59 RLISNLGYFKYELIKSTIYYYMTNNLQTLCLAFFTFILDQVLPENEENYVIYHYFDIFIN 118
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ ++++E++LL +GFGLDL+KC V + L+++SPK+G A+ +++GLP
Sbjct: 119 SIQSKNINWQIKYLKLEMVLLSELGFGLDLSKCAVNQTQESLIFISPKTGKAISKNIGLP 178
Query: 179 YAEKMLVLPSFLWKEEQTIDAD----SLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
Y +K+L LP L+ + K + + YF K+ L I RE +
Sbjct: 179 YKKKLLPLPQLLYNIYNNYTYEFSNTEFKLSLNVLGYFFKKHFLTDKNITFLKYREEIIK 238
Query: 235 KL 236
L
Sbjct: 239 LL 240
>gi|284006741|emb|CBA71998.1| DNA repair protein [Arsenophonus nasoniae]
Length = 237
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 13/239 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T GR + +S R + LQ + + W
Sbjct: 4 WQ-RAFVLHTRPYSETSLLLDFFTENEGRIRLLAKGARSRRSNLKGCLQPFTPLLIRWGG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + A + ++ GL L R L + P L+ L
Sbjct: 63 KGE---MKTLRSAEPISLALPFTGTVLYSGLYVNELLARVLAQNIPYQSLFFEYLTCLQI 119
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
S + EL LL ++G+G+D C +G + +
Sbjct: 120 LAGSESTPEHALRRFELSLLSHLGYGVDFLHCSGSGEPVINGMTYRYREEKGFIASLVID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ + D D+LK+A + T + AL+ + RE F +L
Sbjct: 180 HLSFTGKQLKAFACREFPDVDTLKAAKRFT-----RIALKPYLGGTPLKSRELFYQLIL 233
>gi|57239220|ref|YP_180356.1| DNA repair protein RecO [Ehrlichia ruminantium str. Welgevonden]
gi|58579178|ref|YP_197390.1| DNA repair protein RecO [Ehrlichia ruminantium str. Welgevonden]
gi|57161299|emb|CAH58220.1| putative DNA repair protein RecO [Ehrlichia ruminantium str.
Welgevonden]
gi|58417804|emb|CAI27008.1| Putative DNA repair protein recO [Ehrlichia ruminantium str.
Welgevonden]
Length = 244
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 8/242 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD I++ +R Y + +I+ V+T+++G G + + + LQ G+ + V W +
Sbjct: 1 MRWQDQGIVIAIRKYCDNQVIISVLTKKHGLKKGLTKYYKKTINR--LQIGDYINVTWSA 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
RL NLG F++E+++S ++++L L + + +
Sbjct: 59 RLISNLGYFKYELIKSTIYYYITNNLQTLCLAFFTFILDQVLPENEENYVIYHYFDIFIN 118
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ ++++E++LL +GFGLDL+KC V + L+++SPK+G A+ ++GLP
Sbjct: 119 SIQSKNINWQIKYLKLEMVLLSELGFGLDLSKCAVNQTQESLIFISPKTGKAISENIGLP 178
Query: 179 Y----AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
Y +L + K + + YF K+ L I RE +
Sbjct: 179 YKKKLLPLPQLLYNIYNDYTYEFSNTEFKLSLNVLGYFFKKHFLTDKNITFLKYREEIIK 238
Query: 235 KL 236
L
Sbjct: 239 LL 240
>gi|310764813|gb|ADP09763.1| DNA repair protein RecO [Erwinia sp. Ejp617]
Length = 245
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 13/230 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + Q+GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPWSETSLLLDLFSEQHGRVRVLAKGARSKRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS + GL L R L EL+
Sbjct: 60 WSGRGEVKTLRAAEP---VSLALPLSGNTLYCGLYVNELLSRVLQHETAFSELFFDYLQC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ P+ + EL +L ++G+G+D C +G +
Sbjct: 117 IQTLAADPASPEPALRRFELSMLGHLGYGVDFLHCAGSGEEVADSMTYSYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
+ + DAD+L++A + T + AL+ +
Sbjct: 177 VAGHRSFSGRQLRALSAREFPDADTLRAAKRFT-----RIALKPYLGGKP 221
>gi|259907679|ref|YP_002648035.1| DNA repair protein RecO [Erwinia pyrifoliae Ep1/96]
gi|224963301|emb|CAX54786.1| DNA repair protein RecO [Erwinia pyrifoliae Ep1/96]
gi|283477530|emb|CAY73446.1| DNA repair protein recO (Recombination protein O) [Erwinia
pyrifoliae DSM 12163]
Length = 245
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 13/230 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + Q+GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPWSETSLLLDLFSEQHGRVRVLAKGARSKRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS + GL L R L EL+
Sbjct: 60 WSGRGEVKTLRAAEP---VSLALPLSGNTLYCGLYVNELLSRVLQHETAFSELFFDYLQC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ P+ + EL +L ++G+G+D C +G +
Sbjct: 117 IQTLAADPASPEPALRRFELSMLGHLGYGVDFLHCAGSGEEVADSMTYSYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
+ + DAD+L++A + T + AL+ +
Sbjct: 177 VAGHRSFSGRQLRALSAREFPDADTLRAAKRFT-----RIALKPYLGGKP 221
>gi|300691970|ref|YP_003752965.1| DNA repair protein recO (Recombination protein O) [Ralstonia
solanacearum PSI07]
gi|299079030|emb|CBJ51692.1| DNA repair protein recO (Recombination protein O) [Ralstonia
solanacearum PSI07]
Length = 272
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 72/235 (30%), Gaps = 9/235 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q A +L Y E ++I++V TR +GR + + + +LQ + ++W R
Sbjct: 41 QQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSALRAVLQTFQPLSLSWSGR 100
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L L G L +F+ + L+ LN
Sbjct: 101 GEVKT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFSHYVETLNKL 157
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR-SVGLPYA 180
+ E +LL+ GF L +C+ Q + R P +
Sbjct: 158 AHGEPVAFTLRAFERVLLRETGFAAQLDRCIDGEPVQPDGDYVYHPERGIRRAQPSDPSS 217
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+L + L E + + + FL Y L R+ +
Sbjct: 218 WPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHL---HGTPLSTRQILIDL 269
>gi|332308047|ref|YP_004435898.1| DNA repair protein RecO [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332175376|gb|AEE24630.1| DNA repair protein RecO [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 240
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 11/229 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
+L R+Y E + ++ T + G+ V+ + + + +LQ + V R
Sbjct: 8 GFVLHRRAYRETSFLINFFTMENGKVSAIVKGARGAKSDKKSLLQPFQPLLVAVSGRFEL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ LS L L R L + P E++ + L+
Sbjct: 68 KNLQQVEST---GAMLRLSGQALYCALYLNEVLNRVLADDIPHPEIFVLYQQSLHALVDS 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ I EL LL +G+G+DLT TG C G
Sbjct: 125 THFEPILRSFELGLLDALGYGIDLTHDADTGQPLAESGYYRIQAELGCVYQGDIRLSGCH 184
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENF 232
+ S L + DA+SL+ A +T + AL + L RE F
Sbjct: 185 LGSSLLKVAGEHWDAESLQVAKAVT-----RKALGELLGSKPLMSRELF 228
>gi|253988788|ref|YP_003040144.1| DNA repair protein RecO [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780238|emb|CAQ83399.1| dna repair protein reco (recombination protein o) [Photorhabdus
asymbiotica]
Length = 241
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 15/241 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A IL R Y E +++L++ T GR + +S R + LQ + + W
Sbjct: 4 WQ-RAFILHRRPYSETSLLLDLFTENEGRISVLAKGARSRRSNLKGCLQPFTPLLIRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + L+ S+ GL L R L + L+ L
Sbjct: 63 RG---VVKTLRDADPISLTLPLTGSVLYSGLYVNELLSRVLEQGTAYPALFFDYLQCLQV 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL N+G+G+D C +G D + + S+ +
Sbjct: 120 LAASEYTPEHALRRFELALLANLGYGVDYLHCAGSGEPVTDTMTYRYREEKGFIASLVVD 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGKLL 237
+ L + D+ +LK+A + T + AL+ + RE F +
Sbjct: 180 HYSFTGHELKSLA-TREFPDSVTLKAAKRFT-----RIALKPYLGGNPLKSRELFRQFVR 233
Query: 238 E 238
+
Sbjct: 234 K 234
>gi|323490067|ref|ZP_08095288.1| DNA repair protein RecO [Planococcus donghaensis MPA1U2]
gi|323396363|gb|EGA89188.1| DNA repair protein RecO [Planococcus donghaensis MPA1U2]
Length = 260
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 2/193 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M Q + I++ YGE N I+ + T++ G+ R + + ++
Sbjct: 1 MQNQVEGIVIRTMPYGETNKIVTLFTKEAGKITCMARGAKKPASRLAAITQVFTHGSFSI 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + LES Y + R + EP ++DML L+
Sbjct: 61 YKGKGMGTIQAGDPLESLRHIREDIMSTAYASYVTELIDRLTEQDEPQPAIFDMLYQALH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I + +E +L+ G L +C G T+ S + G +C
Sbjct: 121 AIDDGYDPEAITLFVEWKMLQTAGLTPTLHQCANCGSTEGEFAFSFQELGFLCHRC-FHI 179
Query: 180 AEKMLVLPSFLWK 192
++ L L K
Sbjct: 180 DSYIIRLSPALVK 192
>gi|238796737|ref|ZP_04640243.1| DNA repair protein recO [Yersinia mollaretii ATCC 43969]
gi|238719468|gb|EEQ11278.1| DNA repair protein recO [Yersinia mollaretii ATCC 43969]
Length = 241
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 80/241 (33%), Gaps = 15/241 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L++ T GR + + R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS S+ GL L R L + L+ L
Sbjct: 63 RGEVKTLRSAEP---VSLALPLSGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHCLQS 119
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
Q EL +L ++G+G+D C +G L
Sbjct: 120 LAGSDGTPEYALRQFELAILAHLGYGVDFLHCSGSGQPVSETMTYRYRE-EKGFIASLVI 178
Query: 180 AEKMLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
L + DAD+L++A + T + AL+ + RE F ++
Sbjct: 179 DHYSFTGRQLLALAHREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQFVI 233
Query: 238 E 238
+
Sbjct: 234 K 234
>gi|255003183|ref|ZP_05278147.1| DNA repair protein RecO [Anaplasma marginale str. Puerto Rico]
gi|255004314|ref|ZP_05279115.1| DNA repair protein RecO [Anaplasma marginale str. Virginia]
Length = 233
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 11/236 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
+++G R YG+++++L ++TR G G R + LQ G+L+ WR++L NL
Sbjct: 2 GVVMGTRPYGDEHLLLSILTRNRGLRRGLTRLTKKR----PLQIGDLIDATWRAKLPTNL 57
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLNCHKIPS 125
G F EV+ S + L L SI + LPE EP LYD F + +
Sbjct: 58 GHFTCEVIASAFYSYFRDRIKLMCLSSITHIMSTALPENEPHPTLYDSFQDFAAAAEAEA 117
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
++++EL++L +GF LDL+KC V+ +LL++SPK+G A+ +VG Y K+L
Sbjct: 118 PWYNHYLKLELLVLSQLGFALDLSKCAVSNSKDNLLFISPKTGRALSEAVGHAYRNKLLP 177
Query: 186 LPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
LP L E + AD + ++ +FL+++ LQ + R+ G L
Sbjct: 178 LPKVLRSISCGVETECCSADEFALSLKILGFFLHRHLLQESH-TFQESRKILTGLL 232
>gi|329297707|ref|ZP_08255043.1| DNA repair protein RecO [Plautia stali symbiont]
Length = 245
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 15/237 (6%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPYSETSLLLDLFSESQGRVRVLAKGARSRRSQRKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL L R L + P EL+
Sbjct: 60 WGGRGEVKTLRNAEA---VSLALPLSGITLYCGLYVNELLSRVLEQEIPFSELFFDYLSC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSV 175
+ + + + EL LL ++G+G++ C +G D + S + S+
Sbjct: 117 IQTLAVANGSPEPALRRFELALLGHLGYGVNFLHCAGSGEAVDDGMTYSYREEKGFIASL 176
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ LW E + DAD+L++A + T + AL+ + L +
Sbjct: 177 VVNQRSFTGRQLRALW-EREFPDADTLRAAKRFT-----RMALKPYLGGKPLNSQEL 227
>gi|37527214|ref|NP_930558.1| DNA repair protein RecO [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|42559442|sp|Q7N1X7|RECO_PHOLL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|36786648|emb|CAE15712.1| DNA repair protein recO (recombination protein O) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 241
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 14/230 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E +++L++ T GR + + R + LQ + V W R
Sbjct: 8 FVLHGRPYSETSLLLDLFTENEGRISVLAKGARGRRSNLKGCLQPFTPLLVRWSGRG--- 64
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KIP 124
+ + A L+ S+ GL L R L + L+ L
Sbjct: 65 AIKTLRDADPISLALPLTGSVLYSGLYINELLSRVLEQGTAYPALFFDYLQCLQILAASE 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ EL LL N+G+G+D C +G D + + S+ + +
Sbjct: 125 YTPEYALRRFELALLANLGYGVDYLHCAGSGEPVADTMTYRYREEKGFIASLVVDHYSFT 184
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L + D+ +LK+A + T + AL+ + RE F
Sbjct: 185 GRELKSLA-TREFPDSATLKAAKRFT-----RIALKPYLGGKPLKSRELF 228
>gi|72394258|gb|AAZ68535.1| recO-related protein [Ehrlichia canis str. Jake]
Length = 248
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 8/241 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
WQD I++ +R YG+ II+ + T+++G G R + + LQ G+ V V W ++
Sbjct: 6 RWQDQGIVIAIRKYGDDQIIISIFTQKHGLKKGLARYQKKTIHR--LQIGDHVNVTWSAK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L NLG F++E+++S + ++L + L + LPE E +Y+ L+IF+N
Sbjct: 64 LISNLGYFKYEIIKSTLHHYIHNNLKTMCIAFFTSILDQVLPENEENYTIYNHLDIFMNS 123
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ +EL LL +GFGLDL++C V ++L+++SPK+G A+ ++VGLPY
Sbjct: 124 VQNKDVNWQIKYLTLELTLLSELGFGLDLSQCAVNNTNENLIFISPKTGKAISQTVGLPY 183
Query: 180 AE----KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +L + K + +T YFL K+ L I R+ +
Sbjct: 184 KKSLLPLPPLLYNVYNNYTYKYSKTDFKVSLNVTGYFLKKHFLTEKNITLIKYRDEIIKL 243
Query: 236 L 236
+
Sbjct: 244 I 244
>gi|226328139|ref|ZP_03803657.1| hypothetical protein PROPEN_02030 [Proteus penneri ATCC 35198]
gi|225203843|gb|EEG86197.1| hypothetical protein PROPEN_02030 [Proteus penneri ATCC 35198]
Length = 245
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A ++ R Y E +++L+ T GR + + R + LQ + + W
Sbjct: 4 WQ-RAFVIHARPYSETSLLLDFFTENEGRVRILSKGARGRRSPLKGALQPFTPLLIRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A L+ S+ GL L R L L+ L
Sbjct: 63 RGEIKTLRDAEP---ISLALPLTGSVLYSGLYLNELLSRVLENGTSYSVLFFEYLSCLQI 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + EL LL +G+GLD C +G + +
Sbjct: 120 LAASETTPEAALRRFELALLTQLGYGLDFLHCAGSGEPVSDSMTYRYREEKGFIASLVVD 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ ++LK+A + T + AL+ + RE F
Sbjct: 180 HNSFTGFELKSLASREFPTVETLKAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|332162689|ref|YP_004299266.1| DNA repair protein RecO [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|318606794|emb|CBY28292.1| DNA recombination and repair protein RecO [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325666919|gb|ADZ43563.1| DNA repair protein RecO [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 241
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 14/243 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R A L+ S+ GL L R L + L+
Sbjct: 60 CTGRGEVKTLRSAEP---VSLALPLAGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + DAD+L++A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSRELFRQF 231
Query: 236 LLE 238
+++
Sbjct: 232 VIK 234
>gi|290476132|ref|YP_003469032.1| gap repair protein [Xenorhabdus bovienii SS-2004]
gi|289175465|emb|CBJ82268.1| gap repair protein, part of RecFOR complex that targets RecA to
ssDNA-dsDNA junction [Xenorhabdus bovienii SS-2004]
Length = 245
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 84/241 (34%), Gaps = 15/241 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T GR + + R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPYSETSLLLDFFTENEGRVRVLAKGVRRRRSHLKGCLQPFTPLLVRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + A L+ S+ GL L R L + L+ L
Sbjct: 63 RGEIKILRDAEP---ISLALPLTGSVLYSGLYVNELLSRVLEQGAAYPALFFDYLQCLQI 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL N+G+G+D C +G D + + S+ +
Sbjct: 120 LAASEYTPEYALRRFELALLTNMGYGVDYLHCAGSGEPVSDTMNYRYREEKGFIASLVVD 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ L + D+ +LK+A + T + AL+ + RE F +
Sbjct: 180 HFSFTGNELKALA-TGEFTDSLTLKAAKRFT-----RIALKPYLGGKPLKSRELFRQFVR 233
Query: 238 E 238
+
Sbjct: 234 K 234
>gi|149926462|ref|ZP_01914723.1| DNA repair protein RecO [Limnobacter sp. MED105]
gi|149824825|gb|EDM84039.1| DNA repair protein RecO [Limnobacter sp. MED105]
Length = 244
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/243 (14%), Positives = 78/243 (32%), Gaps = 16/243 (6%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
D A +L Y E ++I+E+ +++GR + + ++ +L + + V + +
Sbjct: 8 TDFAYVLHSVPYKETSLIVELFCKEHGRLPVVAKGAKRPHSGLRAVLVSFQPLSVRFTGK 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ L R L + +L+++ L
Sbjct: 68 SEVKTLMQAEWLGGLMSP---DGKALFAAYYLNELLMRGLSREDTHPDLFELYQNTLLGL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ Q E+ LL+++G+GLD + + S G
Sbjct: 125 AGGDDMNVCVRQFEVGLLQSLGYGLDWQQDRTGVAIDPERHYVWQDHEGWSPSDGGNVNN 184
Query: 182 ------KMLVLPSFLWKEEQTIDADSLKSAFQ-LTDYFLNKYALQHNIIHCHLLRENFLG 234
+ +V ++ + + I + S SA + +T L + N + R
Sbjct: 185 STSSSVEQMVQGLWIAEIQNGIWSKSAASALKPITRKLLMTHI-APNGLM---SRVWMEH 240
Query: 235 KLL 237
L
Sbjct: 241 LLR 243
>gi|254995034|ref|ZP_05277224.1| DNA repair protein RecO [Anaplasma marginale str. Mississippi]
Length = 233
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 11/236 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
+++G R YG+++++L ++TR G G R + LQ G+L+ WR++L NL
Sbjct: 2 GVVMGTRPYGDEHLLLSILTRNRGLRRGLTRLTKKR----PLQIGDLIDATWRAKLPTNL 57
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLNCHKIPS 125
G F +EV+ S + L L SI + LPE EP LYD F + +
Sbjct: 58 GHFTYEVIASAFYSYFRDRIKLMCLSSITHIMSTALPENEPHPTLYDSFQDFAAAAEAEA 117
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
++++EL++L +GF LDL+KC V+ +LL++SPK+G A+ +VG Y K+L
Sbjct: 118 PWYNHYLKLELLVLSQLGFALDLSKCAVSNSKDNLLFISPKTGRALSEAVGHAYRNKLLP 177
Query: 186 LPSFLWK-----EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKL 236
LP L E + AD + ++ +FL+++ LQ + R+ G L
Sbjct: 178 LPKVLRSISCGVETECCSADEFALSLKILGFFLHRHLLQESH-TFQESRKILTGLL 232
>gi|300704605|ref|YP_003746208.1| DNA repair protein reco (recombination protein o) [Ralstonia
solanacearum CFBP2957]
gi|299072269|emb|CBJ43602.1| DNA repair protein recO (Recombination protein O) [Ralstonia
solanacearum CFBP2957]
Length = 272
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 5/170 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q A +L Y E ++I++V TR +GR + + + +LQ + ++W R
Sbjct: 41 QQPAFVLHSYPYRETSLIIDVFTRDHGRVALVAKGAKRPHSALRAVLQTFQPLSLSWSGR 100
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L L G L +F+ + L+ LN
Sbjct: 101 GEVKT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFSHYVDTLNKL 157
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
+ E +LL+ GF L +C+ Q +
Sbjct: 158 AHGEPVAFTLRAFERVLLRETGFAARLDRCIDGEPVQPDGDYVYHPERGI 207
>gi|196248953|ref|ZP_03147653.1| DNA repair protein RecO [Geobacillus sp. G11MC16]
gi|196211829|gb|EDY06588.1| DNA repair protein RecO [Geobacillus sp. G11MC16]
Length = 258
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 1/188 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + +AI++ YGE N I+ + TR++G+ R + + L ++
Sbjct: 1 MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLI 60
Query: 61 RLAQNLG-EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R ++ +G + E+++S Y + + E++ L+++L L
Sbjct: 61 RRSRGVGLLHQGELIDSMRVLREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L +G L +C G T+ S K G +C
Sbjct: 121 YMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCEAAD 180
Query: 180 AEKMLVLP 187
+ + P
Sbjct: 181 PHRFPLSP 188
>gi|138896060|ref|YP_001126513.1| DNA repair protein RecO [Geobacillus thermodenitrificans NG80-2]
gi|166221892|sp|A4IR14|RECO_GEOTN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|134267573|gb|ABO67768.1| DNA repair protein RecO [Geobacillus thermodenitrificans NG80-2]
Length = 258
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 1/188 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + +AI++ YGE N I+ + TR++G+ R + + L ++
Sbjct: 1 MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLI 60
Query: 61 RLAQNLG-EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R ++ +G + E+++S Y + + E++ L+++L L
Sbjct: 61 RRSRGVGLLHQGELIDSMRVLREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L +G L +C G T+ S K G +C
Sbjct: 121 YMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCESAD 180
Query: 180 AEKMLVLP 187
+ + P
Sbjct: 181 PHRFPLSP 188
>gi|239827757|ref|YP_002950381.1| DNA repair protein RecO [Geobacillus sp. WCH70]
gi|259563679|sp|C5D4S3|RECO_GEOSW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|239808050|gb|ACS25115.1| DNA repair protein RecO [Geobacillus sp. WCH70]
Length = 263
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 1/178 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M+ + +AI++ YGE N I+ TR++G+ R + + +
Sbjct: 1 MFEKCEAIVIRAIDYGETNKIVTFFTREWGKVATMARGAKKPSSRLSAVTQPFTHGYYLI 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + ++++S Y + + E++ L+++L L
Sbjct: 61 QRSRGVGVLHQGDIIDSMRTIREDIFTAAYASYIVEMTDKVTEEQQRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + E+ +L +G L C V G T+ S K G +C
Sbjct: 121 YMNEGLDLEILACIYEMKMLSVMGIPPKLDHCAVCGRTEGKFSFSIKEAGFLCHRCEK 178
>gi|291618444|ref|YP_003521186.1| RecO [Pantoea ananatis LMG 20103]
gi|291153474|gb|ADD78058.1| RecO [Pantoea ananatis LMG 20103]
gi|327394840|dbj|BAK12262.1| DNA repair protein RecO [Pantoea ananatis AJ13355]
Length = 245
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + GR + +S R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHSRPFSETSLLLDLFSESEGRVRVLAKGARSRRSQLKGTLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS GL L R L + P EL+
Sbjct: 60 WSGRGEVKTLRNAEA---VSLALPLSGITLYCGLYVNELLSRVLEQHIPFSELFFDYLQC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL LL ++G+G+D C +G +
Sbjct: 117 IQMLAAGEGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVSEAMTYSYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + DA++L++A + T + AL+ + +E F
Sbjct: 177 VLNQRSFTGRELQALFTREFPDAETLRAAKRFT-----RMALKPYLGGKPLKSQELF 228
>gi|207725213|ref|YP_002255609.1| DNA repair protein RecO [Ralstonia solanacearum MolK2]
gi|206590447|emb|CAQ37409.1| dna repair protein reco (recombination protein o) [Ralstonia
solanacearum MolK2]
Length = 272
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 5/170 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q A +L Y E ++I++V TR +GR + + + +LQ + ++W R
Sbjct: 41 QQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSALRAVLQTFQPLSLSWSGR 100
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L L G L +F+ + L+ LN
Sbjct: 101 GEVKT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHAVLFSHYVDTLNKL 157
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
+ E +LL+ GF L +C+ Q +
Sbjct: 158 AHGEPVAFTLRAFERVLLRETGFAAQLDRCIDGEPVQPDGDYVYHPERGI 207
>gi|83748441|ref|ZP_00945463.1| RecO [Ralstonia solanacearum UW551]
gi|207743588|ref|YP_002259980.1| dna repair protein reco (recombination protein o) [Ralstonia
solanacearum IPO1609]
gi|83724852|gb|EAP72008.1| RecO [Ralstonia solanacearum UW551]
gi|206594987|emb|CAQ61914.1| dna repair protein reco (recombination protein o) [Ralstonia
solanacearum IPO1609]
Length = 272
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 5/170 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q A +L Y E ++I++V TR +GR + + + +LQ + ++W R
Sbjct: 41 QQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSALRAVLQTFQPLSLSWSGR 100
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L L G L +F+ + L+ LN
Sbjct: 101 GEVKT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHAVLFSHYVDTLNKL 157
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
+ E +LL+ GF L +C+ Q +
Sbjct: 158 AHGEPVAFTLRAFERVLLRETGFAAQLDRCIDGEPVQPDGDYVYHPERGI 207
>gi|52081074|ref|YP_079865.1| DNA repair protein RecO [Bacillus licheniformis ATCC 14580]
gi|52786454|ref|YP_092283.1| DNA repair protein RecO [Bacillus licheniformis ATCC 14580]
gi|319644967|ref|ZP_07999200.1| DNA repair protein recO [Bacillus sp. BT1B_CT2]
gi|81609046|sp|Q65H74|RECO_BACLD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|52004285|gb|AAU24227.1| RecO [Bacillus licheniformis ATCC 14580]
gi|52348956|gb|AAU41590.1| RecO [Bacillus licheniformis ATCC 14580]
gi|317392776|gb|EFV73570.1| DNA repair protein recO [Bacillus sp. BT1B_CT2]
Length = 256
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLF 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + LG + E++ES L Y + + E++P L+++L +
Sbjct: 61 RKSSGLGTLEQGEMIESMRNIREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I IE+ +L +G +L +CV S + G +C
Sbjct: 121 RLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDGTFHFSIRDNGFICHRCFAK 179
>gi|227356255|ref|ZP_03840644.1| recombination protein O [Proteus mirabilis ATCC 29906]
gi|227163719|gb|EEI48635.1| recombination protein O [Proteus mirabilis ATCC 29906]
Length = 246
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A ++ R Y E +++L+ T GR + + R + LQ + +
Sbjct: 1 MEGWQ-RAFVIHARPYSETSLLLDFFTENEGRVRILSKGARGRRSPLKGALQPFTPLLIR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ ++ GL L R L L+
Sbjct: 60 WSGRGEIKTLRDAEP---ISLALPLTGTVLYSGLYLNELLSRVLENGTSYSALFFEYLSC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+GLD C +G +
Sbjct: 117 LQILAASETTPEAALRRFELALLTQLGYGLDFLHCAGSGEPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ L + + A +LK+A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGLELKSLAKREFPTAGTLKAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|292489088|ref|YP_003531975.1| DNA repair protein RecO [Erwinia amylovora CFBP1430]
gi|292900212|ref|YP_003539581.1| DNA repair protein [Erwinia amylovora ATCC 49946]
gi|291200060|emb|CBJ47186.1| DNA repair protein [Erwinia amylovora ATCC 49946]
gi|291554522|emb|CBA22090.1| DNA repair protein recO (Recombination protein O) [Erwinia
amylovora CFBP1430]
Length = 245
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L++ + Q GR + +S R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPWSETSLLLDLFSEQCGRVRVLAKGARSKRSSLKGALQPFTPLLVRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS + GL L R L EL+ +
Sbjct: 63 RGEVKTLRAAEP---VSLALPLSGTTLYCGLYVNELLSRVLQHETAFNELFFDYLQCIQT 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL +L ++G+G+D C +G + +
Sbjct: 120 LAADSGSPEPALRRFELSMLGHLGYGVDFLHCAGSGEEVADSMTYSYREEKGFIASLVAG 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ DAD+L++A + T + AL+ + E F
Sbjct: 180 HRSFSGRQLRALSAREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSSELF 228
>gi|312110186|ref|YP_003988502.1| DNA repair protein RecO [Geobacillus sp. Y4.1MC1]
gi|311215287|gb|ADP73891.1| DNA repair protein RecO [Geobacillus sp. Y4.1MC1]
Length = 264
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 1/184 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M+ + +AI++ YGE N I+ TR++G+ R + + +
Sbjct: 1 MFEKCEAIVIRATDYGETNKIVTFFTREWGKVAAMARGAKKPSSRLSAVTQLFTYGYYLI 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + ++++S A Y + + E + L+++L L
Sbjct: 61 QRSRGVGVLQQGDIIDSMRATREDIFTAAYASYIVELTDKITEEHQRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E +L +G L C + G T+ S K G +C
Sbjct: 121 YMNEGRDLEILASIYETKMLSVMGIPPKLDYCAICGRTEGKFSFSIKEAGFLCHRCEQYD 180
Query: 180 AEKM 183
++
Sbjct: 181 PHRI 184
>gi|188533140|ref|YP_001906937.1| DNA repair protein RecO [Erwinia tasmaniensis Et1/99]
gi|238691986|sp|B2VI48|RECO_ERWT9 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|188028182|emb|CAO96040.1| DNA repair protein RecO [Erwinia tasmaniensis Et1/99]
Length = 245
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L++ + Q+GR + ++ R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPWSETSLLLDLFSEQHGRVRVLAKGARAKRSSLKGALQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A LS + GL L R L EL+
Sbjct: 60 WSGRGEVKTLRSAEP---VSLALPLSGTTLYCGLYVNELLSRVLQHETAFSELFFDYLNC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ P + EL +L ++G+G+D C +G +
Sbjct: 117 IQTLAADPPSPEPALRRFELSMLGHLGYGVDFLHCAGSGEEIADGMTYSYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + DAD+L++A + T + AL+ + E F
Sbjct: 177 VTGHRSFTGRQLRALSTREFPDADTLRAAKRFT-----RIALKPWLGGKPLKSSELF 228
>gi|197285741|ref|YP_002151613.1| DNA repair protein [Proteus mirabilis HI4320]
gi|238693200|sp|B4F045|RECO_PROMH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|194683228|emb|CAR43909.1| DNA repair protein [Proteus mirabilis HI4320]
Length = 246
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 14/237 (5%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A ++ R Y E +++L+ T GR + + R + LQ + +
Sbjct: 1 MEGWQ-RAFVIHARPYSETSLLLDFFTENEGRVRILSKGARGRRSPLKGALQPFTPLLIR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W R A L+ ++ GL L R L L+
Sbjct: 60 WSGRGEIKTLRDAEP---ISLALPLTGTVLYSGLYLNELLSRVLENGTSYSTLFFEYLSC 116
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + EL LL +G+GLD C +G +
Sbjct: 117 LQILAASETTPEAALRRFELALLTQLGYGLDFLHCAGSGEPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ L + + A +LK+A + T + AL+ + RE F
Sbjct: 177 VVDHYSFTGLELKSLAKREFPTAGTLKAAKRFT-----RMALKPYLGGKPLKSRELF 228
>gi|295399212|ref|ZP_06809194.1| DNA repair protein RecO [Geobacillus thermoglucosidasius C56-YS93]
gi|294978678|gb|EFG54274.1| DNA repair protein RecO [Geobacillus thermoglucosidasius C56-YS93]
Length = 264
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 1/184 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M+ + +AI++ YGE N I+ TR++G+ R + + +
Sbjct: 1 MFEKCEAIVIRATDYGETNKIVTFFTREWGKVAAMARGAKKPSSRLSAVTQLFTYGYYLI 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + ++++S A Y + + E++ L+++L L
Sbjct: 61 QRSRGVGVLQQGDIIDSMRATREDIFTAAYASYIVELTDKITEEQQRNPYLFELLLQTLQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E +L +G L C + G T+ S K G +C
Sbjct: 121 YMNEGRDLEILASIYETKMLSVMGIPPKLDYCAICGRTEGKFSFSIKEAGFLCHRCEQYD 180
Query: 180 AEKM 183
++
Sbjct: 181 PHRI 184
>gi|296333315|ref|ZP_06875768.1| DNA repair protein RecO [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675180|ref|YP_003866852.1| DNA double strand break repair and homologous recombination factor
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296149513|gb|EFG90409.1| DNA repair protein RecO [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413424|gb|ADM38543.1| DNA double strand break repair and homologous recombination factor
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 255
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + E++ S L Y + + E++P L++ +
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I ++ +L +G +L CV S + G +C
Sbjct: 121 QLDEGTDPDVITFIAQMKMLGVMGLYPELNHCVHCKSQDGTFHFSVRDNGFICHRCFEK 179
>gi|300724128|ref|YP_003713445.1| gap repair protein [Xenorhabdus nematophila ATCC 19061]
gi|297630662|emb|CBJ91327.1| gap repair protein, part of RecFOR complex that targets RecA to
ssDNA-dsDNA junction [Xenorhabdus nematophila ATCC
19061]
Length = 245
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 13/240 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R Y E +++L+ T GR + +S R + LQ + + W
Sbjct: 4 WQ-RAFVLHGRPYSETSLLLDFFTENEGRVRVLAKGVRSRRSHLKGCLQPFTPLLIRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A L+ S+ GL L R L + L+ L
Sbjct: 63 RGEIKTLRDAEP---ISLALPLAGSVLYSGLYVNELLSRVLEQGTAYPALFFDYLQCLQA 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL +IG+G+D C +G + + +
Sbjct: 120 LAASDRTPEYALRRFELALLTSIGYGVDYLHCAGSGESVTDTMTYRYREEKGFIASLIID 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ D +LK+A + + AL+ + RE F + +
Sbjct: 180 NYSFTGYELKALSLGEFPDGVTLKAAKRFI-----RIALKPYLGGKPLKSRELFRQFVRK 234
>gi|221310451|ref|ZP_03592298.1| DNA repair protein RecO [Bacillus subtilis subsp. subtilis str.
168]
gi|221314774|ref|ZP_03596579.1| DNA repair protein RecO [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319697|ref|ZP_03600991.1| DNA repair protein RecO [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323974|ref|ZP_03605268.1| DNA repair protein RecO [Bacillus subtilis subsp. subtilis str.
SMY]
gi|255767577|ref|NP_390406.2| DNA repair protein RecO [Bacillus subtilis subsp. subtilis str.
168]
gi|321312010|ref|YP_004204297.1| DNA repair protein RecO [Bacillus subtilis BSn5]
gi|239938859|sp|P42095|RECO_BACSU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|225185205|emb|CAB14457.2| DNA double strand break repair and homologous recombination factor
[Bacillus subtilis subsp. subtilis str. 168]
gi|320018284|gb|ADV93270.1| DNA repair protein RecO [Bacillus subtilis BSn5]
Length = 255
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + E++ S L Y + R E++P L++ + L
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +++ +L +G +L CV S + G +C
Sbjct: 121 QLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDGTFHFSVRDNGFICHRCFEK 179
>gi|291484973|dbj|BAI86048.1| DNA repair protein RecO [Bacillus subtilis subsp. natto BEST195]
Length = 255
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + E++ S L Y + R E++P L++ + L
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +++ +L +G +L CV S + G +C
Sbjct: 121 QLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDGTFHFSVRDNGFICHRCFEK 179
>gi|312173246|emb|CBX81501.1| DNA repair protein recO (Recombination protein O) [Erwinia
amylovora ATCC BAA-2158]
Length = 245
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 13/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
WQ A +L R + E +++L++ + Q GR + +S R + LQ + V W
Sbjct: 4 WQ-RAFVLHGRPWSETSLLLDLFSEQCGRVRVLAKGARSKRSSLKGALQPFTPLLVRWSG 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A LS + GL L R L EL+ +
Sbjct: 63 RGEVKTLRAAEP---VSLALPLSGTTLYCGLYVNELLSRVLQHETAFSELFFDYLQCIQT 119
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL +L ++G+G+D C +G + +
Sbjct: 120 LAADSGSPEPALRRFELSMLGHLGYGVDFLHCAGSGEEVADSMTYSYREEKGFIASLVAG 179
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ DAD+L++A + T + AL+ + E F
Sbjct: 180 HRSFSGRQLRALSAREFPDADTLRAAKRFT-----RIALKPYLGGKPLKSSELF 228
>gi|254239134|ref|ZP_04932457.1| DNA repair protein RecO [Pseudomonas aeruginosa C3719]
gi|126171065|gb|EAZ56576.1| DNA repair protein RecO [Pseudomonas aeruginosa C3719]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 12/229 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+L R Y E + +++ T GR +R + + + + + WR R
Sbjct: 10 YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARG-KAGALARPFVPLEAEWRGRGELKT- 66
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + LL+ GL L R LP +P E++ L I
Sbjct: 67 --VARLESAGIPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPI 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ E LL+ +G+G L + + + + L +
Sbjct: 125 EPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQVLYQLLPEAGLEPVAQLQ--PGLFQGS 182
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + A +A + L + AL ++ L RE F+ +
Sbjct: 183 ELLSMADADWSAPGALAAAKR----LMRQALAPHLGGRPLVSRELFMNR 227
>gi|116048688|ref|YP_792512.1| DNA repair protein RecO [Pseudomonas aeruginosa UCBPP-PA14]
gi|254245027|ref|ZP_04938349.1| DNA repair protein RecO [Pseudomonas aeruginosa 2192]
gi|296390878|ref|ZP_06880353.1| DNA repair protein RecO [Pseudomonas aeruginosa PAb1]
gi|313105594|ref|ZP_07791860.1| DNA repair protein RecO [Pseudomonas aeruginosa 39016]
gi|122257794|sp|Q02HS4|RECO_PSEAB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|115583909|gb|ABJ09924.1| DNA repair protein RecO [Pseudomonas aeruginosa UCBPP-PA14]
gi|126198405|gb|EAZ62468.1| DNA repair protein RecO [Pseudomonas aeruginosa 2192]
gi|310878362|gb|EFQ36956.1| DNA repair protein RecO [Pseudomonas aeruginosa 39016]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 12/229 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+L R Y E + +++ T GR +R + + + + + WR R
Sbjct: 10 YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARG-KAGALARPFVPLEAEWRGRGELKT- 66
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + LL+ GL L R LP +P E++ L I
Sbjct: 67 --VARLESAGIPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPI 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ E LL+ +G+G L + + + L +
Sbjct: 125 EPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALYQLLPEAGLEPVAQLQ--PGLFQGS 182
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + A +A + L + AL ++ L RE F+ +
Sbjct: 183 ELLSMADADWSAPGALAAAKR----LMRQALAPHLGGRPLVSRELFMNR 227
>gi|306837524|ref|ZP_07470399.1| DNA repair protein RecO [Brucella sp. NF 2653]
gi|306407416|gb|EFM63620.1| DNA repair protein RecO [Brucella sp. NF 2653]
Length = 182
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+G F E L A+L+ + + LYG+Q R LPER+P LY+ L + + P
Sbjct: 1 MGTFTIEPLGFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEHFDDPL 60
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+A+K+L
Sbjct: 61 AAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWADKLLA 120
Query: 186 LPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
LPSF+ D L AF +T YFL ++ + R FL + I
Sbjct: 121 LPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRAI 176
>gi|1303827|dbj|BAA12483.1| YqfI [Bacillus subtilis]
Length = 255
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + E++ S L Y + R E++P L++ + L
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +++ +L +G +L CV S + G +C
Sbjct: 121 QMNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDGTFHFSVRDNGFICHRCFEK 179
>gi|295695441|ref|YP_003588679.1| DNA repair protein RecO [Bacillus tusciae DSM 2912]
gi|295411043|gb|ADG05535.1| DNA repair protein RecO [Bacillus tusciae DSM 2912]
Length = 261
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 2/157 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M Q + I+L YGE + I+ ++T + G+ R + R++ ++Q +
Sbjct: 1 MNVQVEGIVLRGVDYGETHRIVTLLTPEIGKVGAMARGAKRPQSRLRALVQPLVRGTFSL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + + LE + A Y + + RF+ E P +Y+ +L
Sbjct: 61 AYRGQGMAIIRQGQWLEGYRAIQEDLWKHAYAGYAAELVDRFVEEATPDPGVYEFFRQWL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL + + G L +C G
Sbjct: 121 EALAAGKDAEILTRLFELHVCEWAGVRPVLDRCAGCG 157
>gi|145300359|ref|YP_001143200.1| DNA repair protein RecO [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142853131|gb|ABO91452.1| DNA repair protein RecO [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 235
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 11/235 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
A ++ R Y E + ++EV T+ GR R + R + +LQ +L+ ++WR +
Sbjct: 3 SPAFVIHSRPYRETSQLVEVFTQDSGRFTLVARGSRGPRSPLKGLLQPFSLLTISWRGKG 62
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
S L YGL ++ L P E++D L
Sbjct: 63 DLKNLAQVECPDHS---LRLGGDRLFYGLYLNELVYYLLEAHTPFPEVFDAYARALMALA 119
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAE 181
+ E +LL+ +G+ +D Q L + P
Sbjct: 120 DGETPELPLRRFEFLLLQALGYAVDFEYAADDESAIQPELLYGFERELGFVACERAPDPR 179
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGK 235
+ + L E D L A + ++ ALQ RE FL +
Sbjct: 180 TLFLGAHLLAFAEGRFDTPPLLQAAKR----FSRLALQPYLGRRQLKSRELFLKR 230
>gi|330828484|ref|YP_004391436.1| DNA repair protein RecO [Aeromonas veronii B565]
gi|328803620|gb|AEB48819.1| DNA repair protein RecO [Aeromonas veronii B565]
Length = 236
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 75/235 (31%), Gaps = 11/235 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
A ++ R Y E + ++EV T+ GR R + R + +LQ L+ + WR +
Sbjct: 3 TPAFVIHSRPYRETSQLVEVFTQDSGRFTLVARGSRGPRSPLKGLLQPFTLLTIAWRGKG 62
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
S L YGL ++ L P E++D +
Sbjct: 63 DLKNLTQVECPDHS---LRLGGDRLFYGLYLNELVYYLLEAHTPFPEVFDAYARAIMALA 119
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAE 181
+ E +LL+ +G+ +D + L + P
Sbjct: 120 DGETPELPLRRFEFLLLQALGYAVDFEYTADDESPIEPTLLYGFERELGFVACERAPDPR 179
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGK 235
+ + L E D L A + ++ ALQ RE FL +
Sbjct: 180 TLFLGAHLLAFAEGRFDTPPLLQAAKR----FSRLALQPYLGKRQLKSRELFLKR 230
>gi|15595969|ref|NP_249463.1| DNA repair protein RecO [Pseudomonas aeruginosa PAO1]
gi|107100233|ref|ZP_01364151.1| hypothetical protein PaerPA_01001256 [Pseudomonas aeruginosa PACS2]
gi|218893285|ref|YP_002442154.1| DNA repair protein RecO [Pseudomonas aeruginosa LESB58]
gi|12644687|sp|Q9XCX7|RECO_PSEAE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737868|sp|B7UYX0|RECO_PSEA8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|9946661|gb|AAG04161.1|AE004512_4 DNA repair protein RecO [Pseudomonas aeruginosa PAO1]
gi|218773513|emb|CAW29325.1| DNA repair protein RecO [Pseudomonas aeruginosa LESB58]
Length = 233
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 12/229 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+L R Y E + +++ T GR +R + + + + + WR R
Sbjct: 10 YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARG-KAGALARPFVPLEAEWRGRGELKT- 66
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + LL+ GL L R LP +P E++ L I
Sbjct: 67 --VARLESAGVPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPI 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ E LL+ +G+G L + + + L +
Sbjct: 125 EPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALYQLLPEAGLEPVAQLQ--PGLFQGS 182
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + A +A + L + AL ++ L RE F+ +
Sbjct: 183 ELLSMADADWSAPGALAAAKR----LMRQALAPHLGGRPLVSRELFMNR 227
>gi|172056863|ref|YP_001813323.1| DNA repair protein RecO [Exiguobacterium sibiricum 255-15]
gi|229485534|sp|B1YL74|RECO_EXIS2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|171989384|gb|ACB60306.1| DNA repair protein RecO [Exiguobacterium sibiricum 255-15]
Length = 249
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 1/182 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + ++L YGE N I+ ++TR+YG+ R + + + VR +
Sbjct: 1 MIDKAEGLVLRTVVYGESNKIITLLTREYGKLAVMARGAKKPGSRFNAASQPFVRAIYVY 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG+ + + + +K+ + Y + + + L ER P LYD+ L
Sbjct: 61 PRSRGLGQLKSADVITGYSKIRQDVFLMAYAMYLLELADKALDERVPQPALYDLFVDGLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +EL LL+++G L C V G + S GG +CR
Sbjct: 121 AMDEGLDPDVVSFIVELRLLRHLGIAPHLNGCTVCGSVEAPFAFSLNHGGLLCRRHRQED 180
Query: 180 AE 181
Sbjct: 181 EH 182
>gi|212638695|ref|YP_002315215.1| DNA repair protein RecO [Anoxybacillus flavithermus WK1]
gi|212560175|gb|ACJ33230.1| Recombinational DNA repair protein (RecF pathway) [Anoxybacillus
flavithermus WK1]
Length = 268
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 1/191 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR-VNWR 59
M+ + + I++ YGE N I+ + TR++G+ R + + +
Sbjct: 16 MFEKCEGIVIRTIDYGETNKIVTIFTREWGKVAAMARGAKKPSSRLSSVTQIFTYGIFLI 75
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + E+L + L Y I + ER P L+++L L
Sbjct: 76 QKSRGVGSLHQGELLSTMRHIREDIFLTAYASYIIELTDKATEERRPNPYLFELLLQTLT 135
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E+ LL G L C + G + S GG +C
Sbjct: 136 YMNEGLDAEVLTYIYEMKLLPAFGLYPKLDGCAICGEKEGTFAFSIAQGGFLCHRCFEHD 195
Query: 180 AEKMLVLPSFL 190
++ + PS L
Sbjct: 196 PHRIPMTPSVL 206
>gi|306845265|ref|ZP_07477841.1| DNA repair protein RecO [Brucella sp. BO1]
gi|306274424|gb|EFM56231.1| DNA repair protein RecO [Brucella sp. BO1]
Length = 182
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+G F E L A+L+ + + LYG+Q R LPER+P LY+ L + + P
Sbjct: 1 MGTFTIEPLSFAAARLIETPVALYGIQLAAAHLRLLPERDPHRGLYETLRLIIEHFDDPL 60
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
G++ ++ E+M+L+ +GFGLDL +C TG DL++VSPKSG AVCR G P+AEK+L
Sbjct: 61 AAGELLLRFEVMMLEELGFGLDLKECAATGRKDDLIYVSPKSGRAVCREAGAPWAEKLLS 120
Query: 186 LPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
LPSF+ D L AF +T YFL ++ + R FL + I
Sbjct: 121 LPSFVNDTALRASCYDDLDRAFTMTGYFLMRHVWEPRAQTPPDSRSGFLNAVGRAI 176
>gi|241662607|ref|YP_002980967.1| DNA repair protein RecO [Ralstonia pickettii 12D]
gi|309781189|ref|ZP_07675926.1| DNA repair protein RecO [Ralstonia sp. 5_7_47FAA]
gi|240864634|gb|ACS62295.1| DNA repair protein RecO [Ralstonia pickettii 12D]
gi|308920010|gb|EFP65670.1| DNA repair protein RecO [Ralstonia sp. 5_7_47FAA]
Length = 273
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 5/168 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V T YGR + + + +LQ + ++W R
Sbjct: 43 PAFVLHSYPYRETSLIIDVFTPDYGRMALVAKGAKRPHSALRAVLQTFQPLSLSWSGRGD 102
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F+ + L+ LN
Sbjct: 103 VRT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAH 159
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
E +LL+ GF L +C+ Q +
Sbjct: 160 GEPAAFTLRAFERVLLRETGFAAQLDRCIDGEPVQADAEYVYHPERGI 207
>gi|187928025|ref|YP_001898512.1| DNA repair protein RecO [Ralstonia pickettii 12J]
gi|187724915|gb|ACD26080.1| DNA repair protein RecO [Ralstonia pickettii 12J]
Length = 273
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 5/168 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V T YGR + + + +LQ + ++W R
Sbjct: 43 PAFVLHSYPYRETSLIIDVFTPDYGRMALVAKGAKRPHSALRAVLQTFQPLSLSWSGRGD 102
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F+ + L+ LN
Sbjct: 103 VRT---LTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAH 159
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
E +LL+ GF L +C+ Q +
Sbjct: 160 GEPAAFTLRAFERVLLRETGFAAQLDRCIDGEPVQADAEYVYHPERGI 207
>gi|53804479|ref|YP_113918.1| DNA repair protein RecO [Methylococcus capsulatus str. Bath]
gi|67461356|sp|Q608M9|RECO_METCA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|53758240|gb|AAU92531.1| DNA repair protein RecO [Methylococcus capsulatus str. Bath]
Length = 242
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 78/230 (33%), Gaps = 10/230 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRL 62
D A +L R Y E +++LE+ T ++GR + + R +LQ + V+W R
Sbjct: 17 DHAYLLHRRDYRETSLLLELFTLRHGRIGVIAKGARRGRQGFAAVLQPFVPLLVSWSGRG 76
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ L + G L R LP +PC EL+ L
Sbjct: 77 ELANLNHAEA---AGIGVRLQHTALFCGFYLNELLMRLLPPHDPCPELFGTYRGGLETLA 133
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ EL LL+ IG+GL L +G + A A+
Sbjct: 134 AGEDLETALRSFELSLLEAIGYGLQLRVEAESGEAIRPERLYSYRIDAG-PVPAGDEADA 192
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ + ++ + + + A +L + + H RE F
Sbjct: 193 VHGMTLLALRDRRFDTSQTRTEAKRL----MRRIIAHHLNGRALKSRELF 238
>gi|239996016|ref|ZP_04716540.1| DNA repair protein RecO [Alteromonas macleodii ATCC 27126]
Length = 237
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 15/234 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
A +L R Y E + I++ T + GR + ++ + + +LQ +R+ +
Sbjct: 8 AYVLHRRPYRETSYIVDFFTLEEGRVSAVAKGVKNSKSDKKSLLQPFQHLRLQLSGKSEL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L + + R +P +++ L +
Sbjct: 68 KNLRHVES---VSPSINLVGTALFCAMYVNELTNRVMPAGLASDGVHNAYENALLSLRDE 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA----VCRSVGLPYA 180
I Q E LL +G D T V + + A + + P
Sbjct: 125 CDIEVTLRQFEFALLDEMGLLPDFTTDVEYEMPIEETGSYNFQIDAGFVPIPEDMAGPRG 184
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ + L + S K A L L+ I RE F+
Sbjct: 185 MRGFPGQALLSLSQGEFTPLSKKVAKVLCRD-----LLKPLIGEKPLKSRELFM 233
>gi|117618822|ref|YP_855345.1| DNA repair protein RecO [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560229|gb|ABK37177.1| DNA repair protein RecO [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 235
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 11/235 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
A ++ R Y E + ++EV T+ GR R + R + +LQ L+ + WR +
Sbjct: 3 TPAFVIHSRPYRETSQLVEVFTQDSGRFTLVARGSRGPRSPLKGLLQPFTLLTIAWRGKG 62
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
S L YGL ++ L P E++D +
Sbjct: 63 DLKNLTQVECPDHS---LRLGGDRLFYGLYLNELVYYLLEAHTPFPEVFDAYARTIMALA 119
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAE 181
+ E +LL+ +G+ +D Q L + P
Sbjct: 120 DGETPELPLRRFEFLLLQALGYAVDFEYAADDESPIQPELLYGFERELGFVACERAPDPR 179
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENFLGK 235
+ + L E D+ L A + ++ ALQ RE FL +
Sbjct: 180 TLFLGAHLLAFAEGHFDSPPLLQAAKR----FSRLALQPYLGRRQLKSRELFLKR 230
>gi|332140213|ref|YP_004425951.1| DNA repair protein RecO [Alteromonas macleodii str. 'Deep ecotype']
gi|254790504|sp|B4RXN1|RECO_ALTMD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|327550235|gb|AEA96953.1| DNA repair protein RecO [Alteromonas macleodii str. 'Deep ecotype']
Length = 234
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 12/233 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
A +L R Y E + I++ + + GR + ++ + + +LQ +R+ +
Sbjct: 8 AYVLHRRPYRETSYIVDFFSLEEGRISAVAKGVKNSKSDKKSLLQPFQHLRLQLSGKSDL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V + L+ + + R +P+ +Y L +
Sbjct: 68 KNLRHVESVA---PSISLTGTALFCAMYVNELTNRIMPQGLASDGVYSAYEAALLALRDE 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I Q+E LL +G D T V + ++ + + +
Sbjct: 125 ADIEVTLRQLEFALLDEMGLLPDFTSDVEYEMPIEENGRYHFQLDAGFIQIPDDVVGARG 184
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + L + S K A L L+ I RE F+ K
Sbjct: 185 IPGTALLSLSQGEFTPLSKKVAKVLCRD-----LLKPLIGDKPLKSRELFMTK 232
>gi|167837345|ref|ZP_02464228.1| DNA repair protein RecO [Burkholderia thailandensis MSMB43]
Length = 237
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 8 PGFVLHSYPYRETSLVVDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P L+ + L
Sbjct: 68 LRT---LTGAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPPLFQHYLVTLTRLAH 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + VC + +
Sbjct: 125 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPGRLYVFDPQRGVCDAGSDVPSHWP 184
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 185 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 234
>gi|153824252|ref|ZP_01976919.1| DNA repair protein RecO [Vibrio cholerae B33]
gi|126518226|gb|EAZ75451.1| DNA repair protein RecO [Vibrio cholerae B33]
Length = 160
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 5/150 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + + R + LQ + + W +
Sbjct: 9 FVLHRRPYSESSLILDVFSEEYGRVTLMAKGARGKRSNLKGALQPFTPLLLKWSGNGS-- 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + LS + + R L L+ L +
Sbjct: 67 -MKTLRQAEPISLGLPLSGVYLYSAMYINELVDRVLMPEVASPGLFHDYLFALTELAQST 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL LL +G+G+D C TG
Sbjct: 126 NPEPALRRFELALLAAMGYGVDFLHCAGTG 155
>gi|152985424|ref|YP_001350089.1| DNA repair protein RecO [Pseudomonas aeruginosa PA7]
gi|166221905|sp|A6VAK4|RECO_PSEA7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|150960582|gb|ABR82607.1| DNA repair protein RecO [Pseudomonas aeruginosa PA7]
Length = 233
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 72/229 (31%), Gaps = 12/229 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+L R Y E + +++ T GR +R + + + + + WR R
Sbjct: 10 YVLHSRPYKETSALVDFFTA-QGRLRAVLRGARG-KAGALARPFVPLEAEWRGRGELKT- 66
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + LLS GL L R LP +P E++ L +
Sbjct: 67 --VARLESAGIPNLLSGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPL 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ E LL+ +G+G L + + + +
Sbjct: 125 EPLLRAFEWRLLEQLGYGFALDVDIHGRPIEPQALYQLLPEAGL--EPVTQLQPGLFQGV 182
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + A +A + L + AL ++ L RE F+ +
Sbjct: 183 ELLSMADADWSAPGALAAAKR----LMRQALAPHLGGRPLVSRELFMNR 227
>gi|253576084|ref|ZP_04853416.1| DNA repair protein RecO [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844427|gb|EES72443.1| DNA repair protein RecO [Paenibacillus sp. oral taxon 786 str. D14]
Length = 249
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 2/192 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ + T G+ VR + + + + Q +
Sbjct: 1 MLYRVEGIVIRSMDYGEGNKIITLCTETSGKIGVLVRGAKKVKSRHGALTQPFTHGEYVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + E++ESH + L Y + L + L + E + L L
Sbjct: 61 FRQNGGLGTLNQGEMIESHFSLREDLFLAAYASYACELLDKTLQDEEVGSFWFTQLKACL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + E+ +L+ G+G CV G D +VSP+ GG +CRS
Sbjct: 121 DGLSSGKDPQIVTHLFEMKILQAAGYGPSFESCVSCGRVDDSPYVSPRLGGRLCRSCRHQ 180
Query: 179 YAEKMLVLPSFL 190
M V P L
Sbjct: 181 DPAAMQVTPGVL 192
>gi|327479796|gb|AEA83106.1| DNA repair protein RecO [Pseudomonas stutzeri DSM 4166]
Length = 229
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R Y E + ++++ T GR +R + + +++ + V R +
Sbjct: 4 PAFVLHSRPYKESSALVDLFTP-QGRLRAVMRAARG-KAGSLIRPFVSLEVELRGKSELK 61
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L G+ L R LP + L++ L
Sbjct: 62 T---VARLESAGPAHWLDGQALFSGMYLNELLIRLLPAEDAHPALFEHYVATLPALAEHR 118
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+G L + + VG
Sbjct: 119 PLEPLLRAFEWRLLDELGYGFALDIDIAGQPIDAQRLYRLVPDAGLEPVVGFQ-PGLFNG 177
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
E +L +A + L + AL ++ L RE F+
Sbjct: 178 AELLAMAEADWQVPGALAAAKR-----LMRQALAPHLGGRPLVSRELFMNL 223
>gi|146281617|ref|YP_001171770.1| DNA repair protein RecO [Pseudomonas stutzeri A1501]
gi|172045571|sp|A4VIX7|RECO_PSEU5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145569822|gb|ABP78928.1| DNA repair protein RecO [Pseudomonas stutzeri A1501]
Length = 236
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R Y E + ++++ T GR +R + + +++ + V R +
Sbjct: 11 PAFVLHSRPYKESSALVDLFTP-QGRLRAVMRAARG-KAGSLIRPFVSLEVELRGKSELK 68
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L G+ L R LP + L++ L
Sbjct: 69 T---VARLESAGPAHWLDGQALFSGMYLNELLIRLLPAEDAHPALFEHYVATLPALAEHR 125
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+G L + + VG
Sbjct: 126 PLEPLLRAFEWRLLDELGYGFALDIDIAGQPIDAQRLYRLVPDAGLEPVVGFQ-PGLFNG 184
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
E +L +A + L + AL ++ L RE F+
Sbjct: 185 AELLAMAEADWQVPGALAAAKR-----LMRQALAPHLGGRPLVSRELFMNL 230
>gi|153839962|ref|ZP_01992629.1| DNA repair protein RecO [Vibrio parahaemolyticus AQ3810]
gi|149746521|gb|EDM57510.1| DNA repair protein RecO [Vibrio parahaemolyticus AQ3810]
Length = 162
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L R Y E ++IL+V + +YGR + +S R + LQ + + W + +
Sbjct: 13 FVLHRRPYSESSLILDVFSEEYGRITLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS-- 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L + + R L P L+ L
Sbjct: 71 -MKTLRQAEPISLGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQCE 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL LL ++G+G+D C TG
Sbjct: 130 NPEPALRRFELALLSSMGYGVDFLHCAGTG 159
>gi|288941440|ref|YP_003443680.1| DNA repair protein RecO [Allochromatium vinosum DSM 180]
gi|288896812|gb|ADC62648.1| DNA repair protein RecO [Allochromatium vinosum DSM 180]
Length = 243
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 12/229 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
A +L R YG +++LE++ GR + + R +LQ + + R
Sbjct: 10 AFVLHRREYGNTSLLLEILGAGQGRCAAIAKGARRPRRTASALLQPFQPLWLAMTGRGEV 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V E+ L + L G L R L +P L+ L+
Sbjct: 70 RT---LTVVEEAGAPLALQGASLLAGFYLNELLLRMLARHDPHDALFVFYQSTLSHLAEA 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E LL +G+GL L + V G + C G ++
Sbjct: 127 DDLETPLRHFECRLLAELGYGLRLDRVVDDGAPVTADAVYVYERERGPCYPSGPARGPRV 186
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLREN 231
++ + + + A L ++ L+ ++ RE
Sbjct: 187 SGATLLALAHDEPLAGEQRREART-----LLRHVLEPHLGDRPLKSREL 230
>gi|328554262|gb|AEB24754.1| DNA repair protein RecO [Bacillus amyloliquefaciens TA208]
gi|328912659|gb|AEB64255.1| DNA double strand break repair and recombination factor [Bacillus
amyloliquefaciens LL3]
Length = 255
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E++ S L Y + E++P L++++
Sbjct: 61 QRTSGLGTLQQGEMILSMRTIREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +++ +L +G +L CV S + G +C
Sbjct: 121 RLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDGTFHFSVRDNGFICHRCFGK 179
>gi|312795544|ref|YP_004028466.1| DNA repair protein recO [Burkholderia rhizoxinica HKI 454]
gi|312167319|emb|CBW74322.1| DNA repair protein recO [Burkholderia rhizoxinica HKI 454]
Length = 308
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 15/238 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V TR +GR + + + +LQ + ++W +
Sbjct: 75 PGFVLHTYPYRETSLIIDVFTRMHGRLALVAKGAKRPHSALRGVLQTFQPLALSWTGKSE 134
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L+ L G L RF +P L+D + L
Sbjct: 135 ---MRTLTRAEWVGGMRPLAGDALLCGFYVNELLVRFCAREDPHTALFDHYLLTLTRLAH 191
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
++ E +LL+ G+ + L + V VC L
Sbjct: 192 DEPAVQVLRSFERVLLRETGYAMSLDRTVARQNVVAGRSYVFDPERGVCDVEMLEPDAHA 251
Query: 184 LVLPS-----FLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
L P L E + + L ++ L + L R+ +
Sbjct: 252 LRGPVIAGQTLLDMERDDYSRAQTVAQSKT----LMRFLLNTYLGGAPLATRQILIDL 305
>gi|148263002|ref|YP_001229708.1| DNA repair protein RecO [Geobacter uraniireducens Rf4]
gi|189039657|sp|A5GBB7|RECO_GEOUR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146396502|gb|ABQ25135.1| DNA replication and repair protein RecO [Geobacter uraniireducens
Rf4]
Length = 244
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
Q +AI+LGV YGE + I+ + T ++G+ G R+ + R + L+ +R++
Sbjct: 3 NIQCEAIVLGVMDYGEADKIVTLFTLEHGKLKGLARSAKKSRKRFGGALEPFARLRLHLA 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ + +++ + + + R +PE E L+ +L +L+
Sbjct: 63 MKVGLST-LNGADIVTIFPHIRQDLVKIGHAAYACELVERLVPEAEQNHRLFRLLAAYLD 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
E LLK +G+ L++C
Sbjct: 122 HLDQFQHDPSDRRFFEANLLKVVGYQPALSRCAACD 157
>gi|307823641|ref|ZP_07653870.1| DNA repair protein RecO [Methylobacter tundripaludum SV96]
gi|307735626|gb|EFO06474.1| DNA repair protein RecO [Methylobacter tundripaludum SV96]
Length = 249
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 9/205 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
A IL R Y E ++I++V+TR +GR + + + + +LQ + V++ +
Sbjct: 20 PAFILRHRKYRETSLIIDVLTRDFGRISLLAKGVRKAKSKTAGMLQPFIPLLVSYFGKAE 79
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ G + FL + +P E++ L+C
Sbjct: 80 LKTLTDVEM---IQPFSEIKGLALYCGFYINELVGYFLHKYDPHPEVFGHYGECLSCLSD 136
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ Q EL L++ G+GL L + L +G V P++ K
Sbjct: 137 GPNVEAALRQFELNLMECAGYGLQLEYDDNESPIESLKKYEFNAGKGAVEVVDGPFSGKT 196
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQL 208
L + D L A L
Sbjct: 197 L----LALSSGELTDPQVLSEAKTL 217
>gi|238897757|ref|YP_002923436.1| gap repair protein, part of RecFOR complex [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|259563680|sp|C4K3Z5|RECO_HAMD5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229465514|gb|ACQ67288.1| gap repair protein, part of RecFOR complex [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 234
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 74/229 (32%), Gaps = 12/229 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
IL RSY E ++IL+++T GR + R + LQ + + W + A
Sbjct: 9 FILHRRSYSETSLILDLLTENEGRISLIAKGALRPRSALKGYLQPFTPLLLRWSGKSAIK 68
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
A L+ GL L R L L+ L
Sbjct: 69 TLCGAEP---ISIAVPLTGIFLYSGLYVNELLSRLLLPNIDYRALFFDYLDCLEALASAQ 125
Query: 126 VI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ + EL LL ++G+G+D CV TG +
Sbjct: 126 DTSERALRRFELALLTHLGYGVDFLHCVETGEPVVAQMTYRYQHEIGFIRSPEDDSLGFT 185
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ D ++LK+A + T + AL+ ++ H R F
Sbjct: 186 GHQLQSLAKGAFYDQETLKAAKRFT-----RIALKPHLGHRPLNSRSLF 229
>gi|76810334|ref|YP_334274.1| DNA repair protein RecO [Burkholderia pseudomallei 1710b]
gi|161723199|ref|YP_109019.2| DNA repair protein RecO [Burkholderia pseudomallei K96243]
gi|254191247|ref|ZP_04897751.1| DNA repair protein RecO [Burkholderia pseudomallei Pasteur 52237]
gi|254195774|ref|ZP_04902200.1| DNA repair protein RecO [Burkholderia pseudomallei S13]
gi|76579787|gb|ABA49262.1| DNA repair protein RecO [Burkholderia pseudomallei 1710b]
gi|157938919|gb|EDO94589.1| DNA repair protein RecO [Burkholderia pseudomallei Pasteur 52237]
gi|169652519|gb|EDS85212.1| DNA repair protein RecO [Burkholderia pseudomallei S13]
Length = 286
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 57 PAFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 116
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 117 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 173
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 174 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPDKLYVFDPQRGVRDAGSDAPSHWP 233
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 234 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 283
>gi|53725349|ref|YP_102341.1| DNA repair protein RecO [Burkholderia mallei ATCC 23344]
gi|52428772|gb|AAU49365.1| Recombination protein O [Burkholderia mallei ATCC 23344]
Length = 286
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 57 PAFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 116
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 117 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 173
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 174 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPDKLYVFDPQRGVRDAGSDAPSHWP 233
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 234 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 283
>gi|67641138|ref|ZP_00439923.1| DNA repair protein RecO [Burkholderia mallei GB8 horse 4]
gi|121600755|ref|YP_993768.1| DNA repair protein RecO [Burkholderia mallei SAVP1]
gi|124384477|ref|YP_001028766.1| DNA repair protein RecO [Burkholderia mallei NCTC 10229]
gi|126448568|ref|YP_001081326.1| DNA repair protein RecO [Burkholderia mallei NCTC 10247]
gi|167000781|ref|ZP_02266588.1| DNA repair protein RecO [Burkholderia mallei PRL-20]
gi|254178235|ref|ZP_04884890.1| DNA repair protein RecO [Burkholderia mallei ATCC 10399]
gi|254199234|ref|ZP_04905600.1| DNA repair protein RecO [Burkholderia mallei FMH]
gi|254205541|ref|ZP_04911893.1| DNA repair protein RecO [Burkholderia mallei JHU]
gi|254357708|ref|ZP_04973981.1| DNA repair protein RecO [Burkholderia mallei 2002721280]
gi|61214835|sp|Q62LS7|RECO_BURMA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|121229565|gb|ABM52083.1| DNA repair protein RecO [Burkholderia mallei SAVP1]
gi|124292497|gb|ABN01766.1| DNA repair protein RecO [Burkholderia mallei NCTC 10229]
gi|126241438|gb|ABO04531.1| DNA repair protein RecO [Burkholderia mallei NCTC 10247]
gi|147748830|gb|EDK55904.1| DNA repair protein RecO [Burkholderia mallei FMH]
gi|147752984|gb|EDK60049.1| DNA repair protein RecO [Burkholderia mallei JHU]
gi|148026835|gb|EDK84856.1| DNA repair protein RecO [Burkholderia mallei 2002721280]
gi|160699274|gb|EDP89244.1| DNA repair protein RecO [Burkholderia mallei ATCC 10399]
gi|238522003|gb|EEP85450.1| DNA repair protein RecO [Burkholderia mallei GB8 horse 4]
gi|243063331|gb|EES45517.1| DNA repair protein RecO [Burkholderia mallei PRL-20]
Length = 275
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 46 PAFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 105
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 106 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 162
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 163 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPDKLYVFDPQRGVRDAGSDAPSHWP 222
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 223 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 272
>gi|126440516|ref|YP_001059798.1| DNA repair protein RecO [Burkholderia pseudomallei 668]
gi|126452734|ref|YP_001067085.1| DNA repair protein RecO [Burkholderia pseudomallei 1106a]
gi|134277090|ref|ZP_01763805.1| DNA repair protein RecO [Burkholderia pseudomallei 305]
gi|167720556|ref|ZP_02403792.1| DNA repair protein RecO [Burkholderia pseudomallei DM98]
gi|167816750|ref|ZP_02448430.1| DNA repair protein RecO [Burkholderia pseudomallei 91]
gi|167825157|ref|ZP_02456628.1| DNA repair protein RecO [Burkholderia pseudomallei 9]
gi|167846654|ref|ZP_02472162.1| DNA repair protein RecO [Burkholderia pseudomallei B7210]
gi|167895242|ref|ZP_02482644.1| DNA repair protein RecO [Burkholderia pseudomallei 7894]
gi|167903625|ref|ZP_02490830.1| DNA repair protein RecO [Burkholderia pseudomallei NCTC 13177]
gi|167911874|ref|ZP_02498965.1| DNA repair protein RecO [Burkholderia pseudomallei 112]
gi|167919871|ref|ZP_02506962.1| DNA repair protein RecO [Burkholderia pseudomallei BCC215]
gi|217421115|ref|ZP_03452620.1| DNA repair protein RecO [Burkholderia pseudomallei 576]
gi|226199969|ref|ZP_03795519.1| DNA repair protein RecO [Burkholderia pseudomallei Pakistan 9]
gi|237813193|ref|YP_002897644.1| DNA repair protein RecO [Burkholderia pseudomallei MSHR346]
gi|242316189|ref|ZP_04815205.1| DNA repair protein RecO [Burkholderia pseudomallei 1106b]
gi|254184212|ref|ZP_04890802.1| DNA repair protein RecO [Burkholderia pseudomallei 1655]
gi|254258139|ref|ZP_04949193.1| DNA repair protein RecO [Burkholderia pseudomallei 1710a]
gi|254296873|ref|ZP_04964326.1| DNA repair protein RecO [Burkholderia pseudomallei 406e]
gi|61214848|sp|Q63S98|RECO_BURPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361449|sp|Q3JQ79|RECO_BURP1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|52210447|emb|CAH36430.1| DNA repair protein RecO [Burkholderia pseudomallei K96243]
gi|126220009|gb|ABN83515.1| DNA repair protein RecO [Burkholderia pseudomallei 668]
gi|126226376|gb|ABN89916.1| DNA repair protein RecO [Burkholderia pseudomallei 1106a]
gi|134250740|gb|EBA50819.1| DNA repair protein RecO [Burkholderia pseudomallei 305]
gi|157807319|gb|EDO84489.1| DNA repair protein RecO [Burkholderia pseudomallei 406e]
gi|184214743|gb|EDU11786.1| DNA repair protein RecO [Burkholderia pseudomallei 1655]
gi|217396527|gb|EEC36544.1| DNA repair protein RecO [Burkholderia pseudomallei 576]
gi|225928025|gb|EEH24062.1| DNA repair protein RecO [Burkholderia pseudomallei Pakistan 9]
gi|237503117|gb|ACQ95435.1| DNA repair protein RecO [Burkholderia pseudomallei MSHR346]
gi|242139428|gb|EES25830.1| DNA repair protein RecO [Burkholderia pseudomallei 1106b]
gi|254216828|gb|EET06212.1| DNA repair protein RecO [Burkholderia pseudomallei 1710a]
Length = 275
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 46 PAFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 105
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 106 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 162
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 163 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPDKLYVFDPQRGVRDAGSDAPSHWP 222
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 223 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 272
>gi|186475608|ref|YP_001857078.1| DNA repair protein RecO [Burkholderia phymatum STM815]
gi|184192067|gb|ACC70032.1| DNA repair protein RecO [Burkholderia phymatum STM815]
Length = 336
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + +NW +
Sbjct: 107 PAFVLHSYPYRETSLIIDVLSRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLNWSGKSE 166
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +FL +P +L+ + L
Sbjct: 167 ---MRTLTGAEWVGGMLPLTGDALLCGFYVNELLVKFLAREDPHPQLFHHYVVTLTRLAH 223
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + +
Sbjct: 224 DEPPVQVLRSFERVLLRETGYAMSLNRTVARKAVVPDGRYVFDPERGVREASDEYPSNWP 283
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 284 VISGQTLLDMEQDDYHRAQTIAQSKT----LMRFLLNIYLGGTPLATRQILIDL 333
>gi|311069128|ref|YP_003974051.1| DNA repair protein RecO [Bacillus atrophaeus 1942]
gi|310869645|gb|ADP33120.1| DNA repair protein RecO [Bacillus atrophaeus 1942]
Length = 255
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 1/188 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + E++ S L Y + + E++P L++++ L
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I +++ +L IG +L CV S + G +C
Sbjct: 121 RLNEGIDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDGTFHFSVRDNGFICHRCFGKD 180
Query: 180 AEKMLVLP 187
K+ + P
Sbjct: 181 PYKVPITP 188
>gi|332994406|gb|AEF04461.1| DNA repair protein RecO [Alteromonas sp. SN2]
Length = 236
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 15/235 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
A +L R+Y E + I++ T + G+ + ++ + + +LQ +++ +
Sbjct: 7 TAFVLHRRAYRETSYIVDFFTLEQGKVSAVAKGVRNSKSDKKSLLQPFQALKLQLAGKSD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L + + R +P +++ L
Sbjct: 67 LKNLRHVESTA---PSINLVGTPLFCAMYLNELTNRIMPAGLASDAVFEAYGQALTALFS 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVC---RSVGLPY 179
I + EL LL +G D T+ V + + + C V +
Sbjct: 124 DDDIEITLRKFELSLLDEMGLLPDFTEDVEYEMPIEAEKHYVLQPEFGFCALPDDVSNSH 183
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
K L + L + S + L + L+ I RE F+
Sbjct: 184 TRKGLPGSALLALAQGEFTPMS-----KRVAKVLCRDLLKPLIGDKPLKSRELFV 233
>gi|325523760|gb|EGD02014.1| DNA repair protein RecO [Burkholderia sp. TJI49]
Length = 279
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 50 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 109
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F +P L++ + L
Sbjct: 110 VRT---LTGAEWVGGMLPLGGDALLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 166
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 167 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPERRYVFDPERGVRNADDDVPSHWP 226
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 227 VISGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 276
>gi|206559400|ref|YP_002230161.1| DNA repair protein RecO [Burkholderia cenocepacia J2315]
gi|206561198|ref|YP_002231963.1| DNA repair protein RecO [Burkholderia cenocepacia J2315]
gi|198035438|emb|CAR51314.1| DNA repair protein RecO 2 [Burkholderia cenocepacia J2315]
gi|198037240|emb|CAR53162.1| DNA repair protein RecO 1 [Burkholderia cenocepacia J2315]
Length = 278
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 49 PAFVLHSYPYRETSLIVDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F +P L++ + L
Sbjct: 109 VRT---LTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 166 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPERRYVFDPERGVRNADDDVPSHWP 225
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 226 VITGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 275
>gi|107022212|ref|YP_620539.1| DNA repair protein RecO [Burkholderia cenocepacia AU 1054]
gi|116689158|ref|YP_834781.1| DNA repair protein RecO [Burkholderia cenocepacia HI2424]
gi|170732446|ref|YP_001764393.1| DNA repair protein RecO [Burkholderia cenocepacia MC0-3]
gi|254245909|ref|ZP_04939230.1| Recombination protein O, RecO [Burkholderia cenocepacia PC184]
gi|119361448|sp|Q1BXT9|RECO_BURCA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|105892401|gb|ABF75566.1| DNA replication and repair protein RecO [Burkholderia cenocepacia
AU 1054]
gi|116647247|gb|ABK07888.1| DNA replication and repair protein RecO [Burkholderia cenocepacia
HI2424]
gi|124870685|gb|EAY62401.1| Recombination protein O, RecO [Burkholderia cenocepacia PC184]
gi|169815688|gb|ACA90271.1| DNA repair protein RecO [Burkholderia cenocepacia MC0-3]
Length = 278
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 49 PAFVLHSYPYRETSLIVDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F +P L++ + L
Sbjct: 109 VRT---LTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 166 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPERRYVFDPERGVRNADDDVPSHWP 225
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 226 VITGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 275
>gi|260752832|ref|YP_003225725.1| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|283856306|ref|YP_162408.2| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552195|gb|ACV75141.1| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|283775302|gb|AAV89297.2| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis ZM4]
Length = 254
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 11/243 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ A++L R + E I+ ++T + G G+++ S +P+L GN V+ +WR ++
Sbjct: 4 ISEPALLLTSRFHSENGAIIRLLT-EQGLLTGYIQGAHSRYRRPLLFVGNYVQASWRDKV 62
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPL-FRFLPEREPCLELYDMLNIFLNCH 121
++L E L ++ L L I P LPE +P L+ L L
Sbjct: 63 GRSLPSINIE-LRHSRGLIMEHPLAALFLSWICPFTASVLPEGQPEPYLFQNLKRLLAII 121
Query: 122 ---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P + V+ EL+LL +G+GL L++C++TG L WVSPK AV R
Sbjct: 122 EKTDEPVLWMTELVRFELLLLSELGYGLHLSRCIITGQEACLDWVSPKHHAAVSRQAAQG 181
Query: 179 YAEKMLVLPSFL-----WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+ +K+LVLP FL D ++L+ +L+ +FL + +R+ +
Sbjct: 182 HEKKLLVLPDFLKAPFSVSCLDLPDQEALQQGLKLSGFFLRFHFEAAYYHRFFGVRQRLI 241
Query: 234 GKL 236
Sbjct: 242 KNF 244
>gi|82702880|ref|YP_412446.1| DNA repair protein RecO [Nitrosospira multiformis ATCC 25196]
gi|119361469|sp|Q2Y867|RECO_NITMU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|82410945|gb|ABB75054.1| DNA replication and repair protein RecO [Nitrosospira multiformis
ATCC 25196]
Length = 242
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 15/240 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I+EV T+ GR + + + +L+A + ++W +
Sbjct: 12 PAFVLHSYPYLETSLIVEVFTQNSGRIAVVAKGAKRPTSPLRGLLRAFQPLLLSWGGKSE 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L + + G L R L +P L+ L+
Sbjct: 72 LRTLH---KAEWQGGQLPLQGTALICGFYLNELLIRLLHRNDPHERLFACYQEALSDLST 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
S I + E LL+ +G+ L L V +G + P A
Sbjct: 129 ASDYIPILRRFEQRLLQEMGYALTLDHDVSSGKP------IKPTQMYCYEIERGPIASSN 182
Query: 184 LVLPSFLWKEEQTI---DADSLKSAF-QLTDYFLNKYALQHNIIHCHLLRENFLGKLLEL 239
P L +T+ + +L L ++ L H + L L + +L
Sbjct: 183 GSCPFNLELSGKTLLDMYQGDYLAPLTRLQSRILMRHLLSHYLGDKPLHTRQLLKEFQQL 242
>gi|56459916|ref|YP_155197.1| recombinational DNA repair protein RecO, RecF pathway [Idiomarina
loihiensis L2TR]
gi|61214745|sp|Q5R108|RECO_IDILO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56178926|gb|AAV81648.1| Recombinational DNA repair protein RecO, RecF pathway [Idiomarina
loihiensis L2TR]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 10/231 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A++L Y E ++IL++ T GR + + + + + Q + ++ R
Sbjct: 4 RALVLHRWDYQETSLILDLFTEDKGRVRVVAKGAKRPKSPWRGLAQPFMPLLAEFQGRSD 63
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ LL G + R +P EL++ L
Sbjct: 64 LKTLTLLEPQ-QTTQKLLLQGDKLYSGFYLNELIQRLVPTEAEAPELFESYLSALQNMTN 122
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLPYAEK 182
+ Q E LL+++G D TG D W +
Sbjct: 123 SERVEPALRQFEWQLLQHLGAAFDWHYDADTGNVLSDSKWCYFIPDHGFVTQAR---DNQ 179
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
++ D D ++ +L Y + + AL + RE F
Sbjct: 180 QRAYSVADIQKLAAWDVDD-ENRLRLLKYIM-RDALAVYLGDKPLRSRELF 228
>gi|237748851|ref|ZP_04579331.1| DNA repair protein recO [Oxalobacter formigenes OXCC13]
gi|229380213|gb|EEO30304.1| DNA repair protein recO [Oxalobacter formigenes OXCC13]
Length = 265
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 10/237 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
+ +L Y E +++++V TR YGR + + R++ +LQ + + W
Sbjct: 33 IVEQPGFVLHSYVYKESSLVVDVFTRDYGRVALVAKGAKRPTSRLRGVLQTFQPLSIGWT 92
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ L +S LYG L + +P L+D LN
Sbjct: 93 GKSELRT---LTTAEWIGGMIPLENSALLYGFYLNELLLKLTAREDPHHLLFDHYVKALN 149
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LLK G DL+ T D V R +
Sbjct: 150 RLATSESAQTVLRIFELALLKETGVAADLSIDTTTRQKVDPEEVYVVDPENGPRPARMGD 209
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ + L + QL L +Y L H++ L R+ L
Sbjct: 210 EAPRMAGKTLLDMVCEDYSDQQ----TQLQSKLLMRYLLAHHLNGVPLQTRKILLDL 262
>gi|114567078|ref|YP_754232.1| DNA repair protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|119361496|sp|Q0AWP3|RECO_SYNWW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|114338013|gb|ABI68861.1| DNA replication and repair protein RecO [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 250
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 11/227 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
MY + AI++ Y E + ++ + G+ R + R + +Q + +
Sbjct: 1 MYLRSRAIVIKNMDYRESDKLVTIFCEHEGKMKAVARGIKKPRSSLRACVQPFCHSSL-F 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
SR + ++L+ + LY L + L + L E LY L
Sbjct: 60 FSRGKGMNLITQGKLLDFYGNTREDFERSLYALYLMELLDKSLMEGVAIPRLYTSTLEVL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + E+ LL N+G+ L CV+ G DL S GG +CR
Sbjct: 120 SHLNHSGYNPMLIRYFEMNLLVNLGYSPLLDHCVLCGKKDDLKVFSLPDGGMLCRDCSYQ 179
Query: 179 YAE-----KMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFLNKYA 217
+ K + L + + + A + +YFL KY
Sbjct: 180 ASGAVSLSKETLALISLLGRSRLATVERVRVSNKAQKELEYFLEKYL 226
>gi|167581153|ref|ZP_02374027.1| DNA repair protein RecO [Burkholderia thailandensis TXDOH]
Length = 275
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 46 PGFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 105
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 106 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 162
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL--PYAE 181
++ E +LL+ G+ + L + V + V + P+
Sbjct: 163 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPGKLYVFDPERGVRDADSDVPPHWP 222
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +E+ A ++ + L + LN Y R+ +
Sbjct: 223 VIAGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 272
>gi|167619238|ref|ZP_02387869.1| DNA repair protein RecO [Burkholderia thailandensis Bt4]
gi|257138460|ref|ZP_05586722.1| DNA repair protein RecO [Burkholderia thailandensis E264]
gi|119361451|sp|Q2SXT2|RECO_BURTA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 275
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 46 PGFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 105
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 106 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 162
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL--PYAE 181
++ E +LL+ G+ + L + V + V + P+
Sbjct: 163 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPGKLYVFDPERGVRDADSDVPPHWP 222
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +E+ A ++ + L + LN Y R+ +
Sbjct: 223 VIAGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 272
>gi|83720218|ref|YP_442267.1| DNA repair protein RecO [Burkholderia thailandensis E264]
gi|83654043|gb|ABC38106.1| DNA repair protein RecO [Burkholderia thailandensis E264]
Length = 286
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 57 PGFVLHSYPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 116
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L+ + L
Sbjct: 117 LRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAH 173
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL--PYAE 181
++ E +LL+ G+ + L + V + V + P+
Sbjct: 174 GEPPVQVLRSFERVLLRETGYAMTLKRTVARRAVEPGKLYVFDPERGVRDADSDVPPHWP 233
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +E+ A ++ + L + LN Y R+ +
Sbjct: 234 VIAGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 283
>gi|119476419|ref|ZP_01616770.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2143]
gi|119450283|gb|EAW31518.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2143]
Length = 239
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-----SHRMQPILQAGNLV 54
M + A IL R++ + ++I++ ++ YGR G V+ + + + + + Q +
Sbjct: 1 MRIESQPAYILHTRNFRDSSLIVDFLSADYGRVSGVVKGVRATSKSAKQRRGLSQPFVPL 60
Query: 55 RVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
++W + L GL L R L + + +Y +
Sbjct: 61 LISWSGKSDLKTIIQMEPR---GAPLQLQGKRLFSGLYVNELLSRLLQQDDQHTAIYTLY 117
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR- 173
C S I + Q EL L++ +G+GLD T+ T G
Sbjct: 118 EWIAKCLVGDSEIDIVLRQFELQLMEYLGYGLDFTQEAETDNPIIPDRYYVYRAGEGLFA 177
Query: 174 ------SVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH- 226
+ + L ++ A + + AL+ ++
Sbjct: 178 VPDAELASRGHLVNRTFQGEDLLAIASGAFTDNARHVAKLIC-----RQALRLHLGEKPL 232
Query: 227 LLRENF 232
RE F
Sbjct: 233 KSRELF 238
>gi|169829165|ref|YP_001699323.1| DNA repair protein RecO [Lysinibacillus sphaericus C3-41]
gi|168993653|gb|ACA41193.1| DNA repair protein recO (Recombination protein O) [Lysinibacillus
sphaericus C3-41]
Length = 272
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 9/246 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L VR+YGE N I+ ++TR+ G+ R + + +
Sbjct: 11 MLHKWEGIVLKVRAYGESNKIVTLLTREAGKVATMARGAKKPSSRLASVTQPFTYGMFMV 70
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G + E L S Y + + R + E +P +D+L L
Sbjct: 71 QHHTGMGTLQQGEHLNSMRHIREDIMATAYASYIMELVERVVEEGKPEPFAFDVLLQALQ 130
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL-- 177
+ I + E +L G L C G S GG +C
Sbjct: 131 AIEDGYDPESITLFAEWKMLPYTGVQPILHACAACGAVDGEFAFSFAQGGFLCHRCYQHD 190
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA--FQLTDYFLNK---YALQHNIIHCHLLRENF 232
PY ++ L + T+ D + + T YF+ K + R F
Sbjct: 191 PYIIRLTPTQLKLIRMFYTVPIDQIGKIELKKETKYFIKKIITTIYEEQTGIRFKTR-KF 249
Query: 233 LGKLLE 238
+ +L
Sbjct: 250 IEQLER 255
>gi|126652273|ref|ZP_01724452.1| DNA repair protein RecO [Bacillus sp. B14905]
gi|126591005|gb|EAZ85117.1| DNA repair protein RecO [Bacillus sp. B14905]
Length = 262
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 9/246 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L VR+YGE N I+ ++TR+ G+ R + + +
Sbjct: 1 MLHKWEGIVLKVRAYGESNKIVTLLTREAGKVATMARGAKKPSSRLASVTQPFTYGMFMV 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G + E L S Y + + R + E +P +D+L L
Sbjct: 61 QHHTGMGTLQQGEHLNSMRHIREDIMATAYASYIMELVERVVEEGKPEPFAFDVLLQALQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL-- 177
+ I + E +L G L C G S GG +C
Sbjct: 121 AIEDGYDPESITLFAEWKMLPYTGVQPILHACAACGAVDGEFAFSFAQGGFLCHRCYQHD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA--FQLTDYFLNK---YALQHNIIHCHLLRENF 232
PY ++ L + T+ D + + T YF+ K + R F
Sbjct: 181 PYIIRLTPTQLKLIRMFYTVPIDQIGKIELKKETKYFIKKIITTIYEEQTGIRFKTR-KF 239
Query: 233 LGKLLE 238
+ +L
Sbjct: 240 IEQLER 245
>gi|241761300|ref|ZP_04759388.1| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241374207|gb|EER63704.1| DNA repair protein RecO [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 254
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 11/243 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ A++L R + E I+ ++T + G G+++ S +P+L GN V+ +WR ++
Sbjct: 4 ISEPALLLTSRFHSENGAIIRLLT-EQGLLTGYIQGAHSRYRRPLLFVGNYVQASWRDKV 62
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPL-FRFLPEREPCLELYDMLNIFLNCH 121
++L E L ++ L L I P LPE +P L+ L L
Sbjct: 63 GRSLPSINIE-LRHSRGLIMEHPLAALFLSWICPFTASVLPEGQPEPYLFQNLKRLLAII 121
Query: 122 ---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P + V+ EL+LL +G+GL L++C++TG L WVSPK AV R
Sbjct: 122 EKTDEPVLWMTELVRFELLLLSELGYGLHLSRCIITGQEACLDWVSPKHHAAVSRQAAQG 181
Query: 179 YAEKMLVLPSFL-----WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+ +K+LVLP FL D +SL+ +L+ +FL + +R+ +
Sbjct: 182 HEKKLLVLPDFLKAPFSVSCLDLPDQESLQQGLKLSGFFLRFHFEAAYYHRFFWVRQRLI 241
Query: 234 GKL 236
Sbjct: 242 KNF 244
>gi|158320288|ref|YP_001512795.1| DNA repair protein RecO [Alkaliphilus oremlandii OhILAs]
gi|172048003|sp|A8MG71|RECO_ALKOO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|158140487|gb|ABW18799.1| DNA repair protein RecO [Alkaliphilus oremlandii OhILAs]
Length = 246
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 21/239 (8%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M + IL R +GE + IL + TR+ G+ + + + + +
Sbjct: 1 MLITTEGFILKNRKFGETDSILTIFTRKAGKITAIAKGARRPKSNLLAGIQPFCYSEFVL 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + E E Y + + E + L+++ L
Sbjct: 61 YKGKNMYTVSQCEAKEIFYPLREDLKRLSYASYLVELVEAVTTEGQTNHRLFNLFGKTLF 120
Query: 120 CHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP-------KSGGAV 171
K + I I E+ L+ +G+ L CV + W S
Sbjct: 121 LLKKSDIEINPIVRAFEIKLMNYLGYKPQLMSCVNCDSKETTAWKFSATEGGLLCSSCYS 180
Query: 172 CRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY-------FLNKYALQHNII 223
+ + + L FL + D ++ +++D+ L +Y L H
Sbjct: 181 ADLFAMKISNTAVKLAIFLLMK----DITEVQK-LKISDHLNEELKKILKQYILTHTNK 234
>gi|78224139|ref|YP_385886.1| recombination protein O, RecO [Geobacter metallireducens GS-15]
gi|119361460|sp|Q39RG3|RECO_GEOMG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78195394|gb|ABB33161.1| DNA replication and repair protein RecO [Geobacter metallireducens
GS-15]
Length = 244
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ +AI+L Y E + I+ + T QYG+ G + + R P L+ + V R
Sbjct: 5 RTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVELVVR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+++ + ++ + R+LP+ P L+ +L+ +L
Sbjct: 65 -EGLSSLRGADIVTLYPGIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYLERL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ E L +G+ + L C GV
Sbjct: 124 DQGEPLPSDRRFFEANFLNILGYRISLDHCASCGV 158
>gi|254490789|ref|ZP_05103972.1| DNA repair protein RecO [Methylophaga thiooxidans DMS010]
gi|224463961|gb|EEF80227.1| DNA repair protein RecO [Methylophaga thiooxydans DMS010]
Length = 234
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 76/236 (32%), Gaps = 13/236 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M A +L R + E +++++ +TR +GR R + + + +LQ + ++W
Sbjct: 1 MELTS-AFVLHHRPFRETSLLVDALTRDHGRVSLVARGMRQQKKRQSHVLQLFQPLWISW 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ A L L GL L R LP +E +YD L
Sbjct: 60 YGYSELHTLGQAEASE---SAFRLIGKASLCGLYLNELLVRLLPIQESEPVIYDAYYQAL 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGL 177
+ + E LL +G+GL L + +D R +
Sbjct: 117 QSLQQNENEQVVLRLFEKRLLAELGYGLVLRHEAGSLTPIEDNGLYRYLPDSGPQRQLNA 176
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ EE D SLK + + + + + R+ F
Sbjct: 177 GKEPSVSGRSLRQLDEEDGFDETSLKEIK-----IMMRTVINYYLGGKPLHSRQLF 227
>gi|330722062|gb|EGG99980.1| DNA recombination and repair protein RecO [gamma proteobacterium
IMCC2047]
Length = 234
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 10/225 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L R Y E ++I++ + GR VR + + + +LQ + ++W +
Sbjct: 9 QAYVLHTRHYRETSLIVDFLVPDVGRISAVVRGARRPKSPQRSLLQPFGRLLISWYGKGE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L G+ L R + EPC L+ L +
Sbjct: 69 LKTLKVLESDNQLVG---LRGRALFSGMYLNELLVRLIKAEEPCETLFVNYQQALFELRE 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + + E LL+ +G+ + T + + V + +
Sbjct: 126 AESVEPVLRRFERQLLQTLGYWMGFPD-SDTEQVNCFYFDTDSQWLPVAETPTQAQQARC 184
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
+ + A+ A + L + AL + L
Sbjct: 185 FLTADLAAIAQDDYSAEQTLRAAKR----LMRLALAPLLGDKPLS 225
>gi|154686788|ref|YP_001421949.1| DNA repair protein RecO [Bacillus amyloliquefaciens FZB42]
gi|166221883|sp|A7Z6U2|RECO_BACA2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|154352639|gb|ABS74718.1| RecO [Bacillus amyloliquefaciens FZB42]
Length = 255
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 1/188 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E++ S L Y + E++P L++++
Sbjct: 61 QRTSGLGTLQQGEMILSMRTIREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ I +++ +L +G +L CV + S + G +C
Sbjct: 121 RLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEGTFHFSIRDNGFICHRCFEKD 180
Query: 180 AEKMLVLP 187
++ + P
Sbjct: 181 PYRVPMSP 188
>gi|89094544|ref|ZP_01167482.1| DNA repair protein RecO [Oceanospirillum sp. MED92]
gi|89081143|gb|EAR60377.1| DNA repair protein RecO [Oceanospirillum sp. MED92]
Length = 229
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 76/237 (32%), Gaps = 16/237 (6%)
Query: 1 MYWQDD--AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRV 56
M D +L R Y + +++++ T ++G+ V+ + +++ +Q V++
Sbjct: 1 MAVTDQQAGYVLHGRPYRDTSLLVDFFTLEHGKVSAVVQGARRPNSKLRASVQPFVPVQL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+WR R + L L GL L R L +P +LY
Sbjct: 61 SWRGRNDLKTVTQAEP---AAAMLFLKGDALLCGLYLNELLERLLLPFDPHPKLYVYYQY 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
LN + E LL +G +LT + + G ++ +
Sbjct: 118 ALNELVAGDDVEGALRTFEHRLLDELGHLPELTG----KDQNRIYRIDMDEGFSIIEQIN 173
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ +K A + L + + H + H RE F
Sbjct: 174 EADKRRYFYGWQLSAIAADDYTDVQVKRAAKR----LMRLLIDHILGHKPLRSRELF 226
>gi|167570685|ref|ZP_02363559.1| DNA repair protein RecO [Burkholderia oklahomensis C6786]
Length = 248
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 19 PAFVLHSHPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 78
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P L+ + L
Sbjct: 79 LRT---LTGAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPPLFTHYLVTLTRLAH 135
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 136 GEPPVQVLRSFERVLLRETGYAMSLKRTVARRSVEPDRLYVFDPERGVRDADDDIPSHWP 195
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 196 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 245
>gi|167563524|ref|ZP_02356440.1| DNA repair protein RecO [Burkholderia oklahomensis EO147]
Length = 251
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E +++++V+TR +GR + + + +LQ + ++W +
Sbjct: 22 PAFVLHSHPYRETSLVIDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 81
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P L+ + L
Sbjct: 82 LRT---LTGAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPPLFTHYLVTLTRLAH 138
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 139 GEPPVQVLRSFERVLLRETGYAMSLKRTVARRSVEPDRLYVFDPERGVRDADDDIPSHWP 198
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L EE + + L ++ L + L R+ +
Sbjct: 199 VIAGQTLLDMEEDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 248
>gi|284044557|ref|YP_003394897.1| DNA repair protein RecO [Conexibacter woesei DSM 14684]
gi|283948778|gb|ADB51522.1| DNA repair protein RecO [Conexibacter woesei DSM 14684]
Length = 248
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 4/193 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ +AI+L +GE + IL + T +GR + + R + L+ +RVN
Sbjct: 7 RTEAIVLRSIRFGEADRILHLYTPDHGRVGAIAKGARKTRSRFGARLEPFFHLRVNLHLS 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ H + ++ + R +P ++ +L L
Sbjct: 67 RGDLHTVTSADTIDPHGPLRERACSLDAASRACDAVTRLFETDDPSPAVFHLLANELRLL 126
Query: 122 KIPSVI--GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L LL GF L C G + L S +GG VC +
Sbjct: 127 DGDERHSGQAAQLAFRLKLLVAGGFTPQLASCASCGESDHLSGFSGSAGGVVCSACEASA 186
Query: 180 AEKMLVLPSFLWK 192
+FL +
Sbjct: 187 FPLSEEAYTFLVE 199
>gi|78065720|ref|YP_368489.1| DNA repair protein RecO [Burkholderia sp. 383]
gi|119361450|sp|Q39I71|RECO_BURS3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|77966465|gb|ABB07845.1| DNA replication and repair protein RecO [Burkholderia sp. 383]
Length = 278
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 49 PAYVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F +P L++ + L
Sbjct: 109 VRT---LTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 166 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDEVPSHWP 225
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 226 VISGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 275
>gi|171322521|ref|ZP_02911314.1| DNA repair protein RecO [Burkholderia ambifaria MEX-5]
gi|171092148|gb|EDT37556.1| DNA repair protein RecO [Burkholderia ambifaria MEX-5]
Length = 279
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 50 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 109
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F +P L++ + L
Sbjct: 110 VRT---LTGAEWVGGMLPLGGDGLLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 166
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 167 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDDVPSHWP 226
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 227 VITGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 276
>gi|134295166|ref|YP_001118901.1| DNA repair protein RecO [Burkholderia vietnamiensis G4]
gi|134138323|gb|ABO54066.1| DNA replication and repair protein RecO [Burkholderia vietnamiensis
G4]
Length = 279
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 50 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 109
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F +P L++ + L
Sbjct: 110 VRT---LTGAEWVGGMLPLGGDGLLCGFYVNELLVKFCAREDPQPPLFNHYVLTLTRLAH 166
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 167 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPERRYVFDPERGVRNADDDVPSHWP 226
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 227 VVTGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 276
>gi|300114890|ref|YP_003761465.1| DNA repair protein RecO [Nitrosococcus watsonii C-113]
gi|299540827|gb|ADJ29144.1| DNA repair protein RecO [Nitrosococcus watsonii C-113]
Length = 258
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 13/235 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWRSRLA 63
A IL R Y E ++++E T +YGR + + R + LQ + ++W R
Sbjct: 7 PAYILHSRPYRETSVLVEAFTPEYGRVGLVAKGVKRRRSHGVSPLQPFCPLLLSWTGRGD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ A L+ + L R LP R+P +L+ L +
Sbjct: 67 LVT---LTGAEATGPAFTLTGEGLICAFYLNELLLRLLPRRDPLEDLFSAYAHSLPSLRH 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGA-VCRSVGLPYAE 181
+ E LL +G+GL L V + + W S + V
Sbjct: 124 ARQRQQTLRLFERDLLACLGYGLILDHEVNSSRPIEAEQWYSYQLEKGPVRLPSNGLEGM 183
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
K+ + D SL A + L ++ L ++ R
Sbjct: 184 KISGHTLQALAQGALADPVSLGEAKR-----LLRWLLAVHLGDKPLKSRGLLEEL 233
>gi|253999487|ref|YP_003051550.1| DNA repair protein RecO [Methylovorus sp. SIP3-4]
gi|253986166|gb|ACT51023.1| DNA repair protein RecO [Methylovorus sp. SIP3-4]
Length = 241
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 14/234 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++++E+ +R +GR + + R + +LQ+ + W +
Sbjct: 13 YVLHTYPFKETSLVVELFSRDFGRVAAVAKGARRPRSAMRGMLQSFQPLLATWSGKAELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ LL + G L R LP + L+ L +
Sbjct: 73 TLH---SLEWGSGLLLLQGDALMCGFYMNELLLRLLPREDSHDALFAYYGDTLRTLSQSA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV-GLPYAEKML 184
+ EL +L+ +G+ + L + + C LP A ++
Sbjct: 130 EHATSLRRFELRMLQEMGYAVPLLNDERDQPVEAERIYEYVAERGACTGATALPAANRVQ 189
Query: 185 VLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ L + D+ + + + Q L + L H + R+ +
Sbjct: 190 LRGKTLLDMARDDYADSQTQQQSKQ-----LMRMLLAHYLGDKPLHTRQLLIDL 238
>gi|117924217|ref|YP_864834.1| DNA replication and repair protein RecO [Magnetococcus sp. MC-1]
gi|117607973|gb|ABK43428.1| DNA replication and repair protein RecO [Magnetococcus sp. MC-1]
Length = 242
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 12/233 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRVNWRSR- 61
AIIL + + ++++ + T+ +G R + + L + + V R
Sbjct: 8 PAIILRRIPFRDSSLVVSLFTQDHGVRAVMARGARKGSKTLPRGDLAGYHTLGVQLGGRE 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L E+L+ L + ++R LP + +L+ L L+
Sbjct: 68 GQNMLTLRSAEILQPRHGLLHQRVGSSAAQLMLEQVYRLLPVEDANPKLFGALQEALDRL 127
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ ++ + LL N+GFG + C G DL + S K VC G P+
Sbjct: 128 EAGEAALEVVGLWQGFLLHNLGFGWQVAHCAGCGGETDLRFFSTKRNQTVCAPCGTPHRH 187
Query: 182 KMLVLPSFLW-----KEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLR 229
++L LP + + D L LT L ++ + R
Sbjct: 188 RLLPLPEGVLAVMRGQPGGAADQAELVM---LTTALLAQHGEKVLHAQQPFFR 237
>gi|288555747|ref|YP_003427682.1| DNA repair protein RecO [Bacillus pseudofirmus OF4]
gi|288546907|gb|ADC50790.1| DNA repair protein RecO [Bacillus pseudofirmus OF4]
Length = 251
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 2/188 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + +AI++ YGE N I+ + TR+ G+ R + + + + + +
Sbjct: 1 MQ-KVEAIVIRTNDYGESNKIVTLFTRESGKVGVMARGAKKPKSRLAAISQLFIHGLYLF 59
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + E++ S+ L Y + + + E++P L+ +L L
Sbjct: 60 QKSNGLGTLNQAEMIHSYKEVRNDLFLASYATYVVELIDKLTEEKQPNEPLFHLLQQTLL 119
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E+ +++ G +L +C G T+ S K G +C+
Sbjct: 120 YLDEGIDPEVLLRIFEMKMMQVAGITPELDQCTNCGSTEVPSGFSIKEAGFLCKKCIHKD 179
Query: 180 AEKMLVLP 187
+ P
Sbjct: 180 EHAFKITP 187
>gi|161525338|ref|YP_001580350.1| DNA repair protein RecO [Burkholderia multivorans ATCC 17616]
gi|189349925|ref|YP_001945553.1| DNA repair protein RecO [Burkholderia multivorans ATCC 17616]
gi|221201353|ref|ZP_03574392.1| DNA repair protein RecO [Burkholderia multivorans CGD2M]
gi|221208833|ref|ZP_03581831.1| DNA repair protein RecO [Burkholderia multivorans CGD2]
gi|160342767|gb|ABX15853.1| DNA repair protein RecO [Burkholderia multivorans ATCC 17616]
gi|189333947|dbj|BAG43017.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
gi|221171289|gb|EEE03738.1| DNA repair protein RecO [Burkholderia multivorans CGD2]
gi|221178621|gb|EEE11029.1| DNA repair protein RecO [Burkholderia multivorans CGD2M]
Length = 278
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 49 PAFVLHSYPYRETSLIVDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L++ + L
Sbjct: 109 VRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ + L + V + V + +
Sbjct: 166 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDQRYVFDPERGVRPAGDDVPSHWP 225
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +++ ++ + L + LN Y R+ +
Sbjct: 226 VVSGQTLLDMEQDDYHRPQTVTQSKTLMRFLLNTYL----GGTPLATRQILIDL 275
>gi|221214086|ref|ZP_03587059.1| DNA repair protein RecO [Burkholderia multivorans CGD1]
gi|221166263|gb|EED98736.1| DNA repair protein RecO [Burkholderia multivorans CGD1]
Length = 275
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 46 PAFVLHSYPYRETSLIVDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 105
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L++ + L
Sbjct: 106 VRT---LTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAH 162
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ + L + V + V + +
Sbjct: 163 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDQRYVFDPERGVRPADDDVPSHWP 222
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +++ ++ + L + LN Y R+ +
Sbjct: 223 IVSGQTLLDMEQDDYHRPQTVTQSKTLMRFLLNTYL----GGTPLATRQILIDL 272
>gi|170699585|ref|ZP_02890625.1| DNA repair protein RecO [Burkholderia ambifaria IOP40-10]
gi|170135536|gb|EDT03824.1| DNA repair protein RecO [Burkholderia ambifaria IOP40-10]
Length = 279
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 50 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 109
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F +P L++ + L
Sbjct: 110 VRT---LTGAEWVGGMLPLGGDGLLCGFYVNELLVKFCAREDPQPPLFNHYVLTLTRLAH 166
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 167 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDDVPSHWP 226
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 227 VITGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 276
>gi|115351066|ref|YP_772905.1| DNA repair protein RecO [Burkholderia ambifaria AMMD]
gi|172060071|ref|YP_001807723.1| DNA repair protein RecO [Burkholderia ambifaria MC40-6]
gi|115281054|gb|ABI86571.1| DNA replication and repair protein RecO [Burkholderia ambifaria
AMMD]
gi|171992588|gb|ACB63507.1| DNA repair protein RecO [Burkholderia ambifaria MC40-6]
Length = 279
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 50 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 109
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F +P L++ + L
Sbjct: 110 VRT---LTGAEWVGGMLPLGGDGLLCGFYVNELLVKFCAREDPQPPLFNHYVLTLTRLAH 166
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 167 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDDVPSHWP 226
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 227 VITGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 276
>gi|170695424|ref|ZP_02886569.1| DNA repair protein RecO [Burkholderia graminis C4D1M]
gi|170139615|gb|EDT07798.1| DNA repair protein RecO [Burkholderia graminis C4D1M]
Length = 307
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 78 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 137
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 138 VRT---LTGAEWVGGMLPLTGDALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 194
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + A+
Sbjct: 195 DEPPVQVLRSFERVLLRETGYAMSLDRTVTRKAVDAGKRYVFDPERGVREASDDLPAQWP 254
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 255 VVAGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 304
>gi|307730525|ref|YP_003907749.1| DNA repair protein RecO [Burkholderia sp. CCGE1003]
gi|307585060|gb|ADN58458.1| DNA repair protein RecO [Burkholderia sp. CCGE1003]
Length = 306
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 77 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 136
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 137 VRT---LTGAEWVGGMLPLTGDALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 193
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ + L + V + V + A+
Sbjct: 194 DEPPVQVLRSFERVLLRETGYAMSLDRTVTRKAVEAGSRYVFDPERGVREASDDLPAQWP 253
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +++ A ++ + L + LN Y R+ +
Sbjct: 254 VVAGQTLLDMEKDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 303
>gi|330860317|emb|CBX70631.1| DNA repair protein recO [Yersinia enterocolitica W22703]
Length = 231
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 8/218 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R Y E +++L++ T GR + + R + LQ + V
Sbjct: 1 MEGWQ-RAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R A L+ S+ GL L R L + L+
Sbjct: 60 CTGRGEVKTLRSAEP---VSLALPLAGSMLYSGLYVNELLSRVLEHQTNYSALFFDYLHC 116
Query: 118 LNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L Q EL +L ++G+G+D C +G +
Sbjct: 117 LQSLAGSDGSPEYALRQFELAILAHLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASL 176
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
+ + DAD+L++A + T L
Sbjct: 177 VVDHYSFTGRQLLALANREFPDADTLRAAKRFTRIALK 214
>gi|323526857|ref|YP_004229010.1| DNA repair protein RecO [Burkholderia sp. CCGE1001]
gi|323383859|gb|ADX55950.1| DNA repair protein RecO [Burkholderia sp. CCGE1001]
Length = 306
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 77 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 136
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 137 VRT---LTGAEWVGGMLPLTGDALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 193
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ + L + V + V + G A+
Sbjct: 194 DEPPVQVLRSFERVLLRETGYAMSLDRTVARRAVEAGGRYVFDPERGVREASGDLPAQWP 253
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +++ A ++ + L + LN Y R+ +
Sbjct: 254 VVAGQTLLDMEKDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 303
>gi|113868515|ref|YP_727004.1| DNA repair protein RecO [Ralstonia eutropha H16]
gi|113527291|emb|CAJ93636.1| combinational DNA repair protein (RecF pathway) [Ralstonia eutropha
H16]
Length = 297
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 5/148 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++IL++ TR YGR + + + +LQ + V V+W R
Sbjct: 67 PGFVLHAWPYRETSLILDLFTRDYGRISMVAKGAKRPHSALRAVLQHFHPVSVSWSGRGE 126
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L L RF P + L+ L
Sbjct: 127 VKTLTKAE-WVGGMPPLAGD--ALLSAFYLNELLMRFCPREDAHPALFRHYLTTLTRLAH 183
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
G + E +LL+ GF + +C
Sbjct: 184 GEQAGLVLRSFERVLLQETGFAVAFDQC 211
>gi|229916326|ref|YP_002884972.1| DNA repair protein RecO [Exiguobacterium sp. AT1b]
gi|259563678|sp|C4L405|RECO_EXISA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229467755|gb|ACQ69527.1| DNA repair protein RecO [Exiguobacterium sp. AT1b]
Length = 249
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 1/173 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + I++ +YGE N ++ + T + G+ R + + + V +
Sbjct: 1 MLQKVTGIVVRTVNYGESNKVVTLFTEELGKVAIMARGAKKPGSRFHASSQPFVEGVYIF 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ L + + + + ++ + Y + + + R + +R L+ +L L
Sbjct: 61 PSSRGLAQLKSSDVMTSYPEIRKDVERMAYAMYWLELVDRSVEDRVQNRPLFRILQDALQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
I +EL +L +G LT CV G D ++ S SGG +C
Sbjct: 121 ALNAGMDADVITHYVELRILHLLGVAPVLTGCVRCGDVTDPMYFSVASGGFLC 173
>gi|292492474|ref|YP_003527913.1| DNA repair protein RecO [Nitrosococcus halophilus Nc4]
gi|291581069|gb|ADE15526.1| DNA repair protein RecO [Nitrosococcus halophilus Nc4]
Length = 249
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 13/235 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
A +L +R Y E + ++E+ T+ YGR + + R + +LQ + ++W R
Sbjct: 7 PAYVLHLRPYRETSALVEIFTQDYGRVGLVAKGVRQRRSKAIGLLQPFCPLLLSWVGRSD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L+ + L R LP R+P L+ + L
Sbjct: 67 LVT---LTGAEAAGRGPALTGEGLVCAFYLNELLLRLLPRRDPFEALFSVYAHSLPPLAN 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAE- 181
+ E LL +G+GL LT T W S + R
Sbjct: 124 SQQRQQALRLFERDLLTYLGYGLTLTHEADTHRPIDAEQWYSYQLEKGPQRFQSEDLGGM 183
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
K+ + D SL A Q L ++ L + R
Sbjct: 184 KVRGRTLQALARGELADPVSLHEAKQ-----LLRWLLAFQLGDKPLKSRALLEEL 233
>gi|167586635|ref|ZP_02379023.1| DNA repair protein RecO [Burkholderia ubonensis Bu]
Length = 255
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 26 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 85
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G + L +F +P L++ + L
Sbjct: 86 ---MRTLTGAEWVGGMLPLAGDALLCGFYANELLVKFCAREDPQPPLFNHYVVTLTRLAH 142
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V + V + +
Sbjct: 143 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEADRLYVFDPERGVRGADDDVPSHWP 202
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 203 VVSGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 252
>gi|313201512|ref|YP_004040170.1| DNA repair protein reco [Methylovorus sp. MP688]
gi|312440828|gb|ADQ84934.1| DNA repair protein RecO [Methylovorus sp. MP688]
Length = 230
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 14/234 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++++E+ +R +GR + + R + +LQ+ + W +
Sbjct: 2 YVLHTYPFKETSLVVELFSRDFGRVAAVAKGARRPRSAMRGMLQSFQPLLATWSGKAELK 61
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ LL + G L R LP + L+ L +
Sbjct: 62 TLH---SLEWGSGLLLLQGDALMCGFYMNELLLRLLPREDSHDALFAYYGDTLRTLSQSA 118
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG-LPYAEKML 184
+ EL +L+ +G+ + L + + C LP A ++
Sbjct: 119 EHATSLRRFELRMLQEMGYAVPLLNDERDQPIEAERVYEYVAERGACTGATPLPAANRVQ 178
Query: 185 VLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ L + D+ + + + Q L + L H + R+ +
Sbjct: 179 LRGKTLLDMARDDYADSQTQQQSKQ-----LMRMLLAHYLGDKPLHTRQLLIDL 227
>gi|119774019|ref|YP_926759.1| DNA repair protein RecO [Shewanella amazonensis SB2B]
gi|119766519|gb|ABL99089.1| DNA repair protein RecO [Shewanella amazonensis SB2B]
Length = 224
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 15/233 (6%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +L R Y E + I+ ++ GR R + +LQ + + +
Sbjct: 2 ERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKGE 61
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
A L + L R L L+ + L
Sbjct: 62 LRTLIQPEAYA---PAIPLQGDALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAK 118
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
++ EL LL+ +G L+ + P G + EK
Sbjct: 119 GFCQSQLR-YFELSLLEELGACPSLSDDTLGTAISAECAYRPCPEGGL----APSTLEKA 173
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ + L E+ + +A Q L ++ L + + L R+ F +
Sbjct: 174 ISGRAILALAEKNLSEADFAAARQ-----LLRFLLAPFVGNKPLVSRQLFANR 221
>gi|73541937|ref|YP_296457.1| DNA repair protein RecO [Ralstonia eutropha JMP134]
gi|119361473|sp|Q46Z20|RECO_RALEJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|72119350|gb|AAZ61613.1| DNA replication and repair protein RecO [Ralstonia eutropha JMP134]
Length = 291
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 5/148 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++IL+V TR +GR + + +P+LQ + + ++W R
Sbjct: 61 PGFVLHAWPYRETSLILDVFTRDHGRLSMVAKGAKRPHSALRPVLQHFHPISLSWSGRGE 120
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L L RF P + L+ L
Sbjct: 121 VKTLTRAE-WVGGMPPLAGD--ALLSAFYLNELLMRFCPREDGHPALFRHYMATLTRLAH 177
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
G + E +LL+ GF + +C
Sbjct: 178 GEAAGLVLRSFERVLLQETGFAVAFDQC 205
>gi|332975859|gb|EGK12737.1| recombination protein O [Desmospora sp. 8437]
Length = 250
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 21/252 (8%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + +++ R YGE + ++ + T+ +G++ R + + + +
Sbjct: 1 MLEKLEGVVIRTRDYGESHKVVILFTKAHGKYAVMARGAKKPKSRLAAVTQPFTSGEYLC 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + ++LES Y L + E+EP L +Y L LN
Sbjct: 61 FTGSGMATLSQGDILESRHLLRSDLVRASYAAYWTELLDKLKEEKEPDLPVYIWLETVLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + EL +L++ G+ L CV G + S + GG +C
Sbjct: 121 LLEEGVDPEILSRIFELKVLESAGYRPRLQGCVQCGGADTPVKFSIRQGGFLCSGC---- 176
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAF---QL--------TDYFLNKYA--LQHNIIHCH 226
P L+ + + +L T L + I
Sbjct: 177 ---SHRDPEALFLSPAAARILGILAGISPQRLGQIRVKEETRRQLERILRSFIDEYIDLP 233
Query: 227 LLRENFLGKLLE 238
L +FL ++ +
Sbjct: 234 LRSRDFLDRMKK 245
>gi|297516304|ref|ZP_06934690.1| DNA repair protein RecO [Escherichia coli OP50]
Length = 161
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 8/163 (4%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN 57
M WQ A +L R + E +++L+V T + GR + +S R + LQ + +
Sbjct: 1 MEGWQ-RAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLR 59
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R A LS GL L R L EL+
Sbjct: 60 FGGRGEVKTLR---SAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHC 116
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ + + EL LL ++G+G++ T C +G D
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVD 159
>gi|116872891|ref|YP_849672.1| DNA repair protein RecO [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123461072|sp|A0AIR1|RECO_LISW6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116741769|emb|CAK20893.1| recombination protein O [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 255
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/250 (16%), Positives = 81/250 (32%), Gaps = 20/250 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTRSNGIICHRCFEKDRYRMH 184
Query: 185 VLPS-------FLWKEEQTIDADSLKSAFQLTDYFLNKYA---LQHNIIHCHLLRENF-- 232
+ + F + + +K T +L K N R+
Sbjct: 185 LPENVVKLLRLFFIFQLDRLGNIDVKQE---TKDWLQKAIDTYYDENSGLYLKSRKFLRD 241
Query: 233 ----LGKLLE 238
L +
Sbjct: 242 MDKWENMLKK 251
>gi|89100472|ref|ZP_01173334.1| DNA repair protein RecO [Bacillus sp. NRRL B-14911]
gi|89084815|gb|EAR63954.1| DNA repair protein RecO [Bacillus sp. NRRL B-14911]
Length = 253
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 1/191 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M+ + + I+L +YGE N I+ + TR++G+ R + + +
Sbjct: 1 MFEKCEGIVLRTVNYGESNKIVTLYTREWGKVGVMARGAKKPNSRLSAVTQPFTYGYFLV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E++ S + L Y + + + E++P +++L+ LN
Sbjct: 61 QRSSGLGLMQQGEMVSSMRSIREDIFLTAYASYIVDLTDKTVEEKKPNPFHFELLHQTLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E+ +L ++G L KC V G T S + GG +C
Sbjct: 121 YMNEGYDPEIMVNIYEMKMLNSLGLYPVLDKCSVCGSTDGHFSFSIREGGLICHRCLEKD 180
Query: 180 AEKMLVLPSFL 190
+ P+ L
Sbjct: 181 PYHYKISPAAL 191
>gi|330815988|ref|YP_004359693.1| DNA repair protein RecO [Burkholderia gladioli BSR3]
gi|327368381|gb|AEA59737.1| DNA repair protein RecO [Burkholderia gladioli BSR3]
Length = 295
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 66 PGFVLHSYPYRETSLIIDVLTRDHGRVALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSE 125
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F +P L+ + L
Sbjct: 126 ---MRTLTGAEWVGGMLPLGGDALLCGFYVNELLVKFCAREDPFPPLFQHYLVTLARLAH 182
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ L + Q V + A
Sbjct: 183 DEPAVQVLRSFERVLLRETGYARALNRTTARRSVQPEGRYVFDPERGVREASDELPAHWP 242
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +E+ A ++ + L + LN Y R+ +
Sbjct: 243 VVAGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 292
>gi|313633230|gb|EFS00100.1| DNA repair protein RecO [Listeria seeligeri FSL N1-067]
Length = 255
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTSGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFPSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIFEMKMLPVLGHYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|308174316|ref|YP_003921021.1| DNA double strand break repair and homologous recombination factor
[Bacillus amyloliquefaciens DSM 7]
gi|307607180|emb|CBI43551.1| DNA double strand break repair and homologous recombination factor
[Bacillus amyloliquefaciens DSM 7]
Length = 255
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGEMNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E++ S L Y + E++P L++++
Sbjct: 61 QRTSGLGTLQQGEMILSMRTIREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I +++ +L +G +L CV S + G +C
Sbjct: 121 RLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDGTFHFSVRDNGFICHRCFGK 179
>gi|209517220|ref|ZP_03266065.1| DNA repair protein RecO [Burkholderia sp. H160]
gi|209502356|gb|EEA02367.1| DNA repair protein RecO [Burkholderia sp. H160]
Length = 301
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 15/236 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + + W +
Sbjct: 72 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLSLAWSGKSE 131
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L RF +P +L+ + L
Sbjct: 132 ---MRTLTGAEWVGGMLPLTGDALLCGFYVNELLVRFCAREDPHPQLFHHYVVTLTRLAH 188
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK- 182
++ E +LL+ G+ + L + V V R + +
Sbjct: 189 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLADGRYVFDPERGV-REASDEWPAQW 247
Query: 183 --MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ +++ A ++ + L ++ L + L R+ +
Sbjct: 248 PVVSGQTLLDMEKDDYHRAQTVAQSKT-----LMRFLLNTYLGGAPLATRQILIDL 298
>gi|289434742|ref|YP_003464614.1| recombination protein O [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170986|emb|CBH27528.1| recombination protein O [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 255
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTSGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIFEMKMLPVLGHYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|77164312|ref|YP_342837.1| recombination protein O, RecO [Nitrosococcus oceani ATCC 19707]
gi|254434720|ref|ZP_05048228.1| DNA repair protein RecO [Nitrosococcus oceani AFC27]
gi|92087029|sp|Q3JCY9|RECO_NITOC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|76882626|gb|ABA57307.1| DNA replication and repair protein RecO [Nitrosococcus oceani ATCC
19707]
gi|207091053|gb|EDZ68324.1| DNA repair protein RecO [Nitrosococcus oceani AFC27]
Length = 246
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 13/235 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
A +L R Y E + ++EV T +YGR + + R +LQ + ++W R
Sbjct: 7 PAYVLHSRPYRETSALVEVFTPEYGRVGLVAKGVKRQRTHRFSLLQPFCPLLLSWTGRGD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ +L+ + L R LP R+P L+ + L
Sbjct: 67 LVT---LTGAEAAGPIPVLTGEGLICAFYLNELLLRLLPRRDPLEALFSVYAHSLPSLIH 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAE- 181
+I E LL +G+GL L T + W S + R +
Sbjct: 124 AQQRQQILRLFERDLLAYLGYGLILKYEAGTSRPIEAGQWYSYQLEKGPVRLLSEDLEGM 183
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
K+ D SL A + L ++ L ++ R
Sbjct: 184 KVRGHTLQALARGALADPASLGEAKR-----LLRWLLAFHLGDKPLKSRGLLEEL 233
>gi|313637816|gb|EFS03157.1| DNA repair protein RecO [Listeria seeligeri FSL S4-171]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTSGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIFEMKMLPVLGHYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|145588595|ref|YP_001155192.1| DNA repair protein RecO [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|254764653|sp|A4SVW4|RECO_POLSQ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145047001|gb|ABP33628.1| DNA replication and repair protein RecO [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 244
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 12/219 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ A +L Y E ++IL+V TRQ+GR + + +P+LQ + V+W +
Sbjct: 8 DEPAFVLHSIPYKETSLILDVFTRQHGRMALIAKGAKRPHSVLRPVLQRFQPLLVSWSGK 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E + + + L G L +FL + LYD + +N
Sbjct: 68 SELRT-LTKSEWVGGMPSLVGD--ALLCGFYLNELLVKFLAREDDYERLYDRYSETINAL 124
Query: 122 KIPSVI----GKIFVQIELMLLKNIGFGLDLTKCVVTGV---TQDLLWVSPKSGGAVCRS 174
+I EL LL+ G+ L +CV T + L P+ G +
Sbjct: 125 SNLEFESKGLEEILRPFELSLLQETGYAAALDRCVETNDSPVFEALYVYQPERGVRPIQV 184
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFL 213
+ + D ++L + QL + L
Sbjct: 185 DDPGHWPVLRGKSLLAIAAGDFSDPETLSESKQLMRFLL 223
>gi|254252843|ref|ZP_04946161.1| Recombinational DNA repair protein (RecF pathway) [Burkholderia
dolosa AUO158]
gi|124895452|gb|EAY69332.1| Recombinational DNA repair protein (RecF pathway) [Burkholderia
dolosa AUO158]
Length = 278
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 49 PAFVLHSYPYRETSLIIDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G + L +F + L++ + L
Sbjct: 109 VRT---LTGAEWVGGMLPLGGDALLCGFYANELLVKFCAREDSQPPLFNHYVLTLTRLAH 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ + L + V + V + +
Sbjct: 166 GEPAVQVLRSFERVLLRETGYAMALNRTVARRAVEPDRRYVFDPERGVRNADDDVPSHWP 225
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ +++ A ++ + L + LN Y
Sbjct: 226 VVSGQTLLDMEQDDYHRAQTVAQSKTLMRFLLNTYL 261
>gi|330502447|ref|YP_004379316.1| DNA repair protein RecO [Pseudomonas mendocina NK-01]
gi|328916733|gb|AEB57564.1| DNA repair protein RecO [Pseudomonas mendocina NK-01]
Length = 229
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 13/233 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A +L R Y E + +++ T GR +R + ++ I + + + R R
Sbjct: 5 AYVLHSRPYKESSALVDFFTA-QGRIRAVLRAARG-KVGSIARPFAPLELELRGRGELKT 62
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + LL+ GL L R LP +P + + + L
Sbjct: 63 ---VGRLESAGIPLLLTGEALFSGLYLNELLIRLLPAEDPHPAMLEHYGLTLQALAAGRP 119
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ + E LL +G+G L + + + V L L
Sbjct: 120 LEPLLRAFEWRLLDELGYGFALDRDQHDQAIDPAALYRWQQDIGLVPVVQLQ-PGVFLGR 178
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGKLLE 238
E +L +A + L + AL ++ L RE F+ L E
Sbjct: 179 ELLAMAEADWQTPGALAAAKR-----LMRQALAPHLGGRPLVSRELFM-TLKE 225
>gi|16803500|ref|NP_464985.1| DNA repair protein RecO [Listeria monocytogenes EGD-e]
gi|217964394|ref|YP_002350072.1| DNA repair protein RecO [Listeria monocytogenes HCC23]
gi|224499690|ref|ZP_03668039.1| DNA repair protein RecO [Listeria monocytogenes Finland 1988]
gi|254827748|ref|ZP_05232435.1| DNA repair protein recO [Listeria monocytogenes FSL N3-165]
gi|254829781|ref|ZP_05234436.1| DNA repair protein RecO [Listeria monocytogenes 10403S]
gi|255030078|ref|ZP_05302029.1| DNA repair protein RecO [Listeria monocytogenes LO28]
gi|290894222|ref|ZP_06557191.1| DNA repair protein recO [Listeria monocytogenes FSL J2-071]
gi|20139471|sp|Q8Y752|RECO_LISMO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254764641|sp|B8DE51|RECO_LISMH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|16410889|emb|CAC99538.1| lmo1460 [Listeria monocytogenes EGD-e]
gi|217333664|gb|ACK39458.1| DNA repair protein RecO [Listeria monocytogenes HCC23]
gi|258600127|gb|EEW13452.1| DNA repair protein recO [Listeria monocytogenes FSL N3-165]
gi|290556219|gb|EFD89764.1| DNA repair protein recO [Listeria monocytogenes FSL J2-071]
gi|307571041|emb|CAR84220.1| DNA repair protein O [Listeria monocytogenes L99]
gi|313608757|gb|EFR84575.1| DNA repair protein RecO [Listeria monocytogenes FSL F2-208]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIETFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|295677174|ref|YP_003605698.1| DNA repair protein RecO [Burkholderia sp. CCGE1002]
gi|295437017|gb|ADG16187.1| DNA repair protein RecO [Burkholderia sp. CCGE1002]
Length = 301
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 15/236 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + + W +
Sbjct: 72 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLSLAWSGKSE 131
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L RF +P +L+ + L
Sbjct: 132 ---MRTLTGAEWVGGMLPLTGDALLCGFYVNELLVRFCAREDPHPQLFHHYVVTLTRLAH 188
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK- 182
++ E +LL+ G+ + L + V V R + +
Sbjct: 189 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLADGRYVFDPERGV-REASDEWPAQW 247
Query: 183 --MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ +++ A ++ + L ++ L + L R+ +
Sbjct: 248 PVVAGQTLLDMEKDDYHRAQTVAQSKT-----LMRFLLNTYLGGAPLATRQILIDL 298
>gi|329912352|ref|ZP_08275733.1| DNA recombination and repair protein RecO [Oxalobacteraceae
bacterium IMCC9480]
gi|327545639|gb|EGF30797.1| DNA recombination and repair protein RecO [Oxalobacteraceae
bacterium IMCC9480]
Length = 264
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 12/234 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L + E ++I++V TR++GR + + + +LQ + ++W +
Sbjct: 36 PGFVLHSYPHKETSLIIDVFTREHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWTGKSE 95
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L S L G L + + +P L+D LN
Sbjct: 96 ---IRTLTAAEWVGGLLPLEKSALLCGFYLNELLVKLIARDDPHPGLFDHYVSALNQLAH 152
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCV-VTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + EL L+K G DL+ C V + +
Sbjct: 153 GEAATIVLRKFELSLMKQTGVAADLSLCSGTREPVVPTSSYVVDPERGVRLARPSDIWPR 212
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ + E + FL ++ L H + L R+ +
Sbjct: 213 VSGQTLLDMEREDYAGTTTQSQ-----SKFLMRFLLAHQLGGVPLNTRQILIDL 261
>gi|284801847|ref|YP_003413712.1| DNA repair protein RecO [Listeria monocytogenes 08-5578]
gi|284994989|ref|YP_003416757.1| DNA repair protein RecO [Listeria monocytogenes 08-5923]
gi|284057409|gb|ADB68350.1| DNA repair protein RecO [Listeria monocytogenes 08-5578]
gi|284060456|gb|ADB71395.1| DNA repair protein RecO [Listeria monocytogenes 08-5923]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGSNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|296158232|ref|ZP_06841064.1| DNA repair protein RecO [Burkholderia sp. Ch1-1]
gi|295891568|gb|EFG71354.1| DNA repair protein RecO [Burkholderia sp. Ch1-1]
Length = 306
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 77 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 136
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 137 VRT---LTAAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 193
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + A+
Sbjct: 194 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLAEGRYVFDPERGVREASDDLPAQWP 253
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 254 VIAGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 303
>gi|329894311|ref|ZP_08270181.1| DNA recombination and repair protein RecO [gamma proteobacterium
IMCC3088]
gi|328923107|gb|EGG30430.1| DNA recombination and repair protein RecO [gamma proteobacterium
IMCC3088]
Length = 237
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 7/169 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M Q A +L R + E + I+++ T + GR V+ + R+ LQ + V
Sbjct: 3 MGIQQPAFLLRKRPFQESSEIVDLFTPERGRVSCVVKGAKRKRLGGSLSQRLQLFRPLVV 62
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
++ R E+ E + L F + L R L + E EL+
Sbjct: 63 RFQGRGDLKTLLDAEELHEPYT---LFGEGFYAAHYANELLLRVLQQEESYAELFADYAS 119
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP 165
L + S + E +L+ +G DL+ W
Sbjct: 120 LLEVLEADSSPRAPIRRFEWSILQTLGAEPDLSTDANGEPIDPDKWYHF 168
>gi|47095411|ref|ZP_00233021.1| recombination protein O [Listeria monocytogenes str. 1/2a F6854]
gi|254898374|ref|ZP_05258298.1| DNA repair protein RecO [Listeria monocytogenes J0161]
gi|254912134|ref|ZP_05262146.1| recombination protein O [Listeria monocytogenes J2818]
gi|254936462|ref|ZP_05268159.1| recombination protein O [Listeria monocytogenes F6900]
gi|47016232|gb|EAL07155.1| recombination protein O [Listeria monocytogenes str. 1/2a F6854]
gi|258609055|gb|EEW21663.1| recombination protein O [Listeria monocytogenes F6900]
gi|293590106|gb|EFF98440.1| recombination protein O [Listeria monocytogenes J2818]
Length = 255
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIETFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPMLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|299822894|ref|ZP_07054780.1| recombination protein O [Listeria grayi DSM 20601]
gi|299816423|gb|EFI83661.1| recombination protein O [Listeria grayi DSM 20601]
Length = 255
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 3/175 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
+ I++ Y E + I+ + TR++G+ R + + + + Q + + +
Sbjct: 5 EGIVIRQTDYRESDKIVVLYTREFGKIGVVARGAKKTKSRLAAVTQPFVNGYFTFFA-SS 63
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E++++ + L Y L + E+ LY+++ L
Sbjct: 64 GLGTLQQGELIQNFSSIQQDIFLTAYAAYICELLDKATDEKRANPSLYELVFQILRDIDE 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E+ +L +GF + KC + G T S S G +C
Sbjct: 124 GYDPEILVQLFEMKMLPVMGFYPVMDKCAICGETTGHFDFSTHSDGIICHRCFEK 178
>gi|71907659|ref|YP_285246.1| DNA repair protein RecO [Dechloromonas aromatica RCB]
gi|92087026|sp|Q47EF5|RECO_DECAR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|71847280|gb|AAZ46776.1| DNA replication and repair protein RecO [Dechloromonas aromatica
RCB]
Length = 242
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 13/209 (6%)
Query: 1 MYWQDD-----AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNL 53
M + A +L + E ++I+EV +R +GR R + R + +L A
Sbjct: 1 MNLRSKVDSQPAYVLHSYPFRETSLIVEVFSRDFGRMALLARGARRPRSAIRGLLMAFQP 60
Query: 54 VRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM 113
+ + W + + LL+ G L LP + +L+
Sbjct: 61 LEIAWAGKGEVLTLM---KAEWQGGLPLLAGEALFCGYYLNELLMHLLPREDAHEQLFAS 117
Query: 114 LNIFLNCHKIPS---VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L V E LL+ +G+GL L + + + + +
Sbjct: 118 YAKMLALLAADPSGKVREADLRCFEKALLQELGYGLTLNHDSDANLIEPDTFYTYRIEQG 177
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDA 199
R A +++ + L + +
Sbjct: 178 PVRIDHGEGATQVVRGKTLLDLDAEDFSD 206
>gi|16800565|ref|NP_470833.1| DNA repair protein RecO [Listeria innocua Clip11262]
gi|20139533|sp|Q92BQ0|RECO_LISIN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|16413970|emb|CAC96728.1| lin1497 [Listeria innocua Clip11262]
Length = 255
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|313618902|gb|EFR90766.1| DNA repair protein RecO [Listeria innocua FSL S4-378]
Length = 255
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|119361452|sp|Q13VN0|RECO_BURXL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 299
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 70 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 129
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 130 VRT---LTGAEWVGGMLPLTGGALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 186
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + A+
Sbjct: 187 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLAEGRYVFDPERGVREAADDLPAQWP 246
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 247 VIAGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 296
>gi|91784705|ref|YP_559911.1| DNA repair protein RecO [Burkholderia xenovorans LB400]
gi|91688659|gb|ABE31859.1| DNA replication and repair protein RecO [Burkholderia xenovorans
LB400]
Length = 306
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 77 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 136
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 137 VRT---LTGAEWVGGMLPLTGGALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 193
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + A+
Sbjct: 194 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLAEGRYVFDPERGVREAADDLPAQWP 253
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 254 VIAGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 303
>gi|238026619|ref|YP_002910850.1| DNA repair protein RecO [Burkholderia glumae BGR1]
gi|237875813|gb|ACR28146.1| DNA repair protein RecO [Burkholderia glumae BGR1]
Length = 281
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++I++V+TR +GR + + + +LQ + ++W +
Sbjct: 52 PGFVLHSHPYRETSLIIDVLTRDHGRVALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 111
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L G L +F +P L+ + L
Sbjct: 112 ---MRTLTGAEWVGGMLPLGGDALLCGFYVNELLVKFCAREDPFPALFQHYLVTLARLAH 168
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-- 181
++ E +LL+ G+ L + V V + +
Sbjct: 169 DEPAVQVLRSFERVLLRETGYARALNRTVARRAVTADGRYVFDPERGVREAGDDTPSHWP 228
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
+ +E+ A ++ + L + LN Y R+ +
Sbjct: 229 IVSGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYL----GGTPLATRQILIDL 278
>gi|194290150|ref|YP_002006057.1| DNA repair protein reco [Cupriavidus taiwanensis LMG 19424]
gi|193223985|emb|CAQ69994.1| DNA repair protein [Cupriavidus taiwanensis LMG 19424]
Length = 295
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 5/148 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L Y E ++IL+V TR YGR + + + +LQ + V V+W R
Sbjct: 65 PGFVLHAWPYRETSLILDVFTRDYGRLSMVAKGAKRPHSALRAVLQHFHPVSVSWSGRGE 124
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L L RF P + L+ L
Sbjct: 125 VKTLTKAE-WVGGMPPLAGD--ALLSAFYLNELLMRFCPREDAHPVLFRHYLSTLTRLAH 181
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
G + E +LL+ GF + +C
Sbjct: 182 GEPAGLVLRSFERVLLQETGFAVAFDQC 209
>gi|39995684|ref|NP_951635.1| DNA repair protein RecO [Geobacter sulfurreducens PCA]
gi|61215122|sp|Q74FM9|RECO_GEOSL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|39982447|gb|AAR33908.1| DNA repair protein RecO [Geobacter sulfurreducens PCA]
gi|298504695|gb|ADI83418.1| DNA repair protein RecO [Geobacter sulfurreducens KN400]
Length = 243
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 3/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ +A++L Y E + I+ + T +G+ G R + R L+ + V
Sbjct: 4 IRCEAVVLATMDYRESDRIVTLFTLCHGKVRGLARGARKSMRRFGGALEPFARLSVELVV 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R +++ + + +G ++ + R LP+ L+ +L +L
Sbjct: 64 R-EGLSSLRGVDIVTVYPRIRQDLAAIGHGGYAVELVDRLLPDGASVPRLFRLLVSYLEH 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
E LL +G+ L L C GV
Sbjct: 123 LDQGGASPSDRRFFEANLLNILGYRLSLDACAACGV 158
>gi|46907688|ref|YP_014077.1| DNA repair protein RecO [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093467|ref|ZP_00231230.1| recombination protein O [Listeria monocytogenes str. 4b H7858]
gi|226224061|ref|YP_002758168.1| RecO protein [Listeria monocytogenes Clip81459]
gi|254824481|ref|ZP_05229482.1| recombination protein O [Listeria monocytogenes FSL J1-194]
gi|254852085|ref|ZP_05241433.1| recombination protein O [Listeria monocytogenes FSL R2-503]
gi|254932645|ref|ZP_05266004.1| recombination protein O [Listeria monocytogenes HPB2262]
gi|255521275|ref|ZP_05388512.1| DNA repair protein RecO [Listeria monocytogenes FSL J1-175]
gi|300765603|ref|ZP_07075582.1| recombination protein O [Listeria monocytogenes FSL N1-017]
gi|61215088|sp|Q71ZL0|RECO_LISMF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|259563681|sp|C1KVA7|RECO_LISMC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|46880957|gb|AAT04254.1| recombination protein O [Listeria monocytogenes serotype 4b str.
F2365]
gi|47018143|gb|EAL08913.1| recombination protein O [Listeria monocytogenes str. 4b H7858]
gi|225876523|emb|CAS05232.1| Putative RecO protein [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258605384|gb|EEW17992.1| recombination protein O [Listeria monocytogenes FSL R2-503]
gi|293584204|gb|EFF96236.1| recombination protein O [Listeria monocytogenes HPB2262]
gi|293593719|gb|EFG01480.1| recombination protein O [Listeria monocytogenes FSL J1-194]
gi|300513704|gb|EFK40772.1| recombination protein O [Listeria monocytogenes FSL N1-017]
gi|328465503|gb|EGF36732.1| DNA repair protein RecO [Listeria monocytogenes 1816]
gi|332311901|gb|EGJ24996.1| DNA repair protein RecO [Listeria monocytogenes str. Scott A]
Length = 255
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGSNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDINEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S S G +C +M
Sbjct: 125 YDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|224825226|ref|ZP_03698332.1| DNA repair protein RecO [Lutiella nitroferrum 2002]
gi|224602897|gb|EEG09074.1| DNA repair protein RecO [Lutiella nitroferrum 2002]
Length = 242
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 8/215 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ A +L + Y E +++L+V+TR++GR R + R + +L + + W +
Sbjct: 8 RQPAYVLHAQPYRETSLLLDVLTREHGRIALVARGARRPRSDLRGVLLPFQPLLLAWFGK 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
LS + G L + +P E + + +
Sbjct: 68 SEVRTLH---TADWQGGVPQLSGLPLVCGFYLNELLIKLTARDDPHPETFGVYAEAVRGL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
++ + + EL L++ +G+ + + A+ R G P
Sbjct: 125 ASGGLLSSVLRRFELGLVRTLGYAPAFDVDSNGREVEPDVPYLCGPEQALQRWQGGPVPA 184
Query: 182 KMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFL 213
+ V+ + D L + A +L FL
Sbjct: 185 QQQVIEGRILLAMAGGDFSELATRREARRLMRLFL 219
>gi|94311352|ref|YP_584562.1| DNA repair protein RecO [Cupriavidus metallidurans CH34]
gi|119361474|sp|Q1LKN3|RECO_RALME RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|93355204|gb|ABF09293.1| DNA repair protein recO (Recombination protein O) [Cupriavidus
metallidurans CH34]
Length = 298
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 10/233 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
+L Y E +++L+V TR +GR + + + +LQ + + ++W R
Sbjct: 69 GFVLHAHPYRETSLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIALSWTGRGEV 128
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LS L G L RF P + L+ L
Sbjct: 129 KTLTKAEY---VGGMLPLSGDALLSGFYLNELLLRFCPREDAHPTLFRHYMATLTRLSHG 185
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E +LL+ GF + +C+ +G V L +V G P +
Sbjct: 186 EPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASDPSSWP 245
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
++ + L + S + FL Y LQ R+ +
Sbjct: 246 VVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQ---GAPLKTRQILIDL 295
>gi|15613932|ref|NP_242235.1| DNA repair protein RecO [Bacillus halodurans C-125]
gi|20139774|sp|Q9KD50|RECO_BACHD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|10173985|dbj|BAB05088.1| BH1369 [Bacillus halodurans C-125]
Length = 254
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 3/186 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M+ + + I++ YGE N I+ V TR+YG+ R + + + + Q + +
Sbjct: 1 MFHKAEGIVIRTVDYGESNKIVTVFTREYGKIALMARGAKRPKSRLTAVTQLFTYGMMMF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + A + E+++S Y + + + L+++L +
Sbjct: 61 Q-KNAGLGTLTQGEIIQSFREVRNDLFRASYVSYVTDLTNKLTEDEKRNPYLFELLYQTI 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + E+ + G +L +CV T + S K G +C+
Sbjct: 120 HYMNEGMDPDVLTRIFEVKMFTVAGIKPELDQCVSCRSTDVPVGFSIKEAGFLCKRCIEK 179
Query: 179 YAEKML 184
Sbjct: 180 DPHAYK 185
>gi|304310581|ref|YP_003810179.1| Recombinational DNA repair protein (RecF pathway) [gamma
proteobacterium HdN1]
gi|301796314|emb|CBL44522.1| Recombinational DNA repair protein (RecF pathway) [gamma
proteobacterium HdN1]
Length = 241
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 72/235 (30%), Gaps = 12/235 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLAQ 64
A +L + + E + + EV R+ GR R + H +LQ V V++ R
Sbjct: 10 AYVLQAKPWQETSALAEVFCRESGRVSIAFRGVRRGGHSKSSLLQPFQPVWVSYGGRHEL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
G + LS + + G L R L + L+D L
Sbjct: 70 RSGRQLESRA---ASVWLSGNALISGFYLNELLVRLLQREDAHPRLFDAYEESLALL-YA 125
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I E LL IG+ + + + G V RS P AE
Sbjct: 126 GAIEPCLRIFERKLLAEIGYEIRFDHDANGEALVEGGWYCYRHEEGFVRRSGNEPRAEPC 185
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGKLL 237
+ + D + T L + AL ++ L R F L
Sbjct: 186 FSGGLLMAVGREEYDLLDVLR----TAKQLFRTALAPHLGSKPLVSRSLFRPSLK 236
>gi|156975790|ref|YP_001446697.1| recombinational DNA repair protein [Vibrio harveyi ATCC BAA-1116]
gi|156527384|gb|ABU72470.1| hypothetical protein VIBHAR_03534 [Vibrio harveyi ATCC BAA-1116]
Length = 219
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 11/217 (5%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESH 77
+IL+V + +YGR + +S R + LQ + + W + + + +
Sbjct: 1 MILDVFSEEYGRITLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS---MKTLRQAEPIS 57
Query: 78 CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELM 137
L + + R L P L+ L + EL
Sbjct: 58 LGLPLFGINLYSAMYVNELVGRVLMAEVPMPALFHDYLHALTELAQSDNPEPGLRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL ++G+G+D C TG D + L E + +
Sbjct: 118 LLSSMGYGVDFLHCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLGNELIAISERRFV 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ LK+A + T + AL+ + RE F+
Sbjct: 178 TKEQLKAAKRFT-----RMALKPYLGGKPLKSRELFI 209
>gi|229086867|ref|ZP_04219027.1| DNA repair protein recO [Bacillus cereus Rock3-44]
gi|228696442|gb|EEL49267.1| DNA repair protein recO [Bacillus cereus Rock3-44]
Length = 252
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + II+ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 5 MFQKVEGIIIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLASISQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISSMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHHEADFVAFSVREGGFLCSHHAEQ 183
>gi|254481220|ref|ZP_05094465.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2148]
gi|214038383|gb|EEB79045.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2148]
Length = 243
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 15/232 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRVNWRSRLA 63
IL R Y + ++ILEV ++GR + + +LQ + +++ R
Sbjct: 9 YILHSRPYRDSSLILEVFCAEHGRLSLVSKGARRRSKGGSSVALLQPFIPLLLSFSGRSE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ V + A L G+ L R L +P +L+ L
Sbjct: 69 ---MKTLTHVEPAGVAPQLRGERLFSGMYINELLMRLLHRHDPHPQLFANYGTALGELGD 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDL--TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + EL LL +G+G L +++D + G V G A
Sbjct: 126 AEEVEVCLRRFELGLLDELGYGFSLAEDGLSGEAISEDGWYHFSPDCGLVAGVKGANPAR 185
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L + ++ A + L + L + R+ F
Sbjct: 186 PAYSGAELLLLSQGKYGGEARSVARR-----LMREVLAQYLGSEPLKSRDLF 232
>gi|299535812|ref|ZP_07049133.1| DNA repair protein RecO [Lysinibacillus fusiformis ZC1]
gi|298729012|gb|EFI69566.1| DNA repair protein RecO [Lysinibacillus fusiformis ZC1]
Length = 261
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 5/222 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I+L VR+YGE N I+ ++TR+ G+ R + + +
Sbjct: 1 MLHKWEGIVLKVRAYGESNKIVILLTREAGKVATMARGAKKPSSRLASITQPFTYGMFMV 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G + E L S Y + + R + E +P +D+L L
Sbjct: 61 QHHTGMGTLQQGEHLNSMRHIREDIMATAYASYIMELVERVVEEGKPEPFAFDVLLHALQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL-- 177
+ I + +E +L G L C G S GG +C
Sbjct: 121 AIEDGYDPEAITLFVEWKMLPYTGVQPILHACAACGAVDGEFAFSFAQGGFLCHRCYQHD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA--FQLTDYFLNKYA 217
PY ++ L + TI D + + T YF+ K
Sbjct: 181 PYIIRLTPTQLKLIRMFYTIPIDQIGKIELKKETKYFIKKII 222
>gi|327440929|dbj|BAK17294.1| recombinational DNA repair protein [Solibacillus silvestris
StLB046]
Length = 257
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 11/247 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L R+YGE N I+ +MTR+ G+ R + + + ++
Sbjct: 1 MLHKWEGIVLKARAYGESNKIVTLMTREAGKVACMARGAKKPTSRLAGVTQTFMHGSFLV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E S Y + + R + E P +D+L LN
Sbjct: 61 QRTSGMGTLQQGEHFNSMRHIQTDIVATAYASYIVEIVDRLVEEGRPEPYAFDILIQALN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG--L 177
+ I + ++ +L G L C G S GG +C
Sbjct: 121 AIEEGYDPEAITLFVDWKMLPFAGIQPILHACAGCGAVDGEFAFSFTQGGFICHRCFHLD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQL---TDYFLNK---YALQHNIIHCHLLREN 231
PY ++ L + T+ + + +L T F+ K + R
Sbjct: 181 PYIIRLSPTQLKLIRMFYTVPIEQVGK-LELKPQTKQFIKKIVTTIYEEQTGIRLKSRN- 238
Query: 232 FLGKLLE 238
F+ +L
Sbjct: 239 FIEQLER 245
>gi|315282356|ref|ZP_07870784.1| DNA repair protein RecO [Listeria marthii FSL S4-120]
gi|313613998|gb|EFR87714.1| DNA repair protein RecO [Listeria marthii FSL S4-120]
Length = 255
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDRDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|229019522|ref|ZP_04176339.1| DNA repair protein recO [Bacillus cereus AH1273]
gi|229025764|ref|ZP_04182163.1| DNA repair protein recO [Bacillus cereus AH1272]
gi|228735472|gb|EEL86068.1| DNA repair protein recO [Bacillus cereus AH1272]
gi|228741778|gb|EEL91961.1| DNA repair protein recO [Bacillus cereus AH1273]
Length = 252
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLAAVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ Y I + +++ L++ML L+
Sbjct: 65 QIGSGLGTLQQGEIISSMKEIREDIFLTAYASFIIELTDKATEDKKNNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|228993040|ref|ZP_04152963.1| DNA repair protein recO [Bacillus pseudomycoides DSM 12442]
gi|228999090|ref|ZP_04158672.1| DNA repair protein recO [Bacillus mycoides Rock3-17]
gi|229006638|ref|ZP_04164272.1| DNA repair protein recO [Bacillus mycoides Rock1-4]
gi|228754499|gb|EEM03910.1| DNA repair protein recO [Bacillus mycoides Rock1-4]
gi|228760707|gb|EEM09671.1| DNA repair protein recO [Bacillus mycoides Rock3-17]
gi|228766688|gb|EEM15328.1| DNA repair protein recO [Bacillus pseudomycoides DSM 12442]
Length = 252
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + ++ ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASISQLMMHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML+ L+
Sbjct: 65 QMGSGLGTLQQGEIISSMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLHQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDAEVLSLIYQTKMLPVLGMHPYFDTCAICHQEADFVAFSVREGGFLCSRHAQQ 183
>gi|149183347|ref|ZP_01861785.1| DNA repair protein RecO [Bacillus sp. SG-1]
gi|148848944|gb|EDL63156.1| DNA repair protein RecO [Bacillus sp. SG-1]
Length = 250
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 3/189 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M + + I++ +YGE N I+ + +R+ G+ R + R+ + Q +
Sbjct: 1 MLQKCEGIVIRTNNYGESNKIVTIYSRENGKLGVMARGAKKTNSRLSSVSQLFTYGYFLY 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + + + + S Y + + + ER+P L++ML L
Sbjct: 61 Q-KSSGLGTLQQADTIASMRNIREDLFKTAYATYVVDLIDKGTEERKPNPFLFEMLFQTL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E+ +L +G L KC V G T+ S K G +C
Sbjct: 120 TYINEEYDPDIVTHIFEMKMLPVLGLHPSLDKCAVCGETEGEFSFSFKENGIICHRCIGN 179
Query: 179 YAEKMLVLP 187
V P
Sbjct: 180 DPYHYKVSP 188
>gi|187924873|ref|YP_001896515.1| DNA repair protein RecO [Burkholderia phytofirmans PsJN]
gi|187716067|gb|ACD17291.1| DNA repair protein RecO [Burkholderia phytofirmans PsJN]
Length = 309
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 11/234 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V++R +GR + + + +LQ + ++W +
Sbjct: 80 PAFVLHSYPYRETSLIIDVLSRDHGRLALVAKGAKRPHSALRGVLQTFQPLALSWSGKSE 139
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ L G L +F +P +L+ + +
Sbjct: 140 VRT---LTGAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPQLFHHYVVTMTRLAH 196
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-K 182
++ E +LL+ G+ + L + V V + A
Sbjct: 197 DEPPVQVLRSFERVLLRETGYAMALDRTVARKAVLADGRYVFDPERGVREASDDLPALWP 256
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
++ + L E+ + + L ++ L + L R+ +
Sbjct: 257 VIAGQTLLDMEQDDYHRAQTVAQSKT----LMRFLLNTYLGGTPLATRQILIDL 306
>gi|198283251|ref|YP_002219572.1| DNA repair protein RecO [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665687|ref|YP_002425834.1| DNA repair protein RecO, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|254790501|sp|B7J9K3|RECO_ACIF2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790502|sp|B5EQL5|RECO_ACIF5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|198247772|gb|ACH83365.1| DNA repair protein RecO [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517900|gb|ACK78486.1| DNA repair protein RecO, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 255
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 12/240 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN-GQSHRMQPILQAGNLVRVNWRSRLA 63
D A +L YG+ ++I+E+ TR GR + ++ ++AG + V W R
Sbjct: 7 DRAWVLHHYPYGDTSLIVELFTRTQGRLGVLAKGARRARSALARIEAGRPLWVRWLGRGE 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + E L+ L L R R+P +L+ + ++
Sbjct: 67 LPV---LAQAEELGPFLPLNPLQNLSLFYVNELLLRLTQRRDPFPDLFQVYEETIDALCS 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD----LLWVSPKSGGAVCRSVGLPY 179
G + E LL+N+G+ DL C G + D W+ + G CR+
Sbjct: 124 EPGEGWYLRRFERRLLENLGWAPDLAHCAECGRSPDAASSEHWLYQAAHGVFCRAHAPDA 183
Query: 180 AEKMLVLPSF-LWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
A + L QT S+ + L + L H R L
Sbjct: 184 AVAIEAAALVWLRGAMQTRSMPVWNSSLRRC---LEQELLVHLGGRPLESRRLLTAYLRR 240
>gi|317128321|ref|YP_004094603.1| DNA repair protein RecO [Bacillus cellulosilyticus DSM 2522]
gi|315473269|gb|ADU29872.1| DNA repair protein RecO [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 1/185 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + +++ YGE N I+ + TR+ G+ R + + + A V +
Sbjct: 1 MLQKVEGLVIRTNDYGETNKIVTIFTRENGKIALMARGAKRPKSRFASSAQIFVYGIFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +G + +V++S L +G + + R +RE L+++L
Sbjct: 61 QSSTGIGTLSQSDVIDSFRDVRSDLKLTAHGAYIVELIDRLTEDRERNPFLFELLYQTFQ 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E +L G LT+C G + S K G +C
Sbjct: 121 FLNEGLDPEILTRIFETKMLHVAGVTPVLTQCTSCGSESEFYVFSMKQAGLLCGRCQYED 180
Query: 180 AEKML 184
+
Sbjct: 181 PNHIK 185
>gi|313623741|gb|EFR93883.1| DNA repair protein RecO [Listeria innocua FSL J1-023]
Length = 255
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 1/186 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ SY E + I+ + TR++G+ R + + + +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGGNG 64
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LG + EV+E+ + Y L + ER+P LY++ L
Sbjct: 65 LGTLQQGEVIENFSFIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDIDEG 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S +S G +C +M
Sbjct: 125 YDPQILTQIYEMKMLPVLGLYPTMDKCAICGETTGHFDFSTRSNGIICHRCFDKDRYRMH 184
Query: 185 VLPSFL 190
+ + +
Sbjct: 185 LPENVV 190
>gi|229098769|ref|ZP_04229707.1| DNA repair protein recO [Bacillus cereus Rock3-29]
gi|229104929|ref|ZP_04235586.1| DNA repair protein recO [Bacillus cereus Rock3-28]
gi|229117794|ref|ZP_04247159.1| DNA repair protein recO [Bacillus cereus Rock1-3]
gi|228665657|gb|EEL21134.1| DNA repair protein recO [Bacillus cereus Rock1-3]
gi|228678503|gb|EEL32723.1| DNA repair protein recO [Bacillus cereus Rock3-28]
gi|228684613|gb|EEL38553.1| DNA repair protein recO [Bacillus cereus Rock3-29]
Length = 252
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ Y + + +++ L++ML L+
Sbjct: 65 QVGSGLGTLQQGEIISTMKEIREDIFLTAYASFVVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|146306509|ref|YP_001186974.1| DNA repair protein RecO [Pseudomonas mendocina ymp]
gi|145574710|gb|ABP84242.1| DNA replication and repair protein RecO [Pseudomonas mendocina ymp]
Length = 229
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 13/233 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A +L R Y E + +++ T GR +R + ++ I + + + R R
Sbjct: 5 AYVLHSRPYKESSALVDFFTV-QGRVRAVLRAARG-KVGSIARPFAPLELELRGRGELKT 62
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + LLS GL L R LP +P + + + L
Sbjct: 63 ---VGRLESAGIPLLLSGEALFSGLYLNELLIRLLPAEDPHPVMLEHYGLTLQALAADRP 119
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ + E LL +G+G L + + + + L
Sbjct: 120 LEPLLRAFEWRLLDELGYGFALDRDQHDQPIDPTALYRWQHDIGLVPVIQLQ-PGVFQGR 178
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGKLLE 238
E +L +A + L + AL ++ L RE F+ L E
Sbjct: 179 ELLAMAEADWQTPGALAAAKR-----LMRQALAPHLGGRPLVSRELFM-TLKE 225
>gi|256821982|ref|YP_003145945.1| DNA repair protein RecO [Kangiella koreensis DSM 16069]
gi|256795521|gb|ACV26177.1| DNA repair protein RecO [Kangiella koreensis DSM 16069]
Length = 239
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 6/178 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRVNWRSRLA 63
A +L R + E ++I+E+ T + GR + + +R + +LQ ++V+W R
Sbjct: 9 AFVLHTRPFKETSLIVELFTEESGRVNVLAKGVRGNRKNSNRALLQPFQPIKVSWFGRSE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L+ L L L R + +P +++ L ++
Sbjct: 69 LKTLKQVEAD---GFSHRLNGIASLSALYLNELLLRLFIQWDPHPDIFHFYQTSLQHLQL 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I + EL LL +G+ +D + ++ + + + P
Sbjct: 126 GDKPNLILREFELELLDVLGYAIDWQHDIYGDAIEENMTYGFIAEQGFIPQLQAPSET 183
>gi|291613751|ref|YP_003523908.1| DNA repair protein RecO [Sideroxydans lithotrophicus ES-1]
gi|291583863|gb|ADE11521.1| DNA repair protein RecO [Sideroxydans lithotrophicus ES-1]
Length = 243
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 8/221 (3%)
Query: 2 YWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
QD+ A +L + E ++ILEV +R++GR R + R + +L ++++W
Sbjct: 9 RIQDEPAFVLHSYPFRETSLILEVFSRRHGRVALVARGARRPRSALRGLLMGFQPLQMSW 68
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ L + L G L + +P L+D L
Sbjct: 69 FGKHELRTLH---SAEWQGGQPQLQGTALLCGFYLNELLLNLMARDDPHESLFDYYLQTL 125
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGL 177
E +L+ +G+ L L +G +
Sbjct: 126 QRLAQEDDHAFTLRCFEKHMLQELGYALLLENEADSGSPIVPTRNYRYILERGAIAEMAD 185
Query: 178 PYAEKMLVLPSFLWKEEQTI-DADSLKSAFQLTDYFLNKYA 217
+ + L DA+S + + QL L+ +
Sbjct: 186 SSQGMPVSGKTLLDMAADDYRDANSARQSKQLMRMLLDHHL 226
>gi|152976729|ref|YP_001376246.1| DNA repair protein RecO [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189039649|sp|A7GSZ3|RECO_BACCN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|152025481|gb|ABS23251.1| DNA repair protein RecO [Bacillus cytotoxicus NVH 391-98]
Length = 248
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISVMARGAKKPKSRLASISQLMTHGHFLI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + E++ S L Y + + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEMISSMKEIREDIFLTAYASFIVELTDKATEDKKNNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCDGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETDFVAFSVREGGFLCFRHAEQ 179
>gi|251793348|ref|YP_003008076.1| DNA repair protein RecO [Aggregatibacter aphrophilus NJ8700]
gi|247534743|gb|ACS97989.1| DNA repair protein RecO [Aggregatibacter aphrophilus NJ8700]
Length = 214
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 11/217 (5%)
Query: 22 LEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCA 79
+++ T +GR + ++ R + +LQ + + W R + + A
Sbjct: 1 MDLFTEDFGRLSVLAKGVRAKRSMLKGVLQPFTPLLLRWSGRGDLKVLTKAEP---AAIA 57
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLL 139
L G + R L +L+ L + + E LL
Sbjct: 58 LPLQHVALYSGFYLNELICRVLEPETAYPQLFQQYLHCLTRLAVNQDVEPALRTFEFQLL 117
Query: 140 KNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDA 199
+ +G+G+D T C +G + + + +++ + +
Sbjct: 118 RTLGYGIDFTHCAGSGKAVEADMTYRYREEKGFIASLIKDNLTFYGRELLAFEQTRFEEP 177
Query: 200 DSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
L +A + T + AL+ + RE F
Sbjct: 178 TILLAAKRFT-----RIALKPYLGDKPLKSRELFTQY 209
>gi|297584642|ref|YP_003700422.1| DNA repair protein RecO [Bacillus selenitireducens MLS10]
gi|297143099|gb|ADH99856.1| DNA repair protein RecO [Bacillus selenitireducens MLS10]
Length = 256
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 1/191 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I++ YGE N ++ V +++ G+ R + + V+ +
Sbjct: 1 MLHRVEGIVIRANDYGENNKVVTVYSKEQGKVALMARGAKKPGSRFAASTQLFVQAVFVY 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R +++ES + L YG I + R + + P +LY+ L L
Sbjct: 61 HRQHGMGSLNAADLIESFISVRKDVLLTTYGACMIELIDRLVEDHIPDGQLYETLYQLLR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ +E+ +L+ G L +C G + S GGA+C+
Sbjct: 121 RLDEGDDPAVLLAIMEVKMLRYAGVDPVLHQCASCGSVELPFQFSMTYGGALCKRCLHKD 180
Query: 180 AEKMLVLPSFL 190
+ V P+ +
Sbjct: 181 HHVVYVNPAVM 191
>gi|229013518|ref|ZP_04170652.1| DNA repair protein recO [Bacillus mycoides DSM 2048]
gi|229061991|ref|ZP_04199317.1| DNA repair protein recO [Bacillus cereus AH603]
gi|229135123|ref|ZP_04263925.1| DNA repair protein recO [Bacillus cereus BDRD-ST196]
gi|229169046|ref|ZP_04296762.1| DNA repair protein recO [Bacillus cereus AH621]
gi|228614455|gb|EEK71564.1| DNA repair protein recO [Bacillus cereus AH621]
gi|228648352|gb|EEL04385.1| DNA repair protein recO [Bacillus cereus BDRD-ST196]
gi|228717300|gb|EEL68973.1| DNA repair protein recO [Bacillus cereus AH603]
gi|228747755|gb|EEL97624.1| DNA repair protein recO [Bacillus mycoides DSM 2048]
Length = 252
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ Y I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISSMKEIREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|310822251|ref|YP_003954609.1| DNA repair protein RecO [Stigmatella aurantiaca DW4/3-1]
gi|309395323|gb|ADO72782.1| DNA repair protein RecO [Stigmatella aurantiaca DW4/3-1]
Length = 244
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 3/178 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ D+A++L YGE + ++ ++TRQ+G+ F + + + L+ +RV+
Sbjct: 3 RFVDEALVLSTVDYGEADRMVTLLTRQHGKLTAFAAGARKSKRRFAGALEPFMYLRVHLV 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++L + A L L ++ + EP EL+ +L +L
Sbjct: 63 ETRGSTVRLDSTDILAGYYAARQELPLIARALYAVEMCRELTRDHEPHPELFALLEEYLV 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL-WVSPKSGGAVCRSVG 176
+ EL L + G C + G GGAVC G
Sbjct: 123 RLNAKEAGPTSLLAFELSALAHAGLMPRFDACALCGGEPGERPRFDQAHGGAVCEPCG 180
>gi|228910132|ref|ZP_04073952.1| DNA repair protein recO [Bacillus thuringiensis IBL 200]
gi|228954582|ref|ZP_04116607.1| DNA repair protein recO [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|229071801|ref|ZP_04205016.1| DNA repair protein recO [Bacillus cereus F65185]
gi|229081558|ref|ZP_04214056.1| DNA repair protein recO [Bacillus cereus Rock4-2]
gi|229180575|ref|ZP_04307917.1| DNA repair protein recO [Bacillus cereus 172560W]
gi|229192507|ref|ZP_04319470.1| DNA repair protein recO [Bacillus cereus ATCC 10876]
gi|228591084|gb|EEK48940.1| DNA repair protein recO [Bacillus cereus ATCC 10876]
gi|228602999|gb|EEK60478.1| DNA repair protein recO [Bacillus cereus 172560W]
gi|228701763|gb|EEL54251.1| DNA repair protein recO [Bacillus cereus Rock4-2]
gi|228711396|gb|EEL63356.1| DNA repair protein recO [Bacillus cereus F65185]
gi|228805239|gb|EEM51833.1| DNA repair protein recO [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228849649|gb|EEM94483.1| DNA repair protein recO [Bacillus thuringiensis IBL 200]
Length = 252
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + +
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|163942054|ref|YP_001646938.1| DNA repair protein RecO [Bacillus weihenstephanensis KBAB4]
gi|229470329|sp|A9VHS5|RECO_BACWK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|163864251|gb|ABY45310.1| DNA repair protein RecO [Bacillus weihenstephanensis KBAB4]
Length = 248
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R++G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ Y I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISSMKEIREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|206971346|ref|ZP_03232297.1| DNA repair protein RecO [Bacillus cereus AH1134]
gi|206734118|gb|EDZ51289.1| DNA repair protein RecO [Bacillus cereus AH1134]
Length = 248
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + +
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|228941463|ref|ZP_04104014.1| DNA repair protein recO [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228960563|ref|ZP_04122212.1| DNA repair protein recO [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228974394|ref|ZP_04134963.1| DNA repair protein recO [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980987|ref|ZP_04141290.1| DNA repair protein recO [Bacillus thuringiensis Bt407]
gi|229048017|ref|ZP_04193593.1| DNA repair protein recO [Bacillus cereus AH676]
gi|229111771|ref|ZP_04241319.1| DNA repair protein recO [Bacillus cereus Rock1-15]
gi|229146883|ref|ZP_04275248.1| DNA repair protein recO [Bacillus cereus BDRD-ST24]
gi|228636711|gb|EEK93176.1| DNA repair protein recO [Bacillus cereus BDRD-ST24]
gi|228671765|gb|EEL27061.1| DNA repair protein recO [Bacillus cereus Rock1-15]
gi|228723474|gb|EEL74843.1| DNA repair protein recO [Bacillus cereus AH676]
gi|228778778|gb|EEM27042.1| DNA repair protein recO [Bacillus thuringiensis Bt407]
gi|228785444|gb|EEM33454.1| DNA repair protein recO [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228799163|gb|EEM46131.1| DNA repair protein recO [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228818244|gb|EEM64318.1| DNA repair protein recO [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 252
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|296504792|ref|YP_003666492.1| DNA repair protein RecO [Bacillus thuringiensis BMB171]
gi|296325844|gb|ADH08772.1| DNA repair protein RecO [Bacillus thuringiensis BMB171]
gi|326942080|gb|AEA17976.1| DNA repair protein RecO [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 248
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|328474972|gb|EGF45766.1| DNA repair protein RecO [Listeria monocytogenes 220]
Length = 254
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 2/186 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-SHRMQPILQAGNLVRVNWRSRLAQ 64
+ I++ SY E + I+ + TR++G+ R + R+ + Q +
Sbjct: 5 EGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKTKSRLAAVTQLFTNGYFTFFGSNGL 64
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ +E+ + + Y L + ER+P LY++ L
Sbjct: 65 GTLQQGEV-IENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDINEG 123
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ E+ +L +G + KC + G T S S G +C +M
Sbjct: 124 YDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDRYRMH 183
Query: 185 VLPSFL 190
+ + +
Sbjct: 184 LPENVV 189
>gi|65321671|ref|ZP_00394630.1| COG1381: Recombinational DNA repair protein (RecF pathway)
[Bacillus anthracis str. A2012]
gi|228916930|ref|ZP_04080492.1| DNA repair protein recO [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228929341|ref|ZP_04092366.1| DNA repair protein recO [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935618|ref|ZP_04098433.1| DNA repair protein recO [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948011|ref|ZP_04110297.1| DNA repair protein recO [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229093367|ref|ZP_04224474.1| DNA repair protein recO [Bacillus cereus Rock3-42]
gi|229123836|ref|ZP_04253030.1| DNA repair protein recO [Bacillus cereus 95/8201]
gi|229141035|ref|ZP_04269578.1| DNA repair protein recO [Bacillus cereus BDRD-ST26]
gi|229157912|ref|ZP_04285986.1| DNA repair protein recO [Bacillus cereus ATCC 4342]
gi|229163243|ref|ZP_04291198.1| DNA repair protein recO [Bacillus cereus R309803]
gi|229186537|ref|ZP_04313699.1| DNA repair protein recO [Bacillus cereus BGSC 6E1]
gi|229198424|ref|ZP_04325130.1| DNA repair protein recO [Bacillus cereus m1293]
gi|228585124|gb|EEK43236.1| DNA repair protein recO [Bacillus cereus m1293]
gi|228596968|gb|EEK54626.1| DNA repair protein recO [Bacillus cereus BGSC 6E1]
gi|228620306|gb|EEK77177.1| DNA repair protein recO [Bacillus cereus R309803]
gi|228625571|gb|EEK82324.1| DNA repair protein recO [Bacillus cereus ATCC 4342]
gi|228642468|gb|EEK98756.1| DNA repair protein recO [Bacillus cereus BDRD-ST26]
gi|228659657|gb|EEL15303.1| DNA repair protein recO [Bacillus cereus 95/8201]
gi|228690023|gb|EEL43824.1| DNA repair protein recO [Bacillus cereus Rock3-42]
gi|228811701|gb|EEM58036.1| DNA repair protein recO [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824058|gb|EEM69875.1| DNA repair protein recO [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830355|gb|EEM75967.1| DNA repair protein recO [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842754|gb|EEM87840.1| DNA repair protein recO [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 252
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|30264368|ref|NP_846745.1| DNA repair protein RecO [Bacillus anthracis str. Ames]
gi|47778304|ref|YP_021168.2| DNA repair protein RecO [Bacillus anthracis str. 'Ames Ancestor']
gi|49187194|ref|YP_030446.1| DNA repair protein RecO [Bacillus anthracis str. Sterne]
gi|49481310|ref|YP_038354.1| DNA repair protein RecO [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141205|ref|YP_085625.1| DNA repair protein RecO [Bacillus cereus E33L]
gi|165872031|ref|ZP_02216671.1| recombination protein O [Bacillus anthracis str. A0488]
gi|167634555|ref|ZP_02392875.1| recombination protein O [Bacillus anthracis str. A0442]
gi|167638589|ref|ZP_02396865.1| recombination protein O [Bacillus anthracis str. A0193]
gi|170687502|ref|ZP_02878719.1| recombination protein O [Bacillus anthracis str. A0465]
gi|170707433|ref|ZP_02897887.1| recombination protein O [Bacillus anthracis str. A0389]
gi|177653249|ref|ZP_02935501.1| recombination protein O [Bacillus anthracis str. A0174]
gi|190566916|ref|ZP_03019832.1| recombination protein O [Bacillus anthracis Tsiankovskii-I]
gi|196039289|ref|ZP_03106595.1| recombination protein O [Bacillus cereus NVH0597-99]
gi|196046321|ref|ZP_03113547.1| recombination protein O [Bacillus cereus 03BB108]
gi|217961788|ref|YP_002340358.1| DNA repair protein RecO [Bacillus cereus AH187]
gi|218905435|ref|YP_002453269.1| recombination protein O [Bacillus cereus AH820]
gi|225866279|ref|YP_002751657.1| DNA repair protein RecO [Bacillus cereus 03BB102]
gi|227817074|ref|YP_002817083.1| DNA repair protein RecO [Bacillus anthracis str. CDC 684]
gi|229603091|ref|YP_002868587.1| DNA repair protein RecO [Bacillus anthracis str. A0248]
gi|254684055|ref|ZP_05147915.1| DNA repair protein RecO [Bacillus anthracis str. CNEVA-9066]
gi|254721889|ref|ZP_05183678.1| DNA repair protein RecO [Bacillus anthracis str. A1055]
gi|254736403|ref|ZP_05194109.1| DNA repair protein RecO [Bacillus anthracis str. Western North
America USA6153]
gi|254741441|ref|ZP_05199128.1| DNA repair protein RecO [Bacillus anthracis str. Kruger B]
gi|254750879|ref|ZP_05202918.1| DNA repair protein RecO [Bacillus anthracis str. Vollum]
gi|254757793|ref|ZP_05209820.1| DNA repair protein RecO [Bacillus anthracis str. Australia 94]
gi|301055791|ref|YP_003794002.1| DNA repair protein RecO [Bacillus anthracis CI]
gi|42559458|sp|Q81LT9|RECO_BACAN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|61214838|sp|Q634P2|RECO_BACCZ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|61215015|sp|Q6HDM2|RECO_BACHK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737854|sp|B7JN23|RECO_BACC0 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737857|sp|B7HPJ7|RECO_BACC7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790509|sp|C3P8K4|RECO_BACAA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790510|sp|C3L5Q1|RECO_BACAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790511|sp|C1ESJ2|RECO_BACC3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|30259026|gb|AAP28231.1| DNA repair protein RecO [Bacillus anthracis str. Ames]
gi|47552009|gb|AAT33643.2| recombination protein O [Bacillus anthracis str. 'Ames Ancestor']
gi|49181121|gb|AAT56497.1| recombination protein O [Bacillus anthracis str. Sterne]
gi|49332866|gb|AAT63512.1| recombination protein O (DNA repair protein) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51974674|gb|AAU16224.1| recombination protein O (DNA repair protein O) [Bacillus cereus
E33L]
gi|164712162|gb|EDR17699.1| recombination protein O [Bacillus anthracis str. A0488]
gi|167513437|gb|EDR88807.1| recombination protein O [Bacillus anthracis str. A0193]
gi|167530007|gb|EDR92742.1| recombination protein O [Bacillus anthracis str. A0442]
gi|170127677|gb|EDS96550.1| recombination protein O [Bacillus anthracis str. A0389]
gi|170668697|gb|EDT19443.1| recombination protein O [Bacillus anthracis str. A0465]
gi|172081531|gb|EDT66603.1| recombination protein O [Bacillus anthracis str. A0174]
gi|190561907|gb|EDV15876.1| recombination protein O [Bacillus anthracis Tsiankovskii-I]
gi|196022791|gb|EDX61472.1| recombination protein O [Bacillus cereus 03BB108]
gi|196029916|gb|EDX68517.1| recombination protein O [Bacillus cereus NVH0597-99]
gi|217063057|gb|ACJ77307.1| recombination protein O [Bacillus cereus AH187]
gi|218539840|gb|ACK92238.1| recombination protein O [Bacillus cereus AH820]
gi|225789516|gb|ACO29733.1| DNA repair protein RecO [Bacillus cereus 03BB102]
gi|227007270|gb|ACP17013.1| DNA repair protein RecO [Bacillus anthracis str. CDC 684]
gi|229267499|gb|ACQ49136.1| DNA repair protein RecO [Bacillus anthracis str. A0248]
gi|300377960|gb|ADK06864.1| DNA repair protein RecO [Bacillus cereus biovar anthracis str. CI]
gi|324328202|gb|ADY23462.1| DNA repair protein RecO [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 248
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|228987548|ref|ZP_04147667.1| DNA repair protein recO [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772280|gb|EEM20727.1| DNA repair protein recO [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 252
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTIDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|229031946|ref|ZP_04187933.1| DNA repair protein recO [Bacillus cereus AH1271]
gi|229174972|ref|ZP_04302492.1| DNA repair protein recO [Bacillus cereus MM3]
gi|228608640|gb|EEK65942.1| DNA repair protein recO [Bacillus cereus MM3]
gi|228729410|gb|EEL80400.1| DNA repair protein recO [Bacillus cereus AH1271]
Length = 252
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + N+
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|228923050|ref|ZP_04086343.1| DNA repair protein recO [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836683|gb|EEM82031.1| DNA repair protein recO [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 252
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|47567862|ref|ZP_00238570.1| DNA repair protein RecO [Bacillus cereus G9241]
gi|118479468|ref|YP_896619.1| DNA repair protein RecO [Bacillus thuringiensis str. Al Hakam]
gi|222097743|ref|YP_002531800.1| DNA repair protein reco [Bacillus cereus Q1]
gi|47555539|gb|EAL13882.1| DNA repair protein RecO [Bacillus cereus G9241]
gi|118418693|gb|ABK87112.1| DNA replication and repair protein RecO [Bacillus thuringiensis
str. Al Hakam]
gi|221241801|gb|ACM14511.1| recombination protein O [Bacillus cereus Q1]
Length = 257
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 10 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLI 69
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 70 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 129
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 130 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 188
>gi|228902821|ref|ZP_04066966.1| DNA repair protein recO [Bacillus thuringiensis IBL 4222]
gi|228967363|ref|ZP_04128398.1| DNA repair protein recO [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228792398|gb|EEM39965.1| DNA repair protein recO [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228856830|gb|EEN01345.1| DNA repair protein recO [Bacillus thuringiensis IBL 4222]
Length = 252
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKISAMARGAKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|218899464|ref|YP_002447875.1| recombination protein O [Bacillus cereus G9842]
gi|226737855|sp|B7IYE9|RECO_BACC2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218545290|gb|ACK97684.1| recombination protein O [Bacillus cereus G9842]
Length = 248
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKISAMARGAKKPKSRLASVSQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|75761899|ref|ZP_00741824.1| DNA repair protein recO [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74490607|gb|EAO53898.1| DNA repair protein recO [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 257
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 10 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKISAMARGAKKPKSRLASVSQLMTHGHFLI 69
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 70 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 129
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 130 YMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 188
>gi|5114185|gb|AAD40231.1|AF123492_3 RecO [Pseudomonas aeruginosa]
Length = 203
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 5/156 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+L R Y E + +++ T GR +R + + + + + WR R
Sbjct: 10 YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARG-KAGALARPFVPLEAEWRGRGELKT- 66
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + LL+ GL L R LP +P E++ L I
Sbjct: 67 --VARLESAGVPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPI 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ E LL+ +G+G L + +
Sbjct: 125 EPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALY 160
>gi|148981905|ref|ZP_01816563.1| DNA repair protein RecO [Vibrionales bacterium SWAT-3]
gi|145960706|gb|EDK26048.1| DNA repair protein RecO [Vibrionales bacterium SWAT-3]
Length = 222
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 11/217 (5%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESH 77
+IL++ + ++GR + +S R + LQ + + W + + +
Sbjct: 1 MILDIFSEEFGRVTLMSKGARSKRSNLKGALQPFTPLLLKWSGNSS---MKTLRQAEPIS 57
Query: 78 CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELM 137
L+ + + R L P L+ L + EL
Sbjct: 58 LGLPLTGINLYSAMYVNELIGRVLMAEVPMPALFHDYLHALTELAHNENPEPALRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL +G+G+D C TG D + + E + I
Sbjct: 118 LLSAMGYGVDFLHCAGTGEPIDPTMTYRYREQKGFIASVRRDNLTFMGDELIAISERRFI 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ LK+A + T + AL+ + RE FL
Sbjct: 178 TKEQLKAAKRFT-----RIALKPYLGGKPLKSRELFL 209
>gi|319651592|ref|ZP_08005719.1| DNA repair protein RecO [Bacillus sp. 2_A_57_CT2]
gi|317396659|gb|EFV77370.1| DNA repair protein RecO [Bacillus sp. 2_A_57_CT2]
Length = 250
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I++ +Y E N I+ + TR++G+ R + + N+
Sbjct: 1 MLDKCEGIVIRTTNYSETNKIVTLYTREWGKVGVMARGAKKPNSRLAAVTQLFTYGNFLV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + +++ S + L Y + + + +++P L+++L LN
Sbjct: 61 QRGSGLGTLQQGDMISSMRSIKEDIFLTAYASYIVDLTDKSIEDKKPNPFLFELLYQTLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ E+ +L +G L +C V G T S + G +C
Sbjct: 121 LINEGYDPEILTNIYEMKMLNALGLYPVLDQCSVCGSTDGHFAFSIRENGLICHRCLDK 179
>gi|114564091|ref|YP_751605.1| DNA repair protein RecO [Shewanella frigidimarina NCIMB 400]
gi|114335384|gb|ABI72766.1| DNA repair protein RecO [Shewanella frigidimarina NCIMB 400]
Length = 240
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 15/239 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA- 63
+L R + E ++I+ ++ GR R ++ ILQ + + + ++
Sbjct: 6 RGYVLHHRQFRESSVIVNLLVEGVGRVDAITRVGSGKRSIKSILQPFQPLIIQFSAKSEA 65
Query: 64 -QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ ++ + A LS + G L R L L+ + L
Sbjct: 66 RNLGLKNITQIESAAPAMPLSGNSLYSGFYLNEILVRLLSVDHQAEGLFLDYHRALLALA 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG-----AVCRSVGL 177
+ E+ LL +G L + + A +
Sbjct: 126 KQFCSSHLR-YFEMALLLELGALPSLAYDTQGDSLDNRCHYRFIAESGFIPVATTQESPF 184
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + L L Q + + A L +Y L + + L R+ F K
Sbjct: 185 SHGKGCLSGAMLLALASQNLQPEQFNQAKG-----LMRYLLTPLLGNKPLLSRQLFSNK 238
>gi|229543821|ref|ZP_04432880.1| DNA repair protein RecO [Bacillus coagulans 36D1]
gi|229324960|gb|EEN90636.1| DNA repair protein RecO [Bacillus coagulans 36D1]
Length = 255
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 1/176 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N IL + T+++G+ R + + + N+
Sbjct: 1 MFEKCEGIVIKNTDYGESNKILHIYTKEFGKLGFMARGAKKPNSRLAAVSQVFTYGNFLF 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ L + E + Y + L R + +++ L+++L L
Sbjct: 61 QPSRGLATLQQGETVSPMRHIREDIFKTAYAAYVVELLGRAVEDKKKNPSLFELLLRTLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I E+ +L +G + KC V G T+ S + G +C
Sbjct: 121 YIDEGYDPEIIRDIFEMKMLNVLGMYPVMDKCAVCGNTEGPFAFSIRENGLLCPRC 176
>gi|91775219|ref|YP_544975.1| DNA repair protein RecO [Methylobacillus flagellatus KT]
gi|91775363|ref|YP_545119.1| DNA repair protein RecO [Methylobacillus flagellatus KT]
gi|91709206|gb|ABE49134.1| DNA repair protein RecO [Methylobacillus flagellatus KT]
gi|91709350|gb|ABE49278.1| DNA replication and repair protein RecO [Methylobacillus
flagellatus KT]
Length = 244
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 13/234 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++++E+ +R++GR + + R + +LQA ++ W +
Sbjct: 15 YVLHTYPFKETSLVVELFSREFGRVAAVAKGARRPRSAMRGMLQAFQPLQATWSGKAELK 74
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ LL + G L R LP + L+D + L
Sbjct: 75 NLH---SMEWGAGLLLLRGEALMCGFYLNELLLRLLPREDGHDALFDYYSQTLRILAQDQ 131
Query: 126 -VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG--AVCRSVGLPYAEK 182
+ + EL +L+ +G+ + L + S + A P
Sbjct: 132 VPVATTLRRFELRMLQELGYAVPLEYDEAGNAIKPEHMYSYVAEQGAAPTSQHVAPPNGV 191
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
L + L + + + L + L H + R+ +
Sbjct: 192 QLSGKTLLAMAQDDYSDALTQQQSK----QLMRALLAHYLGDKPLHTRQLLMDL 241
>gi|126173441|ref|YP_001049590.1| DNA repair protein RecO [Shewanella baltica OS155]
gi|125996646|gb|ABN60721.1| DNA repair protein RecO [Shewanella baltica OS155]
Length = 236
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V + A LS G+ L R L + EL+ + + L
Sbjct: 63 KT---LTQVEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHNAEELFLIYHQALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +GF L++ + + + +G +
Sbjct: 120 FCQSQLR-YIELALLRELGFMPSLSRDTQGEP------LVAEDYYQLVPELGFQFVLNSR 172
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
++ ++ + L L+ L + L+ + L R+ F+
Sbjct: 173 ARNAYQGAMLTALNDNQLIDVHFLSAKLLMRSLLKPLLGTKPLLSRQLFVSA 224
>gi|229129575|ref|ZP_04258545.1| DNA repair protein recO [Bacillus cereus BDRD-Cer4]
gi|229152498|ref|ZP_04280690.1| DNA repair protein recO [Bacillus cereus m1550]
gi|228631106|gb|EEK87743.1| DNA repair protein recO [Bacillus cereus m1550]
gi|228653892|gb|EEL09760.1| DNA repair protein recO [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 5 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGSKKPKSRLASVSQLMTHGHFLI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 65 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 125 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 183
>gi|30022376|ref|NP_834007.1| DNA repair protein RecO [Bacillus cereus ATCC 14579]
gi|218231111|ref|YP_002369105.1| DNA repair protein RecO [Bacillus cereus B4264]
gi|42559457|sp|Q818G3|RECO_BACCR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226737856|sp|B7HCS2|RECO_BACC4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|29897934|gb|AAP11208.1| DNA repair protein recO [Bacillus cereus ATCC 14579]
gi|218159068|gb|ACK59060.1| recombination protein O [Bacillus cereus B4264]
Length = 248
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGSKKPKSRLASVSQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S ++ I + +++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEIREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|171463194|ref|YP_001797307.1| DNA repair protein RecO [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|254764652|sp|B1XTL6|RECO_POLNS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|171192732|gb|ACB43693.1| DNA repair protein RecO [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 244
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 12/219 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A +L Y E ++IL+V TRQYGR + + ++P+LQ + V+W +
Sbjct: 8 DEPAFVLHSIPYKETSLILDVFTRQYGRMALIAKGAKRQHSTLRPVLQRFQPLLVSWSGK 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E + + + L G L +FL + +LYD +N
Sbjct: 68 SELRT-LTKSEWVGGMPSLVGD--ALLCGFYLNELLVKFLAREDDYEKLYDRYAETINAL 124
Query: 122 KIPSVI----GKIFVQIELMLLKNIGFGLDLTKCVVTGV---TQDLLWVSPKSGGAVCRS 174
+I Q EL LL+ G+ L +CV Q+ P+ G +
Sbjct: 125 SNLEFESKGLEEILRQFELSLLQETGYAAALDRCVENNEAPLAQEQYVYQPERGVRPVQV 184
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFL 213
+ + D ++L + QL + L
Sbjct: 185 DDPGHWPVLTGKSLLAIAISDFSDPETLSESKQLMRFLL 223
>gi|167463436|ref|ZP_02328525.1| DNA repair protein RecO [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322383676|ref|ZP_08057427.1| RecO-like protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321151888|gb|EFX44831.1| RecO-like protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 250
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 2/189 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M ++ + IIL YGE N I+ V+T+ G+ R + + + L+ +
Sbjct: 1 MLYRIEGIILRTVDYGEGNKIITVLTQA-GKVGLMARGAKKVKSRLSAVTQLLIYGEFVF 59
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +++E + L Y + + + LPE E + L++ L L
Sbjct: 60 FKQSGMGTLNHADIIEPYHRLREDIYLSAYASYLVEMVDKMLPEGEANIYLFEQLKSALK 119
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L + G+ + CV G + S GG +C
Sbjct: 120 TMEEGKDPQIVVHIFEMAMLASAGYSPVMDVCVSCGSVDGDMMFSSLMGGILCPGCTHKD 179
Query: 180 AEKMLVLPS 188
+K+ + +
Sbjct: 180 PQKIRISEN 188
>gi|298369997|ref|ZP_06981313.1| DNA repair protein RecO [Neisseria sp. oral taxon 014 str. F0314]
gi|298281457|gb|EFI22946.1| DNA repair protein RecO [Neisseria sp. oral taxon 014 str. F0314]
Length = 250
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 68/219 (31%), Gaps = 9/219 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ A +L + E ++ LEV +R YGR R+ + + + +L + +W
Sbjct: 6 INHEPAFLLASVPWRESSLRLEVFSRSYGRVALLARSARKRQSELRGVLVPFVPMSASWY 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
GL + R +P ELYD L L
Sbjct: 66 GSGELKTLH---RAEWLGGWPQPQGRALFSGLYVNELVLRLTAREDPQPELYDALQDVLQ 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E LL ++G+ DL + + AV
Sbjct: 123 TLCRQPNHAGALRRFEWKLLDSLGYAPDLQRDGNGDPVDAGRRYLVRPEEAVMPLEQDDV 182
Query: 180 ---AEKMLVLPSFLWKEEQTIDADS-LKSAFQLTDYFLN 214
AE + + L + D+ L+ A Q+T L+
Sbjct: 183 RTAAEVAVDGGTLLQLRQGKFDSGEGLQQALQITRLLLD 221
>gi|332975247|gb|EGK12147.1| recombination protein O [Kingella kingae ATCC 23330]
Length = 242
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 15/231 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + + E ++ LEV ++ YGR R+ ++ + +L + V+W + +
Sbjct: 11 FVLSSKPWRETSLWLEVFSQNYGRVALLARSARTRGSELRGVLVPFVPISVSWFGK-EEL 69
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
R E L + + + + + +P +Y L + +
Sbjct: 70 KTIHRAEWLGGWAQ--PKNRALFSAMYANELVLKLTVREDPNPAIYQALQQLMQQIAQAT 127
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV---SPKSGGAVCRSVGLPYAEK 182
E LL +G+ D + + + A+ S + +
Sbjct: 128 SHTAALRYFEWQLLNALGYAPDTQTDQHGNAIIADAYYLLRAEHAAQAIEPSQAVLSPDS 187
Query: 183 MLVLPSFL-WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
L+ + L ++ ++ + L SA L L + + R+
Sbjct: 188 CLIQGNVLHALQQSSLQPNQLNSALAL------NRVLIQHHVPHIASRQVL 232
>gi|85712958|ref|ZP_01043997.1| Recombinational DNA repair protein, RecO, RecF pathway [Idiomarina
baltica OS145]
gi|85693196|gb|EAQ31155.1| Recombinational DNA repair protein, RecO, RecF pathway [Idiomarina
baltica OS145]
Length = 228
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 18/238 (7%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M A +L Y E +++++ + + GR + + + +LQ + V W
Sbjct: 1 MQ---PAFVLHRWDYQETSLLVDCFSLEDGRVRLLAKGAKRKTSSWKGVLQPFIPLNVQW 57
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + ++ L S G L R LP+ L++ L
Sbjct: 58 GGRGELKTLTHAEAMSHNY---ELRSDFLYSGFYINELLQRVLPQHVAVPSLFECYPQLL 114
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIG---FGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I E LL +G L + T S S
Sbjct: 115 QRLADKQPIETTLRWFEWQLLDELGSVFEWPQLEQRNELPETLYFRSYSGFSVDYHDSDC 174
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
++ + L W + + ++ ++AL I R F
Sbjct: 175 VTISRDEAIALGQSDWLN-DPLTESQRYNLKRI-----MRHALAPFIGDKPLRARALF 226
>gi|110834490|ref|YP_693349.1| DNA repair protein RecO [Alcanivorax borkumensis SK2]
gi|110647601|emb|CAL17077.1| DNA repair protein RecO [Alcanivorax borkumensis SK2]
Length = 225
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 16/227 (7%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ R + ++ +++ GR VR G+ P+L + V +
Sbjct: 11 AWLIHRRPFRNTSLTVDLFLPNLGRVGAVVRGGRK---DPLLAPFTPLWVELKPSGD--- 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
LLS G L R L +P ++ + L+
Sbjct: 65 MYSLRACEPRGNRLLLSGKALYCGFYLNELLTRLLHRDDPNPAIWPLYEQALSDLLTDIP 124
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ Q EL L+ IG+G+ L + V + + R+ P V
Sbjct: 125 LDITLRQFELAALEEIGYGIALDQDVHGQELEADARYQLNPEQGLVRTEAAP----SYVG 180
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L + K+A + + L ++ + RE F
Sbjct: 181 ADLLAICGGNWHPTARKAALNVC-----RQMLAPHLGNRPLKSRELF 222
>gi|294669325|ref|ZP_06734404.1| DNA repair protein RecO [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308735|gb|EFE49978.1| DNA repair protein RecO [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 244
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 8/212 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ LEV +R+YGR R+ + + + IL + +W
Sbjct: 14 FLLNAVPWRESSLRLEVFSRRYGRVALLARSARKRQSELRGILVPFVPIDASWYGNTELK 73
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL +++ +P +LYD L +
Sbjct: 74 TLH---RAEWLGGWSQPQGRALFSGLYLNELVWKLTAREDPHPKLYDALAEAHREICTRN 130
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +G+ DL Q ++ A P +
Sbjct: 131 NHVAALRRFEWRLLTELGYAPDLLHDADGAAVQAEKQYLLQAEQAPLLLASAPNNANGIT 190
Query: 186 LP---SFLWKEEQTIDADSLKSAFQLTDYFLN 214
+ + +SL+ A Q+T L+
Sbjct: 191 ANGSTLLQLHAGRFDNGESLQQALQITRMLLD 222
>gi|217974267|ref|YP_002359018.1| DNA repair protein RecO [Shewanella baltica OS223]
gi|304409364|ref|ZP_07390984.1| DNA repair protein RecO [Shewanella baltica OS183]
gi|307303722|ref|ZP_07583475.1| DNA repair protein RecO [Shewanella baltica BA175]
gi|217499402|gb|ACK47595.1| DNA repair protein RecO [Shewanella baltica OS223]
gi|304351882|gb|EFM16280.1| DNA repair protein RecO [Shewanella baltica OS183]
gi|306912620|gb|EFN43043.1| DNA repair protein RecO [Shewanella baltica BA175]
Length = 236
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V + A LS G+ L R L + EL+ + + L
Sbjct: 63 KT---LTQVEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHNAEELFLIYHQALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +GF L++ + + + +G +
Sbjct: 120 FCQSQLR-YIELALLRELGFMPSLSRDTQGEP------LVAEDYYQLVPELGFQFVLNSR 172
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
++ ++ + L L+ L + L+ + L R+ F+
Sbjct: 173 ARNAYQGAMLTALNDNQLTDVHFLSAKLLMRSLLKPLLGTKPLLSRQLFVSA 224
>gi|302878422|ref|YP_003846986.1| DNA repair protein RecO [Gallionella capsiferriformans ES-2]
gi|302581211|gb|ADL55222.1| DNA repair protein RecO [Gallionella capsiferriformans ES-2]
Length = 241
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 6/156 (3%)
Query: 4 QDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
QD+ A +L + E +++L+V +R+YGR R + R + +L + +R++W
Sbjct: 9 QDELAFVLHCHPFRETSLLLDVYSREYGRMAIVARGARRPRSALRGVLMSFQPLRLSWFG 68
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L + + G L L + +L+D L
Sbjct: 69 KGEVRTLH---SAEWQGGQPYLQGTALMCGFYLNELLINLLARDDAHEQLFDYYRATLYR 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ E LL+ +G+ L+L +G
Sbjct: 126 LAHETDHAATLRCFEKHLLQELGYALNLETEAASGS 161
>gi|260903905|ref|ZP_05912227.1| DNA repair protein RecO [Brevibacterium linens BL2]
Length = 242
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 15/231 (6%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D+ I+L GE + I+ V+TR +G + + + + L+ LV +
Sbjct: 3 NYRDEGIVLQGHKLGEADRIVTVLTRSHGLIRAVAKGIRRTKSRFGSRLEPFMLVDLQCH 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ + + R + +L +
Sbjct: 63 VGRSLDIVTQVELIEPFARGIGADYDAYSAASVMAETAARITEVEPQSRTHFLLLVSAIR 122
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV--- 175
++ L + G+ L C G S GGAVC +
Sbjct: 123 SLCNGEHPPRLALDAYLLRAMSVAGWAPSLLDCAQCGSPGPHRAFSASLGGAVCTTCRPS 182
Query: 176 --GLPYAEKMLVLPSFL---WKEEQTIDADSLKSAFQLTDYF----LNKYA 217
LP + + + + L W+ ++ D +L + L +
Sbjct: 183 GAALPDTDALEHMAALLSGDWERAESSDLHDQIDGSKLVSDWVSWHLERNI 233
>gi|119944414|ref|YP_942094.1| DNA repair protein RecO [Psychromonas ingrahamii 37]
gi|166221907|sp|A1SSN0|RECO_PSYIN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119863018|gb|ABM02495.1| DNA replication and repair protein RecO [Psychromonas ingrahamii
37]
Length = 233
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 11/230 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
A IL R Y E + ++++ + G+ + G+S + Q L++V++ R +
Sbjct: 8 AFILHRRPYRETSQLIDLFCQDVGKVSLVYKGGRSSTRMRRGTAQPFTLLQVSYFGRGSL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + L + L+R L C L++ L
Sbjct: 68 KTVKSFEAQTQVVP---LVGQRLFLAMYINELLYRLLQAETACDGLFECYQQTLLAIAGA 124
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
EL L++ +G+G++ ++ + +G + + + +
Sbjct: 125 VDPQIALRLFELTLIETLGYGVNFSEDIYSGELIESGYEYQYQHQAGFFAKQAIHKQHDV 184
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L ++ ++ + + + AL + + R F
Sbjct: 185 YSGQDILALAQRDFSNQNVLKSAKRFC----RQALANLLGGKPLHSRALF 230
>gi|108760610|ref|YP_631289.1| DNA repair protein RecO [Myxococcus xanthus DK 1622]
gi|119361467|sp|Q1D7T4|RECO_MYXXD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|108464490|gb|ABF89675.1| DNA repair protein RecO [Myxococcus xanthus DK 1622]
Length = 244
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 3/178 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ DDA++L YGE + ++ ++TR++G+ F + + + L+ +RV+
Sbjct: 3 RYDDDALVLSSVDYGESDRLVTLLTREHGKLTAFAAGARKSKRRFAGALEPFMRLRVHIV 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +++ A SL L ++ + EP EL+ +L +L
Sbjct: 63 ETRGSTVRLDGTDIVAGFYAAREDLSLIARALYAVELCRELTRDHEPQPELFALLESYLT 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL-WVSPKSGGAVCRSVG 176
+ EL L + G C + G GGAVC G
Sbjct: 123 RLDAKEAGPTSLLAFELSALAHAGLMPRFDSCSLCGGAPGERPRFDQAHGGAVCEPCG 180
>gi|161511021|ref|NP_980671.2| DNA repair protein RecO [Bacillus cereus ATCC 10987]
gi|61215101|sp|Q730N8|RECO_BACC1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 248
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 1 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKXPKSRLASVSQLMTHGHFLI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S + I + ++ L++ML L+
Sbjct: 61 QMGSGLGTLQQGEIISTMKEFREDIFLTAYASFIXELTDKQXXDKXHNPYLFEMLYQTLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 179
>gi|160874399|ref|YP_001553715.1| DNA repair protein RecO [Shewanella baltica OS195]
gi|160859921|gb|ABX48455.1| DNA repair protein RecO [Shewanella baltica OS195]
gi|315266634|gb|ADT93487.1| DNA repair protein RecO [Shewanella baltica OS678]
Length = 236
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L + EL+ + + L
Sbjct: 63 KT---LTQIEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHNAEELFLIYHQALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +GF L++ + + + +G +
Sbjct: 120 FCQSQLR-YIELALLRELGFMPSLSRDTQGEP------LVAEDYYQLVPELGFQFVLNSR 172
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
++ ++ + L L+ L + L+ + L R+ F+
Sbjct: 173 ARNAYQGAMLTALNDNQLTDVHFLSAKLLMRSLLKPLLGTKPLLSRQLFVSA 224
>gi|294501285|ref|YP_003564985.1| DNA repair protein RecO [Bacillus megaterium QM B1551]
gi|294351222|gb|ADE71551.1| DNA repair protein RecO [Bacillus megaterium QM B1551]
Length = 254
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 3/205 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + +
Sbjct: 1 MFKKCEGIVIRTNDYGESNKIVTIYSRELGKVGLMARGAKKPSSRLASVTQLFTYGYFFI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G + EV+ S + Y + + +P L+++L+ ++
Sbjct: 61 QAGSGMGTLHQGEVISSMRSIREDIFTTAYASYILELTDKATENNKPNPFLFELLHQTIH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV--GL 177
+ E+ +L +G L +C V + S + GG +C
Sbjct: 121 YMNEEYDAEILTFIYEMKMLNVLGLHPTLNECAVCHQGEGTFHFSIREGGFICHRCLEKD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
PY K+ + L + ID L
Sbjct: 181 PYHLKISPMTVKLLRLFYYIDLKRL 205
>gi|42739353|gb|AAS43279.1| recombination protein O [Bacillus cereus ATCC 10987]
Length = 257
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 1/179 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + + + + ++
Sbjct: 10 MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKXPKSRLASVSQLMTHGHFLI 69
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
++ LG + + S + I + ++ L++ML L+
Sbjct: 70 QMGSGLGTLQQGEIISTMKEFREDIFLTAYASFIXELTDKQXXDKXHNPYLFEMLYQTLH 129
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L +G C + D + S + GG +C
Sbjct: 130 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQ 188
>gi|40063416|gb|AAR38227.1| DNA repair protein RecO [uncultured marine bacterium 580]
Length = 236
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 74/231 (32%), Gaps = 13/231 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++I+E+ ++ +GR + + + + +LQ+ + +W
Sbjct: 14 YVLHTYPFKETSLIVEIFSKAFGRVSLVAKGARRPKSALRGMLQSFQALEASWSGIGELK 73
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + + + G L R LP+ + L+D + +
Sbjct: 74 TLHGIDWCDQYLP---MEGNSLICGFYLNELLLRLLPKEDNYESLFDFYHTTMENLSQGV 130
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
IG + EL LL +G+ + L + ++ + K++
Sbjct: 131 NIGVTLRRFELKLLLELGYEVVLKVDANANEIKADKTYYYEAEQGALEKFRTEKSIKVIG 190
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL--QHNIIHCHLLRENFLG 234
A + + L FL Y L + ++ FL
Sbjct: 191 QTLIDMGNNNFDSATTELQSKNLMR-FLINYYLGDKPLN-----SKQLFLN 235
>gi|161511220|ref|NP_826805.2| DNA repair protein RecO [Streptomyces avermitilis MA-4680]
gi|119370512|sp|Q82BS6|RECO_STRAW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 248
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 83/211 (39%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGGAIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ + C G+ + S +GG+
Sbjct: 124 LVGGLRTLARGEHEPHLV--LDAFLLRSLAVNGYAPSFSNCAKCGMPGPNRFFSVAAGGS 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D ++
Sbjct: 182 VCVDCRVPGSVVPSAQALVLLGALLTGDWET 212
>gi|29609289|dbj|BAC73340.1| putative DNA recombination and repair protein [Streptomyces
avermitilis MA-4680]
Length = 251
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 83/211 (39%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 7 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 66
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 67 RGSELIGRGLPLCTQSETIAPYGGAIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 126
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ + C G+ + S +GG+
Sbjct: 127 LVGGLRTLARGEHEPHLV--LDAFLLRSLAVNGYAPSFSNCAKCGMPGPNRFFSVAAGGS 184
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D ++
Sbjct: 185 VCVDCRVPGSVVPSAQALVLLGALLTGDWET 215
>gi|261380742|ref|ZP_05985315.1| DNA repair protein RecO [Neisseria subflava NJ9703]
gi|284796460|gb|EFC51807.1| DNA repair protein RecO [Neisseria subflava NJ9703]
Length = 247
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASAPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD+L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDVLAKTMKTICCEA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL AV +
Sbjct: 130 NHIATLRRFEWSLLTRLGFAPDLFHDGNGNEINGEETYWLTPEEAVVPLAEADRFHALNK 189
Query: 186 LPSFL------WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ L +E + +SL A ++T ++ L I R+
Sbjct: 190 GVAVLGATLIDLREGSFVHQESLGQALKVTRLLIDN--LLPEGI---KSRQVL 237
>gi|127511989|ref|YP_001093186.1| DNA repair protein RecO [Shewanella loihica PV-4]
gi|126637284|gb|ABO22927.1| DNA repair protein RecO [Shewanella loihica PV-4]
Length = 231
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 13/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + R +
Sbjct: 3 RGYVLHTRPYRESSVLVNLLVDGLGRVDAVARLGSGKTSIKSILQPFQPLLFQLSGRSSL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ A LS + G L R L + + + L
Sbjct: 63 KSLYQVEA---ASPAVPLSGNDSFAGFYLNELLVRCLSVEHGAEQFFFTYHKTLMAMAAA 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ EL LLK +G L + + + S ++G
Sbjct: 120 FSEAQLRQ-FELSLLKELGVMPSLNLDIEGSPIETDFYYRLLSEEGFSTALGPKPNHFSG 178
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLG 234
+ L EE + K A L + L + R FL
Sbjct: 179 EMLRAL--EEDRLTEADFKQAK-----LLMRQLLSPLLGDKPLKSRALFLK 222
>gi|302545505|ref|ZP_07297847.1| DNA repair protein RecO [Streptomyces hygroscopicus ATCC 53653]
gi|302463123|gb|EFL26216.1| DNA repair protein RecO [Streptomyces himastatinicus ATCC 53653]
Length = 248
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRNHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R + +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGGELIGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GGA
Sbjct: 124 LVGGLRTLASGEHEPHL--ILDAFLLRSLAVNGYAPSFDDCAKCGMPGPNRFFSVGAGGA 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGECRVPGS 191
>gi|295706632|ref|YP_003599707.1| DNA repair protein RecO [Bacillus megaterium DSM 319]
gi|294804291|gb|ADF41357.1| DNA repair protein RecO [Bacillus megaterium DSM 319]
Length = 254
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 72/205 (35%), Gaps = 3/205 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + + I++ YGE N I+ + +R+ G+ R + + +
Sbjct: 1 MFKKCEGIVIRTNDYGESNKIVTIYSRELGKVGLMARGAKKPSSRLASVTQLFTYGYFFI 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G + EV+ S + Y + + +P L+++L ++
Sbjct: 61 QAGSGMGTLHQGEVISSMRSIREDIFTTAYASYILELTDKATENNKPNPFLFELLYQTIH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV--GL 177
+ E+ +L +G L +C V + S + GG +C
Sbjct: 121 YMNEEYDAEILTFIYEMKMLNVLGLHPTLNECAVCHRGEGTFHFSIREGGFICHRCLEKD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
PY K+ + L + ID L
Sbjct: 181 PYHLKISPMTVKLLRLFYYIDLKRL 205
>gi|237746714|ref|ZP_04577194.1| RecO DNA repair protein [Oxalobacter formigenes HOxBLS]
gi|229378065|gb|EEO28156.1| RecO DNA repair protein [Oxalobacter formigenes HOxBLS]
Length = 277
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 12/234 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+L Y E ++++EV TR YGR + + R++ +LQ + + W +
Sbjct: 49 PGFVLHSYVYRESSLVVEVFTRDYGRVALVAKGAKRPTSRLRGVLQTFQPLSIGWSGKSE 108
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L +S LYG L + L +P L++ L
Sbjct: 109 LRT---LTSAEWVGGMIPLENSALLYGFYLNELLLKLLAREDPHQGLFEHYVRALARLAT 165
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ EL LLK G D + + + + A +
Sbjct: 166 AESAQTVLRIFELALLKETGVASDFSVNIQDRSPVEPDGIYVVDPESGPRPATLGDTAPR 225
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ E D + + L ++ L H++ L R+ +
Sbjct: 226 VSGKTLLDMVREDYADPQTQLQSKH-----LMRFLLAHHLDGVPLQTRKILIDL 274
>gi|254429213|ref|ZP_05042920.1| DNA repair protein RecO [Alcanivorax sp. DG881]
gi|196195382|gb|EDX90341.1| DNA repair protein RecO [Alcanivorax sp. DG881]
Length = 225
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 16/230 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ R + ++ +++ GR VR G+ P+L + V +
Sbjct: 11 AWLIHRRPFRNTSLTVDLFLPALGRIGAVVRGGRK---DPLLAPFTPLWVALKPSGE--- 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+L+ G L R L +P ++ + L+ + +
Sbjct: 65 MYSLRACEPRGNRLMLTGKALYCGFYLNELLTRLLHRDDPNPSVWPLYEQALSDLQTQTP 124
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
Q EL +L+ IG+G+ L + V +
Sbjct: 125 FDITLRQFELAVLEQIGYGIALDQDVHGHGLDPEALYQLNPEQGL----AKTETGGGYAG 180
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
L + S ++A L ++ L ++ + RE F K
Sbjct: 181 ADLLAIAQGDWHPASRRAALSLC-----RHLLAPHLGNRPLKSRELFREK 225
>gi|170718281|ref|YP_001785298.1| DNA repair protein RecO [Haemophilus somnus 2336]
gi|168826410|gb|ACA31781.1| DNA repair protein RecO [Haemophilus somnus 2336]
Length = 217
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 10/221 (4%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESH 77
+++E+ T ++GR + ++ R + +LQ + +NW R +
Sbjct: 1 MLVELFTEEHGRLTVLAKGARAKRSAWKSLLQPFTPLLLNWSGRGELK---ILIKAEAIS 57
Query: 78 CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK-IPSVIGKIFVQIEL 136
L ++ G + R L +L+ L P I K E
Sbjct: 58 LTLPLQTTALYSGFYVNELIARLLAPETAYPDLFQYYLQCLTALASSPQEIEKSLRTFEF 117
Query: 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQT 196
LL+ +G+ +D C +G D + + ++ +
Sbjct: 118 QLLEVLGYAVDFCHCAGSGKPVDEKMTYRYREEKGFIASLIKDNLTFYGRELLAFERREF 177
Query: 197 IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+D L++A + + L Y RE F +L
Sbjct: 178 VDKTVLQAAKRFSRIALKYYL---GNKPL-KSRELFTQNIL 214
>gi|315645985|ref|ZP_07899106.1| DNA repair protein RecO [Paenibacillus vortex V453]
gi|315278746|gb|EFU42060.1| DNA repair protein RecO [Paenibacillus vortex V453]
Length = 262
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 2/159 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ + T++ G+ VR + + + + Q +
Sbjct: 12 MLYRAEGIVIRSMDYGEGNKIITLCTKESGKVGVLVRGAKKVKSRHAALTQLFTYGEYVF 71
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
E++ESH Y + L R L + E + L +
Sbjct: 72 FRNGTGLGNLNAGEIMESHHRLREDLVKAAYASYACELLDRVLQDEETGAFWFHQLKACM 131
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ I E+ +L+ G+G +L C+ T
Sbjct: 132 EALQEDKDPQIIINLYEMKILQAAGYGPELDVCISCNQT 170
>gi|311031642|ref|ZP_07709732.1| DNA repair protein RecO [Bacillus sp. m3-13]
Length = 258
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 3/207 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I++ +YGE N I+ + +++ G+ R + + +
Sbjct: 1 MLHKCEGIVIRTNAYGENNKIVTIYSKELGKVGVMARGANKPSSRFTAVSQLFSHATFVF 60
Query: 61 RLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + LG + + +S + L Y + + R E + LYD+L L+
Sbjct: 61 QRSTGLGSLQQGEIMDSMRSIREDIFLTAYASFIVELMDRTTDEGKRNPALYDLLYQVLH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV--GL 177
+ E+ + IG +L +C G T+ S K GG +C
Sbjct: 121 YINDGFDAEILTFIFEMKMCDVIGITPELNRCASCGATEGSFAFSIKEGGFLCNRCFHKD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKS 204
PY K+ L + D + + +
Sbjct: 181 PYLIKVSPATLRLLRTFYYYDLNRIGN 207
>gi|88608141|ref|YP_506346.1| putative DNA repair protein RecO [Neorickettsia sennetsu str.
Miyayama]
gi|88600310|gb|ABD45778.1| putative DNA repair protein RecO [Neorickettsia sennetsu str.
Miyayama]
Length = 237
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 8/206 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++ I+L + E + + T+ YG G + + GN+V W
Sbjct: 1 MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLC------SRKTTIDVGNVVYCRWSG 54
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
RL LG FR EV E L + L L ++ L + LPE EP E+Y L
Sbjct: 55 RLEVQLGYFRVEVKEIISPFLFTDYKKLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQ 114
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K ++ ++L +L+ +GF LDL++C VTG T+DL ++SPK+G AV ++VG
Sbjct: 115 AFKSNTLCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYISPKTGRAVTKAVGEA 174
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKS 204
Y +K+L+LP L+K + + +
Sbjct: 175 YKDKLLLLPPSLYKIANGLSIEEISQ 200
>gi|226311655|ref|YP_002771549.1| DNA repair protein [Brevibacillus brevis NBRC 100599]
gi|254790514|sp|C0ZB86|RECO_BREBN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226094603|dbj|BAH43045.1| DNA repair protein [Brevibacillus brevis NBRC 100599]
Length = 257
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I++ YGE + ++ + TR+ G+ R + + + + +
Sbjct: 1 MLVKWEGIVIRSVDYGESSKVVTMFTRENGKLGVMARGAKKTKSRLAAVSQLFSHSYYLC 60
Query: 61 RLAQNLGEFRF---EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ G ++L+S S + Y L R EREP L+ +L
Sbjct: 61 KAGPGTGMPDLSQGDMLDSFRDMRQSLTATAYAAYIAELLDRLTQEREPNPYLFQLLLHT 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ E +L G LT C G ++ +S GG +C
Sbjct: 121 FRHLDEGRDAEILCRIFETKMLIVAGISPQLTACANCGEQREPYAISVGQGGLLCPVC 178
>gi|303257005|ref|ZP_07343019.1| DNA repair protein RecO [Burkholderiales bacterium 1_1_47]
gi|302860496|gb|EFL83573.1| DNA repair protein RecO [Burkholderiales bacterium 1_1_47]
Length = 235
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
Q A +L + E ++I+E TR YGR R + + + +L + V++ +
Sbjct: 14 QQPAFVLHTYPWRETSLIVEFFTRDYGRIPLVARGAKRPMSQYRGLLNPFCPLAVSYSGK 73
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
E + ++ + + L R LP EP L+ + L
Sbjct: 74 GEVKNLTRC----EWYGTIPMNEKVLMSAFYINELLVRLLPRGEPEPSLFTIYYDTLKKL 129
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGL 146
+ E LK +G+ L
Sbjct: 130 ALEKDYLVPLRYFERDFLKVLGYAL 154
>gi|329924075|ref|ZP_08279338.1| DNA repair protein RecO [Paenibacillus sp. HGF5]
gi|328940914|gb|EGG37222.1| DNA repair protein RecO [Paenibacillus sp. HGF5]
Length = 251
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 2/157 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ + T++ G+ VR + + + + Q +
Sbjct: 1 MLYRAEGIVIRSMDYGEGNKIITLCTKESGKVGVLVRGAKKVKSRHAALTQLFTYGEYVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
E++ESH Y + L R L + E + L L
Sbjct: 61 FRNGTGLGNLNAGEIMESHHGLREDLVKAAYASYACELLDRVLQDEETGAFWFHQLKACL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I E+ +L+ G+G +L C+
Sbjct: 121 EALQEDKDPQIIINLYEMKILQAAGYGPELDVCISCN 157
>gi|311693677|gb|ADP96550.1| DNA repair protein RecO [marine bacterium HP15]
Length = 242
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 5/151 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
Q+ A +L R + E ++++++ + +GR R S + + LQ + V+W
Sbjct: 5 ELQEPAYVLHRRPWRETSLMVDLFSLNHGRMTVIARGANSAKSPLKAQLQPFQPLIVDWA 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + GL L R LP +P L+ +
Sbjct: 65 GRGDLKTLTQVDVRA---GPTITRTVSLYSGLYLNELLQRILPAADPHPTLFAAYIDAIG 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
+ + + EL +G+ +
Sbjct: 122 QLSDTRDVEPVLRRFELAFASALGYDFAWDR 152
>gi|222054844|ref|YP_002537206.1| DNA repair protein RecO [Geobacter sp. FRC-32]
gi|221564133|gb|ACM20105.1| DNA repair protein RecO [Geobacter sp. FRC-32]
Length = 244
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLAQN 65
++LGV Y + + I+ + T + G+ G RN + R + L+ +R+ +
Sbjct: 9 VVLGVLDYADADKIVTLFTLENGKVKGLARNAKKSRKRFGGALEPFARLRLQLTLK-EGL 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+V+ S + + + + E E L+ +L +L +
Sbjct: 68 STLNGADVINVFPHIRADLSKIANAAYACELVEQLVGEGEQNPRLFRLLTAYLEHLNLTD 127
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
E LLK +G+ +L +C
Sbjct: 128 HAPSDRRFFEANLLKVLGYQPELARCASCD 157
>gi|261405618|ref|YP_003241859.1| DNA repair protein RecO [Paenibacillus sp. Y412MC10]
gi|261282081|gb|ACX64052.1| DNA repair protein RecO [Paenibacillus sp. Y412MC10]
Length = 251
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 2/157 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ + T++ G+ VR + + + + Q +
Sbjct: 1 MLYRAEGIVIRSMDYGEGNKIITLCTKESGKVGVLVRGAKKVKSRHAALTQLFTYGEYVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
E++ESH Y + L R L + E + L L
Sbjct: 61 FRNGTGLGNLNAGEIMESHHGLREDLVKAAYASYACELLDRVLQDEETGAFWFHQLKACL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I E+ +L+ G+G +L C+
Sbjct: 121 EALQEDKDPQIIINLYEMKILQAAGYGPELDVCISCN 157
>gi|118594603|ref|ZP_01551950.1| DNA repair protein RecO [Methylophilales bacterium HTCC2181]
gi|118440381|gb|EAV47008.1| DNA repair protein RecO [Methylophilales bacterium HTCC2181]
Length = 237
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 5/211 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
IL + E ++I+E++++++GR + + R + +L ++ W
Sbjct: 13 YILHTYPFKETSLIVEMLSKEFGRIAVAAKGARRPRSSLRGMLLPLQPLQATWSGLNELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ S + + G + R LP+ +P LYD + +
Sbjct: 73 TLH---SIEWSDQFLSIEGDALICGFYLNELMMRLLPKDDPHPALYDHYHQAVLALSKNK 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + EL LL+ +G+ + L + + + GL + ++
Sbjct: 130 GLSVTLRRFELRLLQELGYQVPLNNDIHGRIIDFDKTYIYHADSGPLEGKGLEGSVEISG 189
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
+ D + K + QL Y +N Y
Sbjct: 190 KTLIDMAADNYQDPLTEKQSKQLMRYLINHY 220
>gi|114320505|ref|YP_742188.1| DNA repair protein RecO [Alkalilimnicola ehrlichii MLHE-1]
gi|119361445|sp|Q0A8Y9|RECO_ALHEH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|114226899|gb|ABI56698.1| DNA replication and repair protein RecO [Alkalilimnicola ehrlichii
MLHE-1]
Length = 247
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 8/180 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-SHRMQPILQAGNLVRVNWRSRLAQ 64
A +L R + E ++I+E+ +R +GR R G+ S R + +L+ + V +W+ R
Sbjct: 10 PAWVLHRRPWSESSLIVELFSRDFGRIGAVARGGRNSRRWRGLLEPFSPVLASWQGRGEL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
G L R L +P EL+ + LN
Sbjct: 70 RSLVAAEPDGARPALAGA---ALASGFYLNELLLRLLRRDDPHPELHPLYGDTLNRL--- 123
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
E LL+ +G+GL L + + R +P A + L
Sbjct: 124 -PDEAALRGFECRLLEALGYGLLLLEDMGGEPVHGEAHYRYHLEHGPERLAAVPEAGEGL 182
>gi|330999957|ref|ZP_08323655.1| DNA repair protein RecO [Parasutterella excrementihominis YIT
11859]
gi|329573364|gb|EGG54976.1| DNA repair protein RecO [Parasutterella excrementihominis YIT
11859]
Length = 234
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
Q A +L + E ++I+E TR YGR R + + + +L + V++ +
Sbjct: 13 QQPAFVLHTYPWRETSLIVEFFTRDYGRIPLVARGAKRPMSQYRGLLNPFCPLAVSYSGK 72
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
E + ++ + + L R LP EP L+ + L
Sbjct: 73 GEVKNLTRC----EWYGTIPMNEKVLMSAFYINELLVRLLPRGEPEPSLFTIYYDTLKKL 128
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGL 146
+ E LK +G+ L
Sbjct: 129 ALEKDYLVPLRYFERDFLKVLGYAL 153
>gi|297160638|gb|ADI10350.1| DNA repair protein RecO [Streptomyces bingchenggensis BCW-1]
Length = 249
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/212 (16%), Positives = 78/212 (36%), Gaps = 15/212 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 63
Query: 61 RLAQN------LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YD 112
R + E + + + +++ +++ + E + Y
Sbjct: 64 RGGGELVGRGLPLCTQSETIAPYGSAIVTDYARYTAGTAMLETAERFTDHEGEPAMQQYL 123
Query: 113 MLNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LLVGALRTLASGEHEPHL--ILDAFLLRSLAVNGYAPSFDNCAKCGMPGPNRFFSVGAGG 181
Query: 170 AVCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+C +P + L T D ++
Sbjct: 182 VICGECRVPGSVVPSAEALMLLGALLTGDWET 213
>gi|197119173|ref|YP_002139600.1| DNA repair protein RecO [Geobacter bemidjiensis Bem]
gi|197088533|gb|ACH39804.1| DNA repair protein RecO [Geobacter bemidjiensis Bem]
Length = 217
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 1/146 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +AI+L +GE + I+ T + G+ G R + + + + + +
Sbjct: 10 EAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFAHLKLQLQQG 69
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL-PEREPCLELYDMLNIFLNCHK 122
+L + S + + + L L P+ EP L+ +L +L
Sbjct: 70 NSLATLSSADIVSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRLLYCYLERLN 129
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDL 148
+ LLK +G+ DL
Sbjct: 130 EAPPSPSDRRFFAVNLLKILGYQPDL 155
>gi|268315979|ref|YP_003289698.1| DNA repair protein RecO [Rhodothermus marinus DSM 4252]
gi|262333513|gb|ACY47310.1| DNA repair protein RecO [Rhodothermus marinus DSM 4252]
Length = 254
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 4/154 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M + +AI+L YGE ++I + TR GR + + R LQ + ++V +
Sbjct: 1 MIVRTEAIVLRTLPYGETSLIASLFTRAKGRLSMMAKGARLPGSRFGGTLQPPSCLQVVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R + L + +L L+ + LP EP E ++
Sbjct: 61 YYRPTRELQTLSESSFAQYLPELGRDLEKLTLSLRMVELAHALLPPEEPMPEFFETFWQV 120
Query: 118 LNCHKIPSVIGK-IFVQIELMLLKNIGFGLDLTK 150
L + +L L +GF + +
Sbjct: 121 LARLDATPTRAWNLLPWFQLRLAAALGFAPRIER 154
>gi|120599800|ref|YP_964374.1| DNA repair protein RecO [Shewanella sp. W3-18-1]
gi|120559893|gb|ABM25820.1| DNA repair protein RecO [Shewanella sp. W3-18-1]
gi|319425563|gb|ADV53637.1| DNA repair protein RecO [Shewanella putrefaciens 200]
Length = 236
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L + L+ + + L
Sbjct: 63 KT---LTQIEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHHAEALFLIYHRALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +G L++ + + A
Sbjct: 120 FCQSQLR-YIELALLQELGAMPSLSRDTQGEPLVPEDYYQLVPELGFQFVLN-SRARNAY 177
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + + SA +L L + L + L R+ F+
Sbjct: 178 QGAMLMALNDNQLTEAQFLSA-KL----LMRSLLTPLLGTKPLLSRQLFVSS 224
>gi|257093155|ref|YP_003166796.1| DNA repair protein RecO [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257045679|gb|ACV34867.1| DNA repair protein RecO [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 238
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 70/231 (30%), Gaps = 13/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L Y E ++I++V +R +GR R + R + +L A + + W R
Sbjct: 11 PAFVLHAYPYSETSLIIDVFSRDFGRVALLARGARRPRSVLRGVLLAFQPLELAWAGRGE 70
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ LL+ G L LP + L+ + L
Sbjct: 71 VQTLM---KAEWQGGQPLLAGKSLFCGYYLNELLMNLLPREDAHARLFAVYAETLRRFAD 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA-VCRSVGLPYAEK 182
+ + E LL+ +G+GL L + + + V A
Sbjct: 128 GAQEADLRC-FERALLQELGYGLLLETDAEGVAVEADGDYAYEIERGPVRLQRPGGSALS 186
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLLRENF 232
+ E D SL A Q L + + H R F
Sbjct: 187 VSGRTLIDLAREDFSDPRSLSEAKQ-----LMRTLIGHYTGGRSLASRRIF 232
>gi|167037773|ref|YP_001665351.1| DNA repair protein RecO [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256751967|ref|ZP_05492837.1| DNA repair protein RecO [Thermoanaerobacter ethanolicus CCSD1]
gi|320116188|ref|YP_004186347.1| DNA repair protein RecO [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|238687665|sp|B0KA52|RECO_THEP3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166856607|gb|ABY95015.1| DNA repair protein RecO [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256749172|gb|EEU62206.1| DNA repair protein RecO [Thermoanaerobacter ethanolicus CCSD1]
gi|319929279|gb|ADV79964.1| DNA repair protein RecO [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 248
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L GE + I + T+ YG+ + + + + + + N+
Sbjct: 5 KTEAIVLKNNLIGETDKIATLFTKSYGKLQAVAKGARRSKSRFVNAIRPFIVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++E+H F + + L E + LY L L
Sbjct: 65 KNYYYIDQWELIEAHRNIEKDLVKFSVASYIAETINKILEENQKSERLYLFLKHSLKAVD 124
Query: 123 IPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L CVV G ++L + S GGAVC +
Sbjct: 125 ELQIDPLIFISSYNLKLVSLLGYMPQLDNCVVCGKRENLKYFSNSCGGAVCINCKNK 181
>gi|325266693|ref|ZP_08133370.1| recombination protein O [Kingella denitrificans ATCC 33394]
gi|324982136|gb|EGC17771.1| recombination protein O [Kingella denitrificans ATCC 33394]
Length = 252
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 11/220 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L + E ++ LEV +R YGR R+ ++ + IL + ++W +
Sbjct: 10 PAFLLASSPWRENSLRLEVFSRDYGRVALLARSARARGSELRGILMPFVPLSISWFGKEE 69
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L L + L + +P LY L +
Sbjct: 70 LKTLH---RAEWVGGWQQPKNLLLFSALYANEILLKLTAREDPHPNLYHALAQLMQHFGT 126
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
E LL +G+ + + A R +
Sbjct: 127 GQHHLAPLRHFEWQLLHELGYAPSAQHDRQQQPIETHANYLMRPETAAERMAEAESSLHS 186
Query: 184 LVLPSFLWK------EEQTIDADSLKSAFQLTDYFLNKYA 217
+ + E ++ L++A L F+ Y
Sbjct: 187 VPNSCIISGDVLQALETSSLQPHQLQAALALNRLFIQHYL 226
>gi|225024982|ref|ZP_03714174.1| hypothetical protein EIKCOROL_01871 [Eikenella corrodens ATCC
23834]
gi|224942212|gb|EEG23421.1| hypothetical protein EIKCOROL_01871 [Eikenella corrodens ATCC
23834]
Length = 246
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 13/219 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L + E +++ E+ +R YGR R+ + + + +L V+V W +
Sbjct: 11 PAFLLSATPWRETSLLAELFSRDYGRVAVVARSARKRQSELRGVLVPFVPVQVAWYGKEE 70
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L GL + + +P LY+ L +
Sbjct: 71 LKTLH---RAEWLGGWPQPQGRALLSGLYVNELVQKLTAREDPQPALYEALRQVMRTLCT 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL G+ DL K + + AV
Sbjct: 128 EPNHAAVLRRFEWTLLTLAGYAPDLQKDSAGCPVEADRQYWLQPEHAVLPLEQRHSLTPA 187
Query: 184 LVLP--------SFLWKEEQTIDADSLKSAFQLTDYFLN 214
V P + + D +L+ A ++T L+
Sbjct: 188 EVQPGVAVDGDVLIQLQNGEFTDTSALQQARRITRLLLD 226
>gi|213420940|ref|ZP_03354006.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 222
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 12/216 (5%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
+L+V T + GR + +S R + LQ + + + R
Sbjct: 1 MLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLR---SAEAVSL 57
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELM 137
A LS GL L R L EL+ + + + EL
Sbjct: 58 ALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL ++G+G++ T C +G D + + + +
Sbjct: 118 LLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFP 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
D D+L++A + T + AL+ + RE F
Sbjct: 178 DVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 208
>gi|319943507|ref|ZP_08017789.1| recombination protein O [Lautropia mirabilis ATCC 51599]
gi|319743322|gb|EFV95727.1| recombination protein O [Lautropia mirabilis ATCC 51599]
Length = 234
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 5/177 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ +L +Y E ++I+++ R+ GR + + +P+L + R
Sbjct: 7 DEPGFVLHSHAYRETSLIVDLFLRERGRVSAVAKGARRPTSALRPVLLQFQPIEFRLSGR 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L+ + R L +P +L+D L
Sbjct: 67 NELRT---LTRAEWQGGMAVPAGRALLFAFYLNELVMRLLAREDPHPQLFDAYADALYQL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+I + E +LL IG+ DL + G P
Sbjct: 124 GEQGADERILRRFEWLLLTEIGYAPDLACDHRGLPLEPQRNYRMDGGQWFATQGEDP 180
>gi|161502269|ref|YP_001569381.1| hypothetical protein SARI_00299 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863616|gb|ABX20239.1| hypothetical protein SARI_00299 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 222
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 12/216 (5%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
+L+V T + GR + +S R + LQ + + + R
Sbjct: 1 MLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLR---SAEAVSL 57
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELM 137
A L+ GL L R L EL+ + + + + EL
Sbjct: 58 ALPLNGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPVLRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL ++G+G++ T C +G D + + + +
Sbjct: 118 LLGHLGYGVNFTHCAGSGEQVDDTMTYRYREEKGFIASVVIDNNTFTGRHLKALEAREFP 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
D D+L++A + T + AL+ + RE F
Sbjct: 178 DVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 208
>gi|302551286|ref|ZP_07303628.1| DNA repair protein RecO [Streptomyces viridochromogenes DSM 40736]
gi|302468904|gb|EFL31997.1| DNA repair protein RecO [Streptomyces viridochromogenes DSM 40736]
Length = 248
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 82/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + ++S ++ + E + Y +
Sbjct: 64 KGSELVGRGLPLCTQSETIAPYGGGIVSDYARYTAGTVMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ T C G+ + S SGG+
Sbjct: 124 LVGGLRTLARGEHAPHLV--LDAFLLRSLAVNGYAPSFTDCAKCGMPGPNRFFSVASGGS 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D ++
Sbjct: 182 VCVDCRVPGSVVPSPQALELLGALLTGDWET 212
>gi|322420171|ref|YP_004199394.1| DNA repair protein RecO [Geobacter sp. M18]
gi|320126558|gb|ADW14118.1| DNA repair protein RecO [Geobacter sp. M18]
Length = 212
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 7/207 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ + I+L + +GE + I+ + T + G+ G R + R + L+ +++
Sbjct: 5 EAEGIVLRLTDFGEADRIVTMFTLEQGKLQGVARGAKRSRKRFAGALEPFAHLKLQLHL- 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+++ + + + R PE EP L+ +L +L
Sbjct: 64 GTGLATLSSADIVGIFPGIRADLTKIGCAAYACELVERLTPEDEPSPRLFRLLYCYLERL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ LLK +G+ DL ++ T LL + ++G + + E
Sbjct: 124 NEAPASPSDRRFFAVNLLKILGYQPDLQLRAISEETATLLARAMRTGRF----GAIVFPE 179
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQL 208
+L L + D +
Sbjct: 180 PLLSEADLLLNPAIDLHLDRELKSLAF 206
>gi|152999780|ref|YP_001365461.1| DNA repair protein RecO [Shewanella baltica OS185]
gi|151364398|gb|ABS07398.1| DNA repair protein RecO [Shewanella baltica OS185]
Length = 236
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVSRTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V + A LS G+ L R L + EL+ + + L
Sbjct: 63 KT---LTQVEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHNAEELFLIYHQALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +GF L++ + + + +G +
Sbjct: 120 FCQSQLR-YIELALLRELGFMPSLSRDTQGEP------LVAEDYYQLVPELGFQFVLNSR 172
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
++ ++ + L L+ L + L+ + L R+ F+
Sbjct: 173 ARNAYQGAMLTALNDNQLTDVHFLSAKLLMRSLLKPLLGTKPLLSRQLFVSA 224
>gi|157144499|ref|YP_001451818.1| hypothetical protein CKO_00217 [Citrobacter koseri ATCC BAA-895]
gi|157081704|gb|ABV11382.1| hypothetical protein CKO_00217 [Citrobacter koseri ATCC BAA-895]
Length = 225
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/216 (18%), Positives = 69/216 (31%), Gaps = 12/216 (5%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
+L+V T + GR + +S R + LQ + + + R
Sbjct: 1 MLDVFTEESGRVRLVAKGARSKRSSLKGALQPFTPLLLRFGGRGEVKTLR---SAEAVSL 57
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELM 137
A LS GL L R L EL+ + + + EL
Sbjct: 58 ALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQSLAGATGSPEPALRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL ++G+G+D C +G T D + + +
Sbjct: 118 LLGHLGYGVDFLHCAGSGETVDDTMTYRYREEKGFMASVVIDNSTFTGRHLKALDAREFP 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
D D+L++A + T + AL+ + RE F
Sbjct: 178 DVDTLRAAKRFT-----RMALKPYLGGKPLKSRELF 208
>gi|319638209|ref|ZP_07992972.1| DNA repair protein [Neisseria mucosa C102]
gi|317400482|gb|EFV81140.1| DNA repair protein [Neisseria mucosa C102]
Length = 247
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 66/233 (28%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASAPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD+L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDVLAETMKTICCEA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL AV +
Sbjct: 130 NHIAALRRFEWTLLTRLGFAPDLFHDGNGNEINGEETYWLTPEEAVVPLAEADRFHALNK 189
Query: 186 ------LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+E + +SL A ++T ++ L I R+
Sbjct: 190 GVAVSGATLIDLREGSFVHQESLGQALKVTRLLIDN--LLPEGI---KSRQVL 237
>gi|253700038|ref|YP_003021227.1| DNA repair protein RecO [Geobacter sp. M21]
gi|251774888|gb|ACT17469.1| DNA repair protein RecO [Geobacter sp. M21]
Length = 217
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
+AI+L + +GE + I+ T + G+ G R + + + L+A +++ +
Sbjct: 12 EAIVLRLTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEAFAHLKLQLHLGNS 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+++ + + R P+ EP L+ +L +L
Sbjct: 72 LPT-LSSADIVSIFPGIRSDLVKIGSAAYACELVERLTPDEEPAPRLFRLLYCYLERLDQ 130
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLT 149
+ LLK +G+ DL
Sbjct: 131 DPPSASDRRFFAVNLLKILGYQPDLK 156
>gi|119713603|gb|ABL97654.1| DNA repair protein RecO [uncultured marine bacterium EB0_39H12]
Length = 241
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 74/211 (35%), Gaps = 9/211 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+ A +L R Y E ++I+E T+ +GR + + + + +L + + V+ +
Sbjct: 10 EPAFVLHTRPYQETSLIVEFFTQSFGRINAVAKGAKRPKSPLRSVLTPVSRLSVSLSGKS 69
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ L + + + + + +P ++ FL
Sbjct: 70 ELKNLSSAEILDHYP---LSDGASLNSIIYINELITKATEKEDPHKIIFLKYQNFLENIS 126
Query: 123 IPSVIGKIFVQ---IELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLP 178
+ + + + E+ LL+ +G+G+DLT+ T ++
Sbjct: 127 KNNNLDNLELLLRDFEMTLLQEMGYGIDLTRDAETNNKLKEDTNYRFDPNIGFTFITAGN 186
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
+ + + E + S+++A ++
Sbjct: 187 RPKISFLGKDIIDFSEGKFEKKSVRAASKII 217
>gi|146292264|ref|YP_001182688.1| DNA repair protein RecO [Shewanella putrefaciens CN-32]
gi|145563954|gb|ABP74889.1| DNA repair protein RecO [Shewanella putrefaciens CN-32]
Length = 236
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 77/232 (33%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E ++++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A L G+ L R L + L+ + + L
Sbjct: 63 KT---LTQIEAAAPAVPLFGQSLFAGMYINELLVRTLSVQHHAEALFLIYHRALVGLAAK 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ IEL LL+ +G L++ + + P + +G +
Sbjct: 120 FCQSQLR-YIELALLQELGAMPSLSRDTLGEP------LVPDDYYQLVPELGFQFVLNSR 172
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
++ ++ + L A L+ L + L+ + L R+ F+
Sbjct: 173 ARNAYQGAMLMALNDNQLTEAQFLSAKLLMRSLLKPLLGTKPLLSRQLFVNS 224
>gi|326389847|ref|ZP_08211411.1| DNA repair protein RecO [Thermoanaerobacter ethanolicus JW 200]
gi|325994115|gb|EGD52543.1| DNA repair protein RecO [Thermoanaerobacter ethanolicus JW 200]
Length = 248
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L GE + I + T+ YG+ + + + + + V N+
Sbjct: 5 KTEAIVLKNNLIGETDKIATLFTKSYGKLQAVAKGARRSKSRFVNAIRPFVVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++E+H + F + + L E + LY L L
Sbjct: 65 QNYYYIDQWELIEAHKNIEKDLAKFSVASYIAETINKILEENQKSERLYLFLKHSLKAVD 124
Query: 123 IPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L CVV G ++L + S GGAVC +
Sbjct: 125 ELQIDPLIFISSYNLKLVSLLGYMPQLDNCVVCGKRENLKYFSNSCGGAVCINCKNK 181
>gi|225075848|ref|ZP_03719047.1| hypothetical protein NEIFLAOT_00864 [Neisseria flavescens
NRL30031/H210]
gi|224952794|gb|EEG34003.1| hypothetical protein NEIFLAOT_00864 [Neisseria flavescens
NRL30031/H210]
Length = 247
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + + ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASAPWRDSSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD+L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDVLAETMKTICCEA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL AV +
Sbjct: 130 NHIAALRRFEWSLLTRLGFAPDLFHDGNGNEINGEETYWLTPEEAVVPLAEADRFHALNK 189
Query: 186 LPSFL------WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ L +E + +SL A ++T ++ L I R+
Sbjct: 190 GVAVLGATLIDLREGSFVHQESLGQALKVTRLLIDN--LLPEGI---KSRQVL 237
>gi|269836984|ref|YP_003319212.1| DNA repair protein RecO [Sphaerobacter thermophilus DSM 20745]
gi|269786247|gb|ACZ38390.1| DNA repair protein RecO [Sphaerobacter thermophilus DSM 20745]
Length = 276
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 3/157 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++ +A++L R GE + IL + T ++G+ + + ++ L+ + +
Sbjct: 33 YRTEAVVLRRRDLGEADRILTLFTARHGKLRVVAKGVRRPQSKLAGHLEPCARTSLLL-A 91
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++++ + A + Y L E +P YD L
Sbjct: 92 QGRNLDIITQAQLVKPYRALRENEISIAYAGYFADLLDALTVEAQPNPAAYDALVSAFEM 151
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
I EL LL GF +L +C G T
Sbjct: 152 LDRGLDPFVIARIFELHLLTVTGFRPELYRCAGCGET 188
>gi|325142930|gb|EGC65289.1| DNA repair protein RecO [Neisseria meningitidis 961-5945]
Length = 263
Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 72 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GVVAPGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|56963448|ref|YP_175179.1| DNA repair protein RecO [Bacillus clausii KSM-K16]
gi|61214764|sp|Q5WHD7|RECO_BACSK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56909691|dbj|BAD64218.1| DNA repair protein RecO [Bacillus clausii KSM-K16]
Length = 256
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 2/191 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + DAI+L YGE N I+ + T++ G+ + + + V ++
Sbjct: 1 MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLY 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + E ++S Y + + ER+P L+D L + L
Sbjct: 61 FQGNGLPSLSQGEAVDSFKELQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLP 178
I +++ +L G +L C D + S G +C +
Sbjct: 121 QINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETRDPVAFSVAYAGFLCSNCIHK 180
Query: 179 YAEKMLVLPSF 189
+ F
Sbjct: 181 DERAFPITLPF 191
>gi|262040301|ref|ZP_06013552.1| DNA repair protein RecO [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007688|ref|ZP_08306027.1| DNA repair protein RecO [Klebsiella sp. MS 92-3]
gi|259042410|gb|EEW43430.1| DNA repair protein RecO [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535369|gb|EGF61851.1| DNA repair protein RecO [Klebsiella sp. MS 92-3]
Length = 225
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 12/216 (5%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
+L+V T + GR + +S R + LQ + V + R
Sbjct: 1 MLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKTLR---SAEAVSL 57
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELM 137
A LS GL + R L EL+ + S + EL
Sbjct: 58 ALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGASGSPEPALRRFELA 117
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTI 197
LL ++G+G+D C +G D + + +
Sbjct: 118 LLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASLVIDNNTFTGHHLKALASREFP 177
Query: 198 DADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
D D+L++A + T + AL+ + RE F
Sbjct: 178 DVDTLRAAKRFT-----RIALKPYLGGKPLKSRELF 208
>gi|167039987|ref|YP_001662972.1| DNA repair protein RecO [Thermoanaerobacter sp. X514]
gi|300914077|ref|ZP_07131393.1| DNA repair protein RecO [Thermoanaerobacter sp. X561]
gi|307724690|ref|YP_003904441.1| DNA repair protein RecO [Thermoanaerobacter sp. X513]
gi|238687639|sp|B0K710|RECO_THEPX RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166854227|gb|ABY92636.1| DNA repair protein RecO [Thermoanaerobacter sp. X514]
gi|300889012|gb|EFK84158.1| DNA repair protein RecO [Thermoanaerobacter sp. X561]
gi|307581751|gb|ADN55150.1| DNA repair protein RecO [Thermoanaerobacter sp. X513]
Length = 248
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L GE + I + T+ YG+ + + + + + V N+
Sbjct: 5 KTEAIVLKNNLIGETDKIATLFTKSYGKLQAVAKGARRSKSRFVNAIRPFVVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++E+H + F + + L E + LY L L
Sbjct: 65 QNYYYIDQWELIEAHKNIEKDLAKFSVASYIAETINKILEENQKSERLYLFLKHSLKAVD 124
Query: 123 IPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L CVV G ++L + S GGAVC +
Sbjct: 125 ELQIDPLIFISSYNLKLVSLLGYMPQLDNCVVCGKRENLKYFSNSCGGAVCINCKNK 181
>gi|149374707|ref|ZP_01892481.1| DNA repair protein RecO [Marinobacter algicola DG893]
gi|149361410|gb|EDM49860.1| DNA repair protein RecO [Marinobacter algicola DG893]
Length = 238
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 10/235 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M Q+ A +L R + E +++++V + GR R G S + + LQ + ++W
Sbjct: 1 MQ-QEPAYVLHRRPWRETSLMVDVFSLNAGRVTVVARGGNSAKSPLKAQLQPFQPLLLDW 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R L + GL L R LP +P +L+ +
Sbjct: 60 TGRSDLKTLTQADVR---SGPSLKRTLSLYSGLYVNELLQRLLPMADPHHQLFAAYIDVI 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGL 177
+ I + E L +G+ + +G + +
Sbjct: 117 AELSEARDVEPILRRFEQSLAAELGYDFVWDQATDSGQPVEAGRLYCYDPEQGILAEPSP 176
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ L + L +++ + + L Y LQ R F
Sbjct: 177 GARLRNLPGGTLLALANGDLESVECRRIAKRVTRVLVDYLLQ---GKVLHSRSLF 228
>gi|241760492|ref|ZP_04758585.1| DNA repair protein RecO [Neisseria flavescens SK114]
gi|241318996|gb|EER55498.1| DNA repair protein RecO [Neisseria flavescens SK114]
Length = 247
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASAPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD+L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDVLAETMKTICCEA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL AV +
Sbjct: 130 NHIAALRRFEWTLLTRLGFAPDLFHDGNGNEINSDETYWLTPEEAVVHLAEADRFHALNK 189
Query: 186 LPSFL------WKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ L +E + +SL A ++T ++ L I R+
Sbjct: 190 GVAVLGATLIDLREGSFVHQESLGQALKVTRLLIDN--LLPEGI---KSRQVL 237
>gi|218768788|ref|YP_002343300.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis Z2491]
gi|121052796|emb|CAM09142.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis Z2491]
Length = 264
Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L LV +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVLVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCCKA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 130 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GVVAPGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|17865561|sp|Q9JT15|RECO_NEIMA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|6274541|gb|AAF06689.1|AF163663_14 putative DNA repair protein homolog RecO [Neisseria meningitidis]
Length = 263
Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L LV +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVLVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 72 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GVVAPGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|289578135|ref|YP_003476762.1| DNA repair protein RecO [Thermoanaerobacter italicus Ab9]
gi|289527848|gb|ADD02200.1| DNA repair protein RecO [Thermoanaerobacter italicus Ab9]
Length = 248
Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L S GE + + + T+ YG+ + + + + + + N+
Sbjct: 5 KTEAIVLKNNSIGETDKMATLFTKNYGKLRAVAKGARRSKSRFVNAIRPFMVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++ESH F + + L E + +LY L
Sbjct: 65 QNYYYIDQWELIESHKNIEKDLVKFSVASYISETVNKILEENQKSEKLYQFLKHSFKAVD 124
Query: 123 IPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L C+V G +DL + S GG VC
Sbjct: 125 ELQIDPLIFIASYNLKLVSLLGYMPQLDNCIVCGKREDLKYFSNSCGGVVCTICKNK 181
>gi|83589465|ref|YP_429474.1| DNA replication and repair protein RecO [Moorella thermoacetica
ATCC 39073]
gi|119361465|sp|Q2RKV8|RECO_MOOTA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|83572379|gb|ABC18931.1| DNA replication and repair protein RecO [Moorella thermoacetica
ATCC 39073]
Length = 267
Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 16/218 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+Q + I+L R Y E + +L ++TR +G+ V+ + R + Q R + +
Sbjct: 5 FQAEGIVLKSRDYQETDQLLTILTRTHGKLEAIVKGVRKPRSSLRSGTQQLCRSRFLFYA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E + Y + + + +Y +L L
Sbjct: 65 GKSLATVTQCEVQ-EIYGPLRQDLKRLAYAYYLVEIADGVVMPGQVNQAMYLLLQQGLEA 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSVGL 177
+ E LK +G L C + + ++P +GGA+C
Sbjct: 124 L-GELEPALVARAFEARTLKLLGLAPRLEACALCQRELKGNGRVAIAPAAGGALCPEC-- 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
+ +L L +L +L +
Sbjct: 181 ----RGHQGREYLVSRGGVKTWQQLN---RLNWSYLKR 211
>gi|300087574|ref|YP_003758096.1| DNA repair protein RecO [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527307|gb|ADJ25775.1| DNA repair protein RecO [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 264
Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 17/233 (7%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWR 59
+ AI++ E + I+ TR+ GR R + S R+ L+ N +
Sbjct: 6 ELKTPAIVIRRARLKEADRIITFFTRELGRVSALARGVRKPSSRLAGHLEPLNHTDLTLA 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ L H S Y L + RF PE E ++D+L L+
Sbjct: 66 M-GKALPTIIGSQTLNPHLCLRSSLERTSYALYFAELVARFTPEEEANRRVFDLLAEALD 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAV------C 172
+ + E+ LL +G+ L C+ G + S G V
Sbjct: 125 AACDADNLELLARYFEVNLLAALGYQPRLGACLDCGKALKTETNYFANSLGGVLCPQCAS 184
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLK-SAFQ-----LTDYFLNKYALQ 219
R+ P + L + FL A + L +L ++ L+
Sbjct: 185 RAPVAPVSVNALKVLRFLDDHSLEQSARLILDDGLNREIRQLLGAYL-RFLLE 236
>gi|297544410|ref|YP_003676712.1| DNA repair protein RecO [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842185|gb|ADH60701.1| DNA repair protein RecO [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 248
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L S GE + + + T+ YG+ + + + + + + N+
Sbjct: 5 KTEAIVLKNNSIGETDKMATLFTKNYGKLRAVAKGARRSKSRFVNAIRPFMVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++ESH F + + L E + +LY L
Sbjct: 65 QNYYYIDQWELIESHKNIEKDLVKFSVASYISETVNKILEENQKSEKLYQFLKHSFKAVN 124
Query: 123 IPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L C+V G +DL + S GG VC
Sbjct: 125 ELQIDPLIFIVSYNLKLVSLLGYMPQLDNCIVCGKREDLKYFSNSCGGVVCTICKNK 181
>gi|119897935|ref|YP_933148.1| DNA repair protein RecO [Azoarcus sp. BH72]
gi|166221882|sp|A1K606|RECO_AZOSB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119670348|emb|CAL94261.1| DNA repair protein RecO (recombination protein O) [Azoarcus sp.
BH72]
Length = 243
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 5/151 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
A +L + E ++I+EV +R +GR + + + +L A + ++W
Sbjct: 12 AWVLHTLPWRETSLIVEVFSRDHGRLALVAKGARRPHSAFRGVLMAFQPLLMDWSGGGEV 71
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
LL+ L G L + P +P L+ + +
Sbjct: 72 RT---LVRAEWQGGQPLLTGQALLCGYYLNELLVKLTPRDDPHPNLFVAYADAVRELGLG 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ Q EL LL+ +G+G++L V +G
Sbjct: 129 RPPPPVLRQFELALLQELGYGIELVHDVQSG 159
>gi|221135231|ref|ZP_03561534.1| DNA repair protein RecO [Glaciecola sp. HTCC2999]
Length = 242
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 21/242 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L R+Y E + ++++++ + G+ R +S + + +LQ + +
Sbjct: 10 TGFVLHRRAYQESSFLVDILSLEAGKIRCVARGMRSAKSDRKSVLQPFQPIACELTGKSE 69
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ +S L + G+ + R LP PC ++ + L
Sbjct: 70 LKSVKNAENTDKSIP---LQHTSLFCGMYLNELINRVLPSNIPCPDIVNDYYETLKQLHT 126
Query: 124 --------PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRS 174
EL LL +G+ DL+ V T +D + S +
Sbjct: 127 SQKFNSTLQPHQEAQLRCFELNLLAELGYLPDLSCEVRTQTAIEDDMDYVFISDQGLFLK 186
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
P+ + ++ +SL++A +T + A Q + RE F+
Sbjct: 187 QWYPHLTSVKGQWINDALAQR-WHPESLRTAKWIT-----RQAFQPLLGDKPLKSRELFV 240
Query: 234 GK 235
K
Sbjct: 241 SK 242
>gi|188585832|ref|YP_001917377.1| DNA repair protein RecO [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350519|gb|ACB84789.1| DNA repair protein RecO [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 257
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 77/194 (39%), Gaps = 2/194 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ DA+++ R Y + + I+ + T YGR V+ + + + + N++
Sbjct: 5 YNSDAVVIRSRDYRDYDKIINLFTPYYGRVSAVVKGVKKPKSKLAGIVQSFTYGNYQLYS 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLNCH 121
++LG + +L + + + I + + +PE E L+ + +
Sbjct: 65 GKSLGRLVQGKVLHGFQELRTDLVLMSAGMCILELIDKAIPEGEEYPALFGVTLSCFHLL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLPYA 180
+ + E L+ N+G +L+ C+ G Q L+ P++GG +C +
Sbjct: 125 EKSYPPSLVLRIFEAKLIHNLGVSPELSGCINHGSITQGNLYFDPETGGLICETCFEQLT 184
Query: 181 EKMLVLPSFLWKEE 194
E +F ++
Sbjct: 185 ENRGPGRAFPVEKG 198
>gi|212636521|ref|YP_002313046.1| Recombination protein O, RecO [Shewanella piezotolerans WP3]
gi|212558005|gb|ACJ30459.1| Recombination protein O, RecO [Shewanella piezotolerans WP3]
Length = 237
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 12/235 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM-QPILQAGNLVRVNWRSRLA 63
+ +L R + E ++++ ++ GR R G S + I+Q + + +
Sbjct: 2 ERGYVLHTRPFRESSVLVNLLVDGKGRVDAVARLGSSKNSIRSIVQPFQPLIFQLQGKSD 61
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+V + A L+ + GL L R L + L+ + L
Sbjct: 62 LKN---LKQVEAASPAVPLTGNCLYSGLYLNELLIRCLTVQHSAENLFFNYHQTLIAMAK 118
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA-EK 182
++ EL LL+ +G L + + + Y K
Sbjct: 119 EFNQSQLR-YFELALLQELGTMPSLEYDPSGAAMTASGFYRLEIEHGFMPVIATQYNQHK 177
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKL 236
++Q++ A A + L + L + R FL K+
Sbjct: 178 FFTGEMLFALKKQSLSATHFAEAKK-----LMRQLLAPTLGDKPLHSRNLFLKKM 227
>gi|225182108|ref|ZP_03735536.1| DNA repair protein RecO [Dethiobacter alkaliphilus AHT 1]
gi|225167195|gb|EEG76018.1| DNA repair protein RecO [Dethiobacter alkaliphilus AHT 1]
Length = 247
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 1/173 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRL 62
+ AI+L R Y E + ++ ++TR G+ R + + + L + R
Sbjct: 5 RSPAIVLRGRDYREADRLVTLLTRDAGKVTVVARGTKKTKSKFSALVEPLTLGHFLLRRG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ E+++ + + LF Y R LPE EP + ++ +L L +
Sbjct: 65 KSLDTLIQGEIIKPYNSLRKDLLLFTYAQYFCEVCERSLPENEPAVPVFTLLLTALETLE 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++ EL LL +GF L C G +P GG +C
Sbjct: 125 TEADSARVARCFELNLLDELGFRPVLDACCTCGTATGPFLFTPGHGGLLCGHC 177
>gi|331004917|ref|ZP_08328331.1| DNA recombination and repair protein RecO [gamma proteobacterium
IMCC1989]
gi|330421267|gb|EGG95519.1| DNA recombination and repair protein RecO [gamma proteobacterium
IMCC1989]
Length = 229
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-----SHRMQPILQAGNLVRVNWRSRLAQ 64
L R Y + +++++++++ +G+ R + S + +LQ + ++W +
Sbjct: 2 LHTRPYRDTSLLVDILSQSHGKLTLIARGARKTSKSSQNPRHLLQPFMPLSLSWTGKGTL 61
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ + A L + + L L E +P ++Y L+
Sbjct: 62 KT---LTTMEAAAPAIPLIGHHLYSAMYANELLVYLLQEGDPNEDIYVHYEKLLSMLSNT 118
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSVGLPYAE 181
I Q E LL +G+ + + T + + G V +
Sbjct: 119 QYSIEAALRQFEFALLAVLGYEIGFSHDAETQLPLKASEYYYYVHEQGFVAANAHPEIRG 178
Query: 182 KMLVLPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLG 234
S L + ++L++A Q+ + AL+ + + +E FL
Sbjct: 179 MSFDGESLLGISVSNYERPNTLQAAKQI-----ARMALKPYLRNRPLHSKELFLS 228
>gi|307266974|ref|ZP_07548491.1| DNA repair protein RecO [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918023|gb|EFN48280.1| DNA repair protein RecO [Thermoanaerobacter wiegelii Rt8.B1]
Length = 248
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 2/177 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
+ +AI+L GE + I + T+ YG+ + + + + + V N+
Sbjct: 5 KTEAIVLKNNLIGETDKIATLFTKSYGKLQAVAKGARRSKSRFVNAIRLFVVANYVIFEG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++E++E+H + F + + L E + LY L L
Sbjct: 65 QNYYYIDQWELIEAHKNIEKDLAKFSVASYIAETINKILEENQKSERLYLFLKHSLKAVD 124
Query: 123 IPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ IF+ L L+ +G+ L CVV G ++L + S GGAVC +
Sbjct: 125 ELQIDPLIFISSYNLKLVSLLGYMPQLDNCVVCGKRENLKYFSNSCGGAVCINCKNK 181
>gi|302391465|ref|YP_003827285.1| DNA repair protein RecO [Acetohalobium arabaticum DSM 5501]
gi|302203542|gb|ADL12220.1| DNA repair protein RecO [Acetohalobium arabaticum DSM 5501]
Length = 251
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 4/180 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ +AI+L E + I+ + TRQ+G+ + + + ++ +
Sbjct: 4 YKTEAIVLKYYELKEADKIIVLYTRQHGKVQAVANGARKTKSRLAGSVELFTYSDFLLYQ 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E++ S + Y + + F + E L+ +L L
Sbjct: 64 GKSLSTISQTEIINSFASLRDDLFKMAYASYVVEVVNEFTVDEEKNEPLFALLLATLYML 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG---VTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL +G+ L CV D + S K GG VC L
Sbjct: 124 DRGEELELATRFFELRLLNLLGYRPQLDACVDCDLDLAKIDKVKFSSKLGGVVCADCALE 183
>gi|302038212|ref|YP_003798534.1| putative DNA repair protein RecO [Candidatus Nitrospira defluvii]
gi|300606276|emb|CBK42609.1| putative DNA repair protein RecO [Candidatus Nitrospira defluvii]
Length = 252
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 5/178 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ AI+L R +G+ + I+ T + G+ G R + + + +++ L +++ +
Sbjct: 5 KTAAIVLHSRKWGDADRIVTFYTMRLGKLRGVARGARRLKSRLGGMIEPFTLCQLDLFEK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNC 120
+L L+ AK + +V L + +P +++ML L
Sbjct: 65 PGDSLYRISQVALDEPFAKFRDDLTLMTAAGRMVNLVSAVMAEGDPEPRVFEMLESGLRT 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCRSVG 176
+ ++ LL GF +C G L SP +GG VC
Sbjct: 125 LLESRDAAWTTLLFQIRLLGMTGFRPQTEQCATCGQVHRSPLPQFSPMAGGIVCERCA 182
>gi|255065035|ref|ZP_05316890.1| DNA repair protein RecO [Neisseria sicca ATCC 29256]
gi|255050456|gb|EET45920.1| DNA repair protein RecO [Neisseria sicca ATCC 29256]
Length = 262
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 65/233 (27%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +EV +R+YGR R+ + + + +L V +W
Sbjct: 28 FLLASAPWRESSLWVEVFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 87
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + S
Sbjct: 88 TLH---RAEWIGGWPQPQGRALFSGLYINELMLKLTTREDPIPELYDALEAVMRAVCGES 144
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL + AV
Sbjct: 145 GHTAALRRFEWTLLNRLGFAPDLFHDGNGEAIRAEETYWLTPENAVVPIEEAERFNPRNH 204
Query: 186 LP------SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+E +SL + ++T ++ L I R+
Sbjct: 205 GVAIGGDILIQLREGDFTHPESLGQSLKITRLLIDN--LLPEGI---KSRQVL 252
>gi|254796817|ref|YP_003081654.1| DNA repair protein RecO [Neorickettsia risticii str. Illinois]
gi|254590066|gb|ACT69428.1| DNA repair protein RecO [Neorickettsia risticii str. Illinois]
Length = 238
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W+++ I+L + E + + T+ YG G + + GN+V W +
Sbjct: 1 MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLC------SRKATIDVGNVVYCKWSA 54
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
RL LG FR EV E L + L L ++ L + LPE EP E+Y + L
Sbjct: 55 RLESQLGYFRVEVKEIISPFLFTDYKKLKLLNAVLSILLKVLPENEPQKEIYKIFIQLLQ 114
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + ++L +L+++GF LDL++C VTG T++L ++SPK+G AV ++VG
Sbjct: 115 AFKSETSCYYRQYIEMDLSILRHLGFQLDLSRCTVTGETKNLFYISPKTGRAVTKAVGEA 174
Query: 179 YAEKMLVLPSFLWKEEQTIDADS 201
Y +K+L+LP L+K + +
Sbjct: 175 YKDKLLLLPPSLYKIANGLSLED 197
>gi|226943501|ref|YP_002798574.1| DNA repair protein RecO [Azotobacter vinelandii DJ]
gi|226718428|gb|ACO77599.1| DNA repair protein RecO [Azotobacter vinelandii DJ]
Length = 230
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A IL R Y E +++ + T GR +R+ + + + + + + R R
Sbjct: 5 PAFILHSRPYRESSVLADFFTP-QGRLRAAMRSARG-KSGSLARPFVPLELVLRGRSELK 62
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + + L+ + GL L R LP +P L++ ++ L+ +
Sbjct: 63 S---VARLESNGSPRWLTGASLFSGLYLNELLIRLLPPEDPFPSLFEHYSLTLDALAVGR 119
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+G L + + Q V +
Sbjct: 120 PLEPLLRAFEWRLLVELGYGFSLDRDLNGQSVQVRRLYRLLPD--VGLEPVDQLQPGLFS 177
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L E +A + L + AL ++ L RE F
Sbjct: 178 GGELLAMAEADWRFPGALAAAKR----LMRQALAPHLGGRPLVSRELFTNL 224
>gi|15676358|ref|NP_273494.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis MC58]
gi|17865562|sp|Q9K0W0|RECO_NEIMB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|7225672|gb|AAF40884.1| DNA repair protein RecO [Neisseria meningitidis MC58]
gi|316985790|gb|EFV64733.1| DNA repair protein RecO [Neisseria meningitidis H44/76]
gi|325140961|gb|EGC63468.1| DNA repair protein RecO [Neisseria meningitidis CU385]
gi|325199634|gb|ADY95089.1| DNA repair protein RecO [Neisseria meningitidis H44/76]
Length = 263
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V V+W
Sbjct: 12 FMLASSPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFGGLYVNELVLKLTAREDPVPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GVVAPGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|308234875|ref|ZP_07665612.1| DNA repair protein RecO [Gardnerella vaginalis ATCC 14018]
Length = 244
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 23/241 (9%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ D+A++L GE + I+ ++T+++G+ + + + + L+ V + +
Sbjct: 4 YNDEAVVLKTFPLGEADRIVVMLTKKHGKIRAVAKGVRKIKSRFGARLEPFMRVNALFAT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ V + L+ + + N+ +
Sbjct: 64 GRTFDVVSQAVLVSAYAESICADYDLYSRASMIAEIADDLVSSSAQYQDSCMQYNLLVAA 123
Query: 121 HK----IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
I L LK G+ L +CVV DL + S SGG +C
Sbjct: 124 LSALSRGLHSADSIGFSYVLRALKLAGWSPMLNECVVCATKDDLSYFSSCSGGVMCSKDH 183
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL-----------TDYFLNK-----YALQH 220
+ K L F D ++ + +Y+L + + L++
Sbjct: 184 DLQSIKCNGLARFQMISLINGDWKNI-DGTDIDYLTYRCVEQWCEYYLERPIKSMHLLEN 242
Query: 221 N 221
N
Sbjct: 243 N 243
>gi|329934670|ref|ZP_08284711.1| DNA recombination and repair protein RecO [Streptomyces
griseoaurantiacus M045]
gi|329305492|gb|EGG49348.1| DNA recombination and repair protein RecO [Streptomyces
griseoaurantiacus M045]
Length = 248
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 KGSELIGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG
Sbjct: 124 LVGGLRTLSRDEHAPHLV--LDAFLLRSLAVNGYAPSFGDCAKCGMPGPNRFFSVASGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D +
Sbjct: 182 VCADCRVPGSVVPSPQALELLGALLTGDWAT 212
>gi|330811508|ref|YP_004355970.1| DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379616|gb|AEA70966.1| DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 229
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 5/151 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A +L R+Y E + +++ +T GR +R + + + + + V +R R
Sbjct: 11 AYVLHSRAYRESSALVDFLTP-QGRLRAVLRGARG-KAGTLARPFVPLEVEFRGRGELKN 68
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
A L+ GL L R LP +P ++D L
Sbjct: 69 VGRMESN---GVAAWLNGEALFSGLYLNELLIRLLPAEDPHPAVFDHYAATLLALAEGRP 125
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ + E LL ++G+G L +
Sbjct: 126 LEPLLRSFEWRLLDDLGYGFALNTDLHGEPI 156
>gi|261365754|ref|ZP_05978637.1| DNA repair protein RecO [Neisseria mucosa ATCC 25996]
gi|288565714|gb|EFC87274.1| DNA repair protein RecO [Neisseria mucosa ATCC 25996]
Length = 246
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 65/233 (27%), Gaps = 16/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +EV +R+YGR R+ + + + +L V +W
Sbjct: 12 FLLASAPWRESSLWVEVFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 72 TLH---RAEWIGGWPQPQGRALFSGLYINELMLKLTAREDPIPELYDALEAVMRAVCGEN 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ E LL +GF DL + AV
Sbjct: 129 SHTAALRRFEWALLTRLGFAPDLFHDGNGEAIRAEETYWLTPENAVVPIEEAERFNPRNH 188
Query: 186 LP------SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+E +SL + ++T ++ L I R+
Sbjct: 189 GVAVSGDILIQLREGDFTHPESLGQSLKITRLLIDN--LLPEGI---KSRQVL 236
>gi|328882348|emb|CCA55587.1| DNA recombination and repair protein RecO [Streptomyces venezuelae
ATCC 10712]
Length = 249
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRTLARGEHAPHL--ILDAFLLRSLAVNGYAPSFEDCAKCGIHGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+C +P + L T D +
Sbjct: 182 ICGDCRVPGSVVPSPEAIGLLSALLTGDWAT 212
>gi|309378286|emb|CBX23074.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 263
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V V+W
Sbjct: 12 FMLASSPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFGGLYVNELVLKLTAREDPVPELYDALAKVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GVVAPGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|262277164|ref|ZP_06054957.1| DNA repair protein RecO [alpha proteobacterium HIMB114]
gi|262224267|gb|EEY74726.1| DNA repair protein RecO [alpha proteobacterium HIMB114]
Length = 208
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 32/239 (13%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W D +L V + E + +++V +R++G G V S + +P LQ GN +++N+ S
Sbjct: 1 MRWSDIGYLLSVSATKENSSLVKVFSREHGCVTGVVYGSSSKKKKPDLQIGNKIKLNFNS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSS-SLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ LG F E++E+ K + + SI + + +PE++ E +D + +
Sbjct: 61 KNEDALGYFSIELMENISIKFFNDLKKLNLLIISIEVISKIMPEQQKYTECFDEYDQLIK 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ S+ + E LKNIG+G+DL +
Sbjct: 121 SLEGDSLKSYL--IWEFNFLKNIGYGVDLNE----------------------------- 149
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
V+ S L + LK+ F L ++ + I R L L E
Sbjct: 150 EGFNPVIKSILNGSSIDFTIEDLKAIFNLNSETISNRLVDVINITNFKNRPKILNYLNE 208
>gi|239931393|ref|ZP_04688346.1| DNA repair protein RecO [Streptomyces ghanaensis ATCC 14672]
gi|291439766|ref|ZP_06579156.1| DNA repair protein RecO [Streptomyces ghanaensis ATCC 14672]
gi|291342661|gb|EFE69617.1| DNA repair protein RecO [Streptomyces ghanaensis ATCC 14672]
Length = 248
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 82/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 KGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG+
Sbjct: 124 LVGALRTLARGEHAPHLV--LDAFLLRSLAVNGYAPSFGDCAKCGMPGPNRFFSVASGGS 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+C +P + L T D ++
Sbjct: 182 LCVDCRVPGSVVPSPQALELLGALLTGDWET 212
>gi|282861797|ref|ZP_06270861.1| DNA repair protein RecO [Streptomyces sp. ACTE]
gi|282563613|gb|EFB69151.1| DNA repair protein RecO [Streptomyces sp. ACTE]
Length = 248
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITILTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGGGIVADYGRYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG
Sbjct: 124 LVGGLRTLARAEHAPNL--ILDAFLLRSLAVNGYAPSFDDCARCGMPGPNRFFSVASGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D ++
Sbjct: 182 VCGDCRVPGSVVPSAEAVELLSALLTGDWET 212
>gi|251796249|ref|YP_003010980.1| DNA repair protein RecO [Paenibacillus sp. JDR-2]
gi|247543875|gb|ACT00894.1| DNA repair protein RecO [Paenibacillus sp. JDR-2]
Length = 249
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ ++T+ G+ VR + + + + Q +
Sbjct: 1 MLYRVEGIVIRSMDYGEGNKIITLLTKTNGKLGVMVRGAKKVKSRHASLAQPFTYGEFVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R E+LESH L Y + L E E L++ L L
Sbjct: 61 F-RNKGLGTLNAGEILESHHLLREQLDLAAYASYLAELTDKMLQEDESGAMLFEQLKAGL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + E+ +L+ G+ +L CV Q ++P +GG +C
Sbjct: 120 AAMEEGKDPQIVSHLFEMRILEAAGYAPELEICVNCSSEQGPFRLNPHAGGVLCTRCA 177
>gi|70728455|ref|YP_258204.1| DNA repair protein RecO [Pseudomonas fluorescens Pf-5]
gi|92087031|sp|Q4KHS9|RECO_PSEF5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|68342754|gb|AAY90360.1| DNA repair protein RecO [Pseudomonas fluorescens Pf-5]
Length = 229
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 5/147 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A +L R+Y E + +++ +T GR +RN + + + + + V +R R
Sbjct: 11 AYVLHSRAYRESSALVDFLTP-QGRLRAVLRNARG-KAGTLARPFVPLEVEFRGRGELKN 68
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + A L+ GL L R LP +P ++D L
Sbjct: 69 ---VGRMESAGIAAWLNGEALFSGLYLNELLIRLLPAEDPHPAVFDHYAATLLALAEGRP 125
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVV 153
+ + E LL ++G+G L +
Sbjct: 126 LEPLLRAFEWRLLDDLGYGFALDSDIH 152
>gi|254521728|ref|ZP_05133783.1| DNA repair protein RecO [Stenotrophomonas sp. SKA14]
gi|219719319|gb|EED37844.1| DNA repair protein RecO [Stenotrophomonas sp. SKA14]
Length = 239
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 14/230 (6%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M D +L R+Y E ++++EV++ Q+GR R + ++ LQ +R +
Sbjct: 2 MIEDDTGFVLHARAYRETSLLVEVLSAQHGRIGLLARGVSTAKGQVLRAALQPLQWIRFS 61
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R + A L L G R P ++P ELY
Sbjct: 62 AQQRGELAQLRAAEALD---AAPRLVGQAMLAGFYLSELTLRLAPRQDPLPELYLAYGEA 118
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG---GAVCRS 174
+ + + + E LL +G G +L +
Sbjct: 119 RARLAVGAGLAWTLRRFERELLSALGLGFELDSASDGQPIDPAARYELDPQEGAQRLLSE 178
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIH 224
G ++ DA L ++ +L + L H++
Sbjct: 179 RGGERRAAATGSALLALAADEEPDATDL-ASLRLP----MRRVLAHHLGP 223
>gi|25028739|ref|NP_738793.1| DNA repair protein RecO [Corynebacterium efficiens YS-314]
gi|259507800|ref|ZP_05750700.1| DNA repair protein RecO [Corynebacterium efficiens YS-314]
gi|23494025|dbj|BAC18993.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164593|gb|EEW49147.1| DNA repair protein RecO [Corynebacterium efficiens YS-314]
Length = 242
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 3/183 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A+++ +GE + I+ ++TR +G G + + + + LQ + V
Sbjct: 6 YRDRALVVRTHDFGEADRIVVLLTRDHGIVRGVAKGVRRSKSRFGSRLQLFVELDVQLYP 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + ++ +I+ + + E L+D L
Sbjct: 66 -GRNLSTISGADTVGYYASGIIDDFKRYSAASAILEIASSIAPMEQGPYLFDATTAALQR 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + L + + G+ L C G P +GGAVC +
Sbjct: 125 MQNAEHPVLLLDEYMLRAMDHAGWAPSLFDCAQCGRPGPHTAFHPGAGGAVCLYCRPQGS 184
Query: 181 EKM 183
K+
Sbjct: 185 AKI 187
>gi|254382925|ref|ZP_04998281.1| DNA repair protein recO [Streptomyces sp. Mg1]
gi|194341826|gb|EDX22792.1| DNA repair protein recO [Streptomyces sp. Mg1]
Length = 248
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 75/190 (39%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGAGLEPFSHADVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + +++ + +++ +++ E E + Y +
Sbjct: 64 RGSELIGRSLPLCTQTQIIAPYGNGIVTDYARYTAGTAMLETAERFTENEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ S +GG
Sbjct: 124 LVGALRTLSRGEHEPHL--ILDAFLLRSLAVNGYAPSFDDCAKCGIHGPNRHFSVAAGGV 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGDCRVPGS 191
>gi|42559491|sp|Q8RB48|RECO_THETN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 247
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 3/193 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + +AI+L EK+ I + TR YG+ + + + + + + N+
Sbjct: 1 MRFLKTEAIVLKSNLISEKDKIATLFTRDYGKLQAVAKGARRSKSRFVNAVRPFIVANYV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
++E++++ F + R L E++ +LY L
Sbjct: 61 IFEGQNYYYIDQWELVKNFENIEKDLKKFALASYISETISRVLEEKQKNTKLYFFTKHSL 120
Query: 119 NCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ +V IF+ L L+ +G+ L C V G ++L + S GGAVC+
Sbjct: 121 EAVESLNVETSIFLFSYTLKLISLLGYMPVLDSCAVCGKKENLSYFSSSCGGAVCKDCNE 180
Query: 178 PYAEKMLVLPSFL 190
+ + L
Sbjct: 181 TCKDAKFLNKKVL 193
>gi|161831256|ref|YP_001597343.1| DNA repair protein RecO [Coxiella burnetii RSA 331]
gi|189039654|sp|A9N940|RECO_COXBR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|161763123|gb|ABX78765.1| DNA repair protein RecO [Coxiella burnetii RSA 331]
Length = 234
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 14/234 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRL 62
+ A IL R Y ++ILE++T +GR R+ + R + L+ + + ++W R
Sbjct: 8 EPAFILHRRPYSNTSLILELLTPNHGRVCALARSARGLKSRYKGKLELFSPLLISWSGRS 67
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
F +V + LL L G L R L +P L L+ L
Sbjct: 68 DLK---FLGDVEANGMPYLLEGEALLCGFYLNELLIRLLHHDDPYLRLFHHYQNTLEKL- 123
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG---VTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E LL +G+GL L+ V P G +C
Sbjct: 124 VNGRLEATLRCFEKQLLDELGYGLPLSCDVEMKLPFKPDQFYQYLPDRGFLLCEKSEESE 183
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ S L +E++ +S + +L + L + RE
Sbjct: 184 ERDVFSGKSLLALQEESFSDESSLKEIK----YLMRLTLNRLLGKKPLKTRELL 233
>gi|302534318|ref|ZP_07286660.1| DNA repair protein RecO [Streptomyces sp. C]
gi|302443213|gb|EFL15029.1| DNA repair protein RecO [Streptomyces sp. C]
Length = 248
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 76/210 (36%), Gaps = 14/210 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHADVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R + +G + E++ + + + +++ E E + Y +
Sbjct: 64 RGSDLVGRSLPLCTQTEIIAPYGNGIATDYARYTAGTAMLETAERFTENEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ S +GG
Sbjct: 124 LVGALRTLSRGEHEPHL--ILDAFLLRSLAVNGYAPSFEDCAKCGIHGPNRHFSVAAGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDAD 200
+C +P + L T D
Sbjct: 182 ICGDCRVPGSVVPSSEAIGLLSALLTGDWK 211
>gi|89895849|ref|YP_519336.1| hypothetical protein DSY3103 [Desulfitobacterium hafniense Y51]
gi|119361456|sp|Q24SV0|RECO_DESHY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|89335297|dbj|BAE84892.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 273
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 4/176 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
+ DA+++ R YGE + +L + +R+YG+ + + + + A + +
Sbjct: 4 YHADALVIRSREYGESDRLLTLFSREYGKIQAVAKGVRKPKSRQRAGAQLFTYAEYLLHK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ES + + L +P EL+ + L
Sbjct: 64 GKSLDTVNQVSPRESFPHLWTDLDMSMAATAMAELLDLATLPGQPHPELFTLTFSSLFLV 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSV 175
+ L+ +G+ L +C G V + L SP +GG VCR
Sbjct: 124 ESCDPALVQCTYALK-LMNYLGYRPRLVECAECGQRVQGERLLFSPDAGGVVCRQC 178
>gi|219670279|ref|YP_002460714.1| DNA repair protein RecO [Desulfitobacterium hafniense DCB-2]
gi|254790519|sp|B8FUK8|RECO_DESHD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|219540539|gb|ACL22278.1| DNA repair protein RecO [Desulfitobacterium hafniense DCB-2]
Length = 273
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 4/176 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
+ DA+++ R YGE + +L + +R+YG+ + + + + A + +
Sbjct: 4 YHADALVIRSREYGESDRLLTLFSREYGKIQAVAKGVRKPKSRQRAGAQLFTYAEYLLHK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ES + + L +P EL+ + L
Sbjct: 64 GKSLDTVNQVSPRESFPHLWTDLDMSMAATAMAELLDLATLPGQPHPELFTLTFSSLFLV 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSV 175
+ L+ +G+ L +C G V + L SP +GG VCR
Sbjct: 124 ESCDPALVQCTYALK-LMNYLGYRPRLVECAECGQRVQGERLLFSPDAGGVVCRQC 178
>gi|311895950|dbj|BAJ28358.1| putative DNA repair protein RecO [Kitasatospora setae KM-6054]
Length = 248
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ +TRQ+G+ R + + + L+ + V V + S
Sbjct: 4 FRDDGIVLRTQKLGEADRIITFLTRQHGQVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R + +G + E + + A+++ +++ E E + Y +
Sbjct: 64 RGSDLVGRTLPLCTQVETIAPYGARIVDDYTRYTAGTAMLETAERFAENEGQPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + + ++ LL+++ G+G T C G+ + S ++GG
Sbjct: 124 LVGALRTLAAGTHQAHLV--LDAFLLRSLAVNGYGASFTDCARCGLPGPNRFFSLQAGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+C +P + L + D +
Sbjct: 182 LCGDCRVPGSAVPSPETLVLLGALLSGDWQT 212
>gi|146317683|ref|YP_001197395.1| DNA repair protein RecO [Streptococcus suis 05ZYH33]
gi|146319875|ref|YP_001199586.1| DNA repair protein RecO [Streptococcus suis 98HAH33]
gi|223932387|ref|ZP_03624390.1| DNA repair protein RecO [Streptococcus suis 89/1591]
gi|253750945|ref|YP_003024086.1| DNA repair protein RecO [Streptococcus suis SC84]
gi|253752844|ref|YP_003025984.1| DNA repair protein RecO [Streptococcus suis P1/7]
gi|302023128|ref|ZP_07248339.1| DNA repair protein RecO [Streptococcus suis 05HAS68]
gi|330831873|ref|YP_004400698.1| DNA repair protein RecO [Streptococcus suis ST3]
gi|166221913|sp|A4VYJ7|RECO_STRS2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221915|sp|A4VSA6|RECO_STRSY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145688489|gb|ABP88995.1| Recombinational DNA repair protein (RecF pathway) [Streptococcus
suis 05ZYH33]
gi|145690681|gb|ABP91186.1| Recombinational DNA repair protein (RecF pathway) [Streptococcus
suis 98HAH33]
gi|223899068|gb|EEF65426.1| DNA repair protein RecO [Streptococcus suis 89/1591]
gi|251815234|emb|CAZ50798.1| DNA repair protein RecO [Streptococcus suis SC84]
gi|251819089|emb|CAR44123.1| DNA repair protein RecO [Streptococcus suis P1/7]
gi|292557486|gb|ADE30487.1| Recombination protein O [Streptococcus suis GZ1]
gi|319757194|gb|ADV69136.1| DNA repair protein RecO [Streptococcus suis JS14]
gi|329306096|gb|AEB80512.1| DNA repair protein RecO [Streptococcus suis ST3]
Length = 260
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 2/203 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ ++L R++ E + ++++ T + G+ + FV++ ++ +Q +
Sbjct: 3 RIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKIN 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
F ++ Y + L ++ L+ L L+
Sbjct: 63 DDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLM 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + E+ LL G L+ +C S K G +C
Sbjct: 123 ESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGLPFDYSYKYSGVLCPQHYQQDER 182
Query: 182 KMLVLP--SFLWKEEQTIDADSL 202
+ + P +L + Q I D L
Sbjct: 183 RAYLDPNVPYLLDQFQAISFDEL 205
>gi|253754669|ref|YP_003027809.1| DNA repair protein RecO [Streptococcus suis BM407]
gi|251817133|emb|CAZ54854.1| DNA repair protein RecO [Streptococcus suis BM407]
Length = 260
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 2/203 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ ++L R++ E + ++++ T + G+ + FV++ ++ +Q +
Sbjct: 3 RIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKIN 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
F ++ Y + L ++ L+ L L+
Sbjct: 63 DDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLM 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + E+ LL G L+ +C S K G +C
Sbjct: 123 ESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGLPFAYSYKYSGVLCPQHYQQDER 182
Query: 182 KMLVLP--SFLWKEEQTIDADSL 202
+ + P +L + Q I D L
Sbjct: 183 RAYLDPNVPYLLDQFQAISFDEL 205
>gi|192360449|ref|YP_001983039.1| DNA repair protein RecO [Cellvibrio japonicus Ueda107]
gi|238692465|sp|B3PL65|RECO_CELJU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|190686614|gb|ACE84292.1| DNA repair protein RecO [Cellvibrio japonicus Ueda107]
Length = 236
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 11/231 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
A IL R Y + +++L+++T YGR R + + + +L + + VNW+ +
Sbjct: 7 PAYILHARPYRDTSLLLDLLTPVYGRITAVARGVRQSKGHKRQLLNPFHRLLVNWQGKSE 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L V H L + G L R LPE++ L++ L+
Sbjct: 67 LKL---ITGVETDHHYLQLQGNALYSGFYLNELLVRLLPEQDVITGLFERYEWTLDALHR 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD-LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + + E MLL+ +G+ LD L C Q +
Sbjct: 124 GEPLEPLLREFEFMLLQGLGYALDFLHDCHSQQPIQSGYFYLCDIHQGFYSVPADSDPRF 183
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ L A + L + + + RE F
Sbjct: 184 WIAGAHLLAIAAGDYSAAD----TRRVAKQLARLLFKPLLGKRPLKSRELF 230
>gi|29654792|ref|NP_820484.1| DNA repair protein [Coxiella burnetii RSA 493]
gi|153208695|ref|ZP_01946942.1| DNA repair protein RecO [Coxiella burnetii 'MSU Goat Q177']
gi|154706512|ref|YP_001423901.1| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
gi|165919322|ref|ZP_02219408.1| DNA repair protein RecO [Coxiella burnetii RSA 334]
gi|212212138|ref|YP_002303074.1| DNA repair protein [Coxiella burnetii CbuG_Q212]
gi|212219220|ref|YP_002306007.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
gi|1710073|sp|P51838|RECO_COXBU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189039653|sp|A9KFA2|RECO_COXBN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238058642|sp|B6J4J7|RECO_COXB1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238058643|sp|B6IZ01|RECO_COXB2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|439873|gb|AAA69692.1| putative [Coxiella burnetii]
gi|29542060|gb|AAO90998.1| DNA repair protein [Coxiella burnetii RSA 493]
gi|120575806|gb|EAX32430.1| DNA repair protein RecO [Coxiella burnetii 'MSU Goat Q177']
gi|154355798|gb|ABS77260.1| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
gi|165916982|gb|EDR35586.1| DNA repair protein RecO [Coxiella burnetii RSA 334]
gi|212010548|gb|ACJ17929.1| DNA repair protein [Coxiella burnetii CbuG_Q212]
gi|212013482|gb|ACJ20862.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
Length = 231
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 78/231 (33%), Gaps = 11/231 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRL 62
+ A IL R Y ++ILE++T +GR R+ + R + L+ + + ++W R
Sbjct: 8 EPAFILHRRPYSNTSLILELLTPNHGRVCALARSARGLKSRYKGKLELFSPLLISWSGRS 67
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
F +V + LL L G L R L +P L L+ L
Sbjct: 68 DLK---FLGDVEANGMPYLLEGEALLCGFYLNELLIRLLHHDDPYLRLFHHYQNTLEKL- 123
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + E LL +G+GL L+ V +
Sbjct: 124 VNGRLEATLRCFEKQLLDELGYGLPLSCDVEMKLPFKPDQFYQYLPDRGFLLCEKSEERD 183
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ S L +E++ +S + +L + L + RE
Sbjct: 184 VFSGKSLLALQEESFSDESSLKEIK----YLMRLTLNRLLGKKPLKTRELL 230
>gi|295839012|ref|ZP_06825945.1| DNA repair protein RecO [Streptomyces sp. SPB74]
gi|295827284|gb|EFG65328.1| DNA repair protein RecO [Streptomyces sp. SPB74]
Length = 249
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGQGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGRHIVTDYSRYTAGTAMLETAERFTANEGEPAIQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L S + ++ LL+++ G+ C G+ + S SGGA
Sbjct: 124 LVGGLRTLAEGSHAPALV--MDAFLLRSLAVNGYAPSFGDCARCGLPGPNRFFSVSSGGA 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D +
Sbjct: 182 VCGDCRVPGSVVPSSETLILLGALLTGDWAT 212
>gi|311114387|ref|YP_003985608.1| recombination protein O [Gardnerella vaginalis ATCC 14019]
gi|310945881|gb|ADP38585.1| recombination protein O [Gardnerella vaginalis ATCC 14019]
Length = 247
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 23/241 (9%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ D+A++L GE + I+ ++T+++G+ + + + + L+ V + +
Sbjct: 7 YNDEAVVLKTFPLGEADRIVVMLTKKHGKIRAVAKGVRKIKSRFGARLEPFMRVNALFAT 66
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ V + L+ + + N+ +
Sbjct: 67 GRTFDVVSQAVLVSAYAESICADYDLYSRASMIAEIADDLVSSSAQYQDSCMQYNLLVAA 126
Query: 121 HK----IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
I L LK G+ L +CVV DL + S SGG +C
Sbjct: 127 LSALSRGLHSADSIGFSYVLRALKLAGWSPMLNECVVCATKDDLSYFSSCSGGVMCSKDH 186
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL-----------TDYFLNK-----YALQH 220
+ K L F D ++ + +Y+L + + L++
Sbjct: 187 DLQSIKCNGLARFQMISLINGDWKNI-DGTDIDYLTYRCVEQWCEYYLERPIKSMHLLEN 245
Query: 221 N 221
N
Sbjct: 246 N 246
>gi|329120278|ref|ZP_08248946.1| recombination protein O [Neisseria bacilliformis ATCC BAA-1200]
gi|327462619|gb|EGF08942.1| recombination protein O [Neisseria bacilliformis ATCC BAA-1200]
Length = 256
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 8/218 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ A +L + E ++ LE+ +R+YGR R+ + + + +L V V+W
Sbjct: 8 INHEPAFLLAAAPWRESSLRLEMYSRRYGRVSLLARSARKRQSELRGVLVPFVPVSVSWY 67
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
L GL + + P + +YD L L
Sbjct: 68 GGAETKTLH---RAEWLGGWPQPQGRALLSGLYLNELVLKLTPREDAQPAVYDALAQALK 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E LL +G+ DL + + G
Sbjct: 125 SVCTETAHAAALRRFEWRLLTELGYAPDLQSDADGNPVRAGTRYLIAAEQPPQPYAGGSV 184
Query: 180 AEKMLVLPSFLWK---EEQTIDADSLKSAFQLTDYFLN 214
+ L + + E + +SL A ++T L+
Sbjct: 185 PQDALTADGGILRQLHEGRFEGGESLHEALKITRLLLD 222
>gi|239941031|ref|ZP_04692968.1| DNA repair protein RecO [Streptomyces roseosporus NRRL 15998]
gi|239987510|ref|ZP_04708174.1| DNA repair protein RecO [Streptomyces roseosporus NRRL 11379]
gi|291444471|ref|ZP_06583861.1| DNA repair protein recO [Streptomyces roseosporus NRRL 15998]
gi|291347418|gb|EFE74322.1| DNA repair protein recO [Streptomyces roseosporus NRRL 15998]
Length = 248
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITILTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELVGRGLPLCTQSETIAPYGGGIVADYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRTLARGEHAPHL--ILDAFLLRSLAVNGYAPSFEDCAKCGMPGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGDCRVPGS 191
>gi|226940391|ref|YP_002795465.1| DNA repair protein RecO [Laribacter hongkongensis HLHK9]
gi|254764636|sp|C1D7L6|RECO_LARHH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226715318|gb|ACO74456.1| RecO [Laribacter hongkongensis HLHK9]
Length = 242
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 11/218 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
A +L + Y E ++++E+ TR++GR R + R ++ +L + + V W +
Sbjct: 11 QAFVLHAQPYKETSLLVEMFTREHGRVGLVARGARRPRAGIRALLLPFSPLEVGWFGKSD 70
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L+ + + G + + + +P L+D +
Sbjct: 71 ---IRTLSDIDWQGGLPQLAGTPLVTGFYVNELIMKLVARDDPHEGLFDDYRTLIAHLAR 127
Query: 124 -PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I + + EL LL G+ L + + + G
Sbjct: 128 GSVAIAPVLRRFELQLLAATGYAPTLDRDLAGEPVRADAVYGFVPGEGARPGAERGCEVS 187
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQH 220
L + A L+ A FLN+ L H
Sbjct: 188 GQTLLALDHGALDQASAAVLREA-----RFLNRALLTH 220
>gi|261401395|ref|ZP_05987520.1| DNA repair protein RecO [Neisseria lactamica ATCC 23970]
gi|269208616|gb|EEZ75071.1| DNA repair protein RecO [Neisseria lactamica ATCC 23970]
Length = 263
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V V+W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFGGLYVNELVLKLTAREDPVPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIGDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+ L SL+ A ++T F+ L + R+
Sbjct: 189 GVTAPGQSLIDLRAGSFGSGQSLQDALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|297199546|ref|ZP_06916943.1| DNA repair protein RecO [Streptomyces sviceus ATCC 29083]
gi|197713528|gb|EDY57562.1| DNA repair protein RecO [Streptomyces sviceus ATCC 29083]
Length = 250
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + ++S +++ + E + Y +
Sbjct: 64 RGSELVGRGLPLCTQSETIAPYGGGIVSDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ + C G+T + S +GG+
Sbjct: 124 LVGALRTLARGEHAPHLV--LDAFLLRSLAVNGYAPSFSDCARCGMTGPNRFFSVAAGGS 181
Query: 171 VCRSVGLPYA 180
VC +P +
Sbjct: 182 VCVDCRVPGS 191
>gi|83311360|ref|YP_421624.1| recombinational DNA repair protein [Magnetospirillum magneticum
AMB-1]
gi|82946201|dbj|BAE51065.1| Recombinational DNA repair protein [Magnetospirillum magneticum
AMB-1]
Length = 206
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 54/95 (56%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M W DD ++L VR +GE + ++TR +GRH G V GQ +PILQ GNLVR W
Sbjct: 1 MEWDDDGVVLAVRRHGETGAVASLLTRSHGRHAGLVHGGQGRANRPILQPGNLVRARWTG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIV 95
RL + LG FR E+L +H A L + L L S
Sbjct: 61 RLPEQLGNFRLEMLHAHAAAFLDDAARLAALGSAC 95
>gi|34497524|ref|NP_901739.1| DNA repair protein RecO [Chromobacterium violaceum ATCC 12472]
gi|42559446|sp|Q7NWC1|RECO_CHRVO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|34103379|gb|AAQ59741.1| DNA repair protein [Chromobacterium violaceum ATCC 12472]
Length = 245
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
IL + Y E +++LEV++R +GR R+ + R + +L + ++W +
Sbjct: 11 PGYILHTQPYRETSLLLEVLSRDHGRFSLVARSARRPRSDLRGVLLPFQPLTLSWFGKGE 70
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L+ + G + + +P + + + +
Sbjct: 71 LRTLHAADWDGGVRA---LTGLPLVCGFYLNELMMKLTARDDPEPRAFSVYDRAVRELAG 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + + EL L + +G+ L++
Sbjct: 128 GAPLSTALRRYELRLAQVLGYAPALSRDSRGEAIAADRHY 167
>gi|182438807|ref|YP_001826526.1| DNA repair protein RecO [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326779462|ref|ZP_08238727.1| DNA repair protein recO [Streptomyces cf. griseus XylebKG-1]
gi|238689003|sp|B1VY58|RECO_STRGG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|178467323|dbj|BAG21843.1| putative DNA recombination and repair protein RecO [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659795|gb|EGE44641.1| DNA repair protein recO [Streptomyces cf. griseus XylebKG-1]
Length = 248
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 75/190 (39%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITILTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R + +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGGELVGRGLPLCTQSETIAPYGGGIVADYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRTLARGEHAPHL--ILDAFLLRSLAVNGYAPSFEDCAKCGMPGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGDCRVPGS 191
>gi|256787868|ref|ZP_05526299.1| DNA repair protein RecO [Streptomyces lividans TK24]
gi|289771752|ref|ZP_06531130.1| DNA repair protein RecO [Streptomyces lividans TK24]
gi|289701951|gb|EFD69380.1| DNA repair protein RecO [Streptomyces lividans TK24]
Length = 251
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 7 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 66
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + +++ +++ + E + Y +
Sbjct: 67 KGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 126
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG+
Sbjct: 127 LVGALRTLARGEHAPNLV--LDAFLLRSLAVNGYAPTFGDCAKCGMPGPNRFFSVGSGGS 184
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D +
Sbjct: 185 VCVDCRVPGSVVPSPQALELLGALLTGDWGT 215
>gi|302518924|ref|ZP_07271266.1| DNA repair protein RecO [Streptomyces sp. SPB78]
gi|318059906|ref|ZP_07978629.1| DNA repair protein RecO [Streptomyces sp. SA3_actG]
gi|318076741|ref|ZP_07984073.1| DNA repair protein RecO [Streptomyces sp. SA3_actF]
gi|333027247|ref|ZP_08455311.1| putative DNA repair protein RecO [Streptomyces sp. Tu6071]
gi|302427819|gb|EFK99634.1| DNA repair protein RecO [Streptomyces sp. SPB78]
gi|332747099|gb|EGJ77540.1| putative DNA repair protein RecO [Streptomyces sp. Tu6071]
Length = 249
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR GR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGQGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGRHIVTDYSRYTAGTAMLETAERFTANEGEPAIQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L S + ++ LL+++ G+ C G+ + S SGGA
Sbjct: 124 LVGGLRTLAEGSHAPALV--MDAFLLRSLAVNGYAPSFDACARCGLPGPNRFFSVSSGGA 181
Query: 171 VCRSVGLPYA 180
VC +P +
Sbjct: 182 VCGDCRVPGS 191
>gi|261855984|ref|YP_003263267.1| DNA repair protein RecO [Halothiobacillus neapolitanus c2]
gi|261836453|gb|ACX96220.1| DNA repair protein RecO [Halothiobacillus neapolitanus c2]
Length = 241
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 8/229 (3%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
A +L R + + ++++E T +GR + R ++ + L+ ++ + +
Sbjct: 2 TRAYVLHTRPWRDTSLLVEWFTEDFGRLTTYQRGARNRGKKSPLRPMAFQCLHMML-VGR 60
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ + A LL G L R L +EP L+D+ L P
Sbjct: 61 GDMKTATQIESAGRAHLLQGQSLAVGFYLNELLMRALHRQEPAPVLFDIYARHLAELAGP 120
Query: 125 SVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
SV V+ E LL +G G+D T D +
Sbjct: 121 SVDFGTVVRGFERDLLAELGVGIDWQSTADTQEPIDQQAQYWLAPEEGILQHRGRGYPVA 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLREN 231
+ + + DA + A L + L ++ R
Sbjct: 181 GNILKAIADNQTLADAGDRRQARN-----LLQSLLAPHVGSAPFNSRAL 224
>gi|121635410|ref|YP_975655.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis FAM18]
gi|120867116|emb|CAM10883.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis FAM18]
gi|254671054|emb|CBA07920.1| DNA repair protein RecO [Neisseria meningitidis alpha153]
gi|319411027|emb|CBY91426.1| DNA repair protein RecO (recombination protein O) [Neisseria
meningitidis WUE 2594]
gi|325132871|gb|EGC55549.1| DNA repair protein RecO [Neisseria meningitidis M6190]
gi|325138816|gb|EGC61367.1| DNA repair protein RecO [Neisseria meningitidis ES14902]
Length = 264
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCCKA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 AYIDDLRRFEWRLLNLLGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|171704547|sp|A1KVH9|RECO_NEIMF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|6449094|gb|AAF08823.1|AF194079_10 recO [Neisseria meningitidis]
Length = 263
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 72 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|189425855|ref|YP_001953032.1| DNA repair protein RecO [Geobacter lovleyi SZ]
gi|189422114|gb|ACD96512.1| DNA repair protein RecO [Geobacter lovleyi SZ]
Length = 209
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 2/160 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSR 61
Q AIIL +YGE + I+ + T ++GR GF ++ + R L+ N + V R
Sbjct: 5 QCQAIILSTLNYGESDRIVSLFTLEHGRLRGFAKSARASRKRFGGQLEPANRLAVTLSLR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
R E + L + + PE P L+ +L+
Sbjct: 65 EDGLSRIERVEQSNCYPELRERLESLALALYACELVEALTPEGHPLPRLFRLLSTLFEHL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL 161
S E+ LL +G+ L + ++ L
Sbjct: 125 AGQSGSPTDRRFFEMNLLNILGYRPALDTAALQPLSDCLK 164
>gi|20807456|ref|NP_622627.1| recombinational DNA repair protein [Thermoanaerobacter
tengcongensis MB4]
gi|20515981|gb|AAM24231.1| Recombinational DNA repair protein [Thermoanaerobacter
tengcongensis MB4]
Length = 257
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 3/193 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + +AI+L EK+ I + TR YG+ + + + + + + N+
Sbjct: 11 MRFLKTEAIVLKSNLISEKDKIATLFTRDYGKLQAVAKGARRSKSRFVNAVRPFIVANYV 70
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
++E++++ F + R L E++ +LY L
Sbjct: 71 IFEGQNYYYIDQWELVKNFENIEKDLKKFALASYISETISRVLEEKQKNTKLYFFTKHSL 130
Query: 119 NCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ +V IF+ L L+ +G+ L C V G ++L + S GGAVC+
Sbjct: 131 EAVESLNVETSIFLFSYTLKLISLLGYMPVLDSCAVCGKKENLSYFSSSCGGAVCKDCNE 190
Query: 178 PYAEKMLVLPSFL 190
+ + L
Sbjct: 191 TCKDAKFLNKKVL 203
>gi|114048419|ref|YP_738969.1| DNA repair protein RecO [Shewanella sp. MR-7]
gi|113889861|gb|ABI43912.1| DNA repair protein RecO [Shewanella sp. MR-7]
Length = 233
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E + ++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L L+ + + L
Sbjct: 63 KN---ISQIEAAAPAVPLSGYSLYAGMYINELLMRTLSVHHNAEALFLIYHQALVGLA-A 118
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+EL LL+ +G L + + + A+
Sbjct: 119 QFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLVPELGFQFVLN-SRAKHTY 177
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ + + A + L + LQ + + L R+ F+
Sbjct: 178 QGAMLTALNDNQLLQEQFLEAKR-----LMRSMLQPLLGNKPLVSRQLFIQA 224
>gi|119370513|sp|Q9L2H3|RECO_STRCO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 248
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 4 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 KGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG+
Sbjct: 124 LVGALRTLARGEHAPTLV--LDAFLLRSLAVNGYAPTFGDCAKCGMPGPNRFFSVGSGGS 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D +
Sbjct: 182 VCVDCRVPGSVVPSPQALELLGALLTGDWGT 212
>gi|21220971|ref|NP_626750.1| DNA repair protein RecO [Streptomyces coelicolor A3(2)]
gi|6752353|emb|CAB69731.1| conserved hypothetical protein SCC121.13c [Streptomyces coelicolor
A3(2)]
Length = 251
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR +GR R + + + L+ + V V + S
Sbjct: 7 FRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 66
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
+ ++ +G + E + + +++ +++ + E + Y +
Sbjct: 67 KGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 126
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG+
Sbjct: 127 LVGALRTLARGEHAPTLV--LDAFLLRSLAVNGYAPTFGDCAKCGMPGPNRFFSVGSGGS 184
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
VC +P + L T D +
Sbjct: 185 VCVDCRVPGSVVPSPQALELLGALLTGDWGT 215
>gi|313667834|ref|YP_004048118.1| DNA repair protein (recombination protein o) [Neisseria lactamica
ST-640]
gi|313005296|emb|CBN86729.1| DNA repair protein (recombination protein o) [Neisseria lactamica
020-06]
Length = 263
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 12 FMLASSPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFGGLYVNELVLKLTAREDPVPELYDALAEVMEAVCCKA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL----PYAE 181
+ E LL +G DL + G + AV P+A
Sbjct: 129 AYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTIAAGGTYLVRPETAVFPVGKGFAVPPHAA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ L SL+ A ++T F+ L + R+
Sbjct: 189 GVVAPGQSLIDLRAGSFGSGQSLQDALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|113971181|ref|YP_734974.1| DNA repair protein RecO [Shewanella sp. MR-4]
gi|113885865|gb|ABI39917.1| DNA repair protein RecO [Shewanella sp. MR-4]
Length = 233
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E + ++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSALVNLLVDGIGRVDAIARVGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L L+ + + L
Sbjct: 63 KN---ISQIEAAAPAVPLSGYSLYAGMYINELLMRTLSVHHNAEALFLIYHQALVGLA-A 118
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+EL LL+ +G L + + + A+
Sbjct: 119 QFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLVPELGFQFVLN-SRAKHTY 177
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ + + A + L + LQ + + L R+ F+
Sbjct: 178 QGAMLTALNDNQLLQEQFLEAKR-----LMRSMLQPLLGNKPLVSRQLFIQA 224
>gi|83644634|ref|YP_433069.1| DNA repair protein RecO [Hahella chejuensis KCTC 2396]
gi|123534040|sp|Q2SL30|RECO_HAHCH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|83632677|gb|ABC28644.1| DNA repair protein RecO [Hahella chejuensis KCTC 2396]
Length = 238
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 15/236 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM-QPILQAGNLVRVNWRSRLAQN 65
A +L R Y E + I++++T G+ ++ G + LQ + V R
Sbjct: 9 AYVLHSRPYRESSYIVDLITEADGKASAVLKGGGRRKGVPGTLQPFTELEVELGGRGELK 68
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ + GL L + L E C +++D L +P
Sbjct: 69 SLIRYETTNIRYP---LAGAALYAGLYLNELLVKLLQPLEGCRKVFDAYKSSLTFLSLPQ 125
Query: 126 VI-GKIFVQIELMLLKNIGFGLDLTKCVVT---GVTQDLLWVSPKSGGAVCRSVGLPYAE 181
++E LL +GFG+D CV + + ++ + V R+ P +
Sbjct: 126 PNLEPGIRELEFALLNELGFGVDF--CVESATGDIVKNNIAYYFSLTEGVSRTP-EPCSV 182
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ SL +A +LT L+ + RE L
Sbjct: 183 VIEGHHLIAIAGRDWSVPGSLSAAKRLTRRCLD----ELLGGRPLHSRELMRSYLK 234
>gi|24372928|ref|NP_716970.1| DNA repair protein RecO [Shewanella oneidensis MR-1]
gi|24347064|gb|AAN54415.1|AE015579_4 DNA repair protein RecO [Shewanella oneidensis MR-1]
Length = 233
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E + ++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L + L+ + + L
Sbjct: 63 KN---ISQIEAAAPAVPLSGYSLYAGMYINELLMRTLSVQHNAEALFFIYHQALVGLA-A 118
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+EL LL+ +G L + + A+
Sbjct: 119 QFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHCYQLVPELGFQFVLN-SRAKHTY 177
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ + + A + L + LQ + + L R+ F+
Sbjct: 178 QGAMLTALNDNQLLQEQFLEAKR-----LMRSMLQPLLGNKPLVSRQLFIQA 224
>gi|270283981|ref|ZP_05965342.2| DNA repair protein RecO [Bifidobacterium gallicum DSM 20093]
gi|270277851|gb|EFA23705.1| DNA repair protein RecO [Bifidobacterium gallicum DSM 20093]
Length = 258
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 6/205 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ I+L GE + ++ ++TR +G+ + + + + L+ V +
Sbjct: 22 YRDEGIVLRTMKLGEADRVITLLTRDHGKVRAVAKGVRRTKSRFGARLEPFMRVDLLLNE 81
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E + + + + IV + L E +
Sbjct: 82 -GRTFDAIRQAESVSVYAGAITADYDRYRAATIIVEVINDLASTEHEPVGAQYPLLAGAL 140
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + + + +L+ I G+ L CVV G L S +SGG +C +
Sbjct: 141 NALATARHEPELISNSYVLRAIAMAGWTPRLDSCVVCGRVDQLTHFSARSGGVMCATDRT 200
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
P A ++ D +L
Sbjct: 201 PDAIRIQPAERLQLIALLAGDWAAL 225
>gi|257869128|ref|ZP_05648781.1| DNA repair protein recO [Enterococcus gallinarum EG2]
gi|257803292|gb|EEV32114.1| DNA repair protein recO [Enterococcus gallinarum EG2]
Length = 260
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 3/193 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + I+L R + EK+ ++++ T G+ + +V+ + +
Sbjct: 3 MNLVETKGILLFTRDHKEKDKLVKIFTESAGKQMFYVKGAHRKNNPLTPALLSYTEATYI 62
Query: 60 S--RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R + + S L Y + + +R LY L+
Sbjct: 63 GNIRSEGLSFLNNAKDIHSFRKIQGDIFLAGYATYLLNLADSAIDDRVYDPNLYHFLHEA 122
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L + I E+ LL+ G T C V G T+ S K G +C
Sbjct: 123 LQLMDTDNDAEIITNIFEIQLLQRFGVSPIWTHCAVCGQTEGRFDYSSKYNGVICEKHWA 182
Query: 178 PYAEKMLVLPSFL 190
+ P +
Sbjct: 183 LDDHRYHGDPRAI 195
>gi|90416442|ref|ZP_01224373.1| DNA repair protein recO (Recombination protein O) [marine gamma
proteobacterium HTCC2207]
gi|90331641|gb|EAS46869.1| DNA repair protein recO (Recombination protein O) [marine gamma
proteobacterium HTCC2207]
Length = 242
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI---LQAGNLVRV 56
M + + +L Y + ++++++ T +GR + + Q I +
Sbjct: 1 MRIEAEPGFLLHSTPYRDTSLLVDLYTANHGRVRCVAKGFRKPNKQGINRSIFPYTEHHF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+W+ R + L GL +R L E++ LY
Sbjct: 61 SWQGRGELKT---LTKADVVQAPVFLKQECLFTGLYINELFYRLLQEQDIHQYLYQQYQQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLT 149
F+ Q+E+ LL+ +G+GL L
Sbjct: 118 FMAILCGAQPDEVHLRQLEMTLLEELGYGLVLD 150
>gi|117921463|ref|YP_870655.1| DNA repair protein RecO [Shewanella sp. ANA-3]
gi|117613795|gb|ABK49249.1| DNA repair protein RecO [Shewanella sp. ANA-3]
Length = 233
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 12/232 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R Y E + ++ ++ GR R ++ ILQ + + +
Sbjct: 3 RGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSEL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ + A LS G+ L R L L+ + + L
Sbjct: 63 KN---ISQIEAAAPAVPLSGYSLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLA-A 118
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+EL LL+ +G L + + + A+
Sbjct: 119 QFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLVPELGFQFVLN-SRAKHTY 177
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ + + A + L + LQ + + L R+ F+
Sbjct: 178 QGAMLTALNDNQLLQEQFLEAKR-----LMRSMLQPLLGNKPLVSRQLFIQA 224
>gi|253996998|ref|YP_003049062.1| DNA repair protein RecO [Methylotenera mobilis JLW8]
gi|253983677|gb|ACT48535.1| DNA repair protein RecO [Methylotenera mobilis JLW8]
Length = 248
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 19/239 (7%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++++E+ +R++GR + + R + +LQA + W +L
Sbjct: 15 YVLHTYPFKETSLVVELFSREFGRVATTAKGARRPRSAMRGMLQAFQPMLATWSGKLELK 74
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + C LL + G L R LP +P L+ L
Sbjct: 75 TLH---GLEWNGCLLLLQGEALMCGFYLNELLLRLLPREDPHEALFAYYAETLKALASEQ 131
Query: 126 VIGKIFVQIELMLLKNIGFG--LDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + EL L+ +G+ L L V Q + G R Y +
Sbjct: 132 HLATTLRRFELKFLQELGYAIPLQLDVNNTPIVMQQAYRYEAEHGAYPIRCASARYETRY 191
Query: 184 LVL------PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ D + + + Q L +Y L H + R+ +
Sbjct: 192 ENGVQLSGKTLIDMLHDDYSDEQTQQQSKQ-----LMRYLLAHYLGDKPLHTRQLLIEL 245
>gi|85860059|ref|YP_462261.1| DNA repair protein [Syntrophus aciditrophicus SB]
gi|85723150|gb|ABC78093.1| DNA repair protein [Syntrophus aciditrophicus SB]
Length = 277
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 3/159 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ + +L SY + ++I+ TR +G+ R + R + +L+ + + +
Sbjct: 26 KTEGFVLKTLSYSDSDLIVTFYTRNFGKLTAIARGARKSRKRFVNVLEPFCCSSLLFSRK 85
Query: 62 LAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L + + ++ S L I + F E +P EL+++L FL
Sbjct: 86 QRDQLAWLESCQVINEFPEIRKSLDRTLLASYLIDLVDHFSIEEKPGRELFELLRSFLLL 145
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ ++ E+ LK G+ L C++ +
Sbjct: 146 IEEGDTSERLLRFFEIRHLKLTGYAPALDCCMICKAPLN 184
>gi|257886867|ref|ZP_05666520.1| recombination protein O [Enterococcus faecium 1,141,733]
gi|293568653|ref|ZP_06679968.1| DNA repair protein RecO [Enterococcus faecium E1071]
gi|293571623|ref|ZP_06682644.1| DNA repair protein RecO [Enterococcus faecium E980]
gi|257822921|gb|EEV49853.1| recombination protein O [Enterococcus faecium 1,141,733]
gi|291588613|gb|EFF20446.1| DNA repair protein RecO [Enterococcus faecium E1071]
gi|291608293|gb|EFF37594.1| DNA repair protein RecO [Enterococcus faecium E980]
Length = 272
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRHIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICERHWSMDDH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|56478592|ref|YP_160181.1| DNA repair protein RecO [Aromatoleum aromaticum EbN1]
gi|62287380|sp|Q5P084|RECO_AZOSE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56314635|emb|CAI09280.1| DNA repair protein recO (Recombination protein O) [Aromatoleum
aromaticum EbN1]
Length = 239
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 6/148 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
Q A +L + E ++++E+ +R +GR + + ++ ++ A + ++W
Sbjct: 9 QQPAFVLHTYPWRETSLVVEIFSRDHGRVALVAKGARRPMSALRGVIMAFQPLLMDWSGG 68
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
LL+ + G L R + L++ L+
Sbjct: 69 GEVKT---LVRAEWRGGQPLLTGRALMCGYYLNELLVRLTAREDAHPALFEAYADALSQL 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLT 149
V I + EL LL+ +G+G+ L
Sbjct: 126 GRGDVAP-ILRRFELTLLRELGYGIGLD 152
>gi|269218573|ref|ZP_06162427.1| DNA repair protein RecO [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211684|gb|EEZ78024.1| DNA repair protein RecO [Actinomyces sp. oral taxon 848 str. F0332]
Length = 243
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 79/228 (34%), Gaps = 14/228 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+AI+L GE + I+ +R++G+ G + + + + L+ ++V +
Sbjct: 4 YRDEAIVLRTHDLGEADRIITFFSRRHGKMRGVAKGVRRTKSRFGARLEPFSMVDLQLYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ L + + I + L E + L +
Sbjct: 64 GRTLDV-VTEAATLNPYGRSIGRDYDAYTCACVIAEVADKLAAIEEEPDQAHYLLLHGAI 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
H + + + + ++ +L+ + G+GL L +C V G + L +SGG VC
Sbjct: 123 HALATGAHRPALVVDSYILRAMALHGWGLSLYECAVCGRGEGLAAFHLQSGGVVCSDCAP 182
Query: 178 PYAEKMLVLPSFLWKE--------EQTIDADSLKSAFQLTDYFLNKYA 217
A L ++A + +L +
Sbjct: 183 RAAAYPAPETIELLGSLVSGRWDVADAAAEHDRRAASAIVGAYLQWHV 230
>gi|257898047|ref|ZP_05677700.1| recombination protein O [Enterococcus faecium Com15]
gi|257835959|gb|EEV61033.1| recombination protein O [Enterococcus faecium Com15]
Length = 270
Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRHIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICERHWSMDDH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|308069927|ref|YP_003871532.1| DNA repair protein RecO [Paenibacillus polymyxa E681]
gi|305859206|gb|ADM70994.1| DNA repair protein recO (Recombination protein O) [Paenibacillus
polymyxa E681]
Length = 250
Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 4/191 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ + I++ YGE N I+ + T G+ VR + + + + Q +
Sbjct: 1 MLYRVEGIVIRSMDYGEGNKIITLCTESGGKAGVLVRGAKKSKSRHAALTQPFTYGEFVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R E+++SH + Y + L R L + E + L L
Sbjct: 61 F-RNTGLGTLNAGEIIQSHHTLREDITKAAYASYACELLDRVLQDEETGAFWFKQLKACL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGL 177
+ + E +L+ G+ L C+ +G D G V
Sbjct: 120 EALESGKDPLIVMSIYEFKILQAAGYAPQLDACISSGQQCADEDMFVSPRLGGVLCRSYK 179
Query: 178 PYAEKMLVLPS 188
+ L +
Sbjct: 180 HFDPAALSVTP 190
>gi|294787447|ref|ZP_06752700.1| DNA repair protein RecO [Parascardovia denticolens F0305]
gi|315226983|ref|ZP_07868770.1| recombinational DNA repair protein (RecF pathway) [Parascardovia
denticolens DSM 10105]
gi|294484803|gb|EFG32438.1| DNA repair protein RecO [Parascardovia denticolens F0305]
gi|315119433|gb|EFT82566.1| recombinational DNA repair protein (RecF pathway) [Parascardovia
denticolens DSM 10105]
Length = 248
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 8/210 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D ++L GE + I+ ++T ++G+ R + R + L+ +
Sbjct: 4 YRDQGLVLRAIKLGETDRIITILTSRHGKIRAVARGVRRTRSRFGSRLEPFMRDDLLIAQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFL 118
+ + V+ ++ K+++ IV + + + +
Sbjct: 64 GRKELDTVSQAVVISAYAPKIVADYEAYLSASVIVEAVDKVVSDLREGSESAHRQYLLAV 123
Query: 119 NCHKIPSVIGKIFVQIELMLL----KNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + +E L G+ L C+V G DL + S +SGG +C+
Sbjct: 124 GALAALAAGKRPPALVENSFLLRSVSLAGWTPRLDSCLVCGRQTDLTYFSVESGGVMCKD 183
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKS 204
+P + ++ F + D +L++
Sbjct: 184 DHVPGSRRLSPQALFQLRALLMGDWKALEA 213
>gi|325136835|gb|EGC59433.1| DNA repair protein RecO [Neisseria meningitidis M0579]
Length = 248
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V V+W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSVSWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|126667177|ref|ZP_01738151.1| DNA repair protein RecO [Marinobacter sp. ELB17]
gi|126628333|gb|EAZ98956.1| DNA repair protein RecO [Marinobacter sp. ELB17]
Length = 239
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 15/239 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
Q+ ++ R + E ++ ++V T YGR R + + + LQ+ + ++W
Sbjct: 6 IQEPGYVIHRRPWRETSLQVDVFTLNYGRVDLIARGASTSKSPLKAQLQSFQPLLLDWVG 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R H L S G L R LP +P L+ +
Sbjct: 66 RGGLKTLTQVDVR---HAPVLAQSQALFSGFYLNELLQRILPAADPYPLLFAAYLDAMAE 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDL----TKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + + E L +G+ C Q + + G
Sbjct: 123 LAAAAELEPVLRRFERSLALALGYDFAWDLATDSCA---PVQSGWFYGYHPQQGIVERPG 179
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
K L + L + + + L Y LQ +H R+ F+
Sbjct: 180 ADVRVKKLRGDALLALAANDYSEIEARRSAKRVMRALVDYLLQGRPLH---SRQLFIQS 235
>gi|23099405|ref|NP_692871.1| DNA repair protein RecO [Oceanobacillus iheyensis HTE831]
gi|42559473|sp|Q8CXD4|RECO_OCEIH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|22777634|dbj|BAC13906.1| DNA repair protein (recombination protein O) [Oceanobacillus
iheyensis HTE831]
Length = 258
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 1/177 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + D II+ + YGE + ++ + + + G+ + + + + + +
Sbjct: 1 MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFV 60
Query: 61 R-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + EVL+S Y + L +E LY+ L
Sbjct: 61 YIGSGLSTIQQGEVLDSFRIIREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLL 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + EL L K GF L +C G + L S + GG +C+
Sbjct: 121 WINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEGLSKFSIREGGMLCQQCA 177
>gi|148549492|ref|YP_001269594.1| DNA repair protein RecO [Pseudomonas putida F1]
gi|166221906|sp|A5W8F0|RECO_PSEP1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148513550|gb|ABQ80410.1| DNA replication and repair protein RecO [Pseudomonas putida F1]
Length = 227
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R + + +++ L+ + R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRMRAVLRRARG-KGGSLVRPFVLLELELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ S A L GL L R LP P +++ + L
Sbjct: 66 N---VGRMDSSGIAAWLHGDALFSGLYLNELLMRLLPAEAPFPAIFEHYTLTLQALAEGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L++ V + A V L
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLSQDVNDQPIAADGLYRLR-VDAGLERVELLQPGLFRG 181
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ E +L +A + L + AL ++ L RE F +
Sbjct: 182 IELLALAEADWDAPGALLAAKR-----LMRQALAVHLGAKPLVSRELFRKR 227
>gi|119361493|sp|Q2LVI1|RECO_SYNAS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 259
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 3/159 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ + +L SY + ++I+ TR +G+ R + R + +L+ + + +
Sbjct: 8 KTEGFVLKTLSYSDSDLIVTFYTRNFGKLTAIARGARKSRKRFVNVLEPFCCSSLLFSRK 67
Query: 62 LAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L + + ++ S L I + F E +P EL+++L FL
Sbjct: 68 QRDQLAWLESCQVINEFPEIRKSLDRTLLASYLIDLVDHFSIEEKPGRELFELLRSFLLL 127
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ ++ E+ LK G+ L C++ +
Sbjct: 128 IEEGDTSERLLRFFEIRHLKLTGYAPALDCCMICKAPLN 166
>gi|26988168|ref|NP_743593.1| DNA repair protein RecO [Pseudomonas putida KT2440]
gi|38258497|sp|Q88MY3|RECO_PSEPK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|24982902|gb|AAN67057.1|AE016334_6 DNA repair protein RecO [Pseudomonas putida KT2440]
Length = 227
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R +S + +++ + V R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRMRAVLRRARS-KGGSLVRPFVSLEVELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L GL L R LP P +++ + L
Sbjct: 66 N---VSRMDSTGIAAWLHGDALFSGLYLNELLMRLLPAEAPFPTIFEHYTLTLQALAEGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L + V + A V L
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLNQDVNDQPIAADGLYRLR-VDAGLERVELLQPGLFRG 181
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
+ E +L +A + L + AL ++ L RE F +
Sbjct: 182 IELLALAEADWDAPGALLAAKR-----LMRQALAVHLGAKPLVSRELFRKR 227
>gi|254805524|ref|YP_003083745.1| DNA repair protein RecO [Neisseria meningitidis alpha14]
gi|254669066|emb|CBA07573.1| DNA repair protein RecO [Neisseria meningitidis alpha14]
Length = 248
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 71/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWIGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|254392569|ref|ZP_05007746.1| DNA repair protein recO [Streptomyces clavuligerus ATCC 27064]
gi|294812537|ref|ZP_06771180.1| DNA repair protein recO [Streptomyces clavuligerus ATCC 27064]
gi|326441010|ref|ZP_08215744.1| DNA repair protein RecO [Streptomyces clavuligerus ATCC 27064]
gi|197706233|gb|EDY52045.1| DNA repair protein recO [Streptomyces clavuligerus ATCC 27064]
gi|294325136|gb|EFG06779.1| DNA repair protein recO [Streptomyces clavuligerus ATCC 27064]
Length = 248
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSRFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRALSRGEHAPHLV--LDAFLLRSLAVNGYAPSFDACARCGLPGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGDCRVPGS 191
>gi|284990196|ref|YP_003408750.1| DNA repair protein RecO [Geodermatophilus obscurus DSM 43160]
gi|284063441|gb|ADB74379.1| DNA repair protein RecO [Geodermatophilus obscurus DSM 43160]
Length = 263
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ I+L + GE + I+ V+TR++G+ + + + + L+ + V + + +
Sbjct: 9 YRDEGIVLRTQKLGEADRIVTVLTRRHGKVRAVAKGVRRTKSKFGARLEPFSHVDLQFYT 68
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + ++ +++ +++ L E L L +
Sbjct: 69 GRTLDIVSQAES-IRAYGQSIVTDYPAYTAGTAVLETADRLTAEEKEPSLRLFLLVIGAL 127
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ L C G S +GG VC
Sbjct: 128 RALSERTHPAGLVLDAFLLRAMSVAGWEPALGGCARCGEEGPHRHFSVPAGGMVCPPCRP 187
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
+ L T D D
Sbjct: 188 TGSAMPNPATVELLDALLTGDWD 210
>gi|227551967|ref|ZP_03982016.1| recombination protein RecO [Enterococcus faecium TX1330]
gi|257895441|ref|ZP_05675094.1| recombination protein O [Enterococcus faecium Com12]
gi|293378308|ref|ZP_06624477.1| DNA repair protein RecO [Enterococcus faecium PC4.1]
gi|227178872|gb|EEI59844.1| recombination protein RecO [Enterococcus faecium TX1330]
gi|257832006|gb|EEV58427.1| recombination protein O [Enterococcus faecium Com12]
gi|292643172|gb|EFF61313.1| DNA repair protein RecO [Enterococcus faecium PC4.1]
Length = 272
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRHIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGITPIWTHCVVCGETKGKFDYSSKYGGVICERHWSMDDH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|90407381|ref|ZP_01215566.1| DNA repair protein RecO [Psychromonas sp. CNPT3]
gi|90311532|gb|EAS39632.1| DNA repair protein RecO [Psychromonas sp. CNPT3]
Length = 240
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 16/234 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
A IL R Y E +++L++ + G+ + G+S + Q L++ + R +
Sbjct: 8 AFILHRRPYRETSLLLDLFCQDIGKVSLIYKGGRSSTRLRRGCAQPFTLLQATYFGRSSL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ + L + L+R L C L+ L
Sbjct: 68 KTVKSIEAKTQVVP---LVGERLYMAMYVNELLYRLLQAETACDGLFSCYQDTLLALAGA 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVV-TGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K EL LL+++G+G++ T+ + + + +
Sbjct: 125 KDNQHAQIALRNFELTLLESLGYGVNFTQDIYSDELIEPGFDYQYLQQQGFFAKQAIHQK 184
Query: 181 EKMLVLPSFLWKEEQTIDADSLKS-AFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + E+ S A + + AL H + + R F
Sbjct: 185 QHVYSGLQIQALAERNFSNAEFLSPAKRFC-----RQALAHLLGNKPLHSRRLF 233
>gi|257882781|ref|ZP_05662434.1| recombination protein O [Enterococcus faecium 1,231,502]
gi|257884089|ref|ZP_05663742.1| recombination protein O [Enterococcus faecium 1,231,501]
gi|294622999|ref|ZP_06701888.1| DNA repair protein RecO [Enterococcus faecium U0317]
gi|257818439|gb|EEV45767.1| recombination protein O [Enterococcus faecium 1,231,502]
gi|257819927|gb|EEV47075.1| recombination protein O [Enterococcus faecium 1,231,501]
gi|291597555|gb|EFF28717.1| DNA repair protein RecO [Enterococcus faecium U0317]
Length = 270
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRNIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICERHWSMDDH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|74318102|ref|YP_315842.1| DNA repair protein RecO [Thiobacillus denitrificans ATCC 25259]
gi|90103526|sp|Q3SH52|RECO_THIDA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|74057597|gb|AAZ98037.1| Recombination protein O, RecO [Thiobacillus denitrificans ATCC
25259]
Length = 256
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 14/186 (7%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ IL + E +++ EV TR +GR R + + ++Q + + ++W +
Sbjct: 17 NESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALRGLMQPFSPLLLSWFGK 76
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ G L R L + LYD L+
Sbjct: 77 ADLKTLHAAEWQGGLVAP---QGRALMCGFYLNELLLRLLARGDAHERLYDRYVETLDQL 133
Query: 122 ---------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + +I + E LL IG+G + +
Sbjct: 134 ARSAAASDAERATAFERILRRFEKNLLSEIGYGATFDVEAGGAAIEPGAAYVFQPERGAL 193
Query: 173 RSVGLP 178
R+ G P
Sbjct: 194 RAAGQP 199
>gi|297194472|ref|ZP_06911870.1| DNA repair protein recO [Streptomyces pristinaespiralis ATCC 25486]
gi|197718717|gb|EDY62625.1| DNA repair protein recO [Streptomyces pristinaespiralis ATCC 25486]
Length = 248
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFADHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRSLSRGEHAPHLV--LDAFLLRSLAVNGYAPSFDDCARCGLPGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYA 180
+C +P +
Sbjct: 182 ICGDCRVPGS 191
>gi|325128807|gb|EGC51667.1| DNA repair protein RecO [Neisseria meningitidis N1568]
Length = 264
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWGGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|325134814|gb|EGC57450.1| DNA repair protein RecO [Neisseria meningitidis M13399]
gi|325144985|gb|EGC67268.1| DNA repair protein RecO [Neisseria meningitidis M01-240013]
gi|325205513|gb|ADZ00966.1| DNA repair protein RecO [Neisseria meningitidis M04-240196]
Length = 264
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 73 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|239979354|ref|ZP_04701878.1| DNA repair protein RecO [Streptomyces albus J1074]
gi|291451229|ref|ZP_06590619.1| DNA repair protein RecO [Streptomyces albus J1074]
gi|291354178|gb|EFE81080.1| DNA repair protein RecO [Streptomyces albus J1074]
Length = 248
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ +TR+YGR R + + + L+ + V V + +
Sbjct: 4 FRDDGIVLRTQKLGEADRIITFLTRRYGRVRAVARGVRRTKSKFGARLEPFSHVDVQYFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + ++ + +++ +++ + E + Y +
Sbjct: 64 RGSELIGRGLPLCTQTETIAAYGSGIVTDYDRYTAGTAMLETAERFTDHEGQPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L ++ ++ LL+++ G+ L C G+ + S +GG+
Sbjct: 124 LVGGLRTLARGEHAPRLV--LDAFLLRSLAVNGYAPSLGDCARCGMPGPNRFFSVAAGGS 181
Query: 171 VCRSVGLPYA 180
VC +P +
Sbjct: 182 VCGECRVPGS 191
>gi|262281673|ref|ZP_06059442.1| DNA repair protein recO [Streptococcus sp. 2_1_36FAA]
gi|262262127|gb|EEY80824.1| DNA repair protein recO [Streptococcus sp. 2_1_36FAA]
Length = 259
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 77/205 (37%), Gaps = 3/205 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M A++L R++ E + ++++ T Q G+ + FV++ + ++ P++Q L + +
Sbjct: 1 MQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ ++ + Y +P+ +P L+ L L
Sbjct: 61 VNDDGLSYIQDYQDVQPFTRINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L G L+ +CV T S K G +C
Sbjct: 121 LMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTGLPFDFSFKFSGVLCPDHYRED 180
Query: 180 AEKMLVLP--SFLWKEEQTIDADSL 202
+ + P FL + Q ++ +L
Sbjct: 181 DRRCHLHPNIPFLLDQFQAVEYSTL 205
>gi|294626961|ref|ZP_06705552.1| DNA repair protein RecO [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598821|gb|EFF42967.1| DNA repair protein RecO [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 240
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R Q R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L+ L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLAGDTMLAGFYISELLLRLAPRNDPVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + + E +LK +GF DL
Sbjct: 118 VRSHLASDLPLAWGLRRFERDVLKGLGFAFDLQHDSDGQPIDPAARY 164
>gi|312959175|ref|ZP_07773694.1| DNA repair protein [Pseudomonas fluorescens WH6]
gi|311286945|gb|EFQ65507.1| DNA repair protein [Pseudomonas fluorescens WH6]
Length = 228
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 12/228 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R +
Sbjct: 9 PAYVLHSRAYRETSALVDFLTP-QGRLRAVLRSARG-KAGTLARPFVALDVEFRGKGELK 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L+ GL L R LP +P ++D L
Sbjct: 67 N---VGRLESVGTSAWLNGDALFSGLYLNELLIRLLPAEDPHPAVFDHYAATLLALAEGR 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL ++G+G +L + + + R L +
Sbjct: 124 PLEPLLRAFEWRLLDDLGYGFELANDLHGEPIAADGMYRLQVDAGLERVHLLQ--PGLFQ 181
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENF 232
L E A SA + L + AL ++ L RE F
Sbjct: 182 GTELLAMSEADWSAPGALSAAKR----LMRQALAVHLGGRPLVSRELF 225
>gi|229588603|ref|YP_002870722.1| DNA repair protein RecO [Pseudomonas fluorescens SBW25]
gi|229360469|emb|CAY47326.1| DNA repair protein [Pseudomonas fluorescens SBW25]
Length = 229
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A +L R+Y E + +++ +T GR +R+ + + + + + V +R +
Sbjct: 11 AYVLHSRAYRETSALVDFLTP-QGRLRAVLRSARG-KAGTLARPFVALDVEFRGKGELKN 68
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + L+ GL L R LP +P ++D L
Sbjct: 69 ---VGRLESVGTSAWLNGEALFSGLYLNELLIRLLPAEDPHPAVFDHYAATLIALAEGRP 125
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ + E LL ++G+G +L + + + R L +
Sbjct: 126 LEPLLRAFEWRLLDDLGYGFELNNDLHGDPIAADGMYRLQVDAGLERVYLLQ--PGLFQG 183
Query: 187 PSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENF 232
L E A SA + L + AL ++ L RE F
Sbjct: 184 TELLAMSEADWTAPGALSAAKR----LMRQALAVHLGGRPLVSRELF 226
>gi|157150562|ref|YP_001449353.1| DNA repair protein RecO [Streptococcus gordonii str. Challis
substr. CH1]
gi|189039774|sp|A8AU93|RECO_STRGC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|157075356|gb|ABV10039.1| DNA repair protein RecO [Streptococcus gordonii str. Challis
substr. CH1]
Length = 260
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 77/205 (37%), Gaps = 3/205 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M A++L R++ E + ++++ T Q G+ + FV++ + ++ P++Q L + +
Sbjct: 2 MQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMK 61
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ ++ + Y +P+ +P L+ L L
Sbjct: 62 VNDDGLSYIQDYQDVQPFTRINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLE 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L G L+ +CV T S K G +C
Sbjct: 122 LMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTGLPFDFSFKFSGVLCPDHYRED 181
Query: 180 AEKMLVLP--SFLWKEEQTIDADSL 202
+ + P FL + Q ++ +L
Sbjct: 182 DRRCHLHPNIPFLLDQFQAVEYSTL 206
>gi|78485081|ref|YP_391006.1| DNA repair protein RecO [Thiomicrospira crunogena XCL-2]
gi|78363367|gb|ABB41332.1| DNA replication and repair protein RecO [Thiomicrospira crunogena
XCL-2]
Length = 246
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 20/245 (8%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR-----MQPILQAGNLVRVN 57
+ A +L R Y E ++++ T ++G+ ++ +S Q LQ + ++
Sbjct: 5 IEQQAFVLHRRPYRETSLLVTFFTPEFGKQNAVIKGVRSSSKTAQAKQAWLQPFQGLNIS 64
Query: 58 WRSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
WR + ++ LE + + L + GL L+R L L+
Sbjct: 65 WRDKANRSSDLVSLRQLEPNHVRFPLGGEGSICGLYLNELLYRLLYPSLEVSGLFGEYQQ 124
Query: 117 FLNCH---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
L + + Q E LL +G+ Q +
Sbjct: 125 ALYDLALAEDRYQQAWVLRQFEFALLSELGYAFQTEVDYYQQPIQADKKYLFHLELGLFP 184
Query: 174 SVGLPYA-----EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
+ ++ L ++ L +L +Y L + +
Sbjct: 185 EPFSQISLDQNQGIVISGQCLLLFAQKAYCESCLTEWKRLF-----RYVLTPYLGQKPIQ 239
Query: 229 -RENF 232
R F
Sbjct: 240 TRSLF 244
>gi|121996842|ref|YP_001001629.1| DNA repair protein RecO [Halorhodospira halophila SL1]
gi|171769496|sp|A1WT15|RECO_HALHL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|121588247|gb|ABM60827.1| DNA replication and repair protein RecO [Halorhodospira halophila
SL1]
Length = 234
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 4/173 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R++ E + ++E+ +++YGR + L+ ++V+WR R
Sbjct: 8 PAWVLHRRAFRESSTLVELFSQEYGRIGAVANGVRRRGWSGQLEPFIPLQVSWRGRGDLK 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + L G L +P ++ + ++C
Sbjct: 68 TLTTVDQAGRGYA---LRGGALACGFYMAEVLLALTRREDPHPRTWERYAVAVDCLA-TD 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL LL+ G+GL+L + V R+
Sbjct: 124 DAEPALRRFELALLEESGYGLELEQDVHGEPVVAQARYRYSPERGADRAGTGE 176
>gi|294629249|ref|ZP_06707809.1| DNA repair protein RecO [Streptomyces sp. e14]
gi|292832582|gb|EFF90931.1| DNA repair protein RecO [Streptomyces sp. e14]
Length = 248
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + +++ +++ + E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S SGG+
Sbjct: 124 LVGALRTLARGEHAPHLV--LDAFLLRSLAVNGYAPSFGDCARCGMPGPNRFFSVASGGS 181
Query: 171 VCRSVGLPYA 180
VC P +
Sbjct: 182 VCVDCRAPGS 191
>gi|257893052|ref|ZP_05672705.1| recombination protein O [Enterococcus faecium 1,231,408]
gi|260559559|ref|ZP_05831739.1| recombination protein O [Enterococcus faecium C68]
gi|293559429|ref|ZP_06675968.1| DNA repair protein RecO [Enterococcus faecium E1162]
gi|314939539|ref|ZP_07846767.1| DNA repair protein RecO [Enterococcus faecium TX0133a04]
gi|314942706|ref|ZP_07849532.1| DNA repair protein RecO [Enterococcus faecium TX0133C]
gi|314948956|ref|ZP_07852322.1| DNA repair protein RecO [Enterococcus faecium TX0082]
gi|314953303|ref|ZP_07856231.1| DNA repair protein RecO [Enterococcus faecium TX0133A]
gi|314993383|ref|ZP_07858748.1| DNA repair protein RecO [Enterococcus faecium TX0133B]
gi|314995733|ref|ZP_07860822.1| DNA repair protein RecO [Enterococcus faecium TX0133a01]
gi|257829431|gb|EEV56038.1| recombination protein O [Enterococcus faecium 1,231,408]
gi|260074227|gb|EEW62549.1| recombination protein O [Enterococcus faecium C68]
gi|291606643|gb|EFF36038.1| DNA repair protein RecO [Enterococcus faecium E1162]
gi|313590005|gb|EFR68850.1| DNA repair protein RecO [Enterococcus faecium TX0133a01]
gi|313592048|gb|EFR70893.1| DNA repair protein RecO [Enterococcus faecium TX0133B]
gi|313594646|gb|EFR73491.1| DNA repair protein RecO [Enterococcus faecium TX0133A]
gi|313598571|gb|EFR77416.1| DNA repair protein RecO [Enterococcus faecium TX0133C]
gi|313641175|gb|EFS05755.1| DNA repair protein RecO [Enterococcus faecium TX0133a04]
gi|313644615|gb|EFS09195.1| DNA repair protein RecO [Enterococcus faecium TX0082]
Length = 270
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRNIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S KSGG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKSGGVICEKHWPMDEH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|256961297|ref|ZP_05565468.1| recombination protein O [Enterococcus faecalis Merz96]
gi|293383581|ref|ZP_06629491.1| DNA repair protein RecO [Enterococcus faecalis R712]
gi|293387306|ref|ZP_06631862.1| DNA repair protein RecO [Enterococcus faecalis S613]
gi|312906131|ref|ZP_07765143.1| DNA repair protein RecO [Enterococcus faecalis DAPTO 512]
gi|312909477|ref|ZP_07768332.1| DNA repair protein RecO [Enterococcus faecalis DAPTO 516]
gi|256951793|gb|EEU68425.1| recombination protein O [Enterococcus faecalis Merz96]
gi|291079093|gb|EFE16457.1| DNA repair protein RecO [Enterococcus faecalis R712]
gi|291083204|gb|EFE20167.1| DNA repair protein RecO [Enterococcus faecalis S613]
gi|310627777|gb|EFQ11060.1| DNA repair protein RecO [Enterococcus faecalis DAPTO 512]
gi|311290150|gb|EFQ68706.1| DNA repair protein RecO [Enterococcus faecalis DAPTO 516]
Length = 264
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWYLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|315150152|gb|EFT94168.1| DNA repair protein RecO [Enterococcus faecalis TX0012]
Length = 264
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLMPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|315032902|gb|EFT44834.1| DNA repair protein RecO [Enterococcus faecalis TX0017]
Length = 264
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKGVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFESQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|294791413|ref|ZP_06756570.1| DNA repair protein RecO [Scardovia inopinata F0304]
gi|294457884|gb|EFG26238.1| DNA repair protein RecO [Scardovia inopinata F0304]
Length = 244
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 8/210 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D ++L GE + I+ ++T +G+ + + + L+ +
Sbjct: 4 YRDQGVVLRTIKLGEADRIITILTAHHGKIRAVAHGVRRAKSRFGSRLEPFMWDDLLIAQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDMLNIFL 118
+ V+ + + ++ + IV + + + +
Sbjct: 64 GRHDLDTISQAVVISPYASLIVGTYEAYLSASVIVETVDKMITDLRQTGISQRQQYTLVI 123
Query: 119 NCHKIPSVIGKIFVQIELML----LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ IE L G+ L CVV G + + S ++GGA+C +
Sbjct: 124 GALAALAEGKHSPQMIENSYVLRALSLAGWTPRLDSCVVCGRRDQVEYFSTEAGGAMCLT 183
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKS 204
LP + K D +SL
Sbjct: 184 HRLPRSHKASGQTFSQLGLLLAGDWESLDQ 213
>gi|310643036|ref|YP_003947794.1| DNA repair protein reco [Paenibacillus polymyxa SC2]
gi|309247986|gb|ADO57553.1| DNA repair protein RecO [Paenibacillus polymyxa SC2]
Length = 246
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 4/186 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
+ I++ YGE N I+ + T G+ VR + + + + Q + R
Sbjct: 2 EGIVIRSMDYGEGNKIITLCTESGGKVGVLVRGAKKSKSRHAALTQPFTYGEFVFF-RNT 60
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E+++SH + Y + L R L + E + L L +
Sbjct: 61 GLGTLNAGEIIQSHHTLREDITKAAYASYACELLDRVLQDEETGAFWFKQLKACLEALES 120
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E +L+ G+ L C+ +G D G V +
Sbjct: 121 GKDPLIVMSIYEFKILQAAGYAPQLDACISSGQQCADEDMFISPRLGGVLCRGYKHFDPA 180
Query: 183 MLVLPS 188
L +
Sbjct: 181 ALSVAP 186
>gi|257082013|ref|ZP_05576374.1| recombination protein O [Enterococcus faecalis E1Sol]
gi|257084564|ref|ZP_05578925.1| recombination protein O [Enterococcus faecalis Fly1]
gi|257087440|ref|ZP_05581801.1| recombination protein O [Enterococcus faecalis D6]
gi|256990043|gb|EEU77345.1| recombination protein O [Enterococcus faecalis E1Sol]
gi|256992594|gb|EEU79896.1| recombination protein O [Enterococcus faecalis Fly1]
gi|256995470|gb|EEU82772.1| recombination protein O [Enterococcus faecalis D6]
gi|315025404|gb|EFT37336.1| DNA repair protein RecO [Enterococcus faecalis TX2137]
gi|315161674|gb|EFU05691.1| DNA repair protein RecO [Enterococcus faecalis TX0645]
gi|315173672|gb|EFU17689.1| DNA repair protein RecO [Enterococcus faecalis TX1346]
Length = 264
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|189499187|ref|YP_001958657.1| DNA repair protein RecO [Chlorobium phaeobacteroides BS1]
gi|238692226|sp|B3EKJ8|RECO_CHLPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189494628|gb|ACE03176.1| DNA repair protein RecO [Chlorobium phaeobacteroides BS1]
Length = 261
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 22/259 (8%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L + E++ I + TR +GR ++ G++ + + + G+L+ V
Sbjct: 1 MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ-SIVPLFRFLPEREPCLELYDMLNIF 117
+R ++L + S + I L E + L++ L
Sbjct: 61 YNRSNRDLQLVSEARIIRSPMTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERT 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCV----------VTGVTQDLLWVSPK 166
L P V L L+ GF + +CV G DL
Sbjct: 121 LEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGKSILPMLQEGSADDLCLTYDP 180
Query: 167 SGGAVCRSVG--LPYAEKMLVLPSFLWKEEQTIDADSL------KSAFQLTDYFLNKYAL 218
G ++ P +++ V L + +D S+ +L L Y
Sbjct: 181 GGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS 240
Query: 219 QHNIIHCHLLRENFLGKLL 237
HN + + ++L
Sbjct: 241 LHNNYNPSSKNRRIISRIL 259
>gi|307287712|ref|ZP_07567755.1| DNA repair protein RecO [Enterococcus faecalis TX0109]
gi|306501450|gb|EFM70753.1| DNA repair protein RecO [Enterococcus faecalis TX0109]
gi|315164811|gb|EFU08828.1| DNA repair protein RecO [Enterococcus faecalis TX1302]
Length = 262
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLMPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|145296238|ref|YP_001139059.1| DNA repair protein RecO [Corynebacterium glutamicum R]
gi|140846158|dbj|BAF55157.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 242
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 3/182 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A+++ +GE + I+ ++TR +G G + + + + LQ + V
Sbjct: 6 FRDRALVVKTHDFGEADRIIVLLTRDHGIVRGVAKGVRRSKSRFGSRLQLFVELDVQLYP 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + + ++ +I+ + L E L++ L
Sbjct: 66 GRKLST-ISGADTVGYYASGIIEDFTRYSCASAILEIATHLAGLENDPHLFEETTRALKN 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + L + + G+ L C G P GGAVC P +
Sbjct: 125 IQDSPEPILNLDEFMLRAMNHAGWAPSLFDCAACGRPGPHNAFHPGIGGAVCLYCRPPGS 184
Query: 181 EK 182
+
Sbjct: 185 AE 186
>gi|21230732|ref|NP_636649.1| DNA repair protein RecO [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769272|ref|YP_244034.1| DNA repair protein RecO [Xanthomonas campestris pv. campestris str.
8004]
gi|188992423|ref|YP_001904433.1| DNA repair protein RecO [Xanthomonas campestris pv. campestris str.
B100]
gi|42559486|sp|Q8PB50|RECO_XANCP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|81304769|sp|Q4USF9|RECO_XANC8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229485575|sp|B0RX25|RECO_XANCB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|21112326|gb|AAM40573.1| DNA repair protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574604|gb|AAY50014.1| DNA repair protein [Xanthomonas campestris pv. campestris str.
8004]
gi|167734183|emb|CAP52391.1| Putative DNA repair protein [Xanthomonas campestris pv. campestris]
Length = 241
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L R++ E ++++EV+T Q+GR R R + LQ L++
Sbjct: 1 MLIEHERGFVLHARAWRETSLLVEVLTEQHGRVGLLARGVHGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + A L L G L R P P EL+D
Sbjct: 61 TAVQRGELAQLRQAEAID---TAPRLLGEAMLAGFYISELLLRLAPRHAPVPELFDCYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + Q E +L +GFG DL
Sbjct: 118 ARAHLASGAALAWGLRQFERDVLDGLGFGFDLQHDSDGQPIDPAARY 164
>gi|256617034|ref|ZP_05473880.1| recombination protein O [Enterococcus faecalis ATCC 4200]
gi|256853770|ref|ZP_05559135.1| DNA repair protein recO [Enterococcus faecalis T8]
gi|307277157|ref|ZP_07558261.1| DNA repair protein RecO [Enterococcus faecalis TX2134]
gi|307290539|ref|ZP_07570451.1| DNA repair protein RecO [Enterococcus faecalis TX0411]
gi|256596561|gb|EEU15737.1| recombination protein O [Enterococcus faecalis ATCC 4200]
gi|256710713|gb|EEU25756.1| DNA repair protein recO [Enterococcus faecalis T8]
gi|295113463|emb|CBL32100.1| DNA repair protein RecO [Enterococcus sp. 7L76]
gi|306498394|gb|EFM67899.1| DNA repair protein RecO [Enterococcus faecalis TX0411]
gi|306506087|gb|EFM75253.1| DNA repair protein RecO [Enterococcus faecalis TX2134]
gi|315030212|gb|EFT42144.1| DNA repair protein RecO [Enterococcus faecalis TX4000]
Length = 261
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|229545170|ref|ZP_04433895.1| recombination protein O [Enterococcus faecalis TX1322]
gi|229549419|ref|ZP_04438144.1| recombination protein O [Enterococcus faecalis ATCC 29200]
gi|255972123|ref|ZP_05422709.1| recombination protein O [Enterococcus faecalis T1]
gi|256963576|ref|ZP_05567747.1| recombination protein O [Enterococcus faecalis HIP11704]
gi|257079641|ref|ZP_05574002.1| recombination protein O [Enterococcus faecalis JH1]
gi|257090599|ref|ZP_05584960.1| recombination protein recO [Enterococcus faecalis CH188]
gi|257416647|ref|ZP_05593641.1| recombination protein O [Enterococcus faecalis AR01/DG]
gi|257421949|ref|ZP_05598939.1| DNA repair protein recO [Enterococcus faecalis X98]
gi|294780921|ref|ZP_06746275.1| DNA repair protein RecO [Enterococcus faecalis PC1.1]
gi|307270834|ref|ZP_07552122.1| DNA repair protein RecO [Enterococcus faecalis TX4248]
gi|307271515|ref|ZP_07552787.1| DNA repair protein RecO [Enterococcus faecalis TX0855]
gi|312899838|ref|ZP_07759157.1| DNA repair protein RecO [Enterococcus faecalis TX0470]
gi|312905131|ref|ZP_07764252.1| DNA repair protein RecO [Enterococcus faecalis TX0635]
gi|312953488|ref|ZP_07772328.1| DNA repair protein RecO [Enterococcus faecalis TX0102]
gi|229305656|gb|EEN71652.1| recombination protein O [Enterococcus faecalis ATCC 29200]
gi|229309715|gb|EEN75702.1| recombination protein O [Enterococcus faecalis TX1322]
gi|255963141|gb|EET95617.1| recombination protein O [Enterococcus faecalis T1]
gi|256954072|gb|EEU70704.1| recombination protein O [Enterococcus faecalis HIP11704]
gi|256987671|gb|EEU74973.1| recombination protein O [Enterococcus faecalis JH1]
gi|256999411|gb|EEU85931.1| recombination protein recO [Enterococcus faecalis CH188]
gi|257158475|gb|EEU88435.1| recombination protein O [Enterococcus faecalis ARO1/DG]
gi|257163773|gb|EEU93733.1| DNA repair protein recO [Enterococcus faecalis X98]
gi|294452047|gb|EFG20495.1| DNA repair protein RecO [Enterococcus faecalis PC1.1]
gi|306511787|gb|EFM80785.1| DNA repair protein RecO [Enterococcus faecalis TX0855]
gi|306512835|gb|EFM81479.1| DNA repair protein RecO [Enterococcus faecalis TX4248]
gi|310628697|gb|EFQ11980.1| DNA repair protein RecO [Enterococcus faecalis TX0102]
gi|310631521|gb|EFQ14804.1| DNA repair protein RecO [Enterococcus faecalis TX0635]
gi|311293088|gb|EFQ71644.1| DNA repair protein RecO [Enterococcus faecalis TX0470]
gi|315152155|gb|EFT96171.1| DNA repair protein RecO [Enterococcus faecalis TX0031]
gi|315155342|gb|EFT99358.1| DNA repair protein RecO [Enterococcus faecalis TX0043]
gi|315159082|gb|EFU03099.1| DNA repair protein RecO [Enterococcus faecalis TX0312]
gi|315579041|gb|EFU91232.1| DNA repair protein RecO [Enterococcus faecalis TX0630]
gi|323481398|gb|ADX80837.1| DNA repair protein RecO [Enterococcus faecalis 62]
gi|329572236|gb|EGG53896.1| DNA repair protein RecO [Enterococcus faecalis TX1467]
Length = 262
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|29376904|ref|NP_816058.1| DNA repair protein RecO, putative [Enterococcus faecalis V583]
gi|227553940|ref|ZP_03983987.1| recombination protein O [Enterococcus faecalis HH22]
gi|255975190|ref|ZP_05425776.1| recombination protein O [Enterococcus faecalis T2]
gi|256763102|ref|ZP_05503682.1| recombination protein O [Enterococcus faecalis T3]
gi|256956686|ref|ZP_05560857.1| recombination protein O [Enterococcus faecalis DS5]
gi|300861009|ref|ZP_07107096.1| DNA repair protein RecO [Enterococcus faecalis TUSoD Ef11]
gi|307285809|ref|ZP_07565943.1| DNA repair protein RecO [Enterococcus faecalis TX0860]
gi|42559464|sp|Q831U0|RECO_ENTFA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|29344369|gb|AAO82128.1| DNA repair protein RecO, putative [Enterococcus faecalis V583]
gi|227176926|gb|EEI57898.1| recombination protein O [Enterococcus faecalis HH22]
gi|255968062|gb|EET98684.1| recombination protein O [Enterococcus faecalis T2]
gi|256684353|gb|EEU24048.1| recombination protein O [Enterococcus faecalis T3]
gi|256947182|gb|EEU63814.1| recombination protein O [Enterococcus faecalis DS5]
gi|300850048|gb|EFK77798.1| DNA repair protein RecO [Enterococcus faecalis TUSoD Ef11]
gi|306502570|gb|EFM71837.1| DNA repair protein RecO [Enterococcus faecalis TX0860]
gi|315035614|gb|EFT47546.1| DNA repair protein RecO [Enterococcus faecalis TX0027]
gi|315146684|gb|EFT90700.1| DNA repair protein RecO [Enterococcus faecalis TX4244]
gi|315166397|gb|EFU10414.1| DNA repair protein RecO [Enterococcus faecalis TX1341]
gi|315170293|gb|EFU14310.1| DNA repair protein RecO [Enterococcus faecalis TX1342]
gi|315574359|gb|EFU86550.1| DNA repair protein RecO [Enterococcus faecalis TX0309B]
gi|315580166|gb|EFU92357.1| DNA repair protein RecO [Enterococcus faecalis TX0309A]
gi|327535694|gb|AEA94528.1| recombination protein O [Enterococcus faecalis OG1RF]
Length = 262
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|312863966|ref|ZP_07724203.1| DNA repair protein RecO [Streptococcus vestibularis F0396]
gi|311100532|gb|EFQ58738.1| DNA repair protein RecO [Streptococcus vestibularis F0396]
Length = 257
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y E + ++++ T Q G+ + FVR G S ++ ++Q N+
Sbjct: 5 ESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + +L+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLERTLELMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYEEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLDPNVPYLLDRFQGLSFEELRS 207
>gi|255019673|ref|ZP_05291752.1| DNA repair protein RecO [Acidithiobacillus caldus ATCC 51756]
gi|254970896|gb|EET28379.1| DNA repair protein RecO [Acidithiobacillus caldus ATCC 51756]
Length = 248
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 4/153 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRL 62
+D A +L + + +++LEV+T +GR R + R L+AG + WR R
Sbjct: 6 EDHAFVLHRYPFSDSSLVLEVITAGHGRLGLLARGARRPRSALGGLEAGRPFVLRWRGRG 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
E A+L L + R +P EL+ L
Sbjct: 66 ELPT---LVSADEVAPARLPGPWQGLCLFYVNELVLRLTVRNDPVPELFAAYAEVLEDLW 122
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL+ +G+ DL C V G
Sbjct: 123 AGARATWHLRRFEQRLLRALGWAADLPYCTVCG 155
>gi|290960571|ref|YP_003491753.1| recombination protein O [Streptomyces scabiei 87.22]
gi|260650097|emb|CBG73213.1| Recombination protein O [Streptomyces scabiei 87.22]
Length = 250
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 77/190 (40%), Gaps = 14/190 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 5 FRDDGVVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 64
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ LG + E + + ++S +++ + E + Y +
Sbjct: 65 RGSELLGRGLPLCTQSETIAPYGGGIVSDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 124
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG+
Sbjct: 125 LVGALRTLARGEHAPHLV--LDAFLLRSLAVNGYAPSFGDCAKCGMPGPNRFFSVAAGGS 182
Query: 171 VCRSVGLPYA 180
VC +P +
Sbjct: 183 VCVDCRVPGS 192
>gi|94968222|ref|YP_590270.1| DNA repair protein RecO [Candidatus Koribacter versatilis Ellin345]
gi|119361444|sp|Q1ISF4|RECO_ACIBL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|94550272|gb|ABF40196.1| DNA replication and repair protein RecO [Candidatus Koribacter
versatilis Ellin345]
Length = 244
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 2/167 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M Q +AI+L E ++++ + TR G+ G + + R + L+ VRV +
Sbjct: 1 MLKQSEAIVLRTYPMREADLLVTLFTRAEGKIKGVAKAAKKSRRRFGGALEPLTHVRVYY 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R Q L + + L + + L + L++ +
Sbjct: 61 EDRERQELTRLDSCDVLASPMSAEVDYPRALALGHVAEVIDDLLPDREPNDAVFRLSLAV 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP 165
+P + +L +++ GF DL CVV G D
Sbjct: 121 LGQLVPGAVWMPLTYFDLWMVRLAGFLPDLMHCVVCGEELDDRAFFH 167
>gi|217970711|ref|YP_002355945.1| DNA repair protein RecO [Thauera sp. MZ1T]
gi|217508038|gb|ACK55049.1| DNA repair protein RecO [Thauera sp. MZ1T]
Length = 252
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 5/149 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
Q A +L + E ++I+E+ R++GR + + +++ +L A + ++W
Sbjct: 10 QQPAWVLHTYPWRETSLIVEIFAREHGRVALVAKGARRPHSQLRGVLLAFQPLWMDWSGG 69
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
LL + G L R +P L+D +
Sbjct: 70 GEVKT---LVRAEWQGGQPLLIGRALICGYYLNELLVRLTAREDPHPRLFDAYAEAVRAL 126
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
I + EL LL+ +G+ L
Sbjct: 127 GRGEAESPILRRFELALLQELGYEAGLAN 155
>gi|257419863|ref|ZP_05596857.1| recombination protein recO [Enterococcus faecalis T11]
gi|257161691|gb|EEU91651.1| recombination protein recO [Enterococcus faecalis T11]
Length = 262
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTEAYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S K G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|269794674|ref|YP_003314129.1| DNA replication and repair protein RecO [Sanguibacter keddieii DSM
10542]
gi|269096859|gb|ACZ21295.1| DNA replication and repair protein RecO [Sanguibacter keddieii DSM
10542]
Length = 281
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 4/183 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ +TR++G+ + + S R L+ V V
Sbjct: 8 YRDEALVLRTHKLGEADRIITFLTREHGKVRAVAKGVRRTSSRFGARLEPFMFVDVQLHV 67
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFL 118
++ V A +L+ G + R + + + +
Sbjct: 68 GRNLDIVTQAEMVQPYARAIFSDYTLYTAGAVMLETADRLVEAEREPSVQQFWLLAGALR 127
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
G + L L G+ C G S GG VC P
Sbjct: 128 ALADHAHAPGLVLDSYLLRALAVAGWAPTFADCARCGEPGPHRAFSVAQGGTVCPRCRPP 187
Query: 179 YAE 181
+
Sbjct: 188 GST 190
>gi|320010909|gb|ADW05759.1| DNA repair protein RecO [Streptomyces flavogriseus ATCC 33331]
Length = 248
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD ++L + GE + I+ ++TR +GR R + + + L+ + V V + +
Sbjct: 4 FRDDGVVLRTQKLGEADRIITILTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFA 63
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDM 113
R ++ +G + E + + ++S +++ + E + Y +
Sbjct: 64 RGSELIGRGLPLCTQSETIAPYGGGIVSDYARYTAGTAMLETAERFTDHEGEPAVQQYLL 123
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 124 LVGGLRTLARAEHAPNL--ILDAFLLRSLAVNGYAPSFVDCAKCGMPGPNRFFSVAAGGV 181
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+C +P + L T D ++
Sbjct: 182 ICGDCRVPGSVVPSAEAVELLSALLTGDWET 212
>gi|238020903|ref|ZP_04601329.1| hypothetical protein GCWU000324_00798 [Kingella oralis ATCC 51147]
gi|237867883|gb|EEP68889.1| hypothetical protein GCWU000324_00798 [Kingella oralis ATCC 51147]
Length = 300
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 5/166 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R +GR R+ ++ + +L + +W +
Sbjct: 64 FLLTALPWRENSLRVEAFSRDFGRVSLLARSARTRGSELRGVLLPFVPISASWFGKEELK 123
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L + + + EL+ L+ L
Sbjct: 124 TVHRAEWRGGWAQPV---GQRLMSALYVNELVLKLTAREDGQPELFTALHDVLRAICTAP 180
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
E LL +GF D + W + + AV
Sbjct: 181 HFASALRCFEWRLLTLLGFAPDWARDADGRRVAAEGWYAVQPETAV 226
>gi|77457223|ref|YP_346728.1| DNA repair protein RecO [Pseudomonas fluorescens Pf0-1]
gi|92087032|sp|Q3KHL7|RECO_PSEPF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|77381226|gb|ABA72739.1| DNA repair protein [Pseudomonas fluorescens Pf0-1]
Length = 229
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R +
Sbjct: 10 PAYVLHSRAYRETSALVDFLTP-QGRLRAVLRSARG-KAGTLARPFVPLEVEFRGKGELK 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ A + GL L R LP +P ++D L
Sbjct: 68 N---VGRMESVGNATWMVGEALFSGLYLNELLIRLLPAEDPHPAVFDHYAATLLALAEGR 124
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ + E LL ++G+G L +
Sbjct: 125 PLEPLLRSFEWRLLDDLGYGFSLNTDINDEPV 156
>gi|312277442|gb|ADQ62099.1| DNA repair protein recO [Streptococcus thermophilus ND03]
Length = 257
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ IL R+Y E + ++++ T+Q G+ + FVR G S ++ ++Q N+
Sbjct: 5 ESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + +L+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYEEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLDPNVPYLLDRFQGLSFEELRS 207
>gi|313500337|gb|ADR61703.1| RecO [Pseudomonas putida BIRD-1]
Length = 227
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 14/232 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R + + +++ + V R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRMRAVLRRARG-KGGSLVRPFVSLEVELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L GL L R LP P L++ + L
Sbjct: 66 N---VSRMDSTGIAAWLHGDALFSGLYLNELLMRLLPAEAPFPALFEHYTLTLQALSAGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L V + + R +
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLHHDVNEQPIAADGLYRLRVDAGLERVELAQ--PGLFR 180
Query: 186 LPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + D +L +A + L + AL ++ L RE F +
Sbjct: 181 GTELLALAQTDWDAPGALLAAKR-----LMRQALAVHLGAKPLVSRELFRKR 227
>gi|257890446|ref|ZP_05670099.1| recombination protein O [Enterococcus faecium 1,231,410]
gi|294618703|ref|ZP_06698236.1| DNA repair protein RecO [Enterococcus faecium E1679]
gi|257826806|gb|EEV53432.1| recombination protein O [Enterococcus faecium 1,231,410]
gi|291595046|gb|EFF26390.1| DNA repair protein RecO [Enterococcus faecium E1679]
Length = 270
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRNIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICEKHWPMDEH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|227519873|ref|ZP_03949922.1| recombination protein O [Enterococcus faecalis TX0104]
gi|227072667|gb|EEI10630.1| recombination protein O [Enterococcus faecalis TX0104]
gi|315144806|gb|EFT88822.1| DNA repair protein RecO [Enterococcus faecalis TX2141]
Length = 264
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ IIL + + EK+ ++++ T YG+ + FV+ P + R
Sbjct: 5 ETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + YG + + + ++ L+ ++ L+
Sbjct: 65 EEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL+ G + CV G TQ S + G +C +
Sbjct: 125 NEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSRYSGVLCEKHWHLDEQ 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHADPRAI 193
>gi|19553482|ref|NP_601484.1| DNA repair protein RecO [Corynebacterium glutamicum ATCC 13032]
gi|62391125|ref|YP_226527.1| DNA repair protein RecO [Corynebacterium glutamicum ATCC 13032]
gi|21325055|dbj|BAB99677.1| Recombinational DNA repair protein [Corynebacterium glutamicum ATCC
13032]
gi|41326464|emb|CAF20626.1| Recombinational DNA repair protein (RecF pathway) [Corynebacterium
glutamicum ATCC 13032]
Length = 242
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 64/182 (35%), Gaps = 3/182 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A+++ +GE + I+ ++TR +G G + + + + LQ + V
Sbjct: 6 FRDRALVVKTYDFGEADRIIVLLTRDHGIVRGVAKGVRRSKSRFGSRLQLFVELDVQLYP 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + + ++ +I+ + + E L++ L
Sbjct: 66 GRKLST-ISGADTVGYYASGIIEDFTRYSCASAILEIATHIAGLENDPHLFEETTRALKN 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + L + + G+ L C G P GGAVC P +
Sbjct: 125 IQDSPEPILNLDEFMLRAMNHAGWAPSLFDCAACGRPGPHNAFHPGVGGAVCLYCRPPGS 184
Query: 181 EK 182
+
Sbjct: 185 AE 186
>gi|322390548|ref|ZP_08064065.1| recombination protein O [Streptococcus parasanguinis ATCC 903]
gi|321142744|gb|EFX38205.1| recombination protein O [Streptococcus parasanguinis ATCC 903]
Length = 259
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 65/188 (34%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ I+L R + E + ++++ T + G+ + FV++ R+ P+LQ + +
Sbjct: 5 IETRGIVLYNRDFREDDKLVKIFTEKSGKRMFFVKHAGKSRLNPMLQPLVTADMLLKIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
F+ ++ + Y + + + + L+ L L+ +
Sbjct: 65 DGLSYIDDFQDVQVYKKINADLFALSYATYVLALADASIQDNQVDPALFAFLEKTLSLME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ LL G L+L +C S + G +C +
Sbjct: 125 EGLDYEVLTNIFEIQLLSRFGVVLNLHECCFCHRVGLPFDYSFRYSGVLCPDHYDRDERR 184
Query: 183 MLVLPSFL 190
P+ L
Sbjct: 185 AHWHPNVL 192
>gi|322517630|ref|ZP_08070495.1| recombination protein O [Streptococcus vestibularis ATCC 49124]
gi|322123707|gb|EFX95292.1| recombination protein O [Streptococcus vestibularis ATCC 49124]
Length = 257
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y E + ++++ T Q G+ + FVR G S ++ ++Q N+
Sbjct: 5 ESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + +L+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLKKTLELMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYEEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLDPNVPYLLDRFQGLSFEELRS 207
>gi|330950054|gb|EGH50314.1| DNA repair protein RecO [Pseudomonas syringae Cit 7]
Length = 227
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALSLGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|325275442|ref|ZP_08141373.1| DNA repair protein RecO [Pseudomonas sp. TJI-51]
gi|324099418|gb|EGB97333.1| DNA repair protein RecO [Pseudomonas sp. TJI-51]
Length = 227
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 14/232 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R + + +++ + + R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRMRAVLRRARG-KGGSLVRPFVPLELELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L GL L R LP P + L++ + L
Sbjct: 66 N---VGRMDSAGIAAWLHGDALFSGLYLNELLMRLLPAEAPFVALFEHYALTLQALAEGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L++ V + + R +
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLSQDVNDYPIAADGLYRLRVDAGLERV--ELVQPGLFR 180
Query: 186 LPSFLWKEEQTIDAD-SLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + AD +L +A + L + AL ++ L RE F +
Sbjct: 181 GTELLALAQADWSADGALLAAKR-----LMRQALAVHLGGKPLVSRELFRKR 227
>gi|289676658|ref|ZP_06497548.1| DNA repair protein RecO [Pseudomonas syringae pv. syringae FF5]
gi|302186919|ref|ZP_07263592.1| DNA repair protein RecO [Pseudomonas syringae pv. syringae 642]
Length = 227
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALSLGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|322374257|ref|ZP_08048789.1| DNA repair protein RecO [Streptococcus sp. C150]
gi|321276861|gb|EFX53934.1| DNA repair protein RecO [Streptococcus sp. C150]
Length = 257
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 3/207 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + ++L R+Y E + ++++ T Q G+ + FVR G + ++ ++Q +
Sbjct: 1 MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAEFMMT 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ES Y + + +L+ L L
Sbjct: 61 VNDEGLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGMVDEQLFAFLEKTLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L G L+ +CV S K G +C +
Sbjct: 121 LMEEGLDYEILTNIFEVQVLDRFGVKLNFHECVFCHRVGLPFDFSYKYSGLLCPNHYAED 180
Query: 180 AEKMLVLP--SFLWKEEQTIDADSLKS 204
+ + P +L Q + L+S
Sbjct: 181 ERRSHLDPNVPYLLDRFQGLSFKELRS 207
>gi|319940341|ref|ZP_08014691.1| DNA repair protein recO [Streptococcus anginosus 1_2_62CV]
gi|319810397|gb|EFW06739.1| DNA repair protein recO [Streptococcus anginosus 1_2_62CV]
Length = 257
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ ++ P++Q + +
Sbjct: 5 ITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ + + Y + + + E L+ L L +
Sbjct: 65 DGLSYIDDYQEVTTFQHINHDLFAMAYATYVVALADTSIQDNEIDSALFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +C S G +C +
Sbjct: 125 QGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRIGLPFDFSFTYNGVLCPEHYGKDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q + L
Sbjct: 185 SHLDPNIPYLLDQFQAVQYSEL 206
>gi|55820130|ref|YP_138572.1| DNA repair protein RecO [Streptococcus thermophilus LMG 18311]
gi|55822019|ref|YP_140460.1| DNA repair protein RecO [Streptococcus thermophilus CNRZ1066]
gi|67461284|sp|Q5M209|RECO_STRT1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67461290|sp|Q5M6K1|RECO_STRT2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|55736115|gb|AAV59757.1| DNA repair protein [Streptococcus thermophilus LMG 18311]
gi|55738004|gb|AAV61645.1| DNA repair protein [Streptococcus thermophilus CNRZ1066]
Length = 257
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ IL R+Y E + ++++ T+Q G+ + FVR G S ++ ++Q N+
Sbjct: 5 ESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + +L+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYEEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLDPNVPYLLDRFQGLSFEELRS 207
>gi|116626995|ref|YP_819614.1| DNA repair protein RecO [Streptococcus thermophilus LMD-9]
gi|122268400|sp|Q03N04|RECO_STRTD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116100272|gb|ABJ65418.1| DNA replication and repair protein RecO [Streptococcus thermophilus
LMD-9]
Length = 257
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +IL R+Y E + ++++ T+Q G+ + FVR G S ++ ++Q N+
Sbjct: 5 ESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + EL+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLAALTDAAIADGVVDAELFAFLEKTLVLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYEEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLDPNVPYLLDRFQGLSFEELRS 207
>gi|294788250|ref|ZP_06753493.1| DNA repair protein RecO [Simonsiella muelleri ATCC 29453]
gi|294483681|gb|EFG31365.1| DNA repair protein RecO [Simonsiella muelleri ATCC 29453]
Length = 251
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 5/168 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + + E ++ +E +R YGR R+ ++ + +L + +W +
Sbjct: 13 FLLSTKPWRENSLWVEAFSRDYGRVALLARSARTRGSELRGVLIPFVPLSASWYGKEELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
S + L + +P ++Y L +
Sbjct: 73 TLH---RAEWLGGWAQPHSRALFSAMYVNELLMKLTAREDPHDDIYAALYRVMQSICTQE 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
Q E LL +G D + + + + ++ AVC
Sbjct: 130 NHVAALRQFEYALLNTLGVAPDFSLDSNNQLIESEKYYWIRAEEAVCH 177
>gi|307329119|ref|ZP_07608286.1| DNA repair protein RecO [Streptomyces violaceusniger Tu 4113]
gi|306885314|gb|EFN16333.1| DNA repair protein RecO [Streptomyces violaceusniger Tu 4113]
Length = 252
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 15/191 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++DD I+L + GE + I+ ++TR GR R + + + L+ + V V + S
Sbjct: 7 FRDDGIVLRTQKLGEADRIISLLTRNNGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFS 66
Query: 61 RLAQN------LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YD 112
R + E + + +++ +++ + E + Y
Sbjct: 67 RGGGELIGRGLPLCTQSETIAPYGGSIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYL 126
Query: 113 MLNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+L L + ++ LL+++ G+ C G+ + S +GG
Sbjct: 127 LLVGALRTLAAGEHQPHLV--LDAFLLRSLAVNGYAPSFNDCAKCGMPGPNRFFSVGAGG 184
Query: 170 AVCRSVGLPYA 180
+C +P +
Sbjct: 185 VICGECRVPGS 195
>gi|330898517|gb|EGH29936.1| DNA repair protein RecO [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 209
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALSLGG 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|120555158|ref|YP_959509.1| DNA repair protein RecO [Marinobacter aquaeolei VT8]
gi|171769204|sp|A1U2V3|RECO_MARAV RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|120325007|gb|ABM19322.1| DNA replication and repair protein RecO [Marinobacter aquaeolei
VT8]
Length = 246
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 8/152 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
Q+ A ++ R + E +++++ T +GR R S + + LQ + V+W +
Sbjct: 7 QEPAYVVHRRPWRETALLVDLFTLNHGRMSVVARGANSTKSPLKAQLQPFQPLLVDWTGK 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ G + R LP +P L+ L
Sbjct: 67 SELKTLVQLEVR---SAPAVSQPRALYSGFYINELVQRVLPVADPSPALFASYIETLQAL 123
Query: 122 KI---PSVIGKIFVQIELMLLKNIGFGLDLTK 150
+ + + E ++G+ +
Sbjct: 124 ADLSSQDDVEPLLRRFERAFAASLGYDFAWDE 155
>gi|237798715|ref|ZP_04587176.1| DNA repair protein RecO [Pseudomonas syringae pv. oryzae str. 1_6]
gi|237806148|ref|ZP_04592852.1| DNA repair protein RecO [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021568|gb|EGI01625.1| DNA repair protein RecO [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027261|gb|EGI07316.1| DNA repair protein RecO [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 227
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P ++D L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFDHYAATLIALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGD 152
>gi|254284014|ref|ZP_04958982.1| DNA repair protein RecO [gamma proteobacterium NOR51-B]
gi|219680217|gb|EED36566.1| DNA repair protein RecO [gamma proteobacterium NOR51-B]
Length = 246
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 9/227 (3%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR----MQPILQAGNLVRVNWRSRLAQN 65
L RSYG+ ++LEV T + GR + +LQ + +
Sbjct: 2 LHRRSYGDNGLLLEVFTHETGRLSAVAKGVHRRSRGGAKSGLLQPFTPLLITLAGNSDLK 61
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L + L L R LP+ +P +L+ L K
Sbjct: 62 QLRQIES---AGANLRLDREAMISALYVNELLVRLLPKFDPQPQLFADYGSSLQDMK-AG 117
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL+ +G+ +L+ V+ + +
Sbjct: 118 GNEPVLRRFEWRLLEALGYQPNLSCDVLGESLLGHRRYALDPTRGLVGVDDTETDNSGFT 177
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLREN 231
+ + + + ++++ AL+ + RE
Sbjct: 178 GNTLIRVIDALENHSEFDREALACAKYISRRALKVQLGDKPLRSREL 224
>gi|294664537|ref|ZP_06729882.1| DNA repair protein RecO [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605699|gb|EFF49005.1| DNA repair protein RecO [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 240
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R Q R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L+ L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQADALD---TAPRLAGDTMLAGFYISELLLRLAPRNDPVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + + E +L+ +GF DL
Sbjct: 118 VRSHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|190575412|ref|YP_001973257.1| DNA repair protein RecO [Stenotrophomonas maltophilia K279a]
gi|229485574|sp|B2FPX7|RECO_STRMK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|190013334|emb|CAQ46968.1| putative DNA repair protein RecO [Stenotrophomonas maltophilia
K279a]
Length = 239
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 6/166 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M D +L R+Y E ++++EV++ Q+GR R + ++ LQ +R +
Sbjct: 2 MIEDDTGFVLHARAYRETSLLVEVLSAQHGRVGLLARGVSTAKGQVLRAALQPLQWIRFS 61
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ R + A L L G R P ++P ELY
Sbjct: 62 AQQRGELAQLRGAEALD---AAPRLVGQAMLAGFYLSELTLRLAPRQDPLPELYLAYGEA 118
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + + + E LL +G G +L
Sbjct: 119 RARLAVGAGLAWTLRRFERELLTALGLGFELDSASDGQPIDPAARY 164
>gi|315127395|ref|YP_004069398.1| DNA repair protein recO (recombination protein O)
[Pseudoalteromonas sp. SM9913]
gi|315015909|gb|ADT69247.1| DNA repair protein recO (recombination protein O)
[Pseudoalteromonas sp. SM9913]
Length = 230
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 72/230 (31%), Gaps = 13/230 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L R Y + ++L+++ G+ R Q+ + + LQ + V++ +
Sbjct: 7 KAYLLHRRPYSDSQVMLDMLVEGVGQLRMLARVSGRQATKYKAQLQPFQALLVHYNGKYD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L+ G R +P EP +++ + L
Sbjct: 67 LK---YINKFELHGNPLFLTGDKLYCGFYLNELTNRIVPINEPIDQVFQLYKTHLENLNS 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + + E LL+ +G+G+D + D S A +
Sbjct: 124 GTDMQAVLRSYEFQLLELLGYGVDFSFDADGEPIDDTQTY---SYFAEVGFAVQHDSRSG 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + L++Y L+ + + RE F
Sbjct: 181 FTGSQLNAIANHDFSQADVLYMAK----QLSRYLLKPLLGNKPLKSRELF 226
>gi|21242080|ref|NP_641662.1| DNA repair protein RecO [Xanthomonas axonopodis pv. citri str. 306]
gi|42559487|sp|Q8PMU8|RECO_XANAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|21107487|gb|AAM36198.1| DNA repair protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 240
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R Q R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L+ L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDPAARY 164
>gi|325920675|ref|ZP_08182585.1| DNA replication and repair protein RecO [Xanthomonas gardneri ATCC
19865]
gi|325548865|gb|EGD19809.1| DNA replication and repair protein RecO [Xanthomonas gardneri ATCC
19865]
Length = 240
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG---QSHRMQPILQAGNLVRV 56
M ++ +L VR + E ++++EV+T Q GR R + ++ LQ L++
Sbjct: 1 MLIDNERGFVLHVRPWRETSLLVEVLTEQQGRVGLLARGVHAPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + A L+ L G L R P +P EL+D
Sbjct: 61 TAMQRGELAQLRQAEALD---TAPRLAGETMLAGFYISELLLRLAPRNDPVPELFDCYAR 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ Q E +L +GF DL
Sbjct: 118 ARAHLASNLPLAWGLRQFERDVLDGLGFAFDLQHDNDGQPIDPAARY 164
>gi|332289406|ref|YP_004420258.1| DNA repair protein RecO [Gallibacterium anatis UMN179]
gi|330432302|gb|AEC17361.1| DNA repair protein RecO [Gallibacterium anatis UMN179]
Length = 220
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 12/222 (5%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESH 77
+++++ T YG + ++ R + +LQ + + W R +
Sbjct: 1 MLVDLFTEHYGCITLLAKGARAKRSPLKSLLQPFTPLLLRWSGRGTLK---ILTKAEAIS 57
Query: 78 CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK-IPSVIGKIFVQIEL 136
+ + G L R L + EL+ L + + E
Sbjct: 58 VTLPMQTVALYSGFYVNELLVRTLEQETAYPELFHEYLRCLTGLAANGDQVEATLRRFEF 117
Query: 137 MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQT 196
MLLK +G+G+D C +G + L +
Sbjct: 118 MLLKALGYGIDFEHCAGSGEPVAAEMTYQYREEKGFIASLLKNNLTFYGRDLQAFANLSF 177
Query: 197 IDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ ++L++A + T + AL+ + RE F L
Sbjct: 178 NEKETLQAAKRFT-----RIALKPFLGGKPLKSRELFQQHLN 214
>gi|168493730|ref|ZP_02717873.1| DNA repair protein RecO [Streptococcus pneumoniae CDC3059-06]
gi|183576233|gb|EDT96761.1| DNA repair protein RecO [Streptococcus pneumoniae CDC3059-06]
Length = 256
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDDRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|167041436|gb|ABZ06188.1| putative Recombination protein O [uncultured marine microorganism
HF4000_006O13]
gi|167041993|gb|ABZ06730.1| putative Recombination protein O [uncultured marine microorganism
HF4000_141E02]
Length = 245
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 6/214 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
++ Y E + I+ + ++ YGR + + + + LQ ++++W +
Sbjct: 13 YLMHQMPYSETSQIVRIFSQNYGRVDLIAKGSKRPKSKFRSFLQPFLPLQLSWSGKSQLK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
R + + L + FL +P L+ + L+ +
Sbjct: 73 T--LREAEIHGQYLTRIQGKHLLSAYYLNELILSFLRMEDPYQNLFALYASALHGFSESN 130
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCV--VTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I I Q E+++L IG+ ++ + DL +V G V + +
Sbjct: 131 PIEPILRQFEILMLSEIGYAINFETEALSQKPIEADLDYVFIAEQGFVSKRNHNSSPFVV 190
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ D ++L A ++ + + +
Sbjct: 191 QGQVIQAINQGNFSDQETLVFAKKILRWSIEYHL 224
>gi|323350852|ref|ZP_08086510.1| recombination protein O [Streptococcus sanguinis VMC66]
gi|322122834|gb|EFX94540.1| recombination protein O [Streptococcus sanguinis VMC66]
gi|327488721|gb|EGF20521.1| recombination protein O [Streptococcus sanguinis SK1058]
Length = 257
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 YLNPNLPFLLDQFQAVRFSEL 206
>gi|164686275|ref|ZP_02210305.1| hypothetical protein CLOBAR_02713 [Clostridium bartlettii DSM
16795]
gi|164601877|gb|EDQ95342.1| hypothetical protein CLOBAR_02713 [Clostridium bartlettii DSM
16795]
Length = 254
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 17/222 (7%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
I+L Y E ++IL + TR+ G+ + + + + + +
Sbjct: 3 IVNTQGIVLRAVKYKENDLILTIFTRKLGKISAIAKGARRTKSALLSSCQVFAYSTFTLK 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLNC 120
N+ + ++ I+ L + + + L+ +L L
Sbjct: 63 KQGNMYRVTQTEIIKSFYEISYDLDIFSYATYIIQLIDYNVEDEVTNNRLFILLAQTLYL 122
Query: 121 HKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ I EL L+ IGF + +C G V G V
Sbjct: 123 LAKEEIDIVFIKDVFELKFLEYIGFKPIVNRCSNCGSKNLNNSVFNIYEGGVICENCRE- 181
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN 221
L++ ID ++ +L +Y LN L N
Sbjct: 182 ----------LFEYNMKIDLTTI----RLMEYILNNDILTCN 209
>gi|319945960|ref|ZP_08020210.1| recombination protein O [Streptococcus australis ATCC 700641]
gi|319748025|gb|EFW00269.1| recombination protein O [Streptococcus australis ATCC 700641]
Length = 259
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 65/188 (34%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ I+L R Y E + ++++ T Q G+ + FV++ R+ ++Q L + +
Sbjct: 5 IESRGIVLYHRDYREDDKLVKIFTEQAGKLMFFVKHANRSRLNSMIQPLTLADMYLKITD 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++S Y + + +R+P L+ L L
Sbjct: 65 DGLSYIEDIHEVQSFQGINQDLFRLSYATYILALADASIQDRQPDPALFAFLEQTLQLMD 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L++ +C V S + GG +C +
Sbjct: 125 RGLDYEILTNIFEMQILSRFGVALNVHECCVCHRVGLPFDFSFRLGGVLCPDHYDRDERR 184
Query: 183 MLVLPSFL 190
P+ L
Sbjct: 185 AHWDPNAL 192
>gi|228476695|ref|ZP_04061364.1| DNA repair protein RecO [Streptococcus salivarius SK126]
gi|228251644|gb|EEK10741.1| DNA repair protein RecO [Streptococcus salivarius SK126]
Length = 257
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y E + ++++ T Q G+ + FVR G S ++ ++Q +
Sbjct: 5 ESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDE 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ES Y + + +L+ L L +
Sbjct: 65 GLSFIEDYSQAESFKEITSDIFKLSYATYLASLTDAAIADGVADAQLFAFLEKTLELMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGLPFDFSYKFSGLLCPNHYAEDERRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLKS 204
+ P +L Q + + L+S
Sbjct: 185 HLNPNVPYLLDRFQGLSFEELRS 207
>gi|148987756|ref|ZP_01819219.1| DNA repair protein RecO [Streptococcus pneumoniae SP6-BS73]
gi|147926220|gb|EDK77293.1| DNA repair protein RecO [Streptococcus pneumoniae SP6-BS73]
Length = 256
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 TGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDKRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|150390774|ref|YP_001320823.1| DNA repair protein RecO [Alkaliphilus metalliredigens QYMF]
gi|172052484|sp|A6TSJ6|RECO_ALKMQ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|149950636|gb|ABR49164.1| DNA repair protein RecO [Alkaliphilus metalliredigens QYMF]
Length = 246
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 5/209 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M + + +L R YGE + +L + T++ G+ + + + + ++
Sbjct: 1 MLIKTEGFVLRNRKYGETDSMLVIFTKKVGKINAIAKGARRTKSALLAGVQPFSYSDFVL 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + E E Y + + E + L+++L L+
Sbjct: 61 FKGRSLYTVNQTEPKEIFYNLREDVKRLSYAAYLLELVESVTEEGQTNNRLFNLLGRTLH 120
Query: 120 CHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVT-QDLLWVSPKSGGAVCRSVGL 177
K + I EL L++ G LT CV G T + S K GG +C
Sbjct: 121 LMKKEEIELETILRAFELKLMEYSGLKPHLTSCVSCGQTSSNSWRFSSKEGGLICHQCHG 180
Query: 178 --PYAEKMLVLPSFLWKEEQTIDADSLKS 204
++ K+ VL L D + ++
Sbjct: 181 IDSFSIKINVLTVKLANYLLAKDMEEIQK 209
>gi|90021886|ref|YP_527713.1| DNA replication and repair protein RecO [Saccharophagus degradans
2-40]
gi|89951486|gb|ABD81501.1| DNA replication and repair protein RecO [Saccharophagus degradans
2-40]
Length = 235
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 73/234 (31%), Gaps = 12/234 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
D+A IL R+Y + II+E T +GR G R R Q L ++WR
Sbjct: 10 TDNAYILHSRAYTDSRIIIEFFTENHGRVAGIFRLPSKKRH-FKPQPFTLYTIHWRWGAE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F + + L GL + R L + +P E++ N L
Sbjct: 69 LKTILFLDPIANAEA---LVGKASYCGLYLNELVLRLLSKEDPSPEIFAAYNAALKGLVG 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSVGLPYA 180
+ EL +L +G+ +D + ++ G SVG
Sbjct: 126 GQELEAPLRHFELGILAELGYAVDFDFDSSGNPIAASNSVAYLFKVGEGFSLYSVGQKQV 185
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+ + +K A + + L + RE FL
Sbjct: 186 GHVYSGAVLRDISARNFSNTPVKKAAKQIC----RACLAPLLGAKPLKSRELFL 235
>gi|257865834|ref|ZP_05645487.1| recombination protein O [Enterococcus casseliflavus EC30]
gi|257872169|ref|ZP_05651822.1| recombination protein O [Enterococcus casseliflavus EC10]
gi|257875462|ref|ZP_05655115.1| recombination protein O [Enterococcus casseliflavus EC20]
gi|257799768|gb|EEV28820.1| recombination protein O [Enterococcus casseliflavus EC30]
gi|257806333|gb|EEV35155.1| recombination protein O [Enterococcus casseliflavus EC10]
gi|257809628|gb|EEV38448.1| recombination protein O [Enterococcus casseliflavus EC20]
Length = 257
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 3/187 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + I+L + + EK+ ++++ T G+ + +V+ + +
Sbjct: 1 MNLVETKGILLFSKDHKEKDKLVKIFTESAGKQMFYVKGAHRKNNPLAPALLSYTEATYM 60
Query: 60 S--RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + + Y + + +R LY L+
Sbjct: 61 GTIKTEGLSFLNNAKDIHPFRTIQSDIFIAGYATYLLNLADSAIDDRVYDPHLYQFLHEA 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L + I E+ +L G + T C + G T S K G +C
Sbjct: 121 LQLMDQENDAEIITNIFEIQILHRFGITPNWTHCAICGKTDGRFDYSSKYSGILCEQHWG 180
Query: 178 PYAEKML 184
+
Sbjct: 181 MDERRYH 187
>gi|297626096|ref|YP_003687859.1| DNA repair protein recO (Recombination protein O)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921861|emb|CBL56421.1| DNA repair protein recO (Recombination protein O)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 247
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 8/205 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ +++R +G+ R + S + L+ N V V +
Sbjct: 4 YRDEAVVLRTHKLGEADRIITLLSRTHGKVRAVARGVRRTSSKFGGRLEPCNHVDVQFAV 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLN 119
+ ++ + L+ G + R + P L+ Y +L L
Sbjct: 64 GRSLDIVTQVECLHPYGDPLTRDYVLYTTGETMLEVADRLVAVENEPSLQQYRLLVGALR 123
Query: 120 CHKI--PSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ ++ LL+++ G+ L C GV W SP GG VC
Sbjct: 124 VLGQGTSDGPRPATMVLDSYLLRSLAVAGYAPVLDSCAKCGVMGQQEWFSPSIGGMVCSG 183
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDA 199
P + + + D
Sbjct: 184 CRPPGSARPEPESWQFLGALMSGDW 208
>gi|148996442|ref|ZP_01824160.1| DNA repair protein RecO [Streptococcus pneumoniae SP11-BS70]
gi|168576928|ref|ZP_02722770.1| DNA repair protein RecO [Streptococcus pneumoniae MLV-016]
gi|194397697|ref|YP_002036757.1| DNA repair protein RecO [Streptococcus pneumoniae G54]
gi|307066717|ref|YP_003875683.1| recombinational DNA repair ATPase [Streptococcus pneumoniae AP200]
gi|238690829|sp|B5E5I5|RECO_STRP4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|147757017|gb|EDK64056.1| DNA repair protein RecO [Streptococcus pneumoniae SP11-BS70]
gi|183577428|gb|EDT97956.1| DNA repair protein RecO [Streptococcus pneumoniae MLV-016]
gi|194357364|gb|ACF55812.1| DNA repair protein RecO [Streptococcus pneumoniae G54]
gi|306408254|gb|ADM83681.1| Recombinational DNA repair protein (RecF pathway) [Streptococcus
pneumoniae AP200]
gi|332201965|gb|EGJ16034.1| DNA repair protein RecO [Streptococcus pneumoniae GA41317]
Length = 256
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|325569849|ref|ZP_08145843.1| recombination protein O [Enterococcus casseliflavus ATCC 12755]
gi|325156972|gb|EGC69140.1| recombination protein O [Enterococcus casseliflavus ATCC 12755]
Length = 257
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 3/187 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + I+L + + EK+ ++++ T G+ + +V+ + +
Sbjct: 1 MNLVETKGILLFSKDHKEKDKLVKIFTESAGKQMFYVKGAHRKNNPLAPALLSYTEATYM 60
Query: 60 S--RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + + Y + + +R LY L+
Sbjct: 61 GTIKTEGLSFLNNAKDIHPFRTIQSDIFIAGYATYLLNLADSAIDDRVYDPHLYQFLHEA 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L+ + I E+ +L G + T C + G T S K G +C
Sbjct: 121 LHLMDQGNDAEIITNIFEIQILHRFGITPNWTHCAICGKTDGRFDYSSKYSGILCEQHWG 180
Query: 178 PYAEKML 184
+
Sbjct: 181 MDERRYH 187
>gi|325203553|gb|ADY99006.1| DNA repair protein RecO [Neisseria meningitidis M01-240355]
Length = 263
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|166712831|ref|ZP_02244038.1| DNA repair protein RecO [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 240
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R R + LQ L++
Sbjct: 1 MLIKHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVHGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLVGDTMLAGFYISELLLRLAPRNDPVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARTHLAADLPLAWGLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|58581480|ref|YP_200496.1| DNA repair protein RecO [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84623410|ref|YP_450782.1| DNA repair protein RecO [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188577280|ref|YP_001914209.1| DNA repair protein RecO [Xanthomonas oryzae pv. oryzae PXO99A]
gi|67461245|sp|Q5H1R0|RECO_XANOR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361498|sp|Q2P4L9|RECO_XANOM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238689547|sp|B2SRX5|RECO_XANOP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|58426074|gb|AAW75111.1| DNA repair protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84367350|dbj|BAE68508.1| DNA repair protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521732|gb|ACD59677.1| DNA repair protein RecO [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 240
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVHGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLVGDTMLAGFYISELLLRLAPRNDPVPELYACYTQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARTHLAADLPLAWGLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|306828474|ref|ZP_07461669.1| recombination protein O [Streptococcus mitis ATCC 6249]
gi|304429273|gb|EFM32358.1| recombination protein O [Streptococcus mitis ATCC 6249]
Length = 256
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G GL+ +CV S K G +C ++
Sbjct: 125 EGLDYQVLTNIFEIQILNRFGIGLNFNECVFCHRVGQAFDFSFKYGACLCPDHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|325208739|gb|ADZ04191.1| DNA repair protein RecO [Neisseria meningitidis NZ-05/33]
Length = 264
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTDALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|325202743|gb|ADY98197.1| DNA repair protein RecO [Neisseria meningitidis M01-240149]
Length = 263
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTDALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 237
>gi|325198870|gb|ADY94326.1| DNA repair protein RecO [Neisseria meningitidis G2136]
Length = 248
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 16/234 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTDALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+V L E A+SL+ A ++T F+ L + R+
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITRLFI--RHLLPEGL---KSRQVLE 238
>gi|320106411|ref|YP_004182001.1| DNA repair protein RecO [Terriglobus saanensis SP1PR4]
gi|319924932|gb|ADV82007.1| DNA repair protein RecO [Terriglobus saanensis SP1PR4]
Length = 245
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 2/154 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
QD+AI+L + E ++++ + TR GR G R+ R + L+ VR NW +
Sbjct: 5 QDEAIVLRTWPFQEADLLVSLFTRHQGRVKGVARHAMRSRRRFGGALEPMTYVRANWAEK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
Q L + + L + + + + L +
Sbjct: 65 PRQELVRLNSFEILWSPLREPVDYARSAALSVVAEVLESALPEQAPEDDVFRLALTTIER 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ L + + +G+ DL+ C V G
Sbjct: 125 MQVGEVWLPVTYFLLWVTRLLGWMPDLSSCAVCG 158
>gi|182418477|ref|ZP_02949771.1| DNA repair protein RecO [Clostridium butyricum 5521]
gi|237666513|ref|ZP_04526498.1| DNA repair protein RecO [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377859|gb|EDT75403.1| DNA repair protein RecO [Clostridium butyricum 5521]
gi|237657712|gb|EEP55267.1| DNA repair protein RecO [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 249
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 78/249 (31%), Gaps = 19/249 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ A+I+ + Y E + ++ T + G+ VR + + + + L + +
Sbjct: 7 FETKAVIIKTQDYRENDKLVWFYTEKLGKITAIVRGAKKSKSKFLSLTLPLCYGEYMVYK 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+++ S L + Y + E E +L+ L L
Sbjct: 67 GKNLYTLQEGKIINSFQGLLNNLDKLTYSSYLCELIDIACEENEVNEKLFKDLVTILYLL 126
Query: 122 KIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSVGLPY 179
+ E+ LLK G+ L L C + + S S G VC +
Sbjct: 127 NTDVLDYEILIRAFEIKLLKATGYSLTLDTCSICRKRLGVSNYISLSSFGGVCEECPKEH 186
Query: 180 ----------AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLR 229
A + L+ + ++ + ++T +F+ +N
Sbjct: 187 GVYISKGAYNALRYLMTVNVDKLYRLNLNNEIKHEIEKVTTFFI-----ANNYTKKPKS- 240
Query: 230 ENFLGKLLE 238
L + E
Sbjct: 241 LEMLKFIKE 249
>gi|312867000|ref|ZP_07727211.1| DNA repair protein RecO [Streptococcus parasanguinis F0405]
gi|311097482|gb|EFQ55715.1| DNA repair protein RecO [Streptococcus parasanguinis F0405]
Length = 259
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 65/188 (34%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ I+L R + E + ++++ T + G+ + FV++ R+ P+LQ + +
Sbjct: 5 IETRGIVLYNREFREDDKLVKIFTEKSGKRMFFVKHAGKSRLSPMLQPLVTADMLLKIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
F+ ++ + Y + + + + L+ L L+ +
Sbjct: 65 DGLSYIDDFQDVQVYKKINADLFALSYATYVLALADASIQDNQVDPALFAFLEKTLSLME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ LL G L+L +C S + G +C +
Sbjct: 125 EGLDYEVLTNIFEIQLLSRFGVVLNLHECCFCHRVGLPFDYSFRYSGVLCPDHYDRDERR 184
Query: 183 MLVLPSFL 190
P+ L
Sbjct: 185 AHWHPNVL 192
>gi|319787578|ref|YP_004147053.1| DNA repair protein RecO [Pseudoxanthomonas suwonensis 11-1]
gi|317466090|gb|ADV27822.1| DNA repair protein RecO [Pseudoxanthomonas suwonensis 11-1]
Length = 244
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 16/236 (6%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRV 56
M + + A +L R + E ++++EV++ +GR R S + ++ LQ +R
Sbjct: 1 MRIEGETAFVLHARPWRETSLLVEVLSEGHGRLGLVARGVGSPKRQVLRAALQPLQHIRF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + A L + L + R P ++P +L+D
Sbjct: 61 DAVLAGELAQLRGAEALD---SAPRLCGQVQLAAFYLNELVLRLAPRQDPLPDLFDAYAR 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV----SPKSGGAVC 172
+ + E LL +G G +L + +
Sbjct: 118 TRAALVEGGSLAWTLRRFERDLLGALGVGFELDVDGDGEPVDPAARYRLDPEHGARRLLS 177
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
+ DA+ L ++ +L + L H++ L
Sbjct: 178 DRGHGERNAAATGRALLALAADVQPDAEDL-ASLRLP----LRAVLAHHLGPRPLA 228
>gi|322388507|ref|ZP_08062109.1| recombination protein O [Streptococcus infantis ATCC 700779]
gi|321140625|gb|EFX36128.1| recombination protein O [Streptococcus infantis ATCC 700779]
Length = 256
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L +
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLAHFLLKVND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +++ + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVKTFPKINSDLFVMAYATYVAALADASLQDNQEDAPLFTFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +C S K GG +C ++
Sbjct: 125 EGLDYQVLTNIFEIQILTRFGISLNFNECTFCHRVGQAFDFSFKYGGCLCPDHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|307704643|ref|ZP_07641544.1| DNA repair protein RecO [Streptococcus mitis SK597]
gi|307621796|gb|EFO00832.1| DNA repair protein RecO [Streptococcus mitis SK597]
Length = 256
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHTGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|289670318|ref|ZP_06491393.1| DNA repair protein RecO [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 240
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVHGPRKHALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G L R P + ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLVGETMLAGFYISELLLRLAPRNDSVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARTHLASNLPLAWGLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|289423883|ref|ZP_06425676.1| DNA repair protein RecO [Peptostreptococcus anaerobius 653-L]
gi|289155660|gb|EFD04332.1| DNA repair protein RecO [Peptostreptococcus anaerobius 653-L]
Length = 248
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 10/229 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS-R 61
A++L + E +IIL + TR YG+ R Q + + I + N+ +
Sbjct: 4 INTQAVVLKALKFKENDIILTLFTRNYGKVSAIARGAQKPKSKLIATSQVFSYNNYVLRK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ E ++S F Y + + L E + L+ +L L +
Sbjct: 64 QNDMYVVYQSESIKSFYNIATDFDAFSYASFIMKLVEGVLVEGQTNNRLFVLLVRTLFLY 123
Query: 122 KIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I + L GF ++ C T V S G + +
Sbjct: 124 SEGVDNPKFILDAFIVKFLDYTGFKPNVDACTSCSSTNYRKAVFSISDGGIVCDKCIKKQ 183
Query: 181 EKMLV--------LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN 221
E L + L + I+ + +FL K L +
Sbjct: 184 ENYLKIDQTTIRLMQYILKNDIIDINKAEVAKVLVDELFFLLKKYLINY 232
>gi|183602375|ref|ZP_02963741.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683310|ref|YP_002469693.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191271|ref|YP_002968665.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196677|ref|YP_002970232.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|254790512|sp|B8DSY8|RECO_BIFA0 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|183218294|gb|EDT88939.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
HN019]
gi|219620960|gb|ACL29117.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249663|gb|ACS46603.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240251231|gb|ACS48170.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|289177386|gb|ADC84632.1| RecO [Bifidobacterium animalis subsp. lactis BB-12]
gi|295794264|gb|ADG33799.1| DNA repair protein RecO [Bifidobacterium animalis subsp. lactis V9]
Length = 239
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 7/205 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+A++L GE + I+ ++TR +G+ + + + + L+ V +
Sbjct: 4 YRDEAVVLRTAKLGEADRIITLLTRDHGKVRAVAKGVRRTKSRFGARLEPFMRVDLLL-G 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL--ELYDMLNIFL 118
+ E + ++ + ++ L E Y +L L
Sbjct: 63 EGRTFDSVRQAESISAYAGGITGDYATYTAASAMCETAADLLPAEHEPAAAQYRLLIAAL 122
Query: 119 NCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ L + G+ + L CVV G QD+ + S +GGA+C +
Sbjct: 123 GALSRHLHDPQAIALSYILRAMSLAGWTIRLDSCVVCGS-QDVEFFSASAGGAMCPNDHT 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
P A ++ V + + D L
Sbjct: 182 PDAVRVPVHVFDQLRALEQGDWPQL 206
>gi|119471907|ref|ZP_01614215.1| DNA repair protein recO (Recombination protein O) [Alteromonadales
bacterium TW-7]
gi|119445280|gb|EAW26570.1| DNA repair protein recO (Recombination protein O) [Alteromonadales
bacterium TW-7]
Length = 230
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 13/230 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L R Y + ++L+++ G+ R Q+ + + LQ + V++ +
Sbjct: 7 TAYLLHRRPYSDSQVMLDMLVEGVGQLRMIARISGRQATKHKAQLQPFQPLLVHYSGKYD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + LS G R +P EP + Y++ L
Sbjct: 67 LK---YINKFELHGAPLFLSGDELYCGFYLNELTNRIVPVNEPIEQAYELYKSHLENLNR 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + E LL+ +G+G+D + + L S S
Sbjct: 124 GVNLQSVLRSYEFQLLELLGYGVDFSFDTNGEPIDEALTYSYFSELGFVIQ---EDTRSG 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + L++Y L+ + + RE F
Sbjct: 181 FSGEQLQAIANHDFSRKDVLYMAK----QLSRYLLKPLLGNKPLKSRELF 226
>gi|322378207|ref|ZP_08052691.1| DNA repair protein RecO [Streptococcus sp. M334]
gi|321280837|gb|EFX57853.1| DNA repair protein RecO [Streptococcus sp. M334]
Length = 256
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + E+ +L G L+ +CV S K G +C +
Sbjct: 125 VGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|289662801|ref|ZP_06484382.1| DNA repair protein RecO [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 240
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L R++ E ++++EV+T Q+GR R R + LQ L++
Sbjct: 1 MLIEHERGFVLHARAWRETSLLVEVLTEQHGRVGLLARGVHGPRKHALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G L R P + ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLVGETMLAGFYISELLLRLAPRNDSVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARTHLASNLPLAWGLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|78046935|ref|YP_363110.1| DNA repair protein RecO [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325926992|ref|ZP_08188267.1| DNA replication and repair protein RecO [Xanthomonas perforans
91-118]
gi|90103527|sp|Q3BVV3|RECO_XANC5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78035365|emb|CAJ23010.1| putative DNA repair protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325542651|gb|EGD14118.1| DNA replication and repair protein RecO [Xanthomonas perforans
91-118]
Length = 240
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T Q+GR R Q R + LQ L++
Sbjct: 1 MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G L R P +P ELY
Sbjct: 61 SAVQRGELAQLRQAEALD---TAPRLVGDTMLAGFYISELLLRLAPRNDPVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L +GF DL
Sbjct: 118 ARTYLASDLPLAWGLRRFERDVLDGLGFAFDLQHDSDGQPIDPAARY 164
>gi|306826213|ref|ZP_07459547.1| recombination protein O [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304431489|gb|EFM34471.1| recombination protein O [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 256
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 2/203 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSLK 203
+ P +L + Q ID D+LK
Sbjct: 185 CHLNPNIPYLLNQFQAIDFDTLK 207
>gi|270291675|ref|ZP_06197891.1| DNA repair protein RecO [Streptococcus sp. M143]
gi|270279760|gb|EFA25601.1| DNA repair protein RecO [Streptococcus sp. M143]
Length = 256
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 EGLDYQVLTNIFEIQILTRFGLSLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|303254138|ref|ZP_07340252.1| DNA repair protein RecO [Streptococcus pneumoniae BS455]
gi|302598892|gb|EFL65924.1| DNA repair protein RecO [Streptococcus pneumoniae BS455]
Length = 256
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQILTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHCHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|167623019|ref|YP_001673313.1| DNA repair protein RecO [Shewanella halifaxensis HAW-EB4]
gi|167353041|gb|ABZ75654.1| DNA repair protein RecO [Shewanella halifaxensis HAW-EB4]
Length = 251
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 12/239 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRS 60
+ +L R + + ++I+ ++ GR R + ++ ILQ + +
Sbjct: 21 IIMERGYVLHSRHFRDSSVIVNLLVDGKGRVDAVARLGSAKNSIRSILQPFQPLIFQLQG 80
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + A L+ GL L R L + L+ + L
Sbjct: 81 KSELKT---LKQTEAASPAVPLTGDCLYSGLYLNELLIRCLSGQHNAENLFFDYHRTLIA 137
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ E LL+ +G L + + +
Sbjct: 138 MATKFDQSQLR-YFEHALLRELGTMPSLDFDPSDAPITASGCYRLEQTHGFTPVITTEFN 196
Query: 181 -EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
K + +QT+ + A + L + L + R F+ +
Sbjct: 197 RHKYFSGEMLVALNQQTLTMEHYSEAKR-----LMRQLLAPILGDKPLHSRSLFIKQTK 250
>gi|327472025|gb|EGF17464.1| recombination protein O [Streptococcus sanguinis SK408]
Length = 257
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHASKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + + L+ L L
Sbjct: 66 GLSYIEDYQNVVTYHRINEDLFIMAYASYVAALADASLQDNQSDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPEHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|324990084|gb|EGC22025.1| recombination protein O [Streptococcus sanguinis SK353]
Length = 257
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVSALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 YLNPNLPFLLDQFQAVRFSEL 206
>gi|307706918|ref|ZP_07643719.1| DNA repair protein RecO [Streptococcus mitis SK321]
gi|307617710|gb|EFN96876.1| DNA repair protein RecO [Streptococcus mitis SK321]
Length = 256
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIGQAFDFSFKYGACLCPDHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|320160272|ref|YP_004173496.1| DNA repair protein RecO [Anaerolinea thermophila UNI-1]
gi|319994125|dbj|BAJ62896.1| DNA repair protein RecO [Anaerolinea thermophila UNI-1]
Length = 258
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 4/170 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+A++L +GE + +L + TR+ G+ + + R L+ V+V
Sbjct: 11 EAVVLRHSDWGEADRVLVLFTREQGKVRALAKGARKMLSRKAGHLEPFTHVKVLLAQGKD 70
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ L + + Y I L RF + L+ +L L+
Sbjct: 71 FWIVTQAET-LNAFLSIRADLLRTAYAALVIELLDRFTSDDGENPALFQLLVHTLSRIAT 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVC 172
L LL GF L C+ G Q G V
Sbjct: 130 LEDPFIAVQYYHLRLLDLTGFRPQLFTCLRCGKEIQPENQFFDYQEGGVI 179
>gi|163791427|ref|ZP_02185836.1| DNA repair protein RecO, putative [Carnobacterium sp. AT7]
gi|159873291|gb|EDP67386.1| DNA repair protein RecO, putative [Carnobacterium sp. AT7]
Length = 270
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ I+L VR++ E + ++++ T ++G+ + FV+ + + + + + + R
Sbjct: 8 EGIVLSVRNHRENDQLVKLFTSRFGKRMFFVKGTRKQKNKLKTAVLPFTKATYIADIRDT 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ + + L Y + L + L+ ++ L
Sbjct: 68 GLCFIRDAKEVDQYKSMQTDIFLNAYATYILNLADAALDDGIVDGALFHKIDRCLTEIDE 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + E+ +L G +L C V G T+ S GG +C+S
Sbjct: 128 ETDPEIVVNIFEVQILPYFGVSPELRGCRVCGETEGPFDYSGSYGGLLCQSH 179
>gi|294139711|ref|YP_003555689.1| DNA repair protein RecO [Shewanella violacea DSS12]
gi|293326180|dbj|BAJ00911.1| DNA repair protein RecO [Shewanella violacea DSS12]
Length = 230
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 68/230 (29%), Gaps = 13/230 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +L R + + ++++ ++ +GR R ++ ILQ + R +
Sbjct: 2 ERGYVLHTRPFKDSSVLVNMLVDGHGRVDCVARLGSGKTSIKSILQPFQPLIFQLSGRTS 61
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
V A LS + G L R + L+ + L
Sbjct: 62 LRNMN---SVEAGSPAIPLSGEISFSGFYLNELLVRCIAVDHGAESLFFTYHKTLMAMA- 117
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
EL LLK +G L + + + ++G +
Sbjct: 118 AGFCESQLRYFELSLLKELGLMPTLRTDLGQDPIEADYYYRLLPDEGFVNALGPKTSH-- 175
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L +E ++A LK A +L + L + R F
Sbjct: 176 YSGEMLLALDEHRLEARHLKQAK-----YLMRLMLAPCLGDKPLKSRALF 220
>gi|148985379|ref|ZP_01818584.1| DNA repair protein RecO [Streptococcus pneumoniae SP3-BS71]
gi|147922337|gb|EDK73457.1| DNA repair protein RecO [Streptococcus pneumoniae SP3-BS71]
gi|301799221|emb|CBW31737.1| DNA repair protein RecO [Streptococcus pneumoniae OXC141]
Length = 256
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|15902080|ref|NP_357630.1| DNA repair protein RecO [Streptococcus pneumoniae R6]
gi|116517190|ref|YP_815471.1| DNA repair protein RecO [Streptococcus pneumoniae D39]
gi|225860077|ref|YP_002741586.1| DNA repair protein RecO [Streptococcus pneumoniae Taiwan19F-14]
gi|298230683|ref|ZP_06964364.1| DNA repair protein RecO [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254791|ref|ZP_06978377.1| DNA repair protein RecO [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501826|ref|YP_003723766.1| DNA repair protein RecO [Streptococcus pneumoniae TCH8431/19A]
gi|42559474|sp|Q8DRN4|RECO_STRR6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|122279548|sp|Q04N32|RECO_STRP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|15457567|gb|AAK98840.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077766|gb|ABJ55486.1| DNA repair protein RecO [Streptococcus pneumoniae D39]
gi|225726945|gb|ACO22796.1| DNA repair protein RecO [Streptococcus pneumoniae Taiwan19F-14]
gi|298237421|gb|ADI68552.1| DNA repair protein RecO [Streptococcus pneumoniae TCH8431/19A]
gi|327390451|gb|EGE88791.1| DNA repair protein RecO [Streptococcus pneumoniae GA04375]
Length = 256
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGTCLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|332364885|gb|EGJ42653.1| recombination protein O [Streptococcus sanguinis SK355]
Length = 257
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVAYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|307707933|ref|ZP_07644408.1| DNA repair protein RecO [Streptococcus mitis NCTC 12261]
gi|307615998|gb|EFN95196.1| DNA repair protein RecO [Streptococcus mitis NCTC 12261]
Length = 256
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +C S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECAFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|15899982|ref|NP_344586.1| DNA repair protein RecO [Streptococcus pneumoniae TIGR4]
gi|111656988|ref|ZP_01407795.1| hypothetical protein SpneT_02001779 [Streptococcus pneumoniae
TIGR4]
gi|149004191|ref|ZP_01828988.1| DNA repair protein RecO [Streptococcus pneumoniae SP14-BS69]
gi|149006801|ref|ZP_01830487.1| DNA repair protein RecO [Streptococcus pneumoniae SP18-BS74]
gi|149010901|ref|ZP_01832206.1| DNA repair protein RecO [Streptococcus pneumoniae SP19-BS75]
gi|149026553|ref|ZP_01836607.1| DNA repair protein RecO [Streptococcus pneumoniae SP23-BS72]
gi|168486713|ref|ZP_02711221.1| DNA repair protein RecO [Streptococcus pneumoniae CDC1087-00]
gi|168492324|ref|ZP_02716467.1| DNA repair protein RecO [Streptococcus pneumoniae CDC0288-04]
gi|169832502|ref|YP_001693558.1| DNA repair protein RecO [Streptococcus pneumoniae Hungary19A-6]
gi|182683007|ref|YP_001834755.1| DNA repair protein RecO [Streptococcus pneumoniae CGSP14]
gi|221230986|ref|YP_002510138.1| DNA repair protein RecO [Streptococcus pneumoniae ATCC 700669]
gi|225853664|ref|YP_002735176.1| DNA repair protein RecO [Streptococcus pneumoniae JJA]
gi|225855824|ref|YP_002737335.1| DNA repair protein RecO [Streptococcus pneumoniae P1031]
gi|225857898|ref|YP_002739408.1| DNA repair protein RecO [Streptococcus pneumoniae 70585]
gi|237649912|ref|ZP_04524164.1| DNA repair protein RecO [Streptococcus pneumoniae CCRI 1974]
gi|237822595|ref|ZP_04598440.1| DNA repair protein RecO [Streptococcus pneumoniae CCRI 1974M2]
gi|303260673|ref|ZP_07346636.1| DNA repair protein RecO [Streptococcus pneumoniae SP-BS293]
gi|303260837|ref|ZP_07346786.1| DNA repair protein RecO [Streptococcus pneumoniae SP14-BS292]
gi|303263164|ref|ZP_07349087.1| DNA repair protein RecO [Streptococcus pneumoniae BS397]
gi|303267607|ref|ZP_07353448.1| DNA repair protein RecO [Streptococcus pneumoniae BS457]
gi|303269477|ref|ZP_07355244.1| DNA repair protein RecO [Streptococcus pneumoniae BS458]
gi|307126264|ref|YP_003878295.1| DNA repair protein RecO [Streptococcus pneumoniae 670-6B]
gi|20139620|sp|Q97TA7|RECO_STRPN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238688354|sp|B1I7I6|RECO_STRPI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238691174|sp|B2IR26|RECO_STRPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|14971500|gb|AAK74226.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|147757853|gb|EDK64864.1| DNA repair protein RecO [Streptococcus pneumoniae SP14-BS69]
gi|147761716|gb|EDK68680.1| DNA repair protein RecO [Streptococcus pneumoniae SP18-BS74]
gi|147764537|gb|EDK71467.1| DNA repair protein RecO [Streptococcus pneumoniae SP19-BS75]
gi|147929224|gb|EDK80228.1| DNA repair protein RecO [Streptococcus pneumoniae SP23-BS72]
gi|168995004|gb|ACA35616.1| DNA repair protein RecO [Streptococcus pneumoniae Hungary19A-6]
gi|182628341|gb|ACB89289.1| DNA repair protein RecO [Streptococcus pneumoniae CGSP14]
gi|183570327|gb|EDT90855.1| DNA repair protein RecO [Streptococcus pneumoniae CDC1087-00]
gi|183573466|gb|EDT93994.1| DNA repair protein RecO [Streptococcus pneumoniae CDC0288-04]
gi|220673446|emb|CAR67913.1| DNA repair protein RecO [Streptococcus pneumoniae ATCC 700669]
gi|225721562|gb|ACO17416.1| DNA repair protein RecO [Streptococcus pneumoniae 70585]
gi|225724122|gb|ACO19975.1| DNA repair protein RecO [Streptococcus pneumoniae JJA]
gi|225724427|gb|ACO20279.1| DNA repair protein RecO [Streptococcus pneumoniae P1031]
gi|301793351|emb|CBW35714.1| DNA repair protein RecO [Streptococcus pneumoniae INV104]
gi|301801005|emb|CBW33670.1| DNA repair protein RecO [Streptococcus pneumoniae INV200]
gi|302637674|gb|EFL68160.1| DNA repair protein RecO [Streptococcus pneumoniae SP14-BS292]
gi|302638203|gb|EFL68675.1| DNA repair protein RecO [Streptococcus pneumoniae SP-BS293]
gi|302641011|gb|EFL71391.1| DNA repair protein RecO [Streptococcus pneumoniae BS458]
gi|302642857|gb|EFL73163.1| DNA repair protein RecO [Streptococcus pneumoniae BS457]
gi|302646937|gb|EFL77161.1| DNA repair protein RecO [Streptococcus pneumoniae BS397]
gi|306483326|gb|ADM90195.1| DNA repair protein RecO [Streptococcus pneumoniae 670-6B]
gi|332076495|gb|EGI86957.1| DNA repair protein RecO [Streptococcus pneumoniae GA17545]
gi|332204062|gb|EGJ18127.1| DNA repair protein RecO [Streptococcus pneumoniae GA47901]
Length = 256
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDKRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|319941432|ref|ZP_08015760.1| hypothetical protein HMPREF9464_00979 [Sutterella wadsworthensis
3_1_45B]
gi|319805052|gb|EFW01882.1| hypothetical protein HMPREF9464_00979 [Sutterella wadsworthensis
3_1_45B]
Length = 366
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 10/191 (5%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLAQ 64
+L R + E +++++V+T +GR R + ++ +L + + + W + +
Sbjct: 125 GFVLHARPWSESSMVVDVLTAHFGRVFLVARGAKRPGSNLRGLLTPFSPLALTWTGK-KE 183
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ E L + A L G + R + L+ L+
Sbjct: 184 AKVLTQAEWLGALAALR--DEALLSGFYVNELVLRLTEREDVHPGLFQSYVHVLSALADE 241
Query: 125 SV--IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
E LL + G+GL L + + W GA+ G P
Sbjct: 242 DPAVRQTGLRSFEAELLAHCGWGLALED---RDLQKGAEWFLLTPEGALKGVEGTPEDAA 298
Query: 183 MLVLPSFLWKE 193
L S LW +
Sbjct: 299 NLPFASMLWPK 309
>gi|332205069|gb|EGJ19132.1| DNA repair protein RecO [Streptococcus pneumoniae GA47368]
Length = 256
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLIKIFTEQVGKRMFFVKHAAQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDKRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|160933321|ref|ZP_02080709.1| hypothetical protein CLOLEP_02166 [Clostridium leptum DSM 753]
gi|156867198|gb|EDO60570.1| hypothetical protein CLOLEP_02166 [Clostridium leptum DSM 753]
Length = 254
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 3/212 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M D +I+ +S GE + ++ V+TR+ G FVR ++ + + L
Sbjct: 1 MQINTDGLIIREQSIGESDRLVTVLTREQGILRAFVRGAKAMKSRSASSTQLLCYSRLSI 60
Query: 61 RLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ E +E + PE+ + ++ L
Sbjct: 61 YEGREKYIIDEAEPIEVFFSLRTDFEKLSLAQYFCELALALAPEKMEAGDFLRLVLNALY 120
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGL 177
K +I +E+ +L GF DL C G + D ++ K G C S
Sbjct: 121 FLGKGKLPAAQIKAIVEMRMLSLAGFMPDLVCCAQCGAYEADQMYFMVKQGSLYCGSCYP 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
+A +++ + + F T
Sbjct: 181 QFAPGGVLMNRGVTTALRHTIYADFNKVFSFT 212
>gi|332360251|gb|EGJ38065.1| recombination protein O [Streptococcus sanguinis SK1056]
Length = 257
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPEHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|328954021|ref|YP_004371355.1| DNA repair protein recO [Desulfobacca acetoxidans DSM 11109]
gi|328454345|gb|AEB10174.1| DNA repair protein recO [Desulfobacca acetoxidans DSM 11109]
Length = 265
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 4/189 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
Q A+IL + YGE + ++ +T GR ++ + + + L+ +LV+ + ++
Sbjct: 5 QTLALILKTQDYGEADRLVVFLTPDEGRVTALAKHARKSKRRFANCLEPFSLVQAIYTAK 64
Query: 62 LAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L L E+ S + + EL+ L L
Sbjct: 65 PNLELARLDRGELVEAFPELRRSLDTLAAAACLTETAMEIVGAIDNLAELFAALQSSLTH 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKC-VVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + LL G+G C V T L+W S GG VC S
Sbjct: 125 LATGLPSWSLLCSYLIRLLALAGYGPSWQTCQVCRRNTDGLVWFSLNKGGIVCSSCLGQS 184
Query: 180 AEKMLVLPS 188
+ L
Sbjct: 185 QGERLYPLH 193
>gi|221632230|ref|YP_002521451.1| DNA repair protein RecO [Thermomicrobium roseum DSM 5159]
gi|221155865|gb|ACM04992.1| DNA repair protein RecO [Thermomicrobium roseum DSM 5159]
Length = 278
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 3/157 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++ +AI+L R GE + IL + T + G+ + + + + L +V +
Sbjct: 18 YRTEAIVLRRRDLGEADRILTLFTPKAGKLRVIAKGIRRPQSRLAGHLDLFVRTQVLL-A 76
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + +++E + R + +P LYD+L L
Sbjct: 77 RGRELDIVTQAQLVEPFTGLRREPWRAGWAGYLADLTDRATVDEDPQPALYDLLLECLRL 136
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ + E+ LL +G+ +L C G
Sbjct: 137 LAELPDPFAVVRRFEMRLLVLLGYQPELVVCPHCGKQ 173
>gi|163750602|ref|ZP_02157839.1| DNA repair protein RecO [Shewanella benthica KT99]
gi|161329597|gb|EDQ00588.1| DNA repair protein RecO [Shewanella benthica KT99]
Length = 230
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 13/230 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +L R + + ++++ ++ +GR R ++ ILQ + R +
Sbjct: 2 ERGYVLHTRPFKDSSVLVNMLIDGHGRVDCVARLGSGKTSIKSILQPFQPLIFQLSGRTS 61
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ A LS + G L R + L+ + L
Sbjct: 62 LRNM---SSLEAGSPAIPLSGDVSFAGFYLNELLVRCIAVDHGAESLFFTYHKTLMSMA- 117
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
EL LLK +G L + + + ++G +
Sbjct: 118 AGFCESQLRYFELSLLKELGLMPTLRTDLSQDPIEPDYYYRLLPDEGFVNALGPKTSH-- 175
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L +E ++A L+ A +L + L + R F
Sbjct: 176 YSGEMLLALDEHRLEASHLRQAK-----YLMRLMLAPCLGDKPLKSRALF 220
>gi|324995748|gb|EGC27659.1| recombination protein O [Streptococcus sanguinis SK678]
gi|327460128|gb|EGF06467.1| recombination protein O [Streptococcus sanguinis SK1]
Length = 257
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHASKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + + L+ L L
Sbjct: 66 GLSYIEDYQNVVTYHRINEDLFIMAYASYVAALADASLQDNQSDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|330957805|gb|EGH58065.1| DNA repair protein RecO [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 227
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 12/228 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T G +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-RGLFRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P ++D L
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFDHYAATLLALASGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL ++G+G + + + A V L
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDTDINGEPLAADGMYRLQ-VDAGLERVYLLQPGLFQG 181
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENF 232
+ E +L +A + L + AL ++ L RE F
Sbjct: 182 VELLAMAEADWSTPGALSAAKR-----LMRQALAVHLGGRPLVSRELF 224
>gi|157960867|ref|YP_001500901.1| DNA repair protein RecO [Shewanella pealeana ATCC 700345]
gi|157845867|gb|ABV86366.1| DNA repair protein RecO [Shewanella pealeana ATCC 700345]
Length = 229
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 12/236 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +L R + + ++I+ ++ GR R G + ++ I+Q + +
Sbjct: 2 ERGYVLHSRHFRDGSVIVNLLVDGKGRVDAVARLGGAKNSIRSIIQPFQPIIFQLHGKTD 61
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+V + A L+ GL L R L + L+ + L
Sbjct: 62 LKN---LKQVEAASPAVPLTGDCLYSGLYLNELLIRCLSVQHSAENLFFDYHRTLIAMAT 118
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA-EK 182
++ E LL +G L + + + + K
Sbjct: 119 EFNQSQLR-YFEHALLLELGTMPSLDFDPSDAPITASGFYRLEQDHGFTPVIATAFNQHK 177
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGKLL 237
+ ++T+ + A + L + L + R F K
Sbjct: 178 FFTGEMLVALNQRTLTTEHFLEAKK-----LMRQLLAPVLGDKPLHSRTLFAKKPK 228
>gi|325695245|gb|EGD37145.1| recombination protein O [Streptococcus sanguinis SK150]
Length = 257
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPEHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|187934258|ref|YP_001885108.1| DNA repair protein RecO [Clostridium botulinum B str. Eklund 17B]
gi|187722411|gb|ACD23632.1| DNA repair protein RecO [Clostridium botulinum B str. Eklund 17B]
Length = 249
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 19/249 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ A+I+ + + E + ++ + T + G+ + + + + L + +
Sbjct: 7 FESKAVIIKSQDFKENDKLVWLYTEELGKIAAIAKGAKKSKNKTFSITLPLCYGEYMLYK 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+++ S L + Y + P+ E +++ L
Sbjct: 67 GKNLYTIQEGKIINSFQGLLENLDKLTYSSYLCELIDICTPDDEKNKQIFIDLVTTFYLL 126
Query: 122 KIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSVGLPY 179
+ + EL LLKN G+ L+L C + S + G VC Y
Sbjct: 127 DTNALEYELLVRAFELKLLKNTGYSLELDSCCMCKKKIPSSNYISLSNYGGVCDECPKEY 186
Query: 180 ----AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYF---LNK---YALQHNIIHCHLLR 229
++ FL K + LTD L K Y + +N
Sbjct: 187 GLYISKATYNALKFLLKMKIDKVYR-----LNLTDKIKEELEKITSYLICNNYSKKPKS- 240
Query: 230 ENFLGKLLE 238
L + E
Sbjct: 241 LEMLKFIKE 249
>gi|297617860|ref|YP_003703019.1| DNA repair protein RecO [Syntrophothermus lipocalidus DSM 12680]
gi|297145697|gb|ADI02454.1| DNA repair protein RecO [Syntrophothermus lipocalidus DSM 12680]
Length = 250
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 3/153 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+AI+L + + E + I+ R+ G+ + + + +Q ++ SR
Sbjct: 7 TEAIVLKNQDFIETDKIVTFFARREGKLRAVAKGIKKPNSSLRGAVQPFCFSCLHL-SRG 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + ++E L+ L + L + L E +P E++D L C +
Sbjct: 66 RELDLITQGRIIEFFGYVRDDMVKTLHSLYLMELLDKSLAEADPHPEVFDATLTVLRCLE 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
EL L + +G+ L L KC++ G
Sbjct: 126 DGPFSPLAVRWFELKLARELGYALGLQKCILCG 158
>gi|327468022|gb|EGF13512.1| recombination protein O [Streptococcus sanguinis SK330]
Length = 257
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHASKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + + L+ L L
Sbjct: 66 GLSYIKDYQNVVTYHRINEDLFIMAYASYVAALADASLQDNQSDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|195977176|ref|YP_002122420.1| DNA repair protein RecO [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|238689840|sp|B4U5G6|RECO_STREM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|195973881|gb|ACG61407.1| DNA recombination and repair protein RecO [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 256
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 3/206 (1%)
Query: 1 MYWQ-DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M Q I+L ++Y E + ++++ T G+ + FV++ ++ P++Q +
Sbjct: 1 MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +E++ Y + +P+ EP +L+ L L+
Sbjct: 61 INDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L G ++ CV T S K G +C
Sbjct: 121 LIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNLPFDFSHKYSGVLCPQHYHED 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L QTI+ D LK
Sbjct: 181 EGRYGLDPNVIYLINRFQTINIDELK 206
>gi|315222411|ref|ZP_07864315.1| DNA repair protein RecO [Streptococcus anginosus F0211]
gi|315188496|gb|EFU22207.1| DNA repair protein RecO [Streptococcus anginosus F0211]
Length = 257
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 70/204 (34%), Gaps = 2/204 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ ++ P++Q + +
Sbjct: 5 ITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ + + Y + + + + L+ L L +
Sbjct: 65 DGLSYIDDYQEVTTFQHINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +C S G +C +
Sbjct: 125 QGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVGLPFDFSFTYNGVLCSEHYNKDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSLKS 204
+ P +L + Q + L++
Sbjct: 185 SHLDPNIPYLLDQFQAVQFSELEN 208
>gi|125716910|ref|YP_001034043.1| DNA repair protein RecO [Streptococcus sanguinis SK36]
gi|166221914|sp|A3CJY8|RECO_STRSV RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|125496827|gb|ABN43493.1| DNA repair protein recO, putative [Streptococcus sanguinis SK36]
gi|328944823|gb|EGG38984.1| recombination protein O [Streptococcus sanguinis SK1087]
Length = 257
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|293364584|ref|ZP_06611305.1| recombination protein O [Streptococcus oralis ATCC 35037]
gi|307702836|ref|ZP_07639784.1| DNA repair protein RecO [Streptococcus oralis ATCC 35037]
gi|291316842|gb|EFE57274.1| recombination protein O [Streptococcus oralis ATCC 35037]
gi|307623516|gb|EFO02505.1| DNA repair protein RecO [Streptococcus oralis ATCC 35037]
Length = 256
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C ++
Sbjct: 125 AGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPDHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|309800334|ref|ZP_07694504.1| DNA repair protein RecO [Streptococcus infantis SK1302]
gi|308116043|gb|EFO53549.1| DNA repair protein RecO [Streptococcus infantis SK1302]
Length = 256
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C ++
Sbjct: 125 EGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q I+ ++L
Sbjct: 185 CHLNPNIPYLLNQFQAINFETL 206
>gi|322436218|ref|YP_004218430.1| DNA repair protein RecO [Acidobacterium sp. MP5ACTX9]
gi|321163945|gb|ADW69650.1| DNA repair protein RecO [Acidobacterium sp. MP5ACTX9]
Length = 248
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
+AI+L + E ++++ + TR++G+ G R+ R + L+ V+ W R
Sbjct: 12 EAIVLRTWPFHEADLLVSLFTREFGKVKGIARHAMRSRRRFGGALEPMTHVKATWAERPK 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
Q L + S + L GL+ + + LP+ ++ + ++
Sbjct: 72 QELVRLDAFEIMSSPMTAKIDFVRLAGLELVAEVLDELPDGAVEDAVFRLALAVTGAMEV 131
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
V + + + +G+ +L +CVV G
Sbjct: 132 GRVWMPVTYFCLW-MTRLMGWMPELGRCVVCG 162
>gi|332077345|gb|EGI87806.1| DNA repair protein RecO [Streptococcus pneumoniae GA41301]
Length = 256
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDASLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|194366745|ref|YP_002029355.1| DNA repair protein RecO [Stenotrophomonas maltophilia R551-3]
gi|238693485|sp|B4SRK8|RECO_STRM5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|194349549|gb|ACF52672.1| DNA repair protein RecO [Stenotrophomonas maltophilia R551-3]
Length = 239
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 15/231 (6%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRV 56
M +DD +L R+Y E ++++EV++ Q+GR R + ++ LQ +R
Sbjct: 1 MLIEDDTGFVLHARAYRETSLLVEVLSAQHGRIGVLARGVSTAKGQVLRAALQPLQWIRF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L G R P ++P ELY
Sbjct: 61 SALQRGELAQLRGAEALD---AAPRLVGQAMLAGFYLSELTLRLAPRQDPLPELYLAYGE 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG---GAVCR 173
+ + + + E LL ++G G +L +
Sbjct: 118 ARARLGVGAGLAWTLRRFERELLTSLGLGFELDSASDGQPIDPAARYELDPQEGAQRLLS 177
Query: 174 SVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIH 224
++ DA L ++ +L + L H++
Sbjct: 178 ERAGERRAAATGSALLALAADEEPDAADL-ASLRLP----MRRVLAHHLGP 223
>gi|322386409|ref|ZP_08060039.1| recombination protein O [Streptococcus cristatus ATCC 51100]
gi|321269633|gb|EFX52563.1| recombination protein O [Streptococcus cristatus ATCC 51100]
Length = 265
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++IL R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSKSLILYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAAELLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ +ES+ + Y + + +P L+ L L+
Sbjct: 66 GLSYIEDYQAVESYGQIKDDLFVMAYASYVAALADASIQDNQPDPALFAFLQKTLDLMNQ 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ CV T S + GG +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCVFCHRTGLPFDFSFQYGGVLCPDHYHKDDHRS 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNIPFLLNQFQAVQFSEL 206
>gi|283779528|ref|YP_003370283.1| DNA repair protein RecO [Pirellula staleyi DSM 6068]
gi|283437981|gb|ADB16423.1| DNA repair protein RecO [Pirellula staleyi DSM 6068]
Length = 251
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ AI+L V + E +++ + T +G+ + + + + + + R+ + +
Sbjct: 5 KTTAIVLRVVDFSETSVVTTLFTEHFGKVSALAKGARRPKGPFENAIDLLAVARIVFIRK 64
Query: 62 LAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L LE + S G L +P EL+ N L
Sbjct: 65 SSDALDLLTEAKLERRFRSAERSLERLYAGFYLAELLTEMTDTGDPHPELFHASNRVLAE 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
S + + IEL L+++G LT+C + G
Sbjct: 125 LDAGSPVAPLVAGIELFALRDLGHLPLLTECAICGN 160
>gi|297539122|ref|YP_003674891.1| DNA repair protein RecO [Methylotenera sp. 301]
gi|297258469|gb|ADI30314.1| DNA repair protein RecO [Methylotenera sp. 301]
Length = 245
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 15/235 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++++E+ +GR + + R + +LQ+ + W +L
Sbjct: 16 YVLHTYPFKETSLVVELFAYGFGRVATTAKGARRPRSAMRGMLQSFQPLLATWSGKLELK 75
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ LL + G L R LP +P L++ + L
Sbjct: 76 TLH---SLEWGSGLLLLKGEALMCGFYLNELLLRLLPREDPHESLFEYYSATLKILANGE 132
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM-- 183
+ + EL LL+ +G+ + L V + + + G P
Sbjct: 133 NLATTLRRFELKLLQELGYAIPLQHDVSNAQILEDFNYRYIAEHGATKLNGSPARVNNGI 192
Query: 184 --LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
L + + + + + Q L +Y L H + R+ +
Sbjct: 193 QLLGKTLIDMASDDYNNIQTQQQSKQ-----LMRYLLAHYLGDKPLHTRQLLIDL 242
>gi|269127439|ref|YP_003300809.1| DNA repair protein RecO [Thermomonospora curvata DSM 43183]
gi|268312397|gb|ACY98771.1| DNA repair protein RecO [Thermomonospora curvata DSM 43183]
Length = 270
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 69/181 (38%), Gaps = 6/181 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ I+L + GE + I+ V+TR+ GR + + + L+ V + +
Sbjct: 10 YRDEGIVLRTQKLGEADRIVTVLTRRSGRIRAAAKGVRRTRSKFGARLEPFTHVDLQFYE 69
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + +L + + + G+ + + L E L L +
Sbjct: 70 RRSLDLITQAETLRPYGEPLVTDYPRYTAGVAMLETAEK-LTAEEKEPALRQFLLLLGGL 128
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+++ G+ L +C G L + +GGA+C +
Sbjct: 129 RTLVDRSHDPRLVLDAYLLRSLSVAGWAPALDECARCGSRGRLRVFAIAAGGALCGACRQ 188
Query: 178 P 178
P
Sbjct: 189 P 189
>gi|168483659|ref|ZP_02708611.1| DNA repair protein RecO [Streptococcus pneumoniae CDC1873-00]
gi|172043032|gb|EDT51078.1| DNA repair protein RecO [Streptococcus pneumoniae CDC1873-00]
Length = 256
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLIKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDKRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|103486573|ref|YP_616134.1| recombinational DNA repair protein (RecF pathway)-like protein
[Sphingopyxis alaskensis RB2256]
gi|98976650|gb|ABF52801.1| Recombinational DNA repair protein (RecF pathway)-like protein
[Sphingopyxis alaskensis RB2256]
Length = 192
Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 50/231 (21%), Positives = 81/231 (35%), Gaps = 44/231 (19%)
Query: 13 RSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFE 72
R++GE IL +T + G G+VR G+S R++PIL GN V + RSR + LG E
Sbjct: 2 RAHGEHGAILRALTHEAGLVAGYVRGGRSRRLRPILMPGNRVALELRSRTEEQLGGATVE 61
Query: 73 VLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS---VIGK 129
+LES L LPE +P LY L+ L +
Sbjct: 62 LLESRAPLLGEPLAAAAIDWVTSLTVAVLPEGQPFPALYIALSAVLEAIGVAPSARQWAL 121
Query: 130 IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSF 189
+ EL+LL +GFGL+
Sbjct: 122 ALGRYELLLLAELGFGLEDKPRAA------------------------------------ 145
Query: 190 LWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
+ + +T +F+++ L +R+ + +L ++
Sbjct: 146 -----SSPSMAEMLDFLSVTGHFIDRDLLDGRNRALAGVRQRLIDRLGRVV 191
>gi|327463376|gb|EGF09695.1| recombination protein O [Streptococcus sanguinis SK1057]
Length = 257
Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|328957482|ref|YP_004374868.1| DNA repair protein RecO [Carnobacterium sp. 17-4]
gi|328673806|gb|AEB29852.1| DNA repair protein RecO [Carnobacterium sp. 17-4]
Length = 269
Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+ I+L VR++ E + ++++ T ++G+ + FV+ + + + + R
Sbjct: 8 EGIVLSVRNHRENDQLVKLFTNRFGKRMFFVKGTRKQKNKLRTAVLPFTKATYIADIRDT 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ + + L Y + L + L+ ++ L
Sbjct: 68 GLCFIRDAKEVDQYKSMQTDIFLNAYATYILNLADAALDDGIVDSTLFHKIDRCLTEIDE 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + E+ +L G +L C V G T+ S GG +C++
Sbjct: 128 ETDPEIVVNIFEIQILPYFGVSPELRGCRVCGNTEGPFDYSGSYGGLLCQNH 179
>gi|324992721|gb|EGC24642.1| recombination protein O [Streptococcus sanguinis SK405]
Length = 257
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLEMMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPEHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|297242778|ref|ZP_06926716.1| DNA repair protein RecO [Gardnerella vaginalis AMD]
gi|296888989|gb|EFH27723.1| DNA repair protein RecO [Gardnerella vaginalis AMD]
Length = 248
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 14/191 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+A++L GE + I+ ++T+++G+ + + + + L+ V + +
Sbjct: 4 YRDEAVVLRTFPLGEADRIVVLLTKRHGKVRAVAKGVRRLKSRFGGRLEPLMRVDLLL-A 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
+ + + ++ ++ + ++ + L E E L
Sbjct: 63 QGKSLDVVSQAVSIAAYAGEICADYTSYEYANVMLEVVDLLVSNEYTDEYRREYQDTLGQ 122
Query: 119 ---------NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ K I + L L G+ L CVV G +DL + SP GG
Sbjct: 123 YRLLTAALLSLSKHKHSPDAIGMSYILRALSLAGWSPRLQACVVCGKNEDLCYFSPCIGG 182
Query: 170 AVCRSVGLPYA 180
+C S P +
Sbjct: 183 MMCASDHTPDS 193
>gi|306832521|ref|ZP_07465661.1| recombination protein O [Streptococcus bovis ATCC 700338]
gi|304425279|gb|EFM28405.1| recombination protein O [Streptococcus bovis ATCC 700338]
Length = 251
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 3/206 (1%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ ++L R+Y E + ++++ T G+H+ FV++ R ++Q + +
Sbjct: 1 MQTKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTAAKFILK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ +ES Y +P+ +L+ N L+
Sbjct: 61 INDTGLSFIEDYKEVESFKEINADLFRLSYASYVTALADAAVPDGVADPQLFTFFNKTLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ LL+ G L+ +C S K G +C
Sbjct: 121 LMEEGLDYEILTNIFEIQLLERFGVSLNFHECAFCHRIGLPFDFSHKYSGLLCPEHYGKD 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L Q I D LK
Sbjct: 181 DYRSHLDPNVLYLVDRFQAIHFDELK 206
>gi|325697191|gb|EGD39077.1| recombination protein O [Streptococcus sanguinis SK160]
Length = 257
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 64/187 (34%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAVKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMND 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLPSFL 190
+ P+ L
Sbjct: 186 HLNPNLL 192
>gi|331265463|ref|YP_004325093.1| DNA repair protein RecO [Streptococcus oralis Uo5]
gi|326682135|emb|CBY99751.1| DNA repair protein RecO [Streptococcus oralis Uo5]
Length = 256
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + F+++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFIKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDSPLFAFLKKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C ++
Sbjct: 125 AGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPDHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|332363629|gb|EGJ41409.1| recombination protein O [Streptococcus sanguinis SK49]
Length = 257
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTSLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|315612133|ref|ZP_07887049.1| recombination protein O [Streptococcus sanguinis ATCC 49296]
gi|315315796|gb|EFU63832.1| recombination protein O [Streptococcus sanguinis ATCC 49296]
Length = 256
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C ++
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPDHFHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|325689108|gb|EGD31115.1| recombination protein O [Streptococcus sanguinis SK115]
Length = 257
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|257486566|ref|ZP_05640607.1| DNA repair protein RecO [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|331010048|gb|EGH90104.1| DNA repair protein RecO [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 227
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDGDINGE 152
>gi|332686713|ref|YP_004456487.1| DNA recombination and repair protein RecO [Melissococcus plutonius
ATCC 35311]
gi|332370722|dbj|BAK21678.1| DNA recombination and repair protein RecO [Melissococcus plutonius
ATCC 35311]
Length = 265
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 2/189 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--R 61
IIL + + EK+ ++++ T +G+ + V++ I + + R
Sbjct: 5 DTKGIILFTKQFKEKDKLVKIFTESHGKLMFLVKDAYRKNNPLIPAILPFTKAVYIGDFR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + S + Y + + + +R LY N L
Sbjct: 65 HDGLSFLNNSKEVTSFRNIQQDIFINAYATYILNLVDAAIEDRVYDPLLYQFTNQALTAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ I E+ LL G + C V G T SPK G +C + +
Sbjct: 125 EEGKDAEIITNIFEVQLLHRFGVIPEWHACAVCGNTNGKFDFSPKYSGILCEKHWILDSH 184
Query: 182 KMLVLPSFL 190
+ P +
Sbjct: 185 RYHSDPRCI 193
>gi|171778348|ref|ZP_02919527.1| hypothetical protein STRINF_00378 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282879|gb|EDT48303.1| hypothetical protein STRINF_00378 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 251
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 3/206 (1%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ ++L R+Y E + ++++ T G+H+ FV++ R +Q + + +
Sbjct: 1 MQNKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHASKSRFNSAIQPLTVAKFILK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ ++S Y +P+ +L+ L L
Sbjct: 61 INETGLSFIEDYKEVDSFKEINADLFKLSYASYVTSLADAAVPDGVADPQLFAFLKKTLL 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L+ G L+ +C S K G +C
Sbjct: 121 LMEEGLDYEILTNIFEIQILERFGVSLNFHECAFCHRVGLPFDFSHKYSGLLCPEHYAKD 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L Q I D LK
Sbjct: 181 EHRSHLDPNVLYLVDRFQAIQFDDLK 206
>gi|322376091|ref|ZP_08050601.1| DNA repair protein RecO [Streptococcus sp. C300]
gi|321279041|gb|EFX56084.1| DNA repair protein RecO [Streptococcus sp. C300]
Length = 256
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLAIFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C ++
Sbjct: 125 AGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPDHFHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|312864401|ref|ZP_07724634.1| DNA repair protein RecO [Streptococcus downei F0415]
gi|311100122|gb|EFQ58333.1| DNA repair protein RecO [Streptococcus downei F0415]
Length = 251
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y E + ++++ T G+ + FV++ ++ ++Q L +
Sbjct: 5 ESRGLVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLASVIQPLTLADFLMKINED 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ +E+ L Y + + + + L+ L L +
Sbjct: 65 GLSYLDDYREVETFKTINEDIFLLAYASYLVALADAAIEDGQHDALLFAFLVKTLELMEQ 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L+ G L+ CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEVQILERFGVRLNFHDCVFCHRVGLPFDFSYKYSGLLCPQHYEKDSYRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLK 203
+ P +L QTI + L+
Sbjct: 185 HLDPNVPYLLDRFQTISFEDLQ 206
>gi|325686323|gb|EGD28353.1| recombination protein O [Streptococcus sanguinis SK72]
Length = 257
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYNRINEDLFIMAYASYVAALADASLQDNHPDPVLFAFLQKTLELMNS 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPEHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|288904245|ref|YP_003429466.1| DNA repair and homologous recombination RecO [Streptococcus
gallolyticus UCN34]
gi|306830272|ref|ZP_07463443.1| recombination protein O [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977221|ref|YP_004286937.1| DNA repair protein recO [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288730970|emb|CBI12514.1| putative DNA repair and homologous recombination RecO
[Streptococcus gallolyticus UCN34]
gi|304427519|gb|EFM30620.1| recombination protein O [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177149|emb|CBZ47193.1| DNA repair protein recO [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 251
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 3/206 (1%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ ++L R+Y E + ++++ T G+H+ FV++ R ++Q + + +
Sbjct: 1 MQTKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTVAKFILK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ ++S Y +P+ +L+ +N L+
Sbjct: 61 INDTGLSFIEDYKEVDSFKEINADLFKLSYASYVTALADAAVPDGVADPQLFAFVNKTLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ LL+ G L+ +C S K G +C
Sbjct: 121 LMEEGLDYEILTNIFEIQLLERFGVSLNFHECAFCHRVGLPFDFSHKYSGLLCPEHYGKD 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L Q I D LK
Sbjct: 181 DYRSHLDPNVLYLVDRFQAIHFDELK 206
>gi|257068870|ref|YP_003155125.1| DNA replication and repair protein RecO [Brachybacterium faecium
DSM 4810]
gi|256559688|gb|ACU85535.1| DNA replication and repair protein RecO [Brachybacterium faecium
DSM 4810]
Length = 244
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 77/217 (35%), Gaps = 17/217 (7%)
Query: 1 MY---WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVR 55
M ++DDAI+L GE + I+ ++TR++G+ + + R L+ LV
Sbjct: 1 MQQKLYRDDAIVLRTHPLGEADRIITLLTRRHGKVRAVAKGVRRTGSRFGARLEPFTLVD 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
V + + + + +E+ + + +++ L + L
Sbjct: 61 VQLHAGRSLHT-VTQVVTIEAFAVGISAEYGRFTAASAMLETTDRLTDEFVDPNQRGFLM 119
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + + ++ LL+ + G+ +L C G + ++GG VC
Sbjct: 120 LVGALRAMAEGRIPPPLVLDSFLLRTLAVSGWAPELRVCASCGADGPHHAIDIRAGGLVC 179
Query: 173 RSV----GLPYAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ + + FL D +++ A
Sbjct: 180 TPCRRPGAIAVRQSTIEHMIFLLAG----DWENVLDA 212
>gi|283782940|ref|YP_003373694.1| DNA repair protein RecO [Gardnerella vaginalis 409-05]
gi|298253428|ref|ZP_06977220.1| DNA repair protein RecO [Gardnerella vaginalis 5-1]
gi|283442174|gb|ADB14640.1| DNA repair protein RecO [Gardnerella vaginalis 409-05]
gi|297532823|gb|EFH71709.1| DNA repair protein RecO [Gardnerella vaginalis 5-1]
Length = 248
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 14/191 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+A++L GE + I+ ++T+++G+ + + + + L+ V + +
Sbjct: 4 YRDEAVVLRTFPLGEADRIVVLLTKRHGKVRAVAKGVRRLKSRFGGRLEPLMRVDLLL-A 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
+ + + ++ ++ + ++ + L E E L
Sbjct: 63 QGKSLDVVSQAVSIAAYAGEICADYTSYEYANVMLEVVDLLVSNEYTDEYRREYQDTLGQ 122
Query: 119 ---------NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ K I V L L G+ L CVV G +DL + SP +GG
Sbjct: 123 YRLLTAALLSLSKHKHSPDAIGVSYILRALSLAGWSPRLQACVVCGKNEDLCYFSPCAGG 182
Query: 170 AVCRSVGLPYA 180
+C S P +
Sbjct: 183 MMCASDHTPDS 193
>gi|327330803|gb|EGE72549.1| DNA repair protein RecO [Propionibacterium acnes HL097PA1]
Length = 246
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G+ R + S + L NLV +
Sbjct: 4 YRDQAVVLRTHKLGEADRIVSMLSREHGKIRAVARGIRRTSSKFGARLDPFNLVDLQLVQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + SLF + +P Y +L L
Sbjct: 64 GRNLDVVAQVECLHPYSAPLRQDYSLFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 123
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
P + L L G+ DL CV G SP GG VC +
Sbjct: 124 VLGQGTTDGPRPPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCIN 183
Query: 175 VGLP 178
P
Sbjct: 184 CQPP 187
>gi|314925459|gb|EFS89290.1| DNA repair protein RecO [Propionibacterium acnes HL036PA3]
Length = 237
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G+ R + S + L NLV +
Sbjct: 4 YRDQAVVLRTHKLGEADRIVSMLSREHGKIRAVARGIRRTSSKFGARLDPFNLVDLQLVQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + SLF + +P Y +L L
Sbjct: 64 GRNLDVVAQVECLHPYSAPLRQDYSLFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 123
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
P + L L G+ DL CV G SP GG VC +
Sbjct: 124 VLGQGTTDGPRPPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCIN 183
Query: 175 VGLP 178
P
Sbjct: 184 CQPP 187
>gi|314918332|gb|EFS82163.1| DNA repair protein RecO [Propionibacterium acnes HL050PA1]
Length = 290
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G+ R + S + L NLV +
Sbjct: 48 YRDQAVVLRTHKLGEADRIVSMLSREHGKIRAVARGIRRTSSKFGARLDPFNLVDLQLVQ 107
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + SLF + +P Y +L L
Sbjct: 108 GRNLDVVAQVECLHPYSAPLRQDYSLFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 167
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
P + L L G+ DL CV G SP GG VC +
Sbjct: 168 VLGQGTTDGPRPPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCIN 227
Query: 175 VGLP 178
P
Sbjct: 228 CQPP 231
>gi|50842428|ref|YP_055655.1| DNA repair protein RecO [Propionibacterium acnes KPA171202]
gi|282854112|ref|ZP_06263449.1| DNA repair protein RecO [Propionibacterium acnes J139]
gi|289425304|ref|ZP_06427081.1| DNA repair protein RecO [Propionibacterium acnes SK187]
gi|289427297|ref|ZP_06429013.1| DNA repair protein RecO [Propionibacterium acnes J165]
gi|295130504|ref|YP_003581167.1| DNA repair protein RecO [Propionibacterium acnes SK137]
gi|61214916|sp|Q6A969|RECO_PROAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|50840030|gb|AAT82697.1| DNA repair protein RecO [Propionibacterium acnes KPA171202]
gi|282583565|gb|EFB88945.1| DNA repair protein RecO [Propionibacterium acnes J139]
gi|289154282|gb|EFD02970.1| DNA repair protein RecO [Propionibacterium acnes SK187]
gi|289159766|gb|EFD07954.1| DNA repair protein RecO [Propionibacterium acnes J165]
gi|291376643|gb|ADE00498.1| DNA repair protein RecO [Propionibacterium acnes SK137]
gi|313764549|gb|EFS35913.1| DNA repair protein RecO [Propionibacterium acnes HL013PA1]
gi|313772412|gb|EFS38378.1| DNA repair protein RecO [Propionibacterium acnes HL074PA1]
gi|313792238|gb|EFS40339.1| DNA repair protein RecO [Propionibacterium acnes HL110PA1]
gi|313801813|gb|EFS43047.1| DNA repair protein RecO [Propionibacterium acnes HL110PA2]
gi|313807422|gb|EFS45909.1| DNA repair protein RecO [Propionibacterium acnes HL087PA2]
gi|313809930|gb|EFS47651.1| DNA repair protein RecO [Propionibacterium acnes HL083PA1]
gi|313813032|gb|EFS50746.1| DNA repair protein RecO [Propionibacterium acnes HL025PA1]
gi|313816091|gb|EFS53805.1| DNA repair protein RecO [Propionibacterium acnes HL059PA1]
gi|313820231|gb|EFS57945.1| DNA repair protein RecO [Propionibacterium acnes HL036PA1]
gi|313822960|gb|EFS60674.1| DNA repair protein RecO [Propionibacterium acnes HL036PA2]
gi|313825112|gb|EFS62826.1| DNA repair protein RecO [Propionibacterium acnes HL063PA1]
gi|313827681|gb|EFS65395.1| DNA repair protein RecO [Propionibacterium acnes HL063PA2]
gi|313830261|gb|EFS67975.1| DNA repair protein RecO [Propionibacterium acnes HL007PA1]
gi|313834062|gb|EFS71776.1| DNA repair protein RecO [Propionibacterium acnes HL056PA1]
gi|313838639|gb|EFS76353.1| DNA repair protein RecO [Propionibacterium acnes HL086PA1]
gi|314915545|gb|EFS79376.1| DNA repair protein RecO [Propionibacterium acnes HL005PA4]
gi|314919987|gb|EFS83818.1| DNA repair protein RecO [Propionibacterium acnes HL050PA3]
gi|314923086|gb|EFS86917.1| DNA repair protein RecO [Propionibacterium acnes HL001PA1]
gi|314932000|gb|EFS95831.1| DNA repair protein RecO [Propionibacterium acnes HL067PA1]
gi|314955869|gb|EFT00269.1| DNA repair protein RecO [Propionibacterium acnes HL027PA1]
gi|314958350|gb|EFT02453.1| DNA repair protein RecO [Propionibacterium acnes HL002PA1]
gi|314960095|gb|EFT04197.1| DNA repair protein RecO [Propionibacterium acnes HL002PA2]
gi|314962896|gb|EFT06996.1| DNA repair protein RecO [Propionibacterium acnes HL082PA1]
gi|314966855|gb|EFT10954.1| DNA repair protein RecO [Propionibacterium acnes HL082PA2]
gi|314968026|gb|EFT12125.1| DNA repair protein RecO [Propionibacterium acnes HL037PA1]
gi|314973267|gb|EFT17363.1| DNA repair protein RecO [Propionibacterium acnes HL053PA1]
gi|314975942|gb|EFT20037.1| DNA repair protein RecO [Propionibacterium acnes HL045PA1]
gi|314978301|gb|EFT22395.1| DNA repair protein RecO [Propionibacterium acnes HL072PA2]
gi|314981197|gb|EFT25291.1| DNA repair protein RecO [Propionibacterium acnes HL110PA3]
gi|314984039|gb|EFT28131.1| DNA repair protein RecO [Propionibacterium acnes HL005PA1]
gi|314987802|gb|EFT31893.1| DNA repair protein RecO [Propionibacterium acnes HL005PA2]
gi|314990024|gb|EFT34115.1| DNA repair protein RecO [Propionibacterium acnes HL005PA3]
gi|315078111|gb|EFT50162.1| DNA repair protein RecO [Propionibacterium acnes HL053PA2]
gi|315080741|gb|EFT52717.1| DNA repair protein RecO [Propionibacterium acnes HL078PA1]
gi|315084411|gb|EFT56387.1| DNA repair protein RecO [Propionibacterium acnes HL027PA2]
gi|315085751|gb|EFT57727.1| DNA repair protein RecO [Propionibacterium acnes HL002PA3]
gi|315088831|gb|EFT60807.1| DNA repair protein RecO [Propionibacterium acnes HL072PA1]
gi|315091769|gb|EFT63745.1| DNA repair protein RecO [Propionibacterium acnes HL110PA4]
gi|315093224|gb|EFT65200.1| DNA repair protein RecO [Propionibacterium acnes HL060PA1]
gi|315096180|gb|EFT68156.1| DNA repair protein RecO [Propionibacterium acnes HL038PA1]
gi|315098441|gb|EFT70417.1| DNA repair protein RecO [Propionibacterium acnes HL059PA2]
gi|315101201|gb|EFT73177.1| DNA repair protein RecO [Propionibacterium acnes HL046PA1]
gi|315103272|gb|EFT75248.1| DNA repair protein RecO [Propionibacterium acnes HL050PA2]
gi|315105478|gb|EFT77454.1| DNA repair protein RecO [Propionibacterium acnes HL030PA1]
gi|315108423|gb|EFT80399.1| DNA repair protein RecO [Propionibacterium acnes HL030PA2]
gi|327326096|gb|EGE67886.1| DNA repair protein RecO [Propionibacterium acnes HL096PA2]
gi|327327681|gb|EGE69457.1| DNA repair protein RecO [Propionibacterium acnes HL103PA1]
gi|327332033|gb|EGE73770.1| DNA repair protein RecO [Propionibacterium acnes HL096PA3]
gi|327443236|gb|EGE89890.1| DNA repair protein RecO [Propionibacterium acnes HL013PA2]
gi|327446021|gb|EGE92675.1| DNA repair protein RecO [Propionibacterium acnes HL043PA2]
gi|327448000|gb|EGE94654.1| DNA repair protein RecO [Propionibacterium acnes HL043PA1]
gi|327450876|gb|EGE97530.1| DNA repair protein RecO [Propionibacterium acnes HL087PA3]
gi|327453047|gb|EGE99701.1| DNA repair protein RecO [Propionibacterium acnes HL092PA1]
gi|327453776|gb|EGF00431.1| DNA repair protein RecO [Propionibacterium acnes HL083PA2]
gi|328753563|gb|EGF67179.1| DNA repair protein RecO [Propionibacterium acnes HL020PA1]
gi|328754295|gb|EGF67911.1| DNA repair protein RecO [Propionibacterium acnes HL087PA1]
gi|328754452|gb|EGF68068.1| DNA repair protein RecO [Propionibacterium acnes HL025PA2]
gi|328760402|gb|EGF73970.1| DNA repair protein RecO [Propionibacterium acnes HL099PA1]
gi|332675340|gb|AEE72156.1| DNA repair protein RecO [Propionibacterium acnes 266]
Length = 246
Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G+ R + S + L NLV +
Sbjct: 4 YRDQAVVLRTHKLGEADRIVSMLSREHGKIRAVARGIRRTSSKFGARLDPFNLVDLQLVQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + SLF + +P Y +L L
Sbjct: 64 GRNLDVVAQVECLHPYSAPLRQDYSLFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 123
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
P + L L G+ DL CV G SP GG VC +
Sbjct: 124 VLGQGTTDGPRPPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCIN 183
Query: 175 VGLP 178
P
Sbjct: 184 CQPP 187
>gi|91794115|ref|YP_563766.1| DNA repair protein RecO [Shewanella denitrificans OS217]
gi|91716117|gb|ABE56043.1| DNA repair protein RecO [Shewanella denitrificans OS217]
Length = 240
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 15/239 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM-QPILQAGNLVRVNWRSRLA- 63
A +L R + E ++IL ++ GR R G R + I+Q + V + ++
Sbjct: 3 RAYVLHHRPFRESSVILNMLVDGIGRVDAITRLGSGKRSIKSIVQPFQPLLVQFNNQSEH 62
Query: 64 QNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ G + LE+ + L+ G L R L L+ + L
Sbjct: 63 KSQGLRNIKQLEAAAPAMPLAGDSLYSGFYLNELLVRLLSVEHQGESLFVEYHRALVALA 122
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV-----CRSVGL 177
+ EL LLK +G L V + S
Sbjct: 123 GEFNAASLR-YFELALLKELGALPSLAVDVQGEPLLATSHYRFLADEGFLPVLQSSSGAF 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+++ +L + E + A L A L +Y L + + L R+ F
Sbjct: 182 THSKGVLEGGMLIALNEHKLTALQLNQAKG-----LMRYLLTPLLGNKPLLSRQLFANN 235
>gi|332365387|gb|EGJ43150.1| recombination protein O [Streptococcus sanguinis SK1059]
Length = 257
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 2/201 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q + +
Sbjct: 6 TSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDD 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + ++ + Y L + +P L+ L L
Sbjct: 66 GLSYIEDYQDVVTYHRINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLEMMNN 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ C T S K G +C +
Sbjct: 126 GLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTGLPFDFSFKYSGVLCPDHYHQDERRC 185
Query: 184 LVLP--SFLWKEEQTIDADSL 202
+ P FL + Q + L
Sbjct: 186 HLNPNLPFLLDQFQAVRFSEL 206
>gi|327540470|gb|EGF27055.1| DNA repair protein recO [Rhodopirellula baltica WH47]
Length = 276
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
AI+L + E ++I+ ++T+ GR + + + + L ++ + +
Sbjct: 5 STTAIVLRTVDFSETSLIVTLLTKDLGRISALAKGARRLKGPFEGSLDLLSVCAITLIDK 64
Query: 62 LAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L L S G L + + +P EL+DM +
Sbjct: 65 PGDTLDLLTESKLRRRFRGAQRSLERLHAGYYIAEMLRLLVDDDDPHRELFDMTLSAMGM 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ K + + L+ +G +C V G
Sbjct: 125 IDGEGHVAKTLLAFDAQCLRLLGHSPATQRCTVCG 159
>gi|296133899|ref|YP_003641146.1| DNA repair protein RecO [Thermincola sp. JR]
gi|296032477|gb|ADG83245.1| DNA repair protein RecO [Thermincola potens JR]
Length = 250
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 1/156 (0%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ DA++L VR + E + I+ + T G+ + + + + N+
Sbjct: 2 MRLYKTDALVLRVRDFSEADRIVTLYTYSRGKVQAIAKGSRKTKSRKRGAVQPFTYGNFL 61
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++L + + L + L + L E +L +
Sbjct: 62 LYQGRSLDTITQCEPKESFSHLREDLVKLAYSTYLTELVDGFTAEGEPNEQVFLLLLTTF 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ G + EL LL +G+ L CV
Sbjct: 122 YLLLKDNPGLLVRAFELKLLNILGYCPQLESCVHCH 157
>gi|291166724|gb|EFE28770.1| DNA repair protein RecO [Filifactor alocis ATCC 35896]
Length = 253
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 14/208 (6%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
MY + I+L Y + + IL + +++ G+ + +N + + + + N+
Sbjct: 1 MYINTEGIVLKSVKYKDSDAILTLFSKKMGKVTVYAKNVRKMNHSSMAVSQSFAYGNFVL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQS-IVPLFRFLPEREPCLELYDMLNIFLN 119
R + + + + L + + + L E + L L L
Sbjct: 61 RTQGKMLQLSSFECKENFYFLTEDIDKTFLAYYFVELSEKLLVENQTNHRLLQALLESLY 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLW-------------VSPK 166
K + + E L+ G+ ++KC+ G+ +D K
Sbjct: 121 ALKDIEKYELVKLYFECKALRFCGYQPQVSKCLKCGIIRDNSIPFYFQVEDGGVYCYHCK 180
Query: 167 SGGAVCRSVGLPYAEKMLVLPSFLWKEE 194
S Y L F+ +E
Sbjct: 181 SETEGHNIFYTQYDNTTYQLLDFMMRES 208
>gi|225869508|ref|YP_002745455.1| DNA repair protein RecO [Streptococcus equi subsp. equi 4047]
gi|225698912|emb|CAW91910.1| DNA repair protein RecO [Streptococcus equi subsp. equi 4047]
Length = 256
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 3/206 (1%)
Query: 1 MYWQ-DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M Q I+L ++Y E + ++++ T G+ + FV++ ++ P++Q +
Sbjct: 1 MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +E++ Y + +P+ EP +L+ L L+
Sbjct: 61 INDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L G ++ CV T S K G +C
Sbjct: 121 LMEEGLDYDILTNIFEVQILDRFGVRMNFHDCVFCHRTNLPFDFSHKYSGVLCPQHYHED 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L QT++ D LK
Sbjct: 181 ERRYGLDPNVIYLLNRFQTLNIDELK 206
>gi|289166952|ref|YP_003445219.1| hypothetical protein smi_0052 [Streptococcus mitis B6]
gi|288906517|emb|CBJ21349.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 256
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDASLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIGQAFDFSFKYGACLCPEHYHEDERR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|227510289|ref|ZP_03940338.1| recombination protein O [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227189941|gb|EEI70008.1| recombination protein O [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 256
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 2/175 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
I+L ++Y E++++++ +TR++G+ + V + + M+ + +
Sbjct: 13 HGILLYTKAYRERDLLIKFLTREFGKKMFLVHGAKRPKFRMRAAILPFTYGAYFGDLKDD 72
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + + + + YD L I L+
Sbjct: 73 GLSYINNYKRIDHFQGITADITKNAYATYIMSLIDLAFQDSIAIPKWYDQLMIGLSLIDD 132
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E+ LL G D C + S GG +C++
Sbjct: 133 GFDEEIITNIFEIQLLSAFGVEPDWVDCAICHRRDLPFDYSEAYGGLLCQNHFDK 187
>gi|227513296|ref|ZP_03943345.1| recombination protein O [Lactobacillus buchneri ATCC 11577]
gi|227083497|gb|EEI18809.1| recombination protein O [Lactobacillus buchneri ATCC 11577]
Length = 256
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 2/175 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
I+L ++Y E++++++ +TR++G+ + V + + M+ + +
Sbjct: 13 HGILLYTKAYRERDLLIKFLTREFGKKMFLVHGAKRPKFRMRAAILPFTYGAYFGDLKDD 72
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + + + + YD L I L+
Sbjct: 73 GLSYINNYKSIDHFQGITADITKNAYATYIMSLIDLAFQDSIAIPKWYDQLMIGLSLIDD 132
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E+ LL G D C + S GG +C++
Sbjct: 133 GFDEEIITNIFEIQLLSAFGVEPDWVDCAICHRRDLPFDYSEAYGGLLCQNHFDK 187
>gi|69247286|ref|ZP_00604287.1| Recombination protein O, RecO [Enterococcus faecium DO]
gi|257879931|ref|ZP_05659584.1| recombination protein O [Enterococcus faecium 1,230,933]
gi|258616602|ref|ZP_05714372.1| DNA repair protein RecO, putative [Enterococcus faecium DO]
gi|261208623|ref|ZP_05923060.1| recombination protein O [Enterococcus faecium TC 6]
gi|289566738|ref|ZP_06447152.1| DNA repair protein RecO [Enterococcus faecium D344SRF]
gi|294616319|ref|ZP_06696112.1| DNA repair protein RecO [Enterococcus faecium E1636]
gi|68194908|gb|EAN09378.1| Recombination protein O, RecO [Enterococcus faecium DO]
gi|257814159|gb|EEV42917.1| recombination protein O [Enterococcus faecium 1,230,933]
gi|260077125|gb|EEW64845.1| recombination protein O [Enterococcus faecium TC 6]
gi|289161459|gb|EFD09345.1| DNA repair protein RecO [Enterococcus faecium D344SRF]
gi|291590833|gb|EFF22549.1| DNA repair protein RecO [Enterococcus faecium E1636]
Length = 270
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKGIHRQNQPLAPALLPFTEAVYIGNFL 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRNIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICEKHWPMDEH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHAYP 191
>gi|124265845|ref|YP_001019849.1| DNA replication and repair protein RecO [Methylibium petroleiphilum
PM1]
gi|124258620|gb|ABM93614.1| DNA replication and repair protein RecO [Methylibium petroleiphilum
PM1]
Length = 274
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 8/151 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR-- 61
A +L + E ++IL++ TR++GR + + +++ +L ++V + R
Sbjct: 28 PAYLLHRYDWSESSLILDLFTREHGRVAVAAKGAKRPYSQLRAVLLPFQRLQVAYGVRRP 87
Query: 62 --LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +L + L G L + L ++P L+D L
Sbjct: 88 REGDGGEVQPLKTAEWAGGPAMLGGAALLTGFYLNELLMKLLARQDPHPALFDAYAHTLP 147
Query: 120 CH--KIPSVIGKIFVQIELMLLKNIGFGLDL 148
+ + EL+LL+ IG +L
Sbjct: 148 ALGASDDARVAAALRGFELVLLREIGLLPEL 178
>gi|161870627|ref|YP_001599800.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis 053442]
gi|161596180|gb|ABX73840.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis 053442]
Length = 264
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADSTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITR 220
>gi|15838839|ref|NP_299527.1| DNA repair protein RecO [Xylella fastidiosa 9a5c]
gi|17865569|sp|Q9PB96|RECO_XYLFA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|9107402|gb|AAF85047.1|AE004037_8 DNA repair protein RecO [Xylella fastidiosa 9a5c]
Length = 243
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 12/215 (5%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG---QSHRMQPILQAGNLVRV 56
M + + A +L VR + E ++++EV+T+ YGR R + ++ LQ +R
Sbjct: 1 MLIEHEVAFVLHVRPWRETSLLVEVLTQAYGRLGLIARGVQGLKKQTLRAALQPLQWIRF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L L R +P P ELY +
Sbjct: 61 SAIQRGELGQLRQAEALD---TAPRLKGEAMLASFYINELLLRLVPRHAPVNELYLAYSQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG----GAVC 172
+ + E +L+ +G G +L +
Sbjct: 118 TRERLRTSDSLAWSLRLFEREILETLGVGFNLECDANGTPLDPATRYVLDPLEGPRRLLS 177
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
+ Q + + L + +
Sbjct: 178 EHNNAKRRDTATGHVLLALARNQIPNTNDL-AGLR 211
>gi|269925917|ref|YP_003322540.1| DNA repair protein RecO [Thermobaculum terrenum ATCC BAA-798]
gi|269789577|gb|ACZ41718.1| DNA repair protein RecO [Thermobaculum terrenum ATCC BAA-798]
Length = 254
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 8/197 (4%)
Query: 1 MY---WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVR 55
M ++ AI+L +GE L T +G+ + + ++ L+ L +
Sbjct: 1 MQERVYKTQAIVLRRFDFGETGRQLIAFTPDFGKISLIAKGTKKPTSKLAGHLEPLTLTQ 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ S + + ++S S + +GL L R + E EP E++ +
Sbjct: 61 LVVAS-GRNIDTVTQAQTIKSFANVRSDSRVIPFGLIVAELLDRMIAEGEPNREIWALAV 119
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCR 173
L + K ++ LL G+ +L C G V + ++ S +GG VCR
Sbjct: 120 DTLERLNNTNDPWKPVTYFQVRLLILAGYQPELKVCSRCGQDVAPESVYFSLSAGGMVCR 179
Query: 174 SVGLPYAEKMLVLPSFL 190
++V P+ +
Sbjct: 180 ECSKGDPTAVVVSPNVI 196
>gi|326333985|ref|ZP_08200215.1| DNA repair protein RecO [Nocardioidaceae bacterium Broad-1]
gi|325948264|gb|EGD40374.1| DNA repair protein RecO [Nocardioidaceae bacterium Broad-1]
Length = 242
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++TR +GR + + R L+ V + +
Sbjct: 4 YRDEAIVLRTHKLGEADRIITMLTRHHGRVRAVAKGVRRTTSRWGSRLEPFTHVDLQFAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ + H L + G + R + E + Y +L L
Sbjct: 64 GRNLDTITQAETLTLFHAGIGLDYDRYTAGTAMLETADRLVHEEGEPAPQQYLLLVGGLR 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ ++ LL+++ G+ C G+ W + GGA+C +
Sbjct: 124 VLAQGDRLP--RHVLDSYLLRSLAVAGYAPSFEACARCGLEGPHRWFNVSMGGALCTTCR 181
Query: 177 LPYA 180
+P +
Sbjct: 182 VPGS 185
>gi|71733200|ref|YP_276082.1| DNA repair protein RecO [Pseudomonas syringae pv. phaseolicola
1448A]
gi|289628146|ref|ZP_06461100.1| DNA repair protein RecO [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289649888|ref|ZP_06481231.1| DNA repair protein RecO [Pseudomonas syringae pv. aesculi str.
2250]
gi|298488679|ref|ZP_07006708.1| DNA recombination and repair protein RecO [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|92087030|sp|Q48EV5|RECO_PSE14 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|71553753|gb|AAZ32964.1| DNA repair protein RecO [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298156752|gb|EFH97843.1| DNA recombination and repair protein RecO [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320325570|gb|EFW81632.1| DNA repair protein RecO [Pseudomonas syringae pv. glycinea str.
B076]
gi|320327144|gb|EFW83158.1| DNA repair protein RecO [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330871239|gb|EGH05948.1| DNA repair protein RecO [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330879242|gb|EGH13391.1| DNA repair protein RecO [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330989030|gb|EGH87133.1| DNA repair protein RecO [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 227
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|66047176|ref|YP_237017.1| DNA repair protein RecO [Pseudomonas syringae pv. syringae B728a]
gi|75500899|sp|Q4ZPE3|RECO_PSEU2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|63257883|gb|AAY38979.1| Recombination protein O, RecO [Pseudomonas syringae pv. syringae
B728a]
gi|330973034|gb|EGH73100.1| DNA repair protein RecO [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 227
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|28871357|ref|NP_793976.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213971117|ref|ZP_03399236.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato T1]
gi|301381866|ref|ZP_07230284.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato Max13]
gi|302063244|ref|ZP_07254785.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato K40]
gi|302132834|ref|ZP_07258824.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|38258467|sp|Q87XG3|RECO_PSESM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|28854608|gb|AAO57671.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213924106|gb|EEB57682.1| DNA repair protein RecO [Pseudomonas syringae pv. tomato T1]
gi|330877433|gb|EGH11582.1| DNA repair protein RecO [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330964518|gb|EGH64778.1| DNA repair protein RecO [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331015603|gb|EGH95659.1| DNA repair protein RecO [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 227
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|325915830|ref|ZP_08178129.1| DNA replication and repair protein RecO [Xanthomonas vesicatoria
ATCC 35937]
gi|325537951|gb|EGD09648.1| DNA replication and repair protein RecO [Xanthomonas vesicatoria
ATCC 35937]
Length = 240
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 7/167 (4%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRV 56
M + + +L VR++ E ++++EV+T QYGR R Q R + LQ L++
Sbjct: 1 MLIEHEHGFVLHVRAWRETSVLVEVLTEQYGRVGLLARGVQGPRKQALRAALQPLQLIQF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + A L L G L R P + ELY
Sbjct: 61 TAVQRGELAQLRQAEALD---TAPRLVGERMLAGFYISELLLRLAPRNDSVPELYACYAQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L+ +GF DL
Sbjct: 118 ARAHLASDLSLAWSLRRFERDVLEGLGFAFDLQHDSDGQPIDPAARY 164
>gi|38234284|ref|NP_940051.1| DNA repair protein RecO [Corynebacterium diphtheriae NCTC 13129]
gi|38200547|emb|CAE50242.1| Putative DNA-repair related protein [Corynebacterium diphtheriae]
Length = 242
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 4/175 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+++ A+++ +GE + I+ + TR G G + + + + LQ + V
Sbjct: 6 YRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELDVQL-Y 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + AK++ SI+ L + L+D+ L
Sbjct: 65 RGRNLESITAADTVAYFGAKIIDDVTRFSAASSILEGVEKLAVGD-EPRLFDLTVTALKN 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + L + G+ L C G + P GGAVC
Sbjct: 124 MQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGASGPHHAFHPSPGGAVCVHC 178
>gi|116510881|ref|YP_808097.1| DNA repair protein RecO [Lactococcus lactis subsp. cremoris SK11]
gi|122940431|sp|Q033E7|RECO_LACLS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116106535|gb|ABJ71675.1| DNA replication and repair protein RecO [Lactococcus lactis subsp.
cremoris SK11]
Length = 251
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y EK+ ++++ T +G+ + FV+N LQA ++
Sbjct: 5 ETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSSYASSLQAFTDGKLTATINDG 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + + + I + + + LY L L
Sbjct: 65 GFSFIEDVSEVVVYKNISADIFINAHASYIISLADAAISDNQYDPALYGFLKRSLELLDQ 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + EL +L G L+ ++C T S K G +C +
Sbjct: 125 GFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVGPFDFSYKFSGCLCPRHFDEDLRRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L Q I D LK
Sbjct: 185 HLDPNVIYLINLFQEISLDELKK 207
>gi|330889506|gb|EGH22167.1| DNA repair protein RecO [Pseudomonas syringae pv. mori str. 301020]
Length = 227
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVLHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R L +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLSAEDPHPAVFEHYAATLLALALGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|331698248|ref|YP_004334487.1| DNA repair protein recO [Pseudonocardia dioxanivorans CB1190]
gi|326952937|gb|AEA26634.1| DNA repair protein recO [Pseudonocardia dioxanivorans CB1190]
Length = 246
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D ++L V+ GE + I+ ++TR++G+ + + R + L+ N V V
Sbjct: 4 YRDTGVVLRVQKLGEADRIVTLLTRRHGKLRAVAKGVRRTRSRWGARLEPFNHVDVQ-CY 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E +++ A ++ +I+ L E L L +
Sbjct: 63 TGRSLDVVTQAETVDAFGAGIVDDYGRYTAGCAILETADRLVSEEGEPALRVYLLLVGAI 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ +T+C S GGAVC
Sbjct: 123 RAMAGRERDPSLVLDAFLLRAMSHAGWAPAITECAKCAEPGPHRAFSVAGGGAVCPRCRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
P + L D D
Sbjct: 183 PGSVLPSAETFTLLDALLHGDWD 205
>gi|86135138|ref|ZP_01053720.1| recombination protein O [Polaribacter sp. MED152]
gi|85822001|gb|EAQ43148.1| recombination protein O [Polaribacter sp. MED152]
Length = 240
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 8/232 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRVN 57
AI+L YG+ ++I++ T++ G +R + + Q +++
Sbjct: 3 IVTTKAIVLSAIKYGDTSLIVKCYTQEEGIKTYMIRGVLKPKKKGITAAYFQPLTQLKIV 62
Query: 58 WRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
L + + + + L L + E E LY+ L
Sbjct: 63 ANHNSKNTLNSLKEVQVHQPYKTVYSNIVKQSVVLFLSEVLSNAIQEEEQNTTLYEYLET 122
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + + + L L +GF DL+ G S
Sbjct: 123 ALQWLDLHDNVANFHLLFLLNLTGFLGFYPDLSDHTKNGFDLLEGVYSDNFANKNVIHKN 182
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
Y K L+ +F +E + + + Q+ + L
Sbjct: 183 DFYQFKKLLGINFDEIQEVSFSKEERQVVLQIIIQYFK---LHLGNFRNPKS 231
>gi|189347865|ref|YP_001944394.1| DNA repair protein RecO [Chlorobium limicola DSM 245]
gi|238692211|sp|B3EI06|RECO_CHLL2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189342012|gb|ACD91415.1| DNA repair protein RecO [Chlorobium limicola DSM 245]
Length = 261
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L Y +++ I + T ++G+ ++ G++ + + AGN++ +
Sbjct: 1 MIVKTRAVVLREIKYRDQSKICTLFTSEFGKLTAILKGGRNPKSRLSGKFSAGNVLDIVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIF 117
+ +++ L + I+ L + L E L L+ +L
Sbjct: 61 YKKNGRDIQLISDGSLLFSPLSAEPDMERFATMYRIIDLISQALEGEEKNLPLFSLLTGV 120
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L +F+ L ++ +GF L +CV +G
Sbjct: 121 LEILYSTEERFELLFIWFLLRMISTLGFEPSLDRCVYSG 159
>gi|227524440|ref|ZP_03954489.1| recombination protein O [Lactobacillus hilgardii ATCC 8290]
gi|227088399|gb|EEI23711.1| recombination protein O [Lactobacillus hilgardii ATCC 8290]
Length = 256
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 2/175 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
I+L ++Y E++++++ +TR++G+ + V + + M+ + +
Sbjct: 13 HGILLYTKAYRERDLLIKFLTREFGKKMFLVHGAKRPKFRMRAAILPFTYGAYFGDLKDD 72
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + + + + YD L I L+
Sbjct: 73 GLSYINNYKSIDHFQGITADITKNAYATYIMSLIDLAFQDSIAIPKWYDQLMIGLSLIDD 132
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E+ LL G D C + S GG +C++
Sbjct: 133 GFDEEIITNIFEIQLLSAFGVEPDWVDCAICHRRDLPFDYSEAYGGLLCQNHFDK 187
>gi|225867639|ref|YP_002743587.1| DNA repair protein RecO [Streptococcus equi subsp. zooepidemicus]
gi|225700915|emb|CAW97592.1| DNA repair protein RecO [Streptococcus equi subsp. zooepidemicus]
Length = 256
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 3/206 (1%)
Query: 1 MYWQ-DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M Q I+L ++Y E + ++++ T G+ + FV++ ++ P++Q +
Sbjct: 1 MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +E++ Y + +P+ EP L+ L L+
Sbjct: 61 INDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAIPDNEPDPHLFAFLKKTLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + +E+ +L G ++ CV T S K G +C
Sbjct: 121 LMEEGLDYDILTNILEIQILDRFGVRMNFHDCVFCHRTNLPFDFSHKYSGVLCPQHYHED 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ + P+ +L QTI+ D L+
Sbjct: 181 EGRYGLDPNVIYLLNRFQTINIDELR 206
>gi|251780100|ref|ZP_04823020.1| DNA repair protein RecO [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243084415|gb|EES50305.1| DNA repair protein RecO [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 249
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 19/249 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ A+I+ + + E + ++ + T + G+ + + + + L + +
Sbjct: 7 FESKAVIIKSQDFKENDKLVWLYTEELGKIAAIAKGAKKSKNKTFSITLPLCYGEYMLYK 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + S L + Y + P+ E +++ L
Sbjct: 67 GKNLYTIQEGKSINSFQGLLENLDKLTYSSYLCELIDICTPDDEKNKQIFIDLVTTFYLL 126
Query: 122 KIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC-----RSV 175
+ + EL LLKN G+ L+L C + S +
Sbjct: 127 DTNALEYELLVRAFELKLLKNTGYSLELDNCCMCKKKIISSNYISLSNYGGVCGECPKEY 186
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYF---LNK---YALQHNIIHCHLLR 229
GL ++ FL K + LTD L K Y + +N
Sbjct: 187 GLYISKATYNALKFLLKMKIDKVYR-----LNLTDKIKEELEKITSYLICNNYSKKPKS- 240
Query: 230 ENFLGKLLE 238
L + E
Sbjct: 241 LEMLKFIKE 249
>gi|188587696|ref|YP_001920269.1| DNA repair protein RecO [Clostridium botulinum E3 str. Alaska E43]
gi|188497977|gb|ACD51113.1| DNA repair protein RecO [Clostridium botulinum E3 str. Alaska E43]
Length = 249
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 19/249 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ A+I+ + + E + ++ + T + G+ + + + + L + +
Sbjct: 7 FESKAVIIKSQDFKENDKLVWLYTEELGKIAAIAKGAKKSKNKTFSITLPLCYGEYMLYK 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + S L + Y + P+ E +++ L
Sbjct: 67 GKNLYTIQEGKSINSFQGLLENLDKLTYSSYLCELIDICTPDDEKNKQIFIDLVTTFYLL 126
Query: 122 KIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + EL LLKN G+ L+L C + ++S + G VC Y
Sbjct: 127 DTNALEYELLVRAFELKLLKNTGYSLELDNCCMCKKKIISSNYISLSNYGGVCDECPKEY 186
Query: 180 ----AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYF---LNK---YALQHNIIHCHLLR 229
++ FL K + LTD L K Y + +N
Sbjct: 187 GLYISKATYNALKFLLKMKIDKVYR-----LNLTDKIKEELEKITSYLICNNYSKKPKS- 240
Query: 230 ENFLGKLLE 238
L + E
Sbjct: 241 LEMLKFIKE 249
>gi|148995010|ref|ZP_01823970.1| DNA repair protein RecO [Streptococcus pneumoniae SP9-BS68]
gi|168489499|ref|ZP_02713698.1| DNA repair protein RecO [Streptococcus pneumoniae SP195]
gi|147926892|gb|EDK77940.1| DNA repair protein RecO [Streptococcus pneumoniae SP9-BS68]
gi|183572045|gb|EDT92573.1| DNA repair protein RecO [Streptococcus pneumoniae SP195]
gi|332075692|gb|EGI86159.1| DNA repair protein RecO [Streptococcus pneumoniae GA17570]
Length = 256
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ L G L+ +CV S K G +C +
Sbjct: 125 AGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDKRR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|71274464|ref|ZP_00650752.1| Recombination protein O, RecO [Xylella fastidiosa Dixon]
gi|71901685|ref|ZP_00683761.1| Recombination protein O, RecO [Xylella fastidiosa Ann-1]
gi|170730566|ref|YP_001775999.1| DNA repair protein RecO [Xylella fastidiosa M12]
gi|238687924|sp|B0U3E0|RECO_XYLFM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|71164196|gb|EAO13910.1| Recombination protein O, RecO [Xylella fastidiosa Dixon]
gi|71728555|gb|EAO30710.1| Recombination protein O, RecO [Xylella fastidiosa Ann-1]
gi|167965359|gb|ACA12369.1| DNA repair protein RecO [Xylella fastidiosa M12]
Length = 243
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 12/215 (5%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG---QSHRMQPILQAGNLVRV 56
M + + A +L VR + E ++++EV+T+ YGR R + ++ LQ +R
Sbjct: 1 MLIEHEVAFVLHVRPWRETSLLVEVLTQAYGRLGLIARGVQGLKKQTLRAALQPLQWIRF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L L R +P P ELY +
Sbjct: 61 SAIQRGELGQLRQAEALD---TAPRLKGETMLASFYINELLLRLVPRHAPVNELYLAYSQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG----GAVC 172
+ + E +L+ +G G +L +
Sbjct: 118 TRERLRTNDSLAWSLRLFERDILETLGVGFNLECDANGTPLDPAAHYVLDPLEGPRRLLS 177
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
+ +Q + + L + +
Sbjct: 178 EHNNAERRDTATGHVLLALAHKQIPNTNDL-AGLR 211
>gi|254519864|ref|ZP_05131920.1| DNA repair protein RecO [Clostridium sp. 7_2_43FAA]
gi|226913613|gb|EEH98814.1| DNA repair protein RecO [Clostridium sp. 7_2_43FAA]
Length = 246
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 19/245 (7%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQN 65
A+++ + + E + ++ + T G+ + + + + + L + +
Sbjct: 8 AVVIKTKEFKENDKLVWLYTNNLGKITAIAKGARKSKSKLLSLTLPLCYGEYVLFKGKSL 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ S L + Y + + E E L+ + +
Sbjct: 68 FNLQEGKITNSFQGLLDNLDKLTYSSYICELIDICVEEGEVNEGLFKDFLTCMYLLNTDA 127
Query: 126 -VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV-----CRSVGLPY 179
+ EL LLK G+GL+L CV + S R G+
Sbjct: 128 LDYEMLIRSFELRLLKATGYGLNLESCVSCRKKISVSNYISLSHYGGVCEECSREHGIYI 187
Query: 180 AEKMLVLPSFLWKE------EQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
++ FL + + I+AD + ++T + + N L
Sbjct: 188 SKPAYNAIRFLMRTPMDKIYKLNINADVKRDISKVTTF-----IISSNYSKKPKS-LEML 241
Query: 234 GKLLE 238
+ E
Sbjct: 242 NYIKE 246
>gi|307710078|ref|ZP_07646522.1| DNA repair protein RecO [Streptococcus mitis SK564]
gi|307619058|gb|EFN98190.1| DNA repair protein RecO [Streptococcus mitis SK564]
Length = 256
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ ++Q L R R
Sbjct: 5 ITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLASVIQPLVLARFLLRIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + + L+ L L +
Sbjct: 65 DGLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+ +CV S K G +C
Sbjct: 125 AGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGACLCPEHYHEDERC 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|308388650|gb|ADO30970.1| DNA repair protein (recombination protein o) [Neisseria
meningitidis alpha710]
Length = 248
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITR 220
>gi|332519288|ref|ZP_08395755.1| DNA repair protein RecO [Lacinutrix algicola 5H-3-7-4]
gi|332045136|gb|EGI81329.1| DNA repair protein RecO [Lacinutrix algicola 5H-3-7-4]
Length = 239
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 8/233 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M +AI+L Y + ++I++ T+++G +R + + Q + +
Sbjct: 1 MIATTNAIVLSKLKYKDNDLIVKCYTQEFGIVSYLLRGVLKSKKKGSKVAYYQLLTQLHL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYG-LQSIVPLFRFLPEREPCLELYDMLN 115
+ A+ L + + + L ++ L L L L E E LY+ L
Sbjct: 61 VTDYKQARGLQYVKEVKINHLYSNLHTNILKSAIVLFLAEVLSTTLQEEEQNATLYNYLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + L L K++GF D+T + S C S
Sbjct: 121 TTLQWLDTNDRYSNFHLLFLLNLTKHLGFYPDITDINLPYFNLQAGEFQDMSSSKYCISG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
K L+ +F EE +++ +S + + L
Sbjct: 181 ENLTLLKTLLGTTFDALEEVKMNSKQRQSFLAIILLYFE---LHLGSFKKPKS 230
>gi|293556345|ref|ZP_06674926.1| DNA repair protein RecO [Enterococcus faecium E1039]
gi|291601412|gb|EFF31683.1| DNA repair protein RecO [Enterococcus faecium E1039]
Length = 270
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ +IL R+Y EK+ ++++ T G+ + +++ + P L R
Sbjct: 6 ESKGLILSSRNYKEKDKLVKIFTESSGKMMFYIKEIHRQNQPLAPALLPFTEAVYIGNFR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L YG + + + + + L+ L
Sbjct: 66 SEGLSFLSSVKDVHAFRNIQEDIFLSGYGTYLLNLVDAAIEDHQYDPHLFQFTQQALQRM 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ +L+ G T CVV G T+ S K GG +C
Sbjct: 126 DQGDDAEIITNIFEVQILQRFGIAPIWTHCVVCGETKGKFDYSSKYGGVICEKHWPMDEH 185
Query: 182 KMLVLP 187
+ P
Sbjct: 186 RYHADP 191
>gi|125622947|ref|YP_001031430.1| DNA repair protein RecO [Lactococcus lactis subsp. cremoris MG1363]
gi|166221896|sp|A2RHD8|RECO_LACLM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|124491755|emb|CAL96674.1| DNA repair protein recO [Lactococcus lactis subsp. cremoris MG1363]
gi|300069687|gb|ADJ59087.1| DNA repair protein RecO [Lactococcus lactis subsp. cremoris NZ9000]
Length = 251
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y EK+ ++++ T +G+ + FV+N LQA ++
Sbjct: 5 ETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDG 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + + + I + + + LY L L
Sbjct: 65 GFSFIEDVSEVVVYKNISADIFINAHASYIISLADAAISDNQYDPALYGFLKRSLELLDQ 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + EL +L G L+ ++C T S K G +C +
Sbjct: 125 GFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVGPFDFSYKFSGCLCPRHFDEDLRRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L Q I D LK
Sbjct: 185 HLDPNVIYLINLFQEISLDELKK 207
>gi|54023419|ref|YP_117661.1| DNA repair protein RecO [Nocardia farcinica IFM 10152]
gi|61214801|sp|Q5YZU4|RECO_NOCFA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|54014927|dbj|BAD56297.1| putative DNA repair protein [Nocardia farcinica IFM 10152]
Length = 256
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 7/184 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M ++D+A+++ GE + I+ ++TRQ+G + + R + L+ + + V
Sbjct: 1 MRLYRDEAVVVRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTRSRFGARLEPFSYIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE--PCLELYDMLN 115
+ +ES A ++ +I+ L E P +L+ +
Sbjct: 61 LHP-GRNLDTVTQVHTVESFAADIIDDYGRYTTACAILETAERLAGEERAPAPKLHALTA 119
Query: 116 IFLNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
L + L ++ G+ L +C +GGAVC
Sbjct: 120 SALRAIAAKQRPHELVLDAYLLRAMRFAGWAPALDECAKCATPGPHRAFHVAAGGAVCVH 179
Query: 175 VGLP 178
P
Sbjct: 180 CRPP 183
>gi|313837266|gb|EFS74980.1| DNA repair protein RecO [Propionibacterium acnes HL037PA2]
gi|314928059|gb|EFS91890.1| DNA repair protein RecO [Propionibacterium acnes HL044PA1]
gi|314972037|gb|EFT16135.1| DNA repair protein RecO [Propionibacterium acnes HL037PA3]
gi|328907183|gb|EGG26949.1| DNA repair protein RecO [Propionibacterium sp. P08]
Length = 246
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G+ R + S + L NLV +
Sbjct: 4 YRDQAVVLRTHKLGEADRIVSMLSREHGKIRAVARGVRRTSSKFGARLDPFNLVDLQLVQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + +LF + +P Y +L L
Sbjct: 64 GRNLDVISQVECLHPYSAPLRQDYALFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 123
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
P + L L G+ DL CV SP GG VC +
Sbjct: 124 VLGQGTTDGPRPPEMVLDSYLLRSLSAAGYAPDLVDCVQCRTPGPHPGFSPSLGGVVCIN 183
Query: 175 VGLP 178
P
Sbjct: 184 CQPP 187
>gi|148380896|ref|YP_001255437.1| DNA repair protein RecO [Clostridium botulinum A str. ATCC 3502]
gi|148290380|emb|CAL84507.1| DNA repair protein [Clostridium botulinum A str. ATCC 3502]
Length = 247
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 71/252 (28%), Gaps = 25/252 (9%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ A+++ + + E + ++ + T + G+ + + +R + + + +
Sbjct: 4 YKTRAVVIKTQEFKEADKLVWLYTEKLGKITAIAKGAKKNRSKYLSNTSPFCYGEYVLYK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++++S L YG + E+E EL+ L L
Sbjct: 64 GKSLFNLSEVQLIDSFQDFLRDLDTLTYGSYFCELIDICTEEKESSRELFQELVKSLFLM 123
Query: 122 KIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K I + E+ +LK G+ L+ CV G + +
Sbjct: 124 KNKVVDIEILARAFEMKVLKYTGYALNFNHCVECGRKIETSNYISLQSLGGICNYCNKIN 183
Query: 181 EKMLVLPSFLWKEE--------------QTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
+ ++ + T + + N +
Sbjct: 184 GIGVTYATYNILKYIYAAPLEKLYRLSVDTETKKDIYKIL--------NTIINQNYLKKP 235
Query: 227 LLRENFLGKLLE 238
L + E
Sbjct: 236 KS-LQILNYIKE 246
>gi|261391960|emb|CAX49424.1| DNA repair protein RecO (recombination protein O) [Neisseria
meningitidis 8013]
Length = 247
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
GL + + +P ELYD L + +
Sbjct: 72 TLH---RAEWIGGWPQPQGRALFSGLYVNELMLKLTVREDPLPELYDALAEVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITR 219
>gi|296136814|ref|YP_003644056.1| DNA repair protein RecO [Thiomonas intermedia K12]
gi|294340983|emb|CAZ89378.1| putative DNA repair protein recO (Recombination protein O)
[Thiomonas sp. 3As]
gi|295796936|gb|ADG31726.1| DNA repair protein RecO [Thiomonas intermedia K12]
Length = 266
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 66/237 (27%), Gaps = 16/237 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E +++L+V +R++GR + + + +L +W R
Sbjct: 34 YVLHSYPWKETSLLLDVFSRRHGRLALVAKGAKRPTSALRAVLLGFQPCHASWSGRGEVR 93
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ LS L G L R L + L+D + +
Sbjct: 94 T---LTRAEWAGGLAPLSGLPLLCGFYFNELLVRLLAREDAHEGLFDAYHAGIAALAQRP 150
Query: 126 VI-----GKIFVQIELMLLKNIGFGLDLT-KCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ E LL+ +GF DL + + + V
Sbjct: 151 HATAGELEPVLRSFEFSLLRELGFLPDLHLEGATSEPVLPDAFYRVDPDHGVSACSASDA 210
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQ-HNIIHCHLLRENFLGK 235
+ L + +L A + L + L H R+ +
Sbjct: 211 LAVRGEVLLALREGPPAEGDVALARAAKT----LMRSLLHYHLSGQMLRTRQLLIDL 263
>gi|256396146|ref|YP_003117710.1| DNA repair protein RecO [Catenulispora acidiphila DSM 44928]
gi|256362372|gb|ACU75869.1| DNA repair protein RecO [Catenulispora acidiphila DSM 44928]
Length = 243
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 5/178 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSR 61
+D+ ++L R+ GE + I+ +TR GR + + S + L+ V V +
Sbjct: 5 RDEGVVLRTRNLGEADRIITFLTRDRGRVRAVAKGVRRTSSKFGSRLEPFTFVDVQIFEK 64
Query: 62 LAQNLGEFRFEVLESHCA--KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++L + + + G + R + P ++ Y +L L
Sbjct: 65 HGRDLHLVTQAETLAAYGGTLVSDYPAYTAGQAMLETAERLSEDDVPAVQQYLLLVGGLR 124
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ L L G+ C G + + +GGAVC
Sbjct: 125 TLASGEHSAGLVLDAFLLRSLAIAGYAPSFEDCARCGDPGAHRFFNLPAGGAVCSDCK 182
>gi|261378403|ref|ZP_05982976.1| DNA repair protein RecO [Neisseria cinerea ATCC 14685]
gi|296315083|ref|ZP_06865024.1| DNA repair protein RecO [Neisseria polysaccharea ATCC 43768]
gi|269145175|gb|EEZ71593.1| DNA repair protein RecO [Neisseria cinerea ATCC 14685]
gi|296837987|gb|EFH21925.1| DNA repair protein RecO [Neisseria polysaccharea ATCC 43768]
Length = 246
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 10/210 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V V+W
Sbjct: 12 FMLASSPWRESSLWVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFGGLYVNELVLKLTAREDPMPELYDALAEVMKAVCCEA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA---VCRSVGLPYAEK 182
+ E LL +G DL Q + A V R LP
Sbjct: 129 DHVADLRRFEWKLLTALGVAPDLHTDGEGREIQSSARYCIRPEEAVMPVGRECVLPSETV 188
Query: 183 MLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
++ L A SL+ A ++T
Sbjct: 189 IIADGQSLIDLQTGSFGSAQSLQDALKITR 218
>gi|283769576|ref|ZP_06342472.1| DNA repair protein RecO [Bulleidia extructa W1219]
gi|283103844|gb|EFC05230.1| DNA repair protein RecO [Bulleidia extructa W1219]
Length = 244
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 5/192 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M Q +L Y EK +I+ ++T++ G+ + + + + LQ V V +
Sbjct: 1 MNDQTVGFVLKEVPYQEKAVIVSLLTKE-GKISFIAKGIRNINSKNAAALQLFTKVEVEY 59
Query: 59 RSR-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R + R + L + + + + R + E LY ++
Sbjct: 60 DHREGKELQVLKRAKPLCFYRHVYSDLQISSMASVLVDIVDRLVVLNEDTSNLYILIEKS 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + IFV LL+ GF ++ CV G + ++ S K GG +C
Sbjct: 120 FDLWESNEKANMIFVLSLSTLLQEFGFEPNMDACVHCGKQE-VVSFSSKEGGFLCADHAQ 178
Query: 178 PYAEKMLVLPSF 189
M+ +
Sbjct: 179 ELRNPMMKVNQL 190
>gi|134098078|ref|YP_001103739.1| DNA repair protein RecO [Saccharopolyspora erythraea NRRL 2338]
gi|291007463|ref|ZP_06565436.1| DNA repair protein RecO [Saccharopolyspora erythraea NRRL 2338]
gi|166221909|sp|A4F9T9|RECO_SACEN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|133910701|emb|CAM00814.1| DNA repair protein RecO [Saccharopolyspora erythraea NRRL 2338]
Length = 273
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D A++L V+ GE + I+ ++TR+YG+ + + R ++ + V +
Sbjct: 4 YRDSAVVLRVQKLGEADRIITLLTRRYGKVRAVAKGVRRTTSRFGARVEPFCHIDVQLYT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + + L++ A ++ +++ L E L L
Sbjct: 64 GRTLDV-ITQVQTLDAFGAHIVDDYQRYTSACAVLETVDRLAAEEGEPVLRLYLLATGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+ + G+ L +C + +GGAVC
Sbjct: 123 RALAGRERDSSLVLDAFLLRAMSFAGWAPALDECARCNARGPHAAFNVAAGGAVCAEC 180
>gi|322391156|ref|ZP_08064628.1| recombination protein O [Streptococcus peroris ATCC 700780]
gi|321145909|gb|EFX41298.1| recombination protein O [Streptococcus peroris ATCC 700780]
Length = 256
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 2/202 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++L R++ E + ++++ T Q G+ + FV++ ++ P++Q L R +
Sbjct: 5 ITSRGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQTKLAPVIQPLVLARFLMKVND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + Y L + L+ L L +
Sbjct: 65 DGLSYIEDYREVMTFPKINSDLFVMAYATYVAALADASLQDNHEDAPLFAFLQKVLELME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ LL G L+ +C S K GG +C ++
Sbjct: 125 EGLDYQVLTNIFEIQLLTRFGISLNFNECTFCHRVGQAFDFSFKYGGCLCPDHYHEDEKR 184
Query: 183 MLVLP--SFLWKEEQTIDADSL 202
+ P +L + Q ID ++L
Sbjct: 185 CHLNPNIPYLLNQFQAIDFETL 206
>gi|222152223|ref|YP_002561398.1| DNA repair protein RecO [Streptococcus uberis 0140J]
gi|222113034|emb|CAR40355.1| DNA repair protein RecO [Streptococcus uberis 0140J]
Length = 257
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 2/200 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L R+Y E + ++++ T G+ + FV+N ++ ++Q + +
Sbjct: 8 GLVLYNRNYREDDKLVKIFTETSGKRMFFVKNVGKSKLASVIQPLTIADFMMKLNEKGLS 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ ++++ Y + + + E L+ L L+ +
Sbjct: 68 YIEDYNSVQNYPKINQDLFKLSYASYLLALADAAISDNESDPHLFVFLKKTLDLMEEGLD 127
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ E+ +L G L+ +CV T S K G +C + +
Sbjct: 128 YEVLTNIFEIQVLDRFGLHLNFNECVFCHRTGLPFDFSHKYSGLLCPQHFHEDLHRSHLD 187
Query: 187 PS--FLWKEEQTIDADSLKS 204
P+ +L + Q+I L S
Sbjct: 188 PNVIYLLNQFQSIHFSDLNS 207
>gi|255323740|ref|ZP_05364868.1| DNA repair protein RecO [Corynebacterium tuberculostearicum SK141]
gi|255299230|gb|EET78519.1| DNA repair protein RecO [Corynebacterium tuberculostearicum SK141]
Length = 238
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/199 (11%), Positives = 49/199 (24%), Gaps = 6/199 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ +GE + ++ ++TR +G + + + + LQ + V
Sbjct: 4 NYRDRAVVIRTYDFGEADRVIVLLTRDHGLVRAVAKGVRRAKSRFGSRLQLFVNLDVQLY 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
V + + + R
Sbjct: 64 VGKNLATISQADTVDYFGARLIEDYERYTAACAVLESAERLAFADAAHDPYLYESVTATL 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV---- 175
+ L + + G+ L C P +GGA C
Sbjct: 124 EQLQTADPTMALDAFLLQAMAHAGWAPSLFNCAQCNRPGPHHAFHPAAGGAACHECRPPG 183
Query: 176 GLPYAEKMLVLPSFLWKEE 194
+ L L
Sbjct: 184 AAEVDPETLHHLWLLAHNH 202
>gi|281490531|ref|YP_003352511.1| DNA repair protein RecO [Lactococcus lactis subsp. lactis KF147]
gi|281374349|gb|ADA63882.1| DNA repair protein RecO [Lactococcus lactis subsp. lactis KF147]
Length = 251
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y EK+ ++++ T +G+ + FV+N LQA ++
Sbjct: 5 ETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDG 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + + + I + + + LY L L
Sbjct: 65 GFSFIEDVSEVVVYKNISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQ 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + EL +L G L+ ++C T S K G +C +
Sbjct: 125 GFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVGPFDFSYKFSGCLCPQHFDEDLRRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L Q I D LK
Sbjct: 185 HLDPNVIYLVNLFQEISLDELKK 207
>gi|227504557|ref|ZP_03934606.1| DNA repair protein RecO [Corynebacterium striatum ATCC 6940]
gi|227198877|gb|EEI78925.1| DNA repair protein RecO [Corynebacterium striatum ATCC 6940]
Length = 239
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/223 (13%), Positives = 59/223 (26%), Gaps = 7/223 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ +GE + ++ ++TR +G G + + + + LQ + V
Sbjct: 5 NFRDRALVIRSYDFGEADRVIVLLTRNHGLVRGVAKGVRRAKSRFGSRLQLFVNLDVQLY 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
V + + ++ R +
Sbjct: 65 PGRNLYTISQADTVDYFGANIIEDYERYTAACAALESAERLAFTDADSDPYLYTALVHTL 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV---- 175
+ L + + G+ L C P GGA C
Sbjct: 125 QVMQYDDPLQALDAFLLQAMAHAGWAPSLFDCAQCQKPGPHHAFHPAVGGAACHECRPPG 184
Query: 176 GLPYAEKMLVLPSFLWKE-EQTIDADSLKSAFQLTDYFLNKYA 217
+ L L + + A QLT L +
Sbjct: 185 AAEVDPETLHHMWLLAHGCPSNPTHEQRQEAHQLTRAHLQWHL 227
>gi|15672040|ref|NP_266214.1| DNA repair protein RecO [Lactococcus lactis subsp. lactis Il1403]
gi|13878683|sp|Q9CJD9|RECO_LACLA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|12722899|gb|AAK04156.1|AE006244_5 hypothetical protein L1006 [Lactococcus lactis subsp. lactis
Il1403]
gi|326405649|gb|ADZ62720.1| DNA repair protein RecO [Lactococcus lactis subsp. lactis CV56]
Length = 251
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R+Y EK+ ++++ T +G+ + FV+N LQA ++
Sbjct: 5 ETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDG 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + + + I + + + LY L L
Sbjct: 65 GFSFIEDVSEVVVYKNISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQ 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + EL +L G L+ ++C T S K G +C +
Sbjct: 125 GFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVGPFDFSYKFSGCLCPQHFDEDLRRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L Q I D LK
Sbjct: 185 HLDPNVIYLVNLFQEISLDELKK 207
>gi|77359685|ref|YP_339260.1| DNA repair protein recO (recombination protein O)
[Pseudoalteromonas haloplanktis TAC125]
gi|123587133|sp|Q3IDL0|RECO_PSEHT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|76874596|emb|CAI85817.1| DNA repair protein recO (Recombination protein O)
[Pseudoalteromonas haloplanktis TAC125]
Length = 230
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 13/230 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L R Y + ++L+++ G+ R Q+ + + LQ + V++ +
Sbjct: 7 RAYLLHRRPYSDSQVMLDMLVEGVGQLRMLARISGRQATKHKAQLQPFQALLVHYNGKYD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L G R +P EP +++ + N L
Sbjct: 67 LK---YINKFELHGTPLFLKGDELYCGFYLNELTNRIVPINEPIDQVFQLYNTHLKNLNS 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + + E LL+ +G+G+D + + S V V
Sbjct: 124 GANLQAVLRSYEFQLLELLGYGVDFSFDASGEPIDEKRTYS--YFAEVGFLVQDDPRSGF 181
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L AD L A Q L++Y L+ + + RE F
Sbjct: 182 SGLQLNAIANHDFSQADVLYMAKQ-----LSRYLLKPLLGNKPLKSRELF 226
>gi|254468532|ref|ZP_05081938.1| DNA repair protein RecO [beta proteobacterium KB13]
gi|207087342|gb|EDZ64625.1| DNA repair protein RecO [beta proteobacterium KB13]
Length = 234
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 5/208 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
IL + E ++I+E ++ +GR + + R + LQ +++ W +
Sbjct: 10 YILHTYPFKETSLIVEALSENFGRISLLAKGARRPRSLLRGYLQPFQMIQATWSNVSDLK 69
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V + L + + G + + LP+ E ++ + L +
Sbjct: 70 TLY---NVEWNSKYLGLKNQALICGFYMNELIMKLLPKDESSNVFFNFYHQQLEELSLNV 126
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ EL LL+ +G+ ++L + + ++ K++
Sbjct: 127 GYESLLRLFELKLLEELGYKVNLDEDENGNPINPKKFYYYEAEYGASLPDVSTNGVKIIG 186
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFL 213
++LK + L Y +
Sbjct: 187 QTLIDMHNNDYSHLNTLKQSKLLMRYLM 214
>gi|159039357|ref|YP_001538610.1| DNA repair protein RecO [Salinispora arenicola CNS-205]
gi|157918192|gb|ABV99619.1| DNA repair protein RecO [Salinispora arenicola CNS-205]
Length = 300
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 10/183 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L V+ GE + I+ ++TR +GR R + + L+ V +
Sbjct: 31 YRDDAVVLRVQKLGESDRIITLLTRGHGRLRAVARGVRRTTSKFGARLEPFGHVDLQLAG 90
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
N G + E ++ + + L ++ L E L
Sbjct: 91 DPKGNQGSSLHTISQVEGIDLYGKRFLGDYPRYTAASAVCETAERLTPVEREPSLRLFQL 150
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + ++ LL+ + G+ L C V G S +GGAVC
Sbjct: 151 TLGALRALAGGEHAATLVLDAYLLRGMALAGWAPALAGCAVCGTPGRHRAFSVPAGGAVC 210
Query: 173 RSV 175
Sbjct: 211 LDC 213
>gi|32473195|ref|NP_866189.1| DNA repair protein recO [Rhodopirellula baltica SH 1]
gi|32397874|emb|CAD73875.1| probable DNA repair protein recO [Rhodopirellula baltica SH 1]
Length = 276
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
AI+L + E ++I+ ++T+ GR + + + + L ++ + +
Sbjct: 5 STMAIVLRTVDFSETSLIVTLLTKDLGRISALAKGARRLKGPFEGSLDLLSVCAITLIDK 64
Query: 62 LAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L L S G L + + +P EL+DM +
Sbjct: 65 PGDTLDLLTESKLRRRFRGAQRSLERLHAGYYIAEMLRLLVDDDDPHRELFDMTLSAMGM 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ K + + L+ +G +C V G
Sbjct: 125 IDGEGHVAKTLLAFDAQCLRLLGHSPATQRCTVCG 159
>gi|23011689|ref|ZP_00051976.1| COG1381: Recombinational DNA repair protein (RecF pathway)
[Magnetospirillum magnetotacticum MS-1]
Length = 117
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 131 FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFL 190
V+ EL LL +GFGLDL+ C TG L++VSPKSG AV S G PY +++L LP FL
Sbjct: 1 MVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPYRDRLLPLPPFL 60
Query: 191 WKEEQT------IDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
+Q D +++ F LT YFL+++ + R F+
Sbjct: 61 RDRDQPGSGWQTPDEHAVREGFTLTGYFLDQHVWRPRAQVMPEERARFV 109
>gi|329116597|ref|ZP_08245314.1| DNA repair protein RecO [Streptococcus parauberis NCFD 2020]
gi|326907002|gb|EGE53916.1| DNA repair protein RecO [Streptococcus parauberis NCFD 2020]
Length = 257
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 72/202 (35%), Gaps = 2/202 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
Q I+L +++ E + ++++ T Q G+ + FV++ ++ ++Q +
Sbjct: 5 QSHGIVLYNKNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLSSVIQPLTAADFILKLNDI 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ +E++ Y L + E +L+ L L+ +
Sbjct: 65 GLSYIEDYNQVETYKKINQDIFTLSYATYITALTDAALKDNEIDAQLFAFLKKTLDLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ CV T S K G +C +
Sbjct: 125 GLDYEVMANIFEVQILDRFGVRLNFHDCVFCHRTGLPFDFSHKYSGVLCPQHYHEDIHRN 184
Query: 184 LVLPS--FLWKEEQTIDADSLK 203
+ P+ +L + Q I D LK
Sbjct: 185 HLDPNVVYLLDQFQAIHFDELK 206
>gi|303239951|ref|ZP_07326473.1| DNA repair protein RecO [Acetivibrio cellulolyticus CD2]
gi|302592430|gb|EFL62156.1| DNA repair protein RecO [Acetivibrio cellulolyticus CD2]
Length = 248
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 60/208 (28%), Gaps = 2/208 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
+ +IL + GE + I+ + ++ G+ G + + + + + +
Sbjct: 4 IKTKGVILKEINVGEADKIVTIFSKNKGKISGSAKGARRPKSSLVAGTQLFCYSEFVLFK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+V+E Y + + E +P + + L
Sbjct: 64 GKDMYSLNSCDVIEPFYEIRNDLVKLTYAAHINEIITDIVQEEQPSARVLQLFLNSLYML 123
Query: 122 -KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K +I E+ LL +G+ + C+ G + +
Sbjct: 124 SKTEKAPEQIARVFEIRLLSILGYAPSVRGCIKCGSEDFTDFSFSFRKCGFLCKQCIEDD 183
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQL 208
L L + I ++KS F
Sbjct: 184 RYALSLSEGAARAIHYIVHSNIKSVFNF 211
>gi|218515340|ref|ZP_03512180.1| DNA repair protein RecO [Rhizobium etli 8C-3]
Length = 84
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M WQD AIILG++ +GE ++I EVMTR GRHLG VR+G+S MQP+LQ GN V V WR+
Sbjct: 1 MQWQDHAIILGIKRHGETSVIAEVMTRDRGRHLGLVRSGRSRAMQPVLQPGNAVEVIWRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLS 83
RL ++LGEFR E + A+L+
Sbjct: 61 RLDEHLGEFRVEPVTLRAARLME 83
>gi|77918211|ref|YP_356026.1| RecO-domain-containing DNA repair protein [Pelobacter carbinolicus
DSM 2380]
gi|90103523|sp|Q3A8N7|RECO_PELCD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|77544294|gb|ABA87856.1| DNA replication and repair protein RecO [Pelobacter carbinolicus
DSM 2380]
Length = 258
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 77/210 (36%), Gaps = 5/210 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
DA++L YGE + I+ + + + G G R + R + L+ + V + W+SR
Sbjct: 5 SSDAVVLHHFDYGEADRIVTLFSLEKGLIKGIARQARKSRKRFGAALEPFSTVHMRWQSR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
++L + L + L + L + L L +YD+L FL
Sbjct: 65 SGRDLVTLQDAELIDLRSGLRHNLLAMALAAYGCELVENLVGETGAQPPVYDLLTAFLTH 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSVGLP 178
+ + +EL LL G+ L C G T + + + GG++C
Sbjct: 125 VNHHGGSEEARLLLELRLLCLSGYAPHLVHCCKCGASFTSETVAFAASLGGSLCLDCVTG 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
+ L L S +L F+
Sbjct: 185 VDVQYLSLLSLGSLARALKAPLALFEGFRF 214
>gi|251781487|ref|YP_002995788.1| DNA repair protein RecO [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390115|dbj|BAH80574.1| DNA repair protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|323126280|gb|ADX23577.1| DNA repair protein RecO [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 254
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 72/199 (36%), Gaps = 2/199 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
I+L R+Y E + ++++ T G+ + FV++ ++ ++Q ++ +
Sbjct: 8 GIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLS 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ ++++ Y + + + EP L+ L L+ +
Sbjct: 68 YIDDYNHVDTYQQINQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLD 127
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ E+ +L+ G ++ CV S G +C + +
Sbjct: 128 YEVLTNIFEIQVLERFGIRINFHDCVFCHRVGLPFDFSHHYSGVLCPEHYHKDDYRNHLD 187
Query: 187 PS--FLWKEEQTIDADSLK 203
P+ +L QTI D L+
Sbjct: 188 PNVIYLLDRFQTIQFDELR 206
>gi|330937655|gb|EGH41560.1| DNA repair protein RecO [Pseudomonas syringae pv. pisi str. 1704B]
Length = 199
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A + R+Y E + +++ +T GR +R+ + + + + + V +R R
Sbjct: 8 PAYVSHSRAYRENSALVDFLTP-QGRLRAVLRSAKG-KAGSLARPFVPLEVEFRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A ++ G+ L R LP +P +++ L +
Sbjct: 66 N---VGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALSLGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL ++G+G + +
Sbjct: 123 PLEPLLRSFEWRLLDDLGYGFAMDADINGE 152
>gi|28199178|ref|NP_779492.1| DNA repair protein RecO [Xylella fastidiosa Temecula1]
gi|182681909|ref|YP_001830069.1| DNA repair protein RecO [Xylella fastidiosa M23]
gi|32129944|sp|Q87C04|RECO_XYLFT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238691045|sp|B2I606|RECO_XYLF2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|28057284|gb|AAO29141.1| DNA repair protein RecO [Xylella fastidiosa Temecula1]
gi|182632019|gb|ACB92795.1| DNA repair protein RecO [Xylella fastidiosa M23]
gi|307578164|gb|ADN62133.1| DNA repair protein RecO [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 243
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 12/215 (5%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG---QSHRMQPILQAGNLVRV 56
M + + A +L VR + E ++++EV+T+ YGR R + ++ LQ +R
Sbjct: 1 MLIEHEVAFVLHVRPWRETSLLVEVLTQAYGRLGLIARGVQGLKKQTLRAALQPLQWIRF 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + A L L L R +P P ELY +
Sbjct: 61 SAIQRGELGQLRQAEALD---TAPRLKGETMLASFYINELLLRLVPRHAPVNELYLAYSQ 117
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA----VC 172
+ + EL +L+ +G G +L +
Sbjct: 118 TRERLRTNDSLAWSLRLFELDILETLGVGFNLECDANGTPLDPAARYVLDPLEGPRLLLS 177
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
+ +Q + + L + +
Sbjct: 178 EHNNAERRDTATGHVLLALAHKQIPNTNDL-AGLR 211
>gi|227833627|ref|YP_002835334.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975]
gi|262184630|ref|ZP_06044051.1| DNA repair protein RecO [Corynebacterium aurimucosum ATCC 700975]
gi|227454643|gb|ACP33396.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975]
Length = 238
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 4/180 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ +GE + I+ ++TR +G G + + + + LQ + V
Sbjct: 4 NFRDRALVIRTYDFGEADRIIVLLTRHHGLVRGVAKGVRRAKSRFGSRLQLFVNLDVQLY 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFL 118
V + + ++ R P LY+ L
Sbjct: 64 PGRNLYTISQADTVDYFGARIIEDYERYTSACAALESAERLAAADAPGDPYLYEACVDVL 123
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + L + + G+ L C P GGA C P
Sbjct: 124 DKL-QHGDPLMLLDAFLLKAMSHAGWAPSLFDCAQCQRPGPHHAFHPAVGGAACHQCRPP 182
>gi|89889972|ref|ZP_01201483.1| putative DNA repair protein, RecO [Flavobacteria bacterium BBFL7]
gi|89518245|gb|EAS20901.1| putative DNA repair protein, RecO [Flavobacteria bacterium BBFL7]
Length = 240
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 5/222 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M + AI+L YGE ++I + T++ G ++ + R Q + +
Sbjct: 1 MLTRTPAIVLSTIKYGEADLIARLYTKELGTQSYMLKGVRKSRKGKLRVSYFQPLVQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLN 115
+ +L + + + + + + + L +P ELY+ L+
Sbjct: 61 VTHHKGKGSLEYIKEAQVTPAYDTIHTDIVKSSVVMFFSEILTQLLTEQQPDSELYEYLS 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++ + L +GF DL + ++
Sbjct: 121 SIFQFLDQIDAVANFSIKTLIDLTSYMGFQPDLETVDLPYFNLLDGTFDTNGLLPHHATI 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
K + +F + ++ + S L + +
Sbjct: 181 EESVLIKQFLGTNFAAIHQIKMNREERNSLLNLVIDYFQIHL 222
>gi|51891706|ref|YP_074397.1| DNA repair and genetic recombination protein [Symbiobacterium
thermophilum IAM 14863]
gi|61214898|sp|Q67RZ0|RECO_SYMTH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|51855395|dbj|BAD39553.1| DNA repair and genetic recombination protein [Symbiobacterium
thermophilum IAM 14863]
Length = 253
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 2/153 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
D I++ VR++ + + I+ ++TR+ G+ R + R + V + ++
Sbjct: 7 DGIVIRVRNFQDADKIVVLLTREEGKVEAVARGARRPRNRFAAATQLFSHVRAQLFSGRS 66
Query: 66 -LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ E++ES Y + + LPER+ Y +L L+ +
Sbjct: 67 LDTLSQVEIVESFRQLREDLVRMAYATYACELVDALLPERQRQEAPYLLLLTSLHLWGEP 126
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ EL LL +GF L CV G
Sbjct: 127 DRDPEPLLRAFELKLLSMLGFRPSLAACVGCGS 159
>gi|92113757|ref|YP_573685.1| DNA repair protein RecO [Chromohalobacter salexigens DSM 3043]
gi|91796847|gb|ABE58986.1| DNA repair protein RecO [Chromohalobacter salexigens DSM 3043]
Length = 234
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 5/146 (3%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRL 62
+ A +L R+Y E + I+E++T GR + Q + + ILQ + + V W
Sbjct: 4 EPAFLLHKRAYRETSAIVELLTLGQGRVRAVAQGVQRGGSKARGILQPFSPLHVTWSGNG 63
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
A LL+ L G+ + L R LP P E++ + + L
Sbjct: 64 DLKRLRLLESQ---GSAALLAGEGLLCGVYANELLARTLPLEYPAGEVFSLYALTLEALP 120
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDL 148
P+ ++E+ LL+ +
Sbjct: 121 SPAKRAGALRRLEITLLETLDAAPRF 146
>gi|317125251|ref|YP_004099363.1| DNA replication and repair protein RecO [Intrasporangium calvum DSM
43043]
gi|315589339|gb|ADU48636.1| DNA replication and repair protein RecO [Intrasporangium calvum DSM
43043]
Length = 242
Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 11/226 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++TR GR + + + + L+ G +V V
Sbjct: 4 YRDEAIVLRTHKLGEADRIITMLTRTRGRVRAVAKGVRRTKSRFGSRLEPGMVVDVQCYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + + + E EP + Y +L L
Sbjct: 64 GRNLDTVTQVETLASYGDVIARDYAAWTAASAMLETSIQLTEEHEPQAQQYLLLAGALRA 123
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L L G+ C G + ++GGAVC P
Sbjct: 124 LSERVHDPSLVLDAFLLRSLAVAGWAPSFHDCARCGAEGPQRAFNVQAGGAVCPLCRPPG 183
Query: 180 AEKMLVLPSFLW--------KEEQTIDADSLKSAFQLTDYFLNKYA 217
+ L D + L FL +
Sbjct: 184 SSAPAPETFALLAALLSGDWDVADASDDRQRRQGSGLVAAFLQWHL 229
>gi|296130029|ref|YP_003637279.1| DNA repair protein RecO [Cellulomonas flavigena DSM 20109]
gi|296021844|gb|ADG75080.1| DNA repair protein RecO [Cellulomonas flavigena DSM 20109]
Length = 243
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 9/207 (4%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
M ++D+AI+L GE + I+ ++TR++G+ + + R L+ V V
Sbjct: 1 MNLYRDEAIVLRTHKLGEADRIVTLLTREHGKVRAVGKGVRRTTSRFGSRLEPFMHVDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNI 116
+ ++ + +L+ G + R + + Y +L
Sbjct: 61 LSTGRNLDVVTQVETLGPYGRHISEDYALYTVGTAMLETAERLVEAEREPAVQQYRLLVG 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
+ + + ++ LL+ + G+ T C G +P GGAVC
Sbjct: 121 AVRALATRAHAPGLV--LDSYLLRALAVAGWAPSFTDCARCGEPGPHHAFAPAVGGAVCL 178
Query: 174 SVGLPYAEKMLVLPSFLWKEEQTIDAD 200
+ P A L + D +
Sbjct: 179 TCRPPGAAAPAPETFALLAALLSGDWE 205
>gi|121605950|ref|YP_983279.1| DNA repair protein RecO [Polaromonas naphthalenivorans CJ2]
gi|166221904|sp|A1VRT0|RECO_POLNA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|120594919|gb|ABM38358.1| DNA repair protein RecO [Polaromonas naphthalenivorans CJ2]
Length = 249
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 7/150 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ A +L + E ++IL+V TR +GR R + +PIL + V +
Sbjct: 8 NEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPSSSFRPILLPLQPLHVAF--- 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ S L G L R L +P L+D +
Sbjct: 65 GGDAEIRNLKSAEWQGGHVMPSGDALLSGYYLNELLMRLLARDDPHPLLFDAYAATVQLL 124
Query: 122 KIPSVI--GKIFVQIELMLLKNIGFGLDLT 149
+ EL LL+ IG L
Sbjct: 125 ASQNPDTLQLALRAFELRLLQGIGLLPRLD 154
>gi|332284934|ref|YP_004416845.1| DNA repair protein RecO [Pusillimonas sp. T7-7]
gi|330428887|gb|AEC20221.1| DNA repair protein RecO [Pusillimonas sp. T7-7]
Length = 194
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
+L + E ++I++ TR +G + + +P+L A + ++W
Sbjct: 13 GYLLHSAPWRETSLIVQAFTRHHGVVALVAKGAKRPYSVLRPVLSAFQPLALSWSGANEV 72
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
ES + L ++ L R LP +P LY+ ++ L +
Sbjct: 73 KT----LTRAESMGIRKLGGQAYMSAWYMNELLLRLLPREDPHPVLYEAYDVALQRLALQ 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLD 147
+ E +LL G+G++
Sbjct: 129 RSAASALRRFEWILLNETGYGIE 151
>gi|322410830|gb|EFY01738.1| DNA repair protein RecO [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 254
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 72/199 (36%), Gaps = 2/199 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
I+L R+Y E + ++++ T G+ + FV++ ++ ++Q ++ +
Sbjct: 8 GIVLFNRNYREDDKLVKIFTEAAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLS 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ ++++ Y + + + EP L+ L L+ +
Sbjct: 68 YIDDYNHVDTYQQINQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLD 127
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ E+ +L+ G ++ CV S G +C + +
Sbjct: 128 YEVLTNIFEIQVLERFGIRINFHDCVFCHRVGLPFDFSHHYSGVLCPEHYHKDDYRNHLD 187
Query: 187 PS--FLWKEEQTIDADSLK 203
P+ +L QTI D L+
Sbjct: 188 PNVIYLLDRFQTIQFDELR 206
>gi|325107899|ref|YP_004268967.1| DNA repair protein recO [Planctomyces brasiliensis DSM 5305]
gi|324968167|gb|ADY58945.1| DNA repair protein recO [Planctomyces brasiliensis DSM 5305]
Length = 249
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 3/159 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ + I++ + E + ++ TR +G+ + + + + + ++ + +
Sbjct: 6 KTEGIVIRQADFSESSRVVTFFTRDFGKISALAKGAKRLKGPFEAAIDLLTRCQIVFLHK 65
Query: 62 LAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
L L + ++ GL L + +P YD L+
Sbjct: 66 STDRLDLLTEAKLVQRFGPDVRDVNVHYAGLYVAELLNSCSEQFDPAPAWYDAAVATLDR 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
++ ++ EL L+ +G + C +D
Sbjct: 126 LRMTGDYRLELLRFELFTLQVLGLLPEFENCRCGRPVED 164
>gi|320548079|ref|ZP_08042359.1| recombination protein O [Streptococcus equinus ATCC 9812]
gi|320447321|gb|EFW88084.1| recombination protein O [Streptococcus equinus ATCC 9812]
Length = 251
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 3/206 (1%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ ++L R+Y E + ++++ T G+H+ FVR+ R ++Q + + +
Sbjct: 1 MQTKETYGLVLYNRNYREDDKLVKIFTETDGKHMFFVRHAGKSRFNSVIQPLTIAKFIVK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ + S Y +P+ +L+ LN L+
Sbjct: 61 INDNGLSFIEDYKEVASFKEINADLFKLSYASYVTSLADAAVPDNVADSQLFAFLNKTLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + E+ +L+ G L+L +C S K G +C
Sbjct: 121 LMEEGLDYEILTNIFEIQILERFGISLNLHECAFCHRVGLPFDFSHKYTGLLCPEHYAKD 180
Query: 180 AEKMLVLPS--FLWKEEQTIDADSLK 203
+ V P+ +L Q I D LK
Sbjct: 181 EHRSHVDPNMLYLLDRFQAIQFDELK 206
>gi|42559449|sp|Q7USC2|RECO_RHOBA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 270
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLAQ 64
AI+L + E ++I+ ++T+ GR + + + + L ++ + +
Sbjct: 2 AIVLRTVDFSETSLIVTLLTKDLGRISALAKGARRLKGPFEGSLDLLSVCAITLIDKPGD 61
Query: 65 NLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L L S G L + + +P EL+DM +
Sbjct: 62 TLDLLTESKLRRRFRGAQRSLERLHAGYYIAEMLRLLVDDDDPHRELFDMTLSAMGMIDG 121
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ K + + L+ +G +C V G
Sbjct: 122 EGHVAKTLLAFDAQCLRLLGHSPATQRCTVCG 153
>gi|312196054|ref|YP_004016115.1| DNA repair protein RecO [Frankia sp. EuI1c]
gi|311227390|gb|ADP80245.1| DNA repair protein RecO [Frankia sp. EuI1c]
Length = 243
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 6/204 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L GE + I+ + TR+ GR + + S R L+ V +
Sbjct: 4 YRDEGVVLRTMPLGEADRIVTLFTRRNGRVRAVAKGVRRTSSRFGARLEPAMYVDLQLHQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++L S+ A L + ++ L E L L +
Sbjct: 64 GRSLDT-VTQADLLGSYGAVLATDYARHTAAAVMLETAERLTSEEREPALRLFLLLVGGL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ S + ++ LL+ + G+G+ L C G VS GG VC
Sbjct: 123 RTLASGEHPPGLVMDAFLLRALAVSGYGMALDDCARCGEPGPHPSVSVAGGGVVCPRCRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADS 201
A + V L + D
Sbjct: 183 HGAASVSVTAVQLLADLLHGDWAE 206
>gi|330469589|ref|YP_004407332.1| DNA repair protein reco [Verrucosispora maris AB-18-032]
gi|328812560|gb|AEB46732.1| DNA repair protein reco [Verrucosispora maris AB-18-032]
Length = 270
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 10/183 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L V+ GE + I+ ++TR++GR R + + L+ V +
Sbjct: 9 YRDDAVVLRVQKLGESDRIVTLLTRRHGRLRAVARGVRRTTSKFGARLEPFGHVDLQLAG 68
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
LG + E ++ + + L +I L E L
Sbjct: 69 DPKGELGSSLHTVSQVEGIDLYGKRFLGDYPRYTAASAIAETAERLTPVEREPSLRLFQL 128
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ I + ++ LL+ + G+ LT C V G S +GGAVC
Sbjct: 129 TLGALRALAQGEHAITLVLDAYLLRGMALAGWAPALTACAVCGTPGRHRAFSVPAGGAVC 188
Query: 173 RSV 175
Sbjct: 189 PDC 191
>gi|258652079|ref|YP_003201235.1| DNA repair protein RecO [Nakamurella multipartita DSM 44233]
gi|258555304|gb|ACV78246.1| DNA repair protein RecO [Nakamurella multipartita DSM 44233]
Length = 248
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 6/190 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A++L V GE + I+ ++TR+ G+ + + + + L+ + V + +
Sbjct: 4 YRDSAVVLRVTKLGEADRIVSLLTRRTGKVRAVAKGVRRTKSKFGGRLEPFSHVDLQLYA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E L+ A L + +I L E L L +
Sbjct: 64 -GRNLDIVTQAETLDPFGATLAADYSRYTCATAIAETAERLTAEEREPSLRLYLLVVSAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ L +C G SGGA+C
Sbjct: 123 RALTESGRGPSLILDAFLLRAMVLAGWAPALRECARCGSPGPHSAFHVPSGGALCPDCRS 182
Query: 178 PYAEKMLVLP 187
+ + P
Sbjct: 183 GSSGSVRPAP 192
>gi|260061484|ref|YP_003194564.1| DNA repair protein [Robiginitalea biformata HTCC2501]
gi|88785616|gb|EAR16785.1| DNA repair protein [Robiginitalea biformata HTCC2501]
Length = 239
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 8/216 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI----LQAGNLVRV 56
M AI+L YGE ++I+ + T GR ++ R + Q + +
Sbjct: 1 MPTSTKAIVLSSLKYGESSLIVRMYTEASGRQTYMLKGILKRRKGGLRPGFFQPLTQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLN 115
+ LG R ++ A + S L L + E E EL+ L
Sbjct: 61 VSGTVRPGRLGYLREALIAYPYATVHSDIRKGAIALFLSEVLSESIREEETNPELFSYLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L I ++ + L + +GF D T K G +
Sbjct: 121 HTLQWLDQHQRIANFHIRFLMGLTRYLGFYPDQTDSHAPYFDLSEGAYCSKPGLNPVLAD 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDAD---SLKSAFQL 208
G A + ++ +F + L ++ L
Sbjct: 181 GNLEAFRNILGTNFDAIHTVELTQAERRELLNSLIL 216
>gi|20532233|sp|Q97JI4|RECO_CLOAB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|325508710|gb|ADZ20346.1| DNA repair protein RecO [Clostridium acetobutylicum EA 2018]
Length = 247
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 9/244 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ ++L + E + I+ + T + G+ R + +R + + N N+ +
Sbjct: 4 FKSRGVVLKSQDINENDKIIWIFTEKMGKISVIARGAKKNRSKYLPITINFCFGNFVFFK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
E+++S L Y + + E E +L+
Sbjct: 64 GKSMFSLNEGEIIDSFQEFLSDFDTLTYCSYLCELIDISMAEGESNRDLFKEFVSTFYLI 123
Query: 122 KIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV-----CRSV 175
K I + EL LL+ G+ L+L C + +
Sbjct: 124 KNKVGDIETLSRAFELKLLRYTGYNLNLDYCSKCKKRINSASYISYKYYGGICGDCSKEG 183
Query: 176 GLPYAEKMLVLPSFLWK-EEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
G+ ++L K + + +L + + + + + N + L
Sbjct: 184 GMSVTPAAYSSLNYLSKLPIEKVYRVNLNDNIKNEMFEILRGFISQNYAKIPKS-LDLLN 242
Query: 235 KLLE 238
+ E
Sbjct: 243 IIKE 246
>gi|116617892|ref|YP_818263.1| DNA replication and repair protein RecO [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122271907|sp|Q03Y32|RECO_LEUMM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116096739|gb|ABJ61890.1| DNA replication and repair protein RecO [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 259
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 17/237 (7%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS----R 61
I+L R Y + ++++ ++T YG R + + V + R
Sbjct: 5 RGIVLYTRQYKDNDLLVRILTETYGMRTFLARGAKKATSKLSAGTQPYTIVTFDGALPKR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + + Y + E E Y+ L + L
Sbjct: 65 ETGLGYMNDVQDIKVYSRLIEDIEANAYAALIASLIDASFEEGEKITRWYNQLYVALQKL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL +G +L +TG S K G + +
Sbjct: 125 DEGLDPQIIANIFEIQLLVPLGVAPNLRADPITGQVDGKFDYSEKYNGIISEHHFNLDDQ 184
Query: 182 KMLVLPS--FLWKEEQTIDADSLKS---------AFQLTDYFL-NKYA-LQHNIIHC 225
++++ F ++ ID + Q ++ K L+
Sbjct: 185 RLMLDQKTVFYLRQFSVIDMRQVHDIKMSAITKRGLQRVIDYIYEKQVGLKPRAKSF 241
>gi|285019299|ref|YP_003377010.1| recombination protein o [Xanthomonas albilineans GPE PC73]
gi|283474517|emb|CBA17018.1| probable recombination protein o [Xanthomonas albilineans]
Length = 256
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 68/245 (27%), Gaps = 14/245 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + +L + E ++++E+++ +GR R Q + Q + ++ S
Sbjct: 1 MIEHEPGFVLHAWPWRETSLLVEILSVHHGRLGVLARGVQGPKKQALRATLQPLQSIRFS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A L+ L G R P +P +LY
Sbjct: 61 AQRRGELAQLRAAEPLDTAPRLTGEAMLAGFYINELTLRLAPRDDPAPDLYLAYARVRAR 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA---VCRSVGL 177
+ + E +L+ +G DL + + R G
Sbjct: 121 LAAEAPLAWSLRCFERDMLEALGVWFDLRHDGDGAPIDPAARYALDPEHGPRRLLRDHGH 180
Query: 178 PYAEKMLVLPSFLWKEEQTI----DADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
M + L + T+ D L+ ++ L H E
Sbjct: 181 DQRSGMATGRALLALADDTLPVAEDLPGLRRGMRVV-------LLHHLGGRGLKSWEMLE 233
Query: 234 GKLLE 238
L +
Sbjct: 234 NLLRK 238
>gi|160871667|ref|ZP_02061799.1| DNA repair protein RecO [Rickettsiella grylli]
gi|159120466|gb|EDP45804.1| DNA repair protein RecO [Rickettsiella grylli]
Length = 238
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 72/235 (30%), Gaps = 16/235 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-----SHRMQPILQAGNLVRVNWRSR 61
A IL R Y + +++++ T Q+GR + + R + LQA + ++WR +
Sbjct: 10 AYILHTRPYRDTSLLIDAFTAQHGRISLIAKGARGIRGKKSRFKGTLQAFVPLLLSWRGK 69
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ L+ L G L L +P EL+ L
Sbjct: 70 TDLLSLINAEPHM--FPLPPLTGPLLACGFYLNELLTYLLYRYDPYPELFHAYQTTLYRL 127
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSVGLP 178
+ E LL +G+ L L K T P G C + +P
Sbjct: 128 FDNPMFA--LRLFEKKLLAELGYALSLNKESRTHQALLPHQFYQFIPSQGLVDCFNQSIP 185
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFL 233
E L A +L L Y L+ RE F+
Sbjct: 186 QQFIFSGASLLAMHHESWDTPSHLLDAKRLFRLAL-NYLLE---GKTIRSRELFI 236
>gi|315925209|ref|ZP_07921423.1| recombination protein O [Pseudoramibacter alactolyticus ATCC 23263]
gi|315621443|gb|EFV01410.1| recombination protein O [Pseudoramibacter alactolyticus ATCC 23263]
Length = 255
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 3/205 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR-L 62
+ A+++ + + + + IL + T G+ + + + + N+
Sbjct: 5 RTKALVIREQPFQDHDKILTLFTETEGKQKAIAKGARRRKGSLGVATQLFAYGNFVYYPG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH- 121
++E+ A G + L F + EL L
Sbjct: 65 KNFANINEVTLIEAFYALRGDVMKMALGSYLLELLDVFFDFYQGDPELLKAATHILYYLS 124
Query: 122 -KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + V +L L + G G LT+CV +G + L S GG V +
Sbjct: 125 ENMAASDEALAVGFQLKLTRRQGLGPVLTRCVRSGEREALTAFSIADGGVVTEAYRRAGD 184
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSA 205
+ + + +
Sbjct: 185 QALSADLRRALERLMGESIRDICHG 209
>gi|150015732|ref|YP_001307986.1| DNA repair protein RecO [Clostridium beijerinckii NCIMB 8052]
gi|149902197|gb|ABR33030.1| DNA repair protein RecO [Clostridium beijerinckii NCIMB 8052]
Length = 249
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 2/170 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-S 60
+ A+I+ + + E + ++ T + G+ VR + + + + L +
Sbjct: 6 IVETKAVIIKTQDFKENDKLVWFYTEKLGKITAIVRGAKKSKSKFLALTLPLCYGEYMVY 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++++S L Y + + E +EL+ L L
Sbjct: 66 KGKSLYTLQEGKIIQSFQGLLNDLHKLTYSSYLCELIDIACTDNEINMELFKTLITTLYL 125
Query: 121 HKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ + EL LLK G+ L L C V S
Sbjct: 126 LNTDALDYELLIRAFELRLLKTTGYNLTLNNCSVCRKKISSSNYISLSHY 175
>gi|311741367|ref|ZP_07715191.1| recombination protein O [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303537|gb|EFQ79616.1| recombination protein O [Corynebacterium pseudogenitalium ATCC
33035]
Length = 238
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 6/199 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ +GE + ++ ++TR +G + + + + LQ + V
Sbjct: 4 NYRDRAVVIRTYDFGEADRVIVLLTRDHGLVRAVAKGVRRAKSRFGSRLQLFVNLDVQLY 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
V + + + R
Sbjct: 64 VGKNLATISQADTVDYFGARLIEDYERYTAACAVLESAERLAFADAAHDPYLYDSVTATL 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV---- 175
+ L + + G+ L C P GGA C
Sbjct: 124 EQLQTADPTMALDAFLLQAMAHAGWAPSLFNCAQCNRPGPHHAFHPAVGGAACHECRPPG 183
Query: 176 GLPYAEKMLVLPSFLWKEE 194
+ L L
Sbjct: 184 AAEVDPETLHHLWLLAHNH 202
>gi|22536205|ref|NP_687056.1| DNA repair protein RecO [Streptococcus agalactiae 2603V/R]
gi|25010094|ref|NP_734489.1| DNA repair protein RecO [Streptococcus agalactiae NEM316]
gi|42559476|sp|Q8E2G8|RECO_STRA5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|42559477|sp|Q8E7X6|RECO_STRA3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|22533023|gb|AAM98928.1|AE014192_4 recombination protein O [Streptococcus agalactiae 2603V/R]
gi|23094445|emb|CAD45664.1| Unknown [Streptococcus agalactiae NEM316]
Length = 253
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 64/197 (32%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
Q ++L R+Y E + ++++ T G+ + FV++ + +LQ + +
Sbjct: 5 QTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDN 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + + Y + + +L+ L L +
Sbjct: 65 GLSYIDDYKEVLAFQETNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIED 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ LL+ G L+ CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEVQLLERFGVALNFHDCVFCHRVGLPFDFSHKYSGLLCPNHYYKDERRN 184
Query: 184 LVLPSFLWKEEQTIDAD 200
+ P+ L+ +
Sbjct: 185 HLDPNMLYLINRFQSIQ 201
>gi|212715506|ref|ZP_03323634.1| hypothetical protein BIFCAT_00404 [Bifidobacterium catenulatum DSM
16992]
gi|212661588|gb|EEB22163.1| hypothetical protein BIFCAT_00404 [Bifidobacterium catenulatum DSM
16992]
Length = 242
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 11/208 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+QD+ ++L GE + I+ ++TR +G+ + + + + L+ V + +
Sbjct: 4 YQDEGVVLRTVKLGEADRIVTLLTRDHGKIRAVAKGVRRTKSRFGGRLEPFMRVSL-LIA 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL--PEREPCLELYDMLNIFL 118
+ E + ++ + + I L E E + Y ++ L
Sbjct: 63 EGRSLDVISQAESVSAYARGICTDFKAYTAANVICETADKLVVTEHERSVAQYRLVLGAL 122
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
N K I + L G+ L CVV G +S S G
Sbjct: 123 NALSKHAHEAAVIGDSYVMRALAIAGWTPRLRACVVCGDP-----ISADRTWFFSISAGG 177
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ SF +L
Sbjct: 178 LMCSTDHIRESFDVSWNAICQLQALVDG 205
>gi|116750901|ref|YP_847588.1| recombination protein O, RecO [Syntrophobacter fumaroxidans MPOB]
gi|171460804|sp|A0LP01|RECO_SYNFM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116699965|gb|ABK19153.1| Recombination protein O, RecO [Syntrophobacter fumaroxidans MPOB]
Length = 250
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 1/153 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +AIIL R +GE + ++ + TR GR G + + R + V + R
Sbjct: 5 RTEAIILNTRDHGESDRLVGLYTRSGGRLQGIAKGARRSRKRFANTLEPCSLVELQFREK 64
Query: 64 QNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
L LE + + + +PE +P EL+++L L
Sbjct: 65 GTLVWLESCKLLEPFLSLRTELIRWGIAALISEIVIEMVPEGDPQPELFELLKETLRQLC 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + +G+ L C + G
Sbjct: 125 EDKDSLNVALLFIFRFQDKMGYLPALENCGICG 157
>gi|269956964|ref|YP_003326753.1| DNA repair protein RecO [Xylanimonas cellulosilytica DSM 15894]
gi|269305645|gb|ACZ31195.1| DNA repair protein RecO [Xylanimonas cellulosilytica DSM 15894]
Length = 258
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 6/204 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDAI+L GE + I+ ++TR+ G+ G + + S R L+ +V V
Sbjct: 13 YRDDAIVLRTHKLGEADRIVTLLTRENGKVRGVAKGVRRTSSRFGARLEPFMVVDVQLHV 72
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++ + + ++ L E E + +
Sbjct: 73 GRSLDTVTQVET-IGAYARTICEDYVLYTAGAPMLEAADRLVEAEREPAVQQYWLLAGAL 131
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ T C G S +GGAVC
Sbjct: 132 RALAQRDHAPSLVLDSYLLRALAVAGWAPSFTDCARCGEPGPHHSFSVATGGAVCSRCRP 191
Query: 178 PYAEKMLVLPSFLWKEEQTIDADS 201
P + L T D +
Sbjct: 192 PGSTAPAPETFELLAALLTGDWAT 215
>gi|33593413|ref|NP_881057.1| hypothetical protein BP2429 [Bordetella pertussis Tohama I]
gi|33572769|emb|CAE42701.1| hypothetical protein BP2429 [Bordetella pertussis Tohama I]
gi|332382822|gb|AEE67669.1| hypothetical protein BPTD_2387 [Bordetella pertussis CS]
Length = 195
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 6/144 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L ++ E ++I++ +R+YG + + +P+L A + ++W
Sbjct: 12 PGYMLHATAWRETSLIVQAFSREYGCIALVAKGAKRPYSVLRPVLSAFQPLLLSWSGAGE 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E + L + L R LP + LYD + L
Sbjct: 72 VKTMTRA----EIAGVRPLGGPALMSAWYMNELLLRLLPCEDAHPVLYDAYDTALTQLSA 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD 147
S + E +LL+ G+GLD
Sbjct: 128 GSRAAGALRRFEWILLRETGYGLD 151
>gi|262203043|ref|YP_003274251.1| DNA repair protein RecO [Gordonia bronchialis DSM 43247]
gi|262086390|gb|ACY22358.1| DNA repair protein RecO [Gordonia bronchialis DSM 43247]
Length = 252
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 5/183 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M + +D+A++L GE + I+ ++T ++G + + + L+ V V+
Sbjct: 1 MRFYRDEAVVLRQHKLGEADRIITLLTAEHGLVRAVAKGVRRTRSKFGARLEPFAHVDVH 60
Query: 58 -WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + + S ER P +L+ +
Sbjct: 61 LYPGRNLDVVTQVHSLHAYSDAIAADYGRYTTACAVLETAERLAGEERAPAPQLHRLTVG 120
Query: 117 FLNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + I L + G+ L +C GGAVC
Sbjct: 121 ALAALAEDRRPRELILDAFLLRAMHCAGWMPALDECARCATPGPHRAFHVAVGGAVCLHC 180
Query: 176 GLP 178
P
Sbjct: 181 RPP 183
>gi|88855029|ref|ZP_01129694.1| DNA repair protein RecO [marine actinobacterium PHSC20C1]
gi|88815557|gb|EAR25414.1| DNA repair protein RecO [marine actinobacterium PHSC20C1]
Length = 242
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 4/183 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ +++R++G+ + + + L+ + +
Sbjct: 4 YRDEAVVLRTHKLGEADRIVTMLSREHGKIRAVAKGVRRTASKFGARLEPFMVADIQCYI 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + E L S+ + + + +V + + + L+ Y +L L
Sbjct: 64 GRSLDI-IQQAESLGSYGSDITADYASYTAASVMVETADKVTDDDGSLQQYLLLVGALRS 122
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L L G+ C VTG + GG V V P
Sbjct: 123 LARREHNPSLTLDSYLLRSLSIAGWAPSFVDCAVTGAPGPHSVFVAQMGGVVSDEVAPPG 182
Query: 180 AEK 182
A +
Sbjct: 183 APR 185
>gi|145595959|ref|YP_001160256.1| DNA repair protein RecO [Salinispora tropica CNB-440]
gi|145305296|gb|ABP55878.1| DNA repair protein RecO [Salinispora tropica CNB-440]
Length = 279
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 10/183 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L V+ GE + I+ ++TR++GR R + R L+ V +
Sbjct: 9 YRDDAVVLRVQKLGESDRIITLLTRRHGRLRAVARGVRRTTSRFGARLEPFGHVDLQLAG 68
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ G + E ++ + +LL ++ L E L
Sbjct: 69 DPKGHQGSSLHTVSQVEGIDLYGKRLLGDYPRYTAASAVCETAERLTPVEREPSLRLFQL 128
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ S + ++ LL+ + G+ L C V G S +GGAVC
Sbjct: 129 TLGALRALASGEHAATLVLDAYLLRGMALAGWAPALAGCAVCGTPGRHRAFSVPAGGAVC 188
Query: 173 RSV 175
Sbjct: 189 LDC 191
>gi|302869287|ref|YP_003837924.1| DNA repair protein RecO [Micromonospora aurantiaca ATCC 27029]
gi|315504238|ref|YP_004083125.1| DNA repair protein reco [Micromonospora sp. L5]
gi|302572146|gb|ADL48348.1| DNA repair protein RecO [Micromonospora aurantiaca ATCC 27029]
gi|315410857|gb|ADU08974.1| DNA repair protein RecO [Micromonospora sp. L5]
Length = 290
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 10/183 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L V+ GE + I+ + TR++GR R + R L+ V +
Sbjct: 9 YRDDAVVLRVQKLGESDRIITLFTRRHGRLRAVARGVRRTTSRFGARLEPFGHVDLQLAG 68
Query: 61 RLAQNLG-----EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
N G + E +E + + L +I L E L
Sbjct: 69 DPKGNQGSSLHTVSQVEAIELYGKRFLGDYPRYTAASAIAETAERLTPVEREPSLRLFQL 128
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + ++ LL+ + G+ L C V G S +GGAVC
Sbjct: 129 TLGAMKSLARGEHATTLVLDAYLLRGMAFAGWAPALAACAVCGEPGRHRAFSVPAGGAVC 188
Query: 173 RSV 175
Sbjct: 189 PDC 191
>gi|326791153|ref|YP_004308974.1| DNA repair protein RecO [Clostridium lentocellum DSM 5427]
gi|326541917|gb|ADZ83776.1| DNA repair protein RecO [Clostridium lentocellum DSM 5427]
Length = 252
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 73/257 (28%), Gaps = 23/257 (8%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + A+++ GE + + + T+ GR + V ++
Sbjct: 1 MMVRTKALVIKEYIVGESDKYITLFTKDLGRIQAIAPKAKKSDKGFASATQLFVYGDFML 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+++E S Y + ++ EL + + L
Sbjct: 61 TSYKDTYRLVSVDLIEMFHNIRNDLSALSYASYMMEFIYYVTEPGLSQSELLKLTLVTLQ 120
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA-----VCR 173
K + +I E+ L +GF L CV G+ D + A VC+
Sbjct: 121 ALSKSEADYKRIRRVFEIRALGLLGFMPQLFACVDCGLAIDEKAEAHYYFSAEAGGLVCK 180
Query: 174 SVGLPYAEKM-----------LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
Y + + +L L + ++ ++
Sbjct: 181 GCKGTYEDGVSLSYSTLYTLQYILTVSLKQLYHFQISEEVQKELDAVG-----NHYVPYY 235
Query: 223 IHCHLLRENFLGKLLEL 239
+ +F+ +L +L
Sbjct: 236 VDKPFKTLDFIERLEKL 252
>gi|46205206|ref|ZP_00048866.2| COG1381: Recombinational DNA repair protein (RecF pathway)
[Magnetospirillum magnetotacticum MS-1]
Length = 194
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 6/184 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDAI+L + GE + I+ ++TR++G+ + + S R L+ LV V +
Sbjct: 4 YRDDAIVLRAQKLGEADRIVTLLTREHGKVRAVGKGVRRTSSRFGARLEPFMLVDVQLYA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + ++ ++ L E + +
Sbjct: 64 GRSLDTVTQAET-IGPYARRICEDYGLYTAGAVMLETAERLVADEREPAVQQYWLLAGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ C G + GGAVC
Sbjct: 123 RALSEHAHAPGLVLDSYLLRALAVAGWAPSFVDCARCGEPGPHHAFAVAQGGAVCSRCRP 182
Query: 178 PYAE 181
P +
Sbjct: 183 PGST 186
>gi|332670837|ref|YP_004453845.1| DNA repair protein RecO [Cellulomonas fimi ATCC 484]
gi|332339875|gb|AEE46458.1| DNA repair protein RecO [Cellulomonas fimi ATCC 484]
Length = 243
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 8/179 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++TR +G+ + + S R L+ V V +
Sbjct: 4 YRDEAIVLRTHKLGEADRIVTLLTRSHGKVRAVGKGVRRTSSRFGSRLEPFMHVDVQLST 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ ++ + +L+ G + R + + Y +L +
Sbjct: 64 GRSLDIVTQAETLGAYGRPVCEDYTLYTAGTVMLETAERLVEAEHEPALQQYWLLVGAVR 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++ LL+ + G+ T C G + SGGAVC
Sbjct: 124 ALAGREHAPGLV--LDSYLLRALAVAGWAPSFTDCARCGEPGPHQAFAVASGGAVCGEC 180
>gi|170725606|ref|YP_001759632.1| DNA repair protein RecO [Shewanella woodyi ATCC 51908]
gi|169810953|gb|ACA85537.1| DNA repair protein RecO [Shewanella woodyi ATCC 51908]
Length = 228
Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 13/229 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R + + ++++ ++ GR R ++ ILQ + R
Sbjct: 3 RGYVLHTRPFTDSSVLVNMLVDGQGRVDCVARLGSGKTSIKSILQPFQPLIFELSGRSNL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V + A +S + G + R + E++ + + L
Sbjct: 63 KN---LIRVESASPAVPISGEVSFAGFYLNELMVRCISVDHGAEEIFFVYHKTLMAMAAG 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ EL LLK IG L + + + ++G +
Sbjct: 120 FCQSQLR-YFELSLLKEIGLMPTLNVDIAQDAIEADYYYRLLPDEGFVNALGPKTSH--Y 176
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L E T+ A+ K A L + L + R F
Sbjct: 177 SGEMLLSLESHTLQAEHFKQAKH-----LMRLLLAPCLGDKPLKSRALF 220
>gi|159899227|ref|YP_001545474.1| DNA repair protein RecO [Herpetosiphon aurantiacus ATCC 23779]
gi|238687077|sp|A9B168|RECO_HERA2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|159892266|gb|ABX05346.1| DNA repair protein RecO [Herpetosiphon aurantiacus ATCC 23779]
Length = 253
Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 8/180 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ +A+I+ GE + IL + T +G+ R + ++ L+ R+ +
Sbjct: 6 YTTEALIIRRSDVGEADRILTIYTPHHGKLSVTARGVRKMTSKLAGHLELFIHTRLQL-A 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY---DMLNIF 117
+ V++ + S G L + P+ L+
Sbjct: 65 KGRSFDVVTESRVVQPFRSLREDLSRISQGYYVAELLDQMTPDESDNPALFRLTCETLAA 124
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT--QDLLWVSPKSGGAVCRSV 175
L+ I EL L G+ L C D SP +GG +C+
Sbjct: 125 LDVLDDVVRRDVILRYYELHTLILSGYRPHLFDCANCERELSPDADRYSPITGGVLCQQC 184
>gi|85709082|ref|ZP_01040148.1| DNA repair protein RecO [Erythrobacter sp. NAP1]
gi|85690616|gb|EAQ30619.1| DNA repair protein RecO [Erythrobacter sp. NAP1]
Length = 200
Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 3/148 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M AI++ R++GE +I +MT ++G +V G+ +++P++ GN + RS
Sbjct: 1 MNISVPAILVAARAHGETAVIARLMTEEHGLVAAYVAGGRGRQLRPVVIPGNSLEAEIRS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L R E+ S + + LPER P L+ L
Sbjct: 61 KSDSQLPFARIELAVSRAPWMTEPLPAAAIGWACALTASTLPERNPYPSLFSAFEALLEA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFG 145
V E MLL+ +G+G
Sbjct: 121 ICHAPSARGWLAAMVAYEAMLLRELGYG 148
>gi|76787396|ref|YP_328746.1| DNA repair protein RecO [Streptococcus agalactiae A909]
gi|92087036|sp|Q3K407|RECO_STRA1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|76562453|gb|ABA45037.1| DNA repair protein RecO [Streptococcus agalactiae A909]
Length = 253
Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 63/197 (31%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
Q ++L R+Y E + ++++ T G+ + FV++ + +LQ + +
Sbjct: 5 QTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDN 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + + Y + + +L+ L L +
Sbjct: 65 GLSYIDDYKEVLAFQEINSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIED 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ LL+ G L+ CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGLPFDFSHKYSGLLCPNHYYKDERRN 184
Query: 184 LVLPSFLWKEEQTIDAD 200
+ P+ L +
Sbjct: 185 HLDPNMLHLINRFQSIQ 201
>gi|167630515|ref|YP_001681014.1| DNA repair protein reco [Heliobacterium modesticaldum Ice1]
gi|238687862|sp|B0TAF3|RECO_HELMI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|167593255|gb|ABZ85003.1| DNA repair protein reco [Heliobacterium modesticaldum Ice1]
Length = 273
Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 2/156 (1%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++ A++L RSYGE + +L ++TR+ G+ + + + L
Sbjct: 1 MRLYRAQALVLRSRSYGEADRLLTLLTRERGKLSAIAKGVRKPTSRLRAGTQPLTHSQLV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+NL A L + S+ L L +L+ +L +
Sbjct: 61 LYEGKNLQTVTQAEPVESFAALHGDVVRFSHASSMAELVDRLSPDHSGADLFPLLLTGWH 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ +L LL +G+ +L+ C+ G
Sbjct: 121 LLS-VFPGDLVACLFQLRLLDRLGYCPELSLCLDCG 155
>gi|226360360|ref|YP_002778138.1| DNA repair protein RecO [Rhodococcus opacus B4]
gi|254764656|sp|C1AUI5|RECO_RHOOB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226238845|dbj|BAH49193.1| DNA repair protein RecO [Rhodococcus opacus B4]
Length = 271
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 7/184 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M ++D+A++L GE + I+ ++TRQ+G + + + + L+ + V
Sbjct: 1 MRLYRDNAVVLRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTKSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + +++ ++ +I+ L E L
Sbjct: 61 LYP-GRNLDIVTQVQTVDAFATDIVDDYTRYTTACAILETAERLAGEERAPALQLHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGF---GLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ +GF L C +GGAVC
Sbjct: 120 GALRAVAEHHRPCELILDAFLLRAMGFAGWAPALDDCARCSAPGPHRAFHVAAGGAVCVQ 179
Query: 175 VGLP 178
P
Sbjct: 180 CRPP 183
>gi|119716162|ref|YP_923127.1| DNA repair protein RecO [Nocardioides sp. JS614]
gi|171704605|sp|A1SI05|RECO_NOCSJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119536823|gb|ABL81440.1| DNA replication and repair protein RecO [Nocardioides sp. JS614]
Length = 244
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M ++D+AI+L GE + I+ ++TRQ GR + + R L+ V +
Sbjct: 1 MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + L + G + R L E + L +
Sbjct: 61 AEGRNLDTITQAETLTPFSKGLGLDYDRYTAGTVMLETADR-LVAEEREPSVQQFLLLVG 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
+ + ++ LL+++ G+ C G
Sbjct: 120 GLRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCG 159
>gi|227543023|ref|ZP_03973072.1| DNA repair protein RecO [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181245|gb|EEI62217.1| DNA repair protein RecO [Corynebacterium glucuronolyticum ATCC
51866]
Length = 241
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 4/180 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+++ A+I+ +GE + I+ +TR G G + + R LQ + V +
Sbjct: 6 YRERAVIVRTYDFGEADRIVVFLTRTRGIVRGVAKGVRRANSRFGSRLQPFVELDVQFYK 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +L+ +++ + +YD + L
Sbjct: 66 GRNLES--VTEADAVTFFGRLIDDYPRYTAASTVLETAEKVSLGAESEGVYDRVLNALAE 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V+ + L ++ ++G+ L C G +GGA+C LP +
Sbjct: 124 LNETGVVTPVLDAFLLHIMSDVGWPPSLFDCAQCGAPGPHEVFHAGAGGALCERCRLPGS 183
>gi|312140282|ref|YP_004007618.1| DNA repair protein reco [Rhodococcus equi 103S]
gi|311889621|emb|CBH48938.1| DNA repair protein RecO [Rhodococcus equi 103S]
Length = 271
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 7/184 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M ++D A++L GE + I+ ++TRQ+G + + + + L+ + V
Sbjct: 1 MRLYRDYAVVLRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTKSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ A ++ +I+ L E
Sbjct: 61 LHP-GRNLDIVTQVSTVDAFGADIVDDYGRYTTACAILETAERLAGEEKAPVPRLHSLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGF---GLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + + ++ LL+ +G+ LT C +GGAVC
Sbjct: 120 GALRAVGDRTRPVELILDAYLLRAMGYAGWAPALTDCARCAAPGPHRAFHVAAGGAVCVH 179
Query: 175 VGLP 178
P
Sbjct: 180 CRPP 183
>gi|300780721|ref|ZP_07090575.1| recombination protein O [Corynebacterium genitalium ATCC 33030]
gi|300532428|gb|EFK53489.1| recombination protein O [Corynebacterium genitalium ATCC 33030]
Length = 245
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 2/178 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A ++ +GE + ++ ++T+ +G + + + + +Q + V
Sbjct: 7 FRDRAFVVRTYDFGEADRVVVLLTQNHGLVRSVAKGVRKTKSRFGSRVQPFVDLDVQLYP 66
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
V + + + R E L+ ++ +
Sbjct: 67 GRNLATITQADTVAYYGSGIIEDFDRYTAACAVLESAERLSYAGEADPALFAEVSTAIKR 126
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + L + G+GL L C G P GGA C + P
Sbjct: 127 LQDAQQATMVLDAFILRAAAHAGWGLSLFDCANCGKPGPHHAFHPALGGATCLNCRPP 184
>gi|331701381|ref|YP_004398340.1| DNA repair protein recO [Lactobacillus buchneri NRRL B-30929]
gi|329128724|gb|AEB73277.1| DNA repair protein recO [Lactobacillus buchneri NRRL B-30929]
Length = 253
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 2/171 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
I+L ++Y E +++++ +TR++G+ + VR + +M+ + + +
Sbjct: 11 GILLYTKAYREHDLLIKFLTREFGKKMFLVRGAKRPRFKMRSAILPFTYGLYGGDIKESG 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L + Y + + P+ EP YD L L
Sbjct: 71 LSYILNDKQLVHFQNISEDITKNAYATYIMSLIDMAYPDGEPIATWYDKLLTGLQLIDQG 130
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I E+ LL G + C + T S GG +C++
Sbjct: 131 FDEQIITNIFEVQLLNAYGVAPNWVDCTICHRTDLPFDYSEAYGGLLCQNH 181
>gi|172041007|ref|YP_001800721.1| DNA repair protein RecO [Corynebacterium urealyticum DSM 7109]
gi|171852311|emb|CAQ05287.1| DNA repair protein RecO [Corynebacterium urealyticum DSM 7109]
Length = 252
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 8/187 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D+A +L GE ++IL ++TR +G + + + + L + V V
Sbjct: 9 NFRDEAFVLRSYKLGEADLILVLLTRSHGVVRAVAKGIRKTKSRFGARLDRFSKVNVQVY 68
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + G + ++ L+ L
Sbjct: 69 RGRSLGKITDTASLASYAGPIVADVDKYFAGAAMLELAQILSTAEGSSEAVFSSLDAGLA 128
Query: 120 CHKIPS------VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
+ + L L G+ L C G P++GG+VC
Sbjct: 129 LLAGTDPATPELPPVSVADRFVLHGLAEAGWMPSLVDCAQCGRPGPHRAFHPRAGGSVCV 188
Query: 174 SVGLPYA 180
P +
Sbjct: 189 LCRPPGS 195
>gi|84496823|ref|ZP_00995677.1| DNA repair protein RecO [Janibacter sp. HTCC2649]
gi|84383591|gb|EAP99472.1| DNA repair protein RecO [Janibacter sp. HTCC2649]
Length = 241
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 12/234 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D I+L GE + I+ V+TR G+ + + + + L+ G LV +
Sbjct: 4 YRDQGIVLRTHKLGEADRIITVLTRGLGKVRTVGKGVRRTKSRFGARLEPGMLVDLQCYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++ + R EREP L+ Y ++ +
Sbjct: 64 GRNLDTVTQAETLESWGDVISRDYDVWTAASAVLETCDRLTEEREPALQQYLLVTGAMRS 123
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV---- 175
+ L L G+ C G SGGAVC S
Sbjct: 124 LAGKEHDPNLVLDAYLLRALAIAGWAPSFHDCAKCGAEGPHRAFHIVSGGAVCSSCRPPG 183
Query: 176 -GLPYAEKMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFLNKYALQHNIIHC 225
P E + +L + L + DA L + LT FL + L+H +
Sbjct: 184 SAAPAPETLRLLAALLAGDWFIADASDLRHRREGSGLTTAFLQ-WHLEHGVRSL 236
>gi|24378553|ref|NP_720508.1| DNA repair protein RecO [Streptococcus mutans UA159]
gi|42559475|sp|Q8DWM0|RECO_STRMU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|24376403|gb|AAN57814.1|AE014855_4 putative DNA repair protein RecO [Streptococcus mutans UA159]
Length = 251
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 2/202 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R + E + ++++ T G+H+ FVR+ + ++ ++Q L +
Sbjct: 5 ETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNH 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + Y + + + L+ L L
Sbjct: 65 GLSYIEDYKGVSLFKEINADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ CV S + G +C +
Sbjct: 125 GLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGLAFDFSHRYSGLLCPEHYEKDLYRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLK 203
+ P +L + QT+ DSLK
Sbjct: 185 HLDPNVPYLLNQFQTLHFDSLK 206
>gi|57234637|ref|YP_181322.1| recombination protein RecO [Dehalococcoides ethenogenes 195]
gi|92087027|sp|Q3Z8X7|RECO_DEHE1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|57225085|gb|AAW40142.1| recombination protein RecO [Dehalococcoides ethenogenes 195]
Length = 253
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 3/157 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++ AII+ GE + IL ++T G GF ++ + + + L+ V+ +
Sbjct: 7 FKTRAIIVRKTKCGEADRILSLLTPDLGLIQGFAKSVRKTKSKLSGHLELFCYSEVSL-A 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + ++S S L F F PE ++ +L L
Sbjct: 66 RGKAIDTVTGSQTIQSFLNIRSSLQLSAMAFYVCELAFHFSPEESANPAIFQLLLSTLEE 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ E+ LL+ G+ +L +C
Sbjct: 126 LDNTTQAELCTKYFEIHLLEMSGYKPELRECANCHQK 162
>gi|227432224|ref|ZP_03914220.1| recombination protein O [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351997|gb|EEJ42227.1| recombination protein O [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 259
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 17/237 (7%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS----R 61
I+L R Y + ++++ ++T YG R + + V + R
Sbjct: 5 RGIVLYTRQYKDNDLLVRILTETYGMRTFLARGAKKATSKLSAGTQPYTIVTFDGALPKR 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + + Y + E E Y+ L + L
Sbjct: 65 ETGLGYMNDVQDIKVYSRLIEDIEANAYAALIASLIDASFEEGEKITRWYNQLYVALQKL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL +G +L +TG S K G + + +
Sbjct: 125 DEGLDPQIIANIFEIQLLVPLGVAPNLRADPITGQVDGKFDYSEKYNGIISENHFNLDDQ 184
Query: 182 KMLVLPS--FLWKEEQTIDADSLKS---------AFQLTDYFL-NKYA-LQHNIIHC 225
++++ F ++ ID + Q ++ K L+
Sbjct: 185 RLMLDQKTVFYLRQFSVIDMRQVHDIKMSAITKRGLQRVIDYIYEKQVGLKPRAKSF 241
>gi|296875493|ref|ZP_06899566.1| recombination protein O [Streptococcus parasanguinis ATCC 15912]
gi|296433560|gb|EFH19334.1| recombination protein O [Streptococcus parasanguinis ATCC 15912]
Length = 259
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 62/188 (32%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ I+L R + E + ++++ T + G+ + FV + R+ +LQ + +
Sbjct: 5 IETRGIVLYNREFREDDKLVKIFTEKSGKRMFFVNHAGKSRLNSMLQPLVTADMLLKIND 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
F+ ++ + Y + + + + L+ L L +
Sbjct: 65 DGLSYIDDFQDVQVYKKINADLFALSYATYVLALADASIHDNQVDPALFAFLEKTLLLME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ E+ +L G L+L +C S + G +C +
Sbjct: 125 EGLDYEVLTNIFEIQILSRFGVILNLHECCFCHRVGLPFDYSFRYSGVLCPDHYDRDERR 184
Query: 183 MLVLPSFL 190
P+ L
Sbjct: 185 AHWHPNVL 192
>gi|296112102|ref|YP_003622484.1| DNA repair protein RecO [Leuconostoc kimchii IMSNU 11154]
gi|295833634|gb|ADG41515.1| DNA repair protein RecO [Leuconostoc kimchii IMSNU 11154]
Length = 263
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 17/249 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVN--WRSRL 62
++L R Y + ++++ ++T G R + + Q LV + R
Sbjct: 6 GVVLYTRQYKDNDLLVRILTETGGLRTFLARGAKRPKSHLSAATQPYTLVIFEGAFPKRN 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + ++ + Y + L E +P Y+ L + L
Sbjct: 66 QGLGYINDIQHITNYPRLMDDIEANAYAALIVSLLDEIFEEGDPLTRWYNQLVLALQKLN 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I E+ LL +G + ++G + S K G + + +
Sbjct: 126 EGLDPQIIANIFEIQLLVPLGVAPNWRVDPISGQSDGRFDYSEKYNGIISEAHYELDDHR 185
Query: 183 MLVLPS--FLWKEEQTIDADSLKS---------AFQLTDYFL-NKYA-LQHNIIHCHLLR 229
+++ F ++ ID + Q ++ + L+
Sbjct: 186 LMLDQKTMFYLRQFSVIDLRQINQISVSNTTKRGLQRVIDYIYERQVGLKPRAKTFIEQM 245
Query: 230 ENFLGKLLE 238
+ L +
Sbjct: 246 HLWQNTLKQ 254
>gi|119026173|ref|YP_910018.1| DNA repair protein RecO [Bifidobacterium adolescentis ATCC 15703]
gi|166221885|sp|A1A2K3|RECO_BIFAA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118765757|dbj|BAF39936.1| DNA repair protein recO [Bifidobacterium adolescentis ATCC 15703]
Length = 246
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 6/158 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+QD+ ++L GE + IL ++TR +G+ + + + + L+ V +
Sbjct: 4 YQDEGVVLRTAKLGEADRILTLLTRDHGKVRAVAKGVRRTKSRFGGRLEPFMRVALLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDMLNIFL 118
+ ++ + ++ + + I L E + Y ++ L
Sbjct: 64 GRSLDVVSQAES-IAAYAGPICADFQAYTAANVICETADKLVATEKEPAVAQYRLVLGAL 122
Query: 119 NCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTG 155
N + I L L G+ L CVV G
Sbjct: 123 NALAKHAHEPSTIGDSYVLRALAIAGWTPRLRVCVVCG 160
>gi|171742448|ref|ZP_02918255.1| hypothetical protein BIFDEN_01560 [Bifidobacterium dentium ATCC
27678]
gi|283456466|ref|YP_003361030.1| DNA repair protein RecO [Bifidobacterium dentium Bd1]
gi|306822358|ref|ZP_07455737.1| recombination protein O [Bifidobacterium dentium ATCC 27679]
gi|309802175|ref|ZP_07696284.1| DNA repair protein RecO [Bifidobacterium dentium JCVIHMP022]
gi|171278062|gb|EDT45723.1| hypothetical protein BIFDEN_01560 [Bifidobacterium dentium ATCC
27678]
gi|283103100|gb|ADB10206.1| DNA repair protein RecO [Bifidobacterium dentium Bd1]
gi|304554356|gb|EFM42264.1| recombination protein O [Bifidobacterium dentium ATCC 27679]
gi|308221255|gb|EFO77558.1| DNA repair protein RecO [Bifidobacterium dentium JCVIHMP022]
Length = 242
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+QD+ ++L GE + I+ ++TR +G+ + + + + L+ V V +
Sbjct: 4 YQDEGVVLRTAKLGEADRIITLLTRDHGKIRAVAKGVRRTKSRFGGRLEPFMRVDV-LVA 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E + ++ + + I L E + + L
Sbjct: 63 EGRSLDVISQAESISAYAGPICADYGAYAAANVIAETADKLVAGE-HERMTMQYRLVLGA 121
Query: 121 HK----IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
I + L G+ L CVV G D
Sbjct: 122 LNALAKHAHDSNAIGDSYVMRALALAGWTPRLRACVVCGDPID 164
>gi|169334056|ref|ZP_02861249.1| hypothetical protein ANASTE_00449 [Anaerofustis stercorihominis DSM
17244]
gi|169258773|gb|EDS72739.1| hypothetical protein ANASTE_00449 [Anaerofustis stercorihominis DSM
17244]
Length = 253
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 6/210 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + I+L + E + IL V T++ G+ +N S + + I Q +
Sbjct: 1 MIREFHGIVLKNIKFSENDRILTVFTKERGKISVMAKNAASKKSKVIAQTSTFSYSYFCL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+N + L + L I L E + + L I++
Sbjct: 61 YPGKNFYTLKSADYIKSFPGLQTDLERLSFASYISELVDIFYEDKMEEPITFNLIIYILD 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFG---LDLTKCVVTGVTQDLLWV-SPKSGGAVCRSVG 176
+ K+ +LK +G D + C + T D ++ SG +C
Sbjct: 121 LLQKEKLEKLSFITLAFMLKLLGISGIIPDFSGCSICSATNDEYYILDFDSGSILCSKCT 180
Query: 177 LPYAEKMLVLPSF--LWKEEQTIDADSLKS 204
+ + + L + ++ + +K+
Sbjct: 181 MKHFSMNKITSKQLDLINKLTYVNVNDIKN 210
>gi|227488411|ref|ZP_03918727.1| DNA repair protein RecO [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091625|gb|EEI26937.1| DNA repair protein RecO [Corynebacterium glucuronolyticum ATCC
51867]
Length = 241
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 4/180 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+++ A+I+ +GE + I+ +TR G G + + R LQ + V +
Sbjct: 6 YRERAVIVRTYDFGEADRIVVFLTRTRGIVRGVAKGVRRANSRFGSRLQPFVELDVQFYK 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
V + +L+ +++ + +YD + L
Sbjct: 66 GRNLESVTGADTV--TFFGRLIDDYPRYTAASTVLETAEKVSLGAESEGVYDRVLNALAE 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
V+ + L ++ ++G+ L C G +GGA+C LP +
Sbjct: 124 LNETGVVTPVLDAFLLHIMSDVGWPPSLFDCAQCGAPGPHEVFHAGAGGALCERCRLPGS 183
>gi|294507177|ref|YP_003571235.1| DNA repair protein recO [Salinibacter ruber M8]
gi|294343505|emb|CBH24283.1| DNA repair protein recO [Salinibacter ruber M8]
Length = 314
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 59/153 (38%), Gaps = 4/153 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ A++L YGE + I+ + T++ G+ + + + LQ +V +
Sbjct: 60 IVRTKAVVLRSIDYGETSQIVTLFTQEKGKLGVMAKGARRPKSSFGATLQPMAYTQVVFY 119
Query: 60 SRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ ++ L ++S GL+ + + + E +P + ++ L
Sbjct: 120 HKPSRTLQTLSESSHVQSFHRLREKLPTITVGLRIVELVDALMEEEDPQPAAFALVVRAL 179
Query: 119 NCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTK 150
+ I + ++ ++L L + +G + +
Sbjct: 180 HRLNIAEARVSNLWPYVQLQLAQILGVAPAVDR 212
>gi|83816235|ref|YP_445302.1| DNA repair protein RecO [Salinibacter ruber DSM 13855]
gi|119361484|sp|Q2S3C9|RECO_SALRD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|83757629|gb|ABC45742.1| DNA repair protein RecO [Salinibacter ruber DSM 13855]
Length = 260
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 59/153 (38%), Gaps = 4/153 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ A++L YGE + I+ + T++ G+ + + + LQ +V +
Sbjct: 6 IVRTKAVVLRSIDYGETSQIVTLFTQEKGKLGVMAKGARRPKSSFGATLQPMAYTQVVFY 65
Query: 60 SRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ ++ L ++S GL+ + + + E +P + ++ L
Sbjct: 66 HKPSRTLQTLSESSHVQSFHRLREKLPTITVGLRIVELVDALMEEEDPQPAAFALVVRAL 125
Query: 119 NCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTK 150
+ I + ++ ++L L + +G + +
Sbjct: 126 HRLNIAEARVSNLWPYVQLQLAQILGVAPAVDR 158
>gi|296120992|ref|YP_003628770.1| DNA repair protein RecO [Planctomyces limnophilus DSM 3776]
gi|296013332|gb|ADG66571.1| DNA repair protein RecO [Planctomyces limnophilus DSM 3776]
Length = 249
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ A+IL V + E + I+ + +R++GR + G+ + + L + V + +
Sbjct: 5 KGTALILRVTDFSETSRIVVMFSREHGRFSALAKGGRRLKGPFESSLDLLSTCDVVFLKK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
+ L L + LY + L L E P E+YD L
Sbjct: 65 ASSGLDLLTEARLVHRFRPEPNQLNALYAGYYVAELILGLTEDYDPHPEIYDEAQKLLES 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
S + + EL++L+ G D C+ G
Sbjct: 125 LADASNLAIKLTRFELIMLRECGQLPDFETCMACG 159
>gi|157374289|ref|YP_001472889.1| DNA repair protein RecO [Shewanella sediminis HAW-EB3]
gi|157316663|gb|ABV35761.1| DNA repair protein RecO [Shewanella sediminis HAW-EB3]
Length = 226
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 13/229 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L R + + ++++ ++ GR R ++ ILQ + R +
Sbjct: 3 RGYVLHTRPFRDSSVLVNMLVDGQGRVDCVARLGSGKSSIKSILQPFQPLIFELSGRSSL 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V + A LS + G L R L+ + L
Sbjct: 63 KN---LSQVEAASPAIPLSGEVSFSGFYLNELLVRCTSVDHGGEALFFTYHRTLMAMAAG 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
++ EL LLK IG LT + + + ++G
Sbjct: 120 FCQSQLR-YFELELLKEIGLMPTLTVDISQDAIEADYYYRLLPDEGFVSALGPKTTH--Y 176
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L E + K A L + L + R F
Sbjct: 177 SGEMLLALNEHKLLPAHFKQAKH-----LMRLMLGPCLGDKPLKSRALF 220
>gi|111018235|ref|YP_701207.1| DNA repair protein RecO [Rhodococcus jostii RHA1]
gi|119361482|sp|Q0SHD7|RECO_RHOSR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|110817765|gb|ABG93049.1| probable DNA repair protein RecO [Rhodococcus jostii RHA1]
Length = 271
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 10/216 (4%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M ++D+A++L GE + I+ ++TRQ+G + + + + L+ + V
Sbjct: 1 MRLYRDNAVVLRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTKSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + +++ ++ +I+ L E
Sbjct: 61 LYP-GRNLDIVTQVQTVDAFATDIVDDYSRYTTACAILETAERLAGEERAPAPQLHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGF---GLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ +GF L C +GGAVC
Sbjct: 120 GALRAVAEHNRPCELILDAFLLRAMGFAGWAPALDDCARCSAPGPHRAFHVAAGGAVCVH 179
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDA---DSLKSAFQ 207
P A L D + + + +
Sbjct: 180 CRPPGAATPSPGVLDLMDALIRGDWASTEDVPESLR 215
>gi|91789483|ref|YP_550435.1| DNA repair protein RecO [Polaromonas sp. JS666]
gi|119361471|sp|Q126K5|RECO_POLSJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|91698708|gb|ABE45537.1| DNA repair protein RecO [Polaromonas sp. JS666]
Length = 249
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 7/150 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ A +L + E ++ILE+ TRQYGR R + +PIL + + +
Sbjct: 8 DEPAYVLHRYDWSESSLILEIFTRQYGRVALVARGAKKPSSSFRPILLPLQPLHIAF--- 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L G L R L +P L+D + +
Sbjct: 65 GGDAEIRTLKSAEWQGGHVMPTGDALLSGYYLNELLMRLLARDDPHPVLFDAYSATVQLL 124
Query: 122 KIPSVI--GKIFVQIELMLLKNIGFGLDLT 149
SV EL LL++IG L
Sbjct: 125 ASQSVDTLQLALRAFELRLLRDIGLLPLLD 154
>gi|295394790|ref|ZP_06805005.1| recombination protein O [Brevibacterium mcbrellneri ATCC 49030]
gi|294972386|gb|EFG48246.1| recombination protein O [Brevibacterium mcbrellneri ATCC 49030]
Length = 242
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 4/203 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M + +D I++G GE ++I+ ++TR +G + + + + L +V
Sbjct: 1 MRFYRDTGIVVGHTKLGEADLIVSILTRDHGLVRAVAKGVRRTKSRFGSRLDLFMMVDFQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++ + + +F + + Y +L+
Sbjct: 61 AHIGRNLDIVTQVELIEPFGHGIVGDYDVFAAAAAMAETAAKLTENEPNTRDQYLLLSAA 120
Query: 118 LNCHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L ++ L ++ G+ L CV G S SGG VC +
Sbjct: 121 LRSLCNREHPPRLALNAYLLRAMRTAGWEPGLDACVSCGAPGPHRAFSFNSGGVVCVACR 180
Query: 177 LPYAEKMLVLPSFLWKEEQTIDA 199
+ L +
Sbjct: 181 TAADTNAGEDATVLLHNLLNANW 203
>gi|225351488|ref|ZP_03742511.1| hypothetical protein BIFPSEUDO_03083 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157832|gb|EEG71115.1| hypothetical protein BIFPSEUDO_03083 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 242
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 6/158 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+QD+ ++L GE + I+ ++TR +G+ + + + + L+ V + +
Sbjct: 4 YQDEGVVLRTVKLGEADRIVTLLTRDHGKIRAVAKGVRRTKSRFGGRLEPFMRVSL-LIA 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL--PEREPCLELYDMLNIFL 118
+ E + ++ + + I L E+E + Y ++ L
Sbjct: 63 EGRSLDVISQAESVSAYARGICTDFKAYTAANVICETADKLVVTEQERSVAQYRLVLGAL 122
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
N K I + L G+ L CVV G
Sbjct: 123 NALSKHAHEAAAIGDSYVMRALAIAGWTPRLRACVVCG 160
>gi|116333399|ref|YP_794926.1| recombinational DNA repair protein (RecF pathway) [Lactobacillus
brevis ATCC 367]
gi|122269914|sp|Q03SC7|RECO_LACBA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116098746|gb|ABJ63895.1| DNA replication and repair protein RecO [Lactobacillus brevis ATCC
367]
Length = 260
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
I+L R Y E++ +++ T+++G+ + VR + + + ++ +
Sbjct: 9 HGILLFRRDYAERDFLIKFFTQEFGKKMFLVRGAKKRGFKMVADILPFTVGSYVGDIADD 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
Y + + P+ +P + Y + L
Sbjct: 69 GLSYIRTARETRQFQDISADIFKNAYATYIMSLVDTAFPDSQPLPDWYHRVQRALTLIDD 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ +E+ L+ G L C V G S GG +C++
Sbjct: 129 GVNAAIVTNIMEIQLMPAFGVAPQLQGCAVCGRNDLPFDYSESYGGLLCQAH 180
>gi|325677060|ref|ZP_08156730.1| recombination protein O [Rhodococcus equi ATCC 33707]
gi|325552131|gb|EGD21823.1| recombination protein O [Rhodococcus equi ATCC 33707]
Length = 296
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 6/181 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A++L GE + I+ ++TRQ+G + + + + L+ + V
Sbjct: 29 YRDYAVVLRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTKSKFGARLEPFAHIDVQLHP 88
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +++ A ++ +I+ L E
Sbjct: 89 -GRNLDIVTQVSTVDAFGADIVDDYGRYTTACAILETAERLAGEEKAPVPRLHSLTVGAL 147
Query: 121 HKIPSVIGKIFVQIELMLLKNIGF---GLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + ++ LL+ +G+ LT C +GGAVC
Sbjct: 148 RAVGDRTRPVELILDAYLLRAMGYAGWAPALTDCARCAAPGPHRAFHVAAGGAVCVHCRP 207
Query: 178 P 178
P
Sbjct: 208 P 208
>gi|301064134|ref|ZP_07204581.1| DNA repair protein RecO [delta proteobacterium NaphS2]
gi|300441754|gb|EFK06072.1| DNA repair protein RecO [delta proteobacterium NaphS2]
Length = 245
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 4/158 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M+ ++II +GE ++++ T GR G + + R L + L R+ +
Sbjct: 1 MHIS-ESIITRTWEFGETDLLVSFFTVDRGRLKGVAKGARKSTRRFANCLDSFCLTRLEY 59
Query: 59 RSRLAQNLGEFRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ ++L L I P ++D+L
Sbjct: 60 ERKSGRDLYFLNSGKLIHGFPELRADFHALSLASYMIELTETLFPPGVSEPRMFDLLKDA 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
++ + E L G+G++ +C G
Sbjct: 120 FIALSGRIGRDELRIFFEAKALALGGYGINFERCCECG 157
>gi|325130814|gb|EGC53548.1| DNA repair protein RecO [Neisseria meningitidis OX99.30304]
Length = 247
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 12 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITR 219
>gi|254672798|emb|CBA06905.1| DNA repair protein RecO [Neisseria meningitidis alpha275]
Length = 248
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV----CRSVGLPYAE 181
+ E LL +G DL G AV + L +
Sbjct: 130 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCEDADALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITR 220
>gi|149186742|ref|ZP_01865053.1| hypothetical protein ED21_29626 [Erythrobacter sp. SD-21]
gi|148829650|gb|EDL48090.1| hypothetical protein ED21_29626 [Erythrobacter sp. SD-21]
Length = 198
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ + AI+L R +GE +I ++T + G +V G+ +++P++ GNLV R+
Sbjct: 1 MHLRAPAILLAARPHGETAVIARLLTEESGVVAAYVAGGRGRQLRPVVIPGNLVEAEIRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L R E+ +S L + LPER P LY L L
Sbjct: 61 KSDSQLPFARLELAQSRGPWLTEPLPAAAIAWTCALTASALPERNPYPSLYSALAALLEA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFG 145
E++LL+ +G+G
Sbjct: 121 ICNAPSARGWAGALATYEVLLLRELGYG 148
>gi|323359850|ref|YP_004226246.1| recombinational DNA repair protein [Microbacterium testaceum
StLB037]
gi|323276221|dbj|BAJ76366.1| recombinational DNA repair protein [Microbacterium testaceum
StLB037]
Length = 242
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 79/206 (38%), Gaps = 4/206 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L GE + IL +++R+ G+ + + S + L+ + V
Sbjct: 4 YRDEVVVLRTHKLGEADRILTLLSRRNGKIRAVAKGVRRTSSKFGSRLEPFMVADVQLF- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E L S+ A++++ ++V L E E + Y +L L
Sbjct: 63 KGRNLDIVQQAESLGSYGAEIVADYDVYTTASAMVETADRLNEAEATPQQYLLLVGGLRS 122
Query: 121 HKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + L + G+ LT+C G D + + GG VC +
Sbjct: 123 LARGEHSERSVLDSYLLRAMALSGWAPGLTECARCGTVGDHPYFLAQLGGVVCSTCAPAG 182
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSA 205
+ ++ + + + +++ +A
Sbjct: 183 SPRVARDTVDMLRALMAGEWETIDAA 208
>gi|307243730|ref|ZP_07525870.1| DNA repair protein RecO [Peptostreptococcus stomatis DSM 17678]
gi|306492939|gb|EFM64952.1| DNA repair protein RecO [Peptostreptococcus stomatis DSM 17678]
Length = 248
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 3/178 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRL 62
I+L Y +K++IL + TR+YG+ + Q + + + + N+ +
Sbjct: 5 DTQGIVLRAVKYRDKDLILTIFTRKYGKVSAIAKGAQGQKSRFLSASQLFSYNNYNMRKQ 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ + ++S + F Y I + + E +P L+++L L +
Sbjct: 65 KDMFTLYQADNIKSFYNISMDFESFSYASFIIKLVEANIVEGQPNNRLFELLAQTLFLYS 124
Query: 123 IPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLP 178
+ L + +G+ L +C + G S + GG VC +
Sbjct: 125 EKIDNKNLVLDAFLLKFVDYMGYRPQLDRCTICGNKNLKYAVFSVEDGGLVCNNCHKK 182
>gi|315640638|ref|ZP_07895744.1| recombination protein O [Enterococcus italicus DSM 15952]
gi|315483666|gb|EFU74156.1| recombination protein O [Enterococcus italicus DSM 15952]
Length = 257
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 2/191 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ +IL +++ EK+ ++++ T G+ + +VR QP + +
Sbjct: 3 IVESKGLILFAKNHKEKDKLVKIFTESAGKQMFYVRGAHRKNNPLQPAIMPFTEATYISQ 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + L Y + + +R LY L L+
Sbjct: 63 FSEQGLSFLHAAKHIHPFRHLQEDIFLAGYATYLLNLADAAIEDRVYDPHLYQFLKEALH 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
I E+ +L+ G + C + G T S K G +C
Sbjct: 123 FIDEGKDAEIITNIFEVQVLQRFGVQFEWQHCAICGETHGKFDFSSKYSGVLCERHWSLD 182
Query: 180 AEKMLVLPSFL 190
+ P +
Sbjct: 183 ERRYHADPKAI 193
>gi|117928003|ref|YP_872554.1| DNA repair protein RecO [Acidothermus cellulolyticus 11B]
gi|117648466|gb|ABK52568.1| DNA replication and repair protein RecO [Acidothermus
cellulolyticus 11B]
Length = 263
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 6/183 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L + GE + I+ V+TR+ GR + + S + L+ N V V
Sbjct: 24 YRDDAVVLRTQKLGEADRIITVLTRRNGRVRAVAKGIRRTSSKFGARLEPANHVDVQLYL 83
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + G + + L E + L +
Sbjct: 84 GRSLDIVTQAEIRDPFGDRLRHDYESYTLGTAMLETAEK-LTAEEREPAIRLYLLLLGAL 142
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + +L+ + G+ L C G W S +GG VC
Sbjct: 143 RALTEQRHDARLIFDAFVLRALATSGYQPALDDCARCGAQGPHRWFSVPAGGLVCGDCRP 202
Query: 178 PYA 180
P +
Sbjct: 203 PGS 205
>gi|304386731|ref|ZP_07369001.1| recombination protein O [Neisseria meningitidis ATCC 13091]
gi|304339189|gb|EFM05273.1| recombination protein O [Neisseria meningitidis ATCC 13091]
Length = 248
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L + V +W
Sbjct: 13 FLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVSFVPVSASWYGSQELK 72
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
V GL + + +P ELYD L + +
Sbjct: 73 TLHRAEWVGGWRQP---QGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREA 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
E LL +G DL G AV L +
Sbjct: 130 NHIADLRCFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTDALSHEA 189
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 190 GAIVEGQSLIDLREGSFRTAESLQQALKITR 220
>gi|240081161|ref|ZP_04725704.1| RecO [Neisseria gonorrhoeae FA19]
gi|240124109|ref|ZP_04737065.1| RecO [Neisseria gonorrhoeae PID332]
gi|240126274|ref|ZP_04739160.1| RecO [Neisseria gonorrhoeae SK-92-679]
gi|254494292|ref|ZP_05107463.1| DNA repair protein recO [Neisseria gonorrhoeae 1291]
gi|268597271|ref|ZP_06131438.1| DNA repair protein recO [Neisseria gonorrhoeae FA19]
gi|268682733|ref|ZP_06149595.1| DNA repair protein recO [Neisseria gonorrhoeae PID332]
gi|268684857|ref|ZP_06151719.1| DNA repair protein recO [Neisseria gonorrhoeae SK-92-679]
gi|226513332|gb|EEH62677.1| DNA repair protein recO [Neisseria gonorrhoeae 1291]
gi|268551059|gb|EEZ46078.1| DNA repair protein recO [Neisseria gonorrhoeae FA19]
gi|268623017|gb|EEZ55417.1| DNA repair protein recO [Neisseria gonorrhoeae PID332]
gi|268625141|gb|EEZ57541.1| DNA repair protein recO [Neisseria gonorrhoeae SK-92-679]
Length = 247
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V+W
Sbjct: 12 FMLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPASVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWMGGWRQP---QGRALFSGLYVNELVLKLTAREDPMSELYDALAKVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTGALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITR 219
>gi|59801847|ref|YP_208559.1| hypothetical protein NGO1509 [Neisseria gonorrhoeae FA 1090]
gi|194099318|ref|YP_002002416.1| RecO [Neisseria gonorrhoeae NCCP11945]
gi|239999576|ref|ZP_04719500.1| RecO [Neisseria gonorrhoeae 35/02]
gi|240014753|ref|ZP_04721666.1| RecO [Neisseria gonorrhoeae DGI18]
gi|240017201|ref|ZP_04723741.1| RecO [Neisseria gonorrhoeae FA6140]
gi|240113375|ref|ZP_04727865.1| RecO [Neisseria gonorrhoeae MS11]
gi|240116279|ref|ZP_04730341.1| RecO [Neisseria gonorrhoeae PID18]
gi|240118566|ref|ZP_04732628.1| RecO [Neisseria gonorrhoeae PID1]
gi|240121276|ref|ZP_04734238.1| RecO [Neisseria gonorrhoeae PID24-1]
gi|240128777|ref|ZP_04741438.1| RecO [Neisseria gonorrhoeae SK-93-1035]
gi|260439907|ref|ZP_05793723.1| RecO [Neisseria gonorrhoeae DGI2]
gi|268595389|ref|ZP_06129556.1| DNA repair protein recO [Neisseria gonorrhoeae 35/02]
gi|268599448|ref|ZP_06133615.1| DNA repair protein [Neisseria gonorrhoeae MS11]
gi|268601944|ref|ZP_06136111.1| DNA repair protein [Neisseria gonorrhoeae PID18]
gi|268604274|ref|ZP_06138441.1| DNA repair protein [Neisseria gonorrhoeae PID1]
gi|268687160|ref|ZP_06154022.1| DNA repair protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043181|ref|ZP_06568904.1| DNA repair protein recO [Neisseria gonorrhoeae DGI2]
gi|8134656|sp|Q9ZHY2|RECO_NEIG1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238693224|sp|B4RQ94|RECO_NEIG2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|4105531|gb|AAD05426.1| RecO [Neisseria gonorrhoeae]
gi|59718742|gb|AAW90147.1| putative DNA recombination protein O [Neisseria gonorrhoeae FA
1090]
gi|193934608|gb|ACF30432.1| RecO [Neisseria gonorrhoeae NCCP11945]
gi|268548778|gb|EEZ44196.1| DNA repair protein recO [Neisseria gonorrhoeae 35/02]
gi|268583579|gb|EEZ48255.1| DNA repair protein [Neisseria gonorrhoeae MS11]
gi|268586075|gb|EEZ50751.1| DNA repair protein [Neisseria gonorrhoeae PID18]
gi|268588405|gb|EEZ53081.1| DNA repair protein [Neisseria gonorrhoeae PID1]
gi|268627444|gb|EEZ59844.1| DNA repair protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012787|gb|EFE04770.1| DNA repair protein recO [Neisseria gonorrhoeae DGI2]
gi|317164827|gb|ADV08368.1| hypothetical protein NGTW08_1406 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 247
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V+W
Sbjct: 12 FMLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPASVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWMGGWRQP---QGRALFSGLYVNELVLKLTAREDPMSELYDALAKVMEAVCREA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTGALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITR 219
>gi|332799069|ref|YP_004460568.1| DNA repair protein recO [Tepidanaerobacter sp. Re1]
gi|332696804|gb|AEE91261.1| DNA repair protein recO [Tepidanaerobacter sp. Re1]
Length = 254
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 2/178 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ DAI+LG R+ GE + IL + + G+ R + R + + N+
Sbjct: 4 YRTDAIVLGYRNLGEADKILTLFSPDKGKIHAVARGVRRPRNPILAGSQLFSYSNFLILE 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E+ ES + YGL L P + EL+ +
Sbjct: 64 GRNLDTISQCEIKESFYKIRQNLESMAYGLYFAELLRVSTPLEDKNQELFRFFLKTMYLL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLP 178
+ I + E+ L+ GF +L +CV G D ++ S GG +C
Sbjct: 124 QKWENIEILSRIYEVKLMAIQGFAPELFQCVGCGRKSFDKIYFSTAMGGILCHDCHGK 181
>gi|319743900|gb|EFV96290.1| recombination protein O [Streptococcus agalactiae ATCC 13813]
Length = 253
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 64/197 (32%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
Q ++L R+Y E + +L++ T G+ + FV++ + +LQ + +
Sbjct: 5 QTYGLVLYNRNYREDDKLLKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDN 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + + Y + + +L+ L L +
Sbjct: 65 GLSYIDDYKEVLAFQEINSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIED 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ LL+ G L+ CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGLPFDFSHKYSGLLCPNHYYKDERRN 184
Query: 184 LVLPSFLWKEEQTIDAD 200
+ P+ L+ +
Sbjct: 185 HLDPNMLYLINRFQSIQ 201
>gi|160878805|ref|YP_001557773.1| DNA repair protein RecO [Clostridium phytofermentans ISDg]
gi|160427471|gb|ABX41034.1| DNA repair protein RecO [Clostridium phytofermentans ISDg]
Length = 246
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 2/178 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L G+ + L ++T++ G+ F + + + + ++ +N
Sbjct: 8 TGIVLATIPIGDYDKRLTILTKERGKIGAFAKGARRPNSALLACSQPFTYGEFQLYAGRN 67
Query: 66 LGEFRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN-CHKI 123
+ ++++ S YGL E E+ +L L
Sbjct: 68 SYNIQSVNIKNYFGELREDISYVYYGLYFCEFTDYMTREGNDETEMLKLLYQSLRALLNP 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ EL ++ G + +C+ G ++L S +GG C S +
Sbjct: 128 HIGTKLVRYIFELKIISLGGEAPQVFECLNCGTKENLSRFSASAGGCFCESCKQKATD 185
>gi|332532633|ref|ZP_08408509.1| DNA recombination and repair protein RecO [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037849|gb|EGI74298.1| DNA recombination and repair protein RecO [Pseudoalteromonas
haloplanktis ANT/505]
Length = 230
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 13/233 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L R Y + ++L+++ G+ R Q+ + + LQ + VN+ +
Sbjct: 7 TAYLLHRRPYSDSQVMLDMLVEGVGQLRMLARISGRQATKHKAQLQPFQALLVNYSGKYD 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
SH L G R +P EP +++++ L+
Sbjct: 67 LKYINKFELHGNSH---FLKGDELYCGFYLNELTNRIVPVNEPIEQVFELYKTHLSNLNS 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + ++ E LL+ +G+G+D + + S
Sbjct: 124 GANLQEVLRSYEFQLLELLGYGVDFSFDASGEPIDEKQTYSYFPELGFLVQ---EDTRSG 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + + L++Y L+ + RE F+
Sbjct: 181 FSGKQLNAIANHDFSQNDVLYMAK----QLSRYLLKPLLGSKPLKSRELFMAS 229
>gi|154488980|ref|ZP_02029829.1| hypothetical protein BIFADO_02289 [Bifidobacterium adolescentis
L2-32]
gi|154083117|gb|EDN82162.1| hypothetical protein BIFADO_02289 [Bifidobacterium adolescentis
L2-32]
Length = 246
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+QD+ ++L GE + IL ++TR +G+ + + + + L+ V +
Sbjct: 4 YQDEGVVLRTAKLGEADRILTLLTRDHGKVRAVAKGVRRTKSRFGGRLEPFMRVALLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL--ELYDMLNIFL 118
+ ++ + ++ + + I L E Y ++ L
Sbjct: 64 GRSLDVVSQAES-IAAYAGPICADFQAYTAANVICETADKLVATEKEPAAAQYRLVLGAL 122
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
N K I L L G+ L CVV G
Sbjct: 123 NALAKHAHDSSAIGDSYVLRALAIAGWTPRLRVCVVCG 160
>gi|91227850|ref|ZP_01262023.1| DNA repair protein RecO [Vibrio alginolyticus 12G01]
gi|91188360|gb|EAS74656.1| DNA repair protein RecO [Vibrio alginolyticus 12G01]
Length = 207
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 11/205 (5%)
Query: 32 HLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY 89
+ +S R + LQ + + W + + + + L+
Sbjct: 1 MTLMAKGARSKRSNLKGALQPFTPLLLKWSGKGS---MKTLRQAEPISLGLPLTGINLYS 57
Query: 90 GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLT 149
+ + R L P L+ L + EL LL +G+G+D
Sbjct: 58 AMYVNELIGRILMAEVPMPALFHDYLHALTELAHNENPEPALRRFELALLSAMGYGVDFL 117
Query: 150 KCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
C TG D + L E + + + LK+A + T
Sbjct: 118 HCAGTGEPVDPEMTYRYREQKGFIASVRRDNLTFLGNELIAISERRFVTKEQLKAAKRFT 177
Query: 210 DYFLNKYALQHNIIHCH-LLRENFL 233
+ AL+ + RE F+
Sbjct: 178 -----RIALKPYLGGKPLKSREFFI 197
>gi|293398514|ref|ZP_06642692.1| DNA repair protein RecO [Neisseria gonorrhoeae F62]
gi|291610985|gb|EFF40082.1| DNA repair protein RecO [Neisseria gonorrhoeae F62]
Length = 247
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 11/211 (5%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQN 65
+L + E ++ +E +R+YGR R+ + + + +L V+W
Sbjct: 12 FMLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPASVSWYGSQELK 71
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ GL + + +P ELYD L + +
Sbjct: 72 TLHRAEWMGGWRQP---QGRALFSGLYVNELVLKLTAREDPMSELYDALAKVMEAVCGEA 128
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV----GLPYAE 181
+ E LL +G DL G AV L +
Sbjct: 129 NHIADLRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTGALSHEA 188
Query: 182 KMLVLPSFLWK--EEQTIDADSLKSAFQLTD 210
+V L E A+SL+ A ++T
Sbjct: 189 GAIVEGQSLIDLREGSFRTAESLQQALKITR 219
>gi|300768137|ref|ZP_07078042.1| recombination protein O [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494201|gb|EFK29364.1| recombination protein O [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 262
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNW 58
M + I+L R Y E++++++ +T +YG+ + F+R + +M L +
Sbjct: 5 MVTNFNGILLFRRDYRERDMLIKFLTAEYGKKMFFIRGARRRGFKMAAELLPFTMGEYVG 64
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + ++ +L Y + + P+ +P Y L L
Sbjct: 65 DLRDQGLSYINSVKSVQYLEHISQDIALNAYATYVMNLMDVAFPDNQPVGRWYQQLTSAL 124
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ +E+ LL+ G +L C V G + L S GG +C+
Sbjct: 125 QLIDQDVAPALVANVVEIQLLQPFGVAPELRWCTVCGRSDLPLDYSESYGGLLCQQH 181
>gi|296282559|ref|ZP_06860557.1| hypothetical protein CbatJ_03005 [Citromicrobium bathyomarinum
JL354]
Length = 198
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 48/242 (19%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + AI+L R +GE +I ++T + G +V GQ R++P++ GN V + R+
Sbjct: 1 MQLKAPAIVLAARPHGENAVIARMLTHEAGMVAAYVAGGQGRRLRPVVIPGNSVEADIRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A L + E++ S L L LPER P LYD L L+
Sbjct: 61 RSASQLPFGKVELVASRAPWLNEPLPAAAILWVTALTASTLPERNPYPSLYDALGGLLDA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ E++LL+ +G+G
Sbjct: 121 ICHAPSARGWAPALLSYEVLLLRELGYG-------------------------------- 148
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + D +A L +Y L R L +L
Sbjct: 149 -------------GMKPEAGDLPQTLAALGALGPALERYLLAERHGDAMAARGRLLERLA 195
Query: 238 EL 239
+
Sbjct: 196 RI 197
>gi|289705003|ref|ZP_06501416.1| DNA repair protein RecO [Micrococcus luteus SK58]
gi|289558262|gb|EFD51540.1| DNA repair protein RecO [Micrococcus luteus SK58]
Length = 273
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 5/204 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++ +AI+L GE + I+E +T ++G + + S R+ +++ +
Sbjct: 21 FRTEAIVLRTHRLGEADRIIEALTPEHGLVRAVAKGVRKTSSRLGSVVEPFMHSTLQLAR 80
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++L + A L + +I +P +
Sbjct: 81 GRGELHTVSQAQLLHPYAAMLAADYDAYTVAGAIAEAVERVPAVDDDGRRAQYRLFHGAL 140
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + LL+ + G+ +C G + GGAVC
Sbjct: 141 AALARGAHDPRLILHSFLLRALAQAGWAPTFDRCARCGAPGPHTALHVGLGGAVCPECRP 200
Query: 178 PYAEKMLVLPSFLWKEEQTIDADS 201
P A L D +
Sbjct: 201 PGAAHPAPETFDLLSALAAGDWTT 224
>gi|120404781|ref|YP_954610.1| DNA repair protein RecO [Mycobacterium vanbaalenii PYR-1]
gi|119957599|gb|ABM14604.1| DNA replication and repair protein RecO [Mycobacterium vanbaalenii
PYR-1]
Length = 284
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 14/188 (7%)
Query: 1 MYW--------QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQA 50
M W +D A++L GE + I+ ++TR +G + + + L+
Sbjct: 1 MQWETGPMRLYRDRAVVLRQHKLGEADRIVSLLTRDHGLVRAVAKGVRRTRSKFGARLEP 60
Query: 51 GNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL 110
+ V + + +++ + ++S +++ + E
Sbjct: 61 FAHIDVQLHP-GRNLDIVTQVQAIDAFASDIVSDYGRYTCACAMLETAERIAGEERAPVP 119
Query: 111 YDMLNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKS 167
+ + ++ LL+ + G+ L +C +
Sbjct: 120 ALHKLTVAALRAVADGTRPRELVLDAYLLRAMGVAGWAPSLIECARCAAPGPHRAFHVAA 179
Query: 168 GGAVCRSV 175
GG+VC
Sbjct: 180 GGSVCVHC 187
>gi|304316660|ref|YP_003851805.1| DNA repair protein RecO [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778162|gb|ADL68721.1| DNA repair protein RecO [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 248
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 2/184 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
+ ++I+L R GE + ++ + T+ G+ + ++ + + + + +
Sbjct: 4 IKTESIVLKSRLIGESDKVITLFTKTNGKIQAIAKGARNSKSRFLGSSHPFSIGYYVLFH 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYD-MLNIFLNC 120
++E++ S Y +++ L + + + +Y+ + L
Sbjct: 64 GQNYYYVDQWELIHSFLKIDDDILKLSYASYFADVVYKLLQDDDRNINIYNLLKYSLLLL 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K + V L + +G+ ++ CV G L++ SP GG +C +
Sbjct: 124 EKGSVNNDLLAVLFNLKFVTFMGYMPEVDHCVSCGKKDKLVYFSPAKGGVLCNNCKSAVD 183
Query: 181 EKML 184
+
Sbjct: 184 DIFY 187
>gi|118467581|ref|YP_888763.1| DNA repair protein RecO [Mycobacterium smegmatis str. MC2 155]
gi|166221898|sp|A0R0S5|RECO_MYCS2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118168868|gb|ABK69764.1| DNA repair protein RecO [Mycobacterium smegmatis str. MC2 155]
Length = 280
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 5/205 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNI 116
++ + + + + R E P +L+ +
Sbjct: 61 LHPGRNLDIVTQVQAIDAFAADIVSDYGRYTTACAMLETAERLAGEERAPMPDLHRLTVA 120
Query: 117 FLNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + L + G+ LT+C +GG+VC
Sbjct: 121 ALRAIADGRRARELVLDSYLLRAMAIAGWAPALTECARCAAPGPHRAFHVAAGGSVCVHC 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDAD 200
+ L D +
Sbjct: 181 RPSGSSTPPQAVLELMSALHDGDWE 205
>gi|23336019|ref|ZP_00121248.1| COG1381: Recombinational DNA repair protein (RecF pathway)
[Bifidobacterium longum DJO10A]
gi|23464726|ref|NP_695329.1| DNA repair protein RecO [Bifidobacterium longum NCC2705]
gi|189438981|ref|YP_001954062.1| DNA repair protein RecO [Bifidobacterium longum DJO10A]
gi|312132421|ref|YP_003999760.1| reco [Bifidobacterium longum subsp. longum BBMN68]
gi|322689574|ref|YP_004209308.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
157F]
gi|42559479|sp|Q8G7Y4|RECO_BIFLO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238692037|sp|B3DQ65|RECO_BIFLD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|23325293|gb|AAN23965.1| hypothetical protein BL0100 [Bifidobacterium longum NCC2705]
gi|189427416|gb|ACD97564.1| Recombinational DNA repair protein [Bifidobacterium longum DJO10A]
gi|291516146|emb|CBK69762.1| DNA replication and repair protein RecO [Bifidobacterium longum
subsp. longum F8]
gi|311772908|gb|ADQ02396.1| RecO [Bifidobacterium longum subsp. longum BBMN68]
gi|320460910|dbj|BAJ71530.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
157F]
Length = 239
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V
Sbjct: 4 YRDEGVVLRTSKLGEADRIITILTRGHGKIRAVAKGVRRTKSRFGARLEPFMRVDVLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ V + + + + + Y +L LN
Sbjct: 64 GRSLDVVSQAEAVAAYGAPIAADYAAYEAANVIVETIDKIASTEHEQLPNQYRLLIGALN 123
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
S + I + L G+ L CVV G +
Sbjct: 124 ALAKQSHAPQAIGDSYVMRALALAGWTPRLGTCVVCGKAE 163
>gi|169351080|ref|ZP_02868018.1| hypothetical protein CLOSPI_01859 [Clostridium spiroforme DSM 1552]
gi|169292142|gb|EDS74275.1| hypothetical protein CLOSPI_01859 [Clostridium spiroforme DSM 1552]
Length = 250
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 77/198 (38%), Gaps = 1/198 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQ 64
+ ++L + Y E ++++ + T+ YG+ R + + + + +
Sbjct: 12 EGLVLKNKPYKESDMLVWIYTKTYGKMALIARGVKKMKSKNAPACQTISLGEYLFIPRKG 71
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ V++ L Y I +++++ + +P E Y+ L + L
Sbjct: 72 LSTLIKGSVIDYFVHIKEDIELEAYASYFIEYVYKYILDNDPDEECYNNLLLALKYLNSG 131
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+++ +LK G L++ +C V G + + +S SGG VC+ Y ++
Sbjct: 132 YDPRLVYLLFNAYILKATGCALEVEQCSVCGDSSHIAGISISSGGFVCKECLGMYDMRLS 191
Query: 185 VLPSFLWKEEQTIDADSL 202
+ ++ +++
Sbjct: 192 IEVLKGFRYINKCSLENI 209
>gi|239620813|ref|ZP_04663844.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239516389|gb|EEQ56256.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 249
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V
Sbjct: 14 YRDEGVVLRTSKLGEADRIITILTRGHGKIRAVAKGVRRTKSRFGARLEPFMRVDVLIAE 73
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ V + + + + + Y +L LN
Sbjct: 74 GRSLDVVSQAEAVAAYGAPIAADYAAYEAANVIVETIDKIASTEHEQLPNQYRLLIGALN 133
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
S + I + L G+ L CVV G +
Sbjct: 134 ALAKQSHAPQAIGDSYVMRALALAGWTPRLGTCVVCGKAE 173
>gi|324998272|ref|ZP_08119384.1| DNA repair protein RecO [Pseudonocardia sp. P1]
Length = 266
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 68/183 (37%), Gaps = 6/183 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D ++L V+ GE + I+ ++T+Q G+ + + R + L+ N V V
Sbjct: 5 YRDTGVVLRVQKLGEADRIVTMLTKQRGKIRVVAKGVRRTRSRWGARLEPFNHVDVQ-CY 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + +++ +++ +I+ L E L L +
Sbjct: 64 TGRTLDVVTQAQTVDAFAPAVVADWSAYSCGCAILETADRLVSEEGEPALRVYLLLLGAT 123
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + + ++ LL+ + G+ L++C + GG VC
Sbjct: 124 RALADGVREPALVLDAFLLRAMSHAGWAPSLSECARCATPGPHRAFTVAGGGMVCPRCRP 183
Query: 178 PYA 180
P +
Sbjct: 184 PGS 186
>gi|227495129|ref|ZP_03925445.1| DNA repair protein RecO [Actinomyces coleocanis DSM 15436]
gi|226831581|gb|EEH63964.1| DNA repair protein RecO [Actinomyces coleocanis DSM 15436]
Length = 244
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 4/201 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+ I+L GE + I+ ++T +G + + + L+ +V
Sbjct: 5 YRDEGIVLRTHKLGEADRIITLLTHHHGVKRVVAKGVRRTTSKFGSRLEPFTVVDAQIHI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + + ++ +V L E + ++Y +L L+
Sbjct: 65 GRSLDVLNQVES-IRQYGLQIAQDYDKYMRASVLVETAERLSEDDASPQMYLLLLGALHA 123
Query: 121 HKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + L + G+ C + G + +SGGAVC P
Sbjct: 124 LATGRYPADLVMNSFLLRAMALSGWAPSFWDCALCGANGPSQYFHLQSGGAVCLECRPPG 183
Query: 180 AEKMLVLPSFLWKEEQTIDAD 200
+ L E + D +
Sbjct: 184 SAAPSAEAMRLLGELLSGDWE 204
>gi|28378609|ref|NP_785501.1| DNA repair protein RecO [Lactobacillus plantarum WCFS1]
gi|254556824|ref|YP_003063241.1| DNA repair protein RecO [Lactobacillus plantarum JDM1]
gi|38258515|sp|Q88VS1|RECO_LACPL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|28271445|emb|CAD64350.1| DNA repair protein RecO [Lactobacillus plantarum WCFS1]
gi|254045751|gb|ACT62544.1| DNA repair protein RecO [Lactobacillus plantarum JDM1]
Length = 258
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNW 58
M + I+L R Y E++++++ +T +YG+ + F+R + +M L +
Sbjct: 1 MVTNFNGILLFRRDYRERDMLIKFLTAEYGKKMFFIRGARRRGFKMAAELLPFTMGEYVG 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + ++ +L Y + + P+ +P Y L L
Sbjct: 61 DLRDQGLSYINSVKSVQYLEHISQDIALNAYATYVMNLMDVAFPDNQPVGRWYQQLTSAL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ +E+ LL+ G +L C V G + L S GG +C+
Sbjct: 121 QLIDQDVAPALVANVVEIQLLQPFGVAPELRWCTVCGRSDLPLDYSESYGGLLCQQH 177
>gi|227546836|ref|ZP_03976885.1| recombinational DNA repair protein (RecF pathway) [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|317481606|ref|ZP_07940642.1| recombination protein O [Bifidobacterium sp. 12_1_47BFAA]
gi|322691535|ref|YP_004221105.1| DNA repair protein RecO [Bifidobacterium longum subsp. longum JCM
1217]
gi|227212798|gb|EEI80679.1| recombinational DNA repair protein (RecF pathway) [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|316916966|gb|EFV38352.1| recombination protein O [Bifidobacterium sp. 12_1_47BFAA]
gi|320456391|dbj|BAJ67013.1| DNA repair protein RecO [Bifidobacterium longum subsp. longum JCM
1217]
Length = 239
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V
Sbjct: 4 YRDEGVVLRTSKLGEADRIITILTRGHGKIRAVAKGVRRTKSRFGARLEPFMRVDVLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ V + + + + + Y +L LN
Sbjct: 64 GRSLDVVSQAEAVAAYGAPIAADYAAYEAANVIVETIDKLASTEHEQLPNQYRLLIGALN 123
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
S + I + L G+ L CVV G +
Sbjct: 124 ALAKQSHAPQAIGDSYVMRALALAGWTPRLGTCVVCGKAE 163
>gi|290579547|ref|YP_003483939.1| putative DNA repair protein [Streptococcus mutans NN2025]
gi|254996446|dbj|BAH87047.1| putative DNA repair protein [Streptococcus mutans NN2025]
Length = 251
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 2/202 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ ++L R + E + ++++ T G+H+ FVR+ + ++ ++Q L +
Sbjct: 5 ETRGLVLYNRQFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNH 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ + Y + + + L+ L L
Sbjct: 65 GLSYIEDYKGVSLFKEINADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L G L+ CV S + G +C +
Sbjct: 125 GLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGLAFDFSHRYSGLLCPEHYEKDPYRS 184
Query: 184 LVLP--SFLWKEEQTIDADSLK 203
+ P +L + QT+ DSLK
Sbjct: 185 HLDPNVPYLLNQFQTLHFDSLK 206
>gi|170017071|ref|YP_001727990.1| DNA repair protein RecO [Leuconostoc citreum KM20]
gi|238688966|sp|B1MYE4|RECO_LEUCK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|169803928|gb|ACA82546.1| DNA repair protein RecO [Leuconostoc citreum KM20]
Length = 264
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 6/204 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN--WRSRL 62
IIL R Y + ++++ ++T G R + + LQ ++ +
Sbjct: 6 GIILSTRQYKDNDLLVRILTETGGLRTFLARGAKKPKSALGSALQPHAVLSFEGAFPKNN 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ ++ + + + Y + + E E Y+ + L
Sbjct: 66 QGLGYINDIQTIKIYQRLIDDIEVNAYAALIASLIDQTFEEGEQLTRWYNQFVLGLQKLD 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I E+ LL +G + + ++G + S K G + +
Sbjct: 126 EGLDPQIIANIFEIQLLVPLGVAPNWRQDPISGQSVGQFDYSEKYNGIISDKHYDLDDHR 185
Query: 183 MLVLPS--FLWKEEQTIDADSLKS 204
+++ F ++ ID +
Sbjct: 186 LMLDQKTVFYLRQFSIIDLRQINQ 209
>gi|304403963|ref|ZP_07385625.1| DNA repair protein RecO [Paenibacillus curdlanolyticus YK9]
gi|304346941|gb|EFM12773.1| DNA repair protein RecO [Paenibacillus curdlanolyticus YK9]
Length = 250
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M ++ +AII+ YGE N I+ ++T + +R + R + + Q +
Sbjct: 1 MLYRTNAIIIRSMDYGEGNKIVTLLTEGGSKAGVIIRGAKKARSRHGSLAQPFTYGEFVF 60
Query: 59 RSRLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
LG E++ES+ L Y + R L + E LY L
Sbjct: 61 FRGGGGGLGTLNHGEIMESNHLLRERLELAAYASYAAELADRTLQDDEADPFLYAQLKAC 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + E+ +L+ G+ L C+ + VS GG +CR
Sbjct: 121 FEAMQQDKDPQIVSHLFEMKVLQRAGYDPQLNACISCESEEGPFAVSAGGGGVLCRRC 178
>gi|308180765|ref|YP_003924893.1| DNA repair protein RecO [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308046256|gb|ADN98799.1| DNA repair protein RecO [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 258
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNW 58
M + I+L R Y E++++++ +T +YG+ + F+R + +M L +
Sbjct: 1 MVTNFNGILLFRRDYRERDMLIKFLTAEYGKKMFFIRGARRRGFKMAAELLPFTMGEYVG 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + ++ +L Y + + P+ +P Y L L
Sbjct: 61 DLRDQGLSYINSVKSVQYLEHISQDIALNAYATYVMNLMDVAFPDNQPVGRWYQQLTSAL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ +E+ LL+ G +L C V G + L S GG +C+
Sbjct: 121 QLIDQDVAPALVANVVEIQLLQPFGVAPELRWCTVCGRSDLPLDYSESYGGLLCQQH 177
>gi|606746|gb|AAB59995.1| unknown [Bacillus subtilis]
Length = 114
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + + I+L YGE N I+ ++TR++G+ R + + + + ++
Sbjct: 1 MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLM 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM 113
+ + + E++ S L Y + R E++P L++
Sbjct: 61 QKTSGLGTLQQGEMILSMRGIREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEF 114
>gi|332523261|ref|ZP_08399513.1| DNA repair protein RecO [Streptococcus porcinus str. Jelinkova 176]
gi|332314525|gb|EGJ27510.1| DNA repair protein RecO [Streptococcus porcinus str. Jelinkova 176]
Length = 257
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 77/203 (37%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ A++L ++Y E + ++++ T G+ + F+++ ++ ++Q + +
Sbjct: 5 ESYALVLYNKNYREDDKLVKLFTETAGKRMFFIKHASKSKLASVIQPLTIADFILKINEK 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++++ Y + + +P+ E +L+ L+ +
Sbjct: 65 GLSYIDDYNDVQTYPRINQDLYRLAYATYVMSLVDAAIPDNESDSQLFAFTRKTLDLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L+ G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQILERFGVRLNFHECVFCHRVGLPFDFSHKYSGPLCPNHLQEDTHRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L + Q + LK+
Sbjct: 185 HLDPNVLYLLDQFQNVQFSELKN 207
>gi|72161256|ref|YP_288913.1| DNA repair protein RecO [Thermobifida fusca YX]
gi|92087038|sp|Q47RM7|RECO_THEFY RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|71914988|gb|AAZ54890.1| Recombination protein O, RecO [Thermobifida fusca YX]
Length = 243
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 66/178 (37%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ I+L + GE + I+ ++TR+ G + + R + L+ + V +
Sbjct: 4 YRDEGIVLRTQDLGEADRIVTLLTRRTGLVRAVGKGVRRTRSRFGARLEPFTHIDVQLHA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + + + G+ + + + + L L ++
Sbjct: 64 GKSLDVVTQVDTLHAYGSVLVTDYPRYTAGVAMLETAEKVVSVEK-DPALRQFLLLWGGL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+++ G+ L +C GV + +GG VC
Sbjct: 123 RTLAEGAHDPRLVLDAYLLRSLAVAGYAPALEECAHCGVPGPHREFAVHAGGMVCSLC 180
>gi|319779262|ref|YP_004130175.1| DNA recombination and repair protein RecO [Taylorella equigenitalis
MCE9]
gi|317109286|gb|ADU92032.1| DNA recombination and repair protein RecO [Taylorella equigenitalis
MCE9]
Length = 205
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 6/146 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSR 61
+ A +L S+ + ++I+ V +R+YG G ++ + +PI + V+W
Sbjct: 10 EAKAFVLHSISWSDNSLIVNVFSREYGLIAGVAKSAKRPYSVLRPINAHFQPLLVSWSGS 69
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + R + + +P +L+D L
Sbjct: 70 GELKTITKVETDGFYCIPER----ALMSAWYLNELILRGVAKEDPHEKLFDCYEDALLGL 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLD 147
+ + + E L IG+GLD
Sbjct: 126 VSDTDPRIVLRRFEWQWLCEIGYGLD 151
>gi|73748418|ref|YP_307657.1| recombination protein RecO [Dehalococcoides sp. CBDB1]
gi|92087028|sp|Q3ZWX7|RECO_DEHSC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|73660134|emb|CAI82741.1| recombination protein RecO [Dehalococcoides sp. CBDB1]
Length = 253
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 5/177 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++ AII+ GE + IL ++T G GF ++ + + + L+ V+ +
Sbjct: 7 FKTKAIIVRKTKCGEADRILSLLTPDLGLIQGFAKSVRKTKSKLSGHLELLCYSEVSL-A 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + ++S S L + + F PE ++ +L L
Sbjct: 66 RGKAIDTITGSQTIQSFLNIRNSLQLSAMAFYACELAYHFSPEEAANPAMFQLLLSTLEE 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSV 175
S E+ LL + G+ +L +C + + SP+SGG +C +
Sbjct: 126 LDNGSQPELCLKYFEINLLASSGYKPELRECANCHKKLQATINYYSPESGGVICPNC 182
>gi|270307942|ref|YP_003330000.1| recombinational DNA repair protein (RecF pathway) [Dehalococcoides
sp. VS]
gi|270153834|gb|ACZ61672.1| recombinational DNA repair protein (RecF pathway) [Dehalococcoides
sp. VS]
Length = 262
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 3/157 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++ AI++ GE + IL ++T G GF ++ + + + L+ V+ +
Sbjct: 7 FKTRAIVVRKTKCGEADRILSLLTPDLGLIQGFAKSVRKTKSKLSGHLELLCYSEVSL-A 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + ++S S L + F PE ++ +L L
Sbjct: 66 RGKAIDTITGSQTIQSFLNIRNSLQLSAMAFYVCELAYHFSPEESANPSIFQLLLSTLEE 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
S EL LL+N G+ +L +C
Sbjct: 126 LDNESQAELCIKYFELHLLENSGYKPELRECANCHKK 162
>gi|220932085|ref|YP_002508993.1| DNA repair protein RecO [Halothermothrix orenii H 168]
gi|219993395|gb|ACL69998.1| DNA repair protein RecO [Halothermothrix orenii H 168]
Length = 258
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 8/212 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+ + I+L GE + I+ +TR G+ + + R ++ + V
Sbjct: 4 FNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVT-IY 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R R +V S + Y + + E + L+ +L +
Sbjct: 63 RGRSLDKINRIKVKYSFSPLREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSFHR 122
Query: 121 HKIPSVIGKIFVQIELM---LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
I + I +L +G +L+ CV G + ++ S
Sbjct: 123 LLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCGQQNNPGSINIFSIERGGLLCHN 182
Query: 178 PYAEKM--LVLPSFLWKEEQTIDADSLKSAFQ 207
+ M + + E I A+ + S +
Sbjct: 183 CSSNHMDGMGGVQKISGESLRIMANIIDSGLK 214
>gi|147669198|ref|YP_001214016.1| DNA repair protein RecO [Dehalococcoides sp. BAV1]
gi|289432466|ref|YP_003462339.1| DNA repair protein RecO [Dehalococcoides sp. GT]
gi|189039655|sp|A5FRN7|RECO_DEHSB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146270146|gb|ABQ17138.1| DNA replication and repair protein RecO [Dehalococcoides sp. BAV1]
gi|288946186|gb|ADC73883.1| DNA repair protein RecO [Dehalococcoides sp. GT]
Length = 253
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 5/177 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++ AII+ GE + IL ++T G GF ++ + ++ L+ V+ +
Sbjct: 7 FKTKAIIVRKTKCGEADRILSLLTPDLGLIQGFAKSVRKTTSKLSGHLELLCYSEVSL-A 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + ++S S L + + F PE L+ +L L
Sbjct: 66 RGKAIDTITGSQTIQSFLNIRNSLQLSAMAFYACELAYHFSPEEAANPALFQLLLSTLEE 125
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSV 175
S E+ LL + G+ +L +C + + SP+SGG +C +
Sbjct: 126 LDNGSQPELCLKYFEINLLASSGYKPELRECANCHKKLQATINYYSPESGGVICPNC 182
>gi|148655450|ref|YP_001275655.1| DNA repair protein RecO [Roseiflexus sp. RS-1]
gi|172048082|sp|A5USV2|RECO_ROSS1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148567560|gb|ABQ89705.1| DNA repair protein RecO [Roseiflexus sp. RS-1]
Length = 283
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 6/179 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++ +AII+ GE + ++ ++T GR R + R+ ++ +
Sbjct: 6 YRTEAIIIRRSDAGEADRLVTILTP-LGRQRVVARGARKLHSRLAGHIELFTHTMLMLAI 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + + + R + E + +L L
Sbjct: 65 GRNLHIVTQSSPLDRFER-LRTDLERIGAAYYAAELVDRLVEEEAENKRAFSILLGTLRA 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSVGL 177
+ I EL LL +G+ L +C G +T+ SP +GGA+C
Sbjct: 124 LNAGAAIDLTLRAYELHLLDALGYRPQLYECAACGAVLTEATNRFSPVTGGALCPDCAG 182
>gi|167755647|ref|ZP_02427774.1| hypothetical protein CLORAM_01162 [Clostridium ramosum DSM 1402]
gi|167704586|gb|EDS19165.1| hypothetical protein CLORAM_01162 [Clostridium ramosum DSM 1402]
Length = 248
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 7/188 (3%)
Query: 1 MYWQDD----AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLV 54
M + ++L + Y E +++L + T YG+ + + + P Q L
Sbjct: 1 MIINGEENITGLVLKNKPYKENDMLLWIYTHDYGKLALIAKGVKKLKSKNAPSCQTITLS 60
Query: 55 RVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
+ R + +E L Y +++F + +P +Y+ L
Sbjct: 61 EFTFIPRSGLSNLIKGAP-VEYFRYIKEDIELEAYASYFCEFVYKFTKDNDPDETIYNTL 119
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ L + +++ +++ G L++ +CV G + VS SGG VC+
Sbjct: 120 LLALRSLQTGYNPKLVYLLFNAFIMEKTGSSLEVDQCVSCGRLDHISGVSIHSGGFVCQE 179
Query: 175 VGLPYAEK 182
Y +K
Sbjct: 180 CIGMYDQK 187
>gi|229817202|ref|ZP_04447484.1| hypothetical protein BIFANG_02462 [Bifidobacterium angulatum DSM
20098]
gi|229784991|gb|EEP21105.1| hypothetical protein BIFANG_02462 [Bifidobacterium angulatum DSM
20098]
Length = 240
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 7/205 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ D+ ++L GE + I+ ++TR +G+ + + + + L+ V V +
Sbjct: 4 YHDEGVVLRTAKLGEADRIITLLTRDHGKVRAVAKGVRRAKSRFGGRLEPFMRVDV-LIA 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL---PEREPCLELYDMLNIF 117
+ E + ++ + + I L + +
Sbjct: 63 EGRTLDTISQVESISAYAGPICADYDSYTAANVIAETADKLASAENERVTAQYRLLAGAL 122
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
I + L G+ L C+V + + S GGA+C +
Sbjct: 123 NALATHAHGPELISASYVMRALSLAGWTPRLASCMVCDSRE-ITHFSVPDGGALCATHHT 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
P +E + + + D L
Sbjct: 182 PRSEPIPLPVRAELEALMNGDWREL 206
>gi|183983652|ref|YP_001851943.1| recombination protein O RecO [Mycobacterium marinum M]
gi|238690926|sp|B2HLB2|RECO_MYCMM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|183176978|gb|ACC42088.1| recombination protein O RecO [Mycobacterium marinum M]
Length = 265
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGSRLEPFAHIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ A +++ +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSIDAFAADIVNDYGRYTCGCAMLETAERLAGEERAPAPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 GALRAVADGSRPRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHIAAGGSVCPH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|291456391|ref|ZP_06595781.1| DNA repair protein RecO [Bifidobacterium breve DSM 20213]
gi|291381668|gb|EFE89186.1| DNA repair protein RecO [Bifidobacterium breve DSM 20213]
Length = 240
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 5/207 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR++G+ + + + + L+ V +
Sbjct: 5 YRDEGVVLRTAKLGEADRIITLLTREHGKIRAVAKGVRRTKSRFGARLEPFMRVDLLIAE 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ V A + + + + + + Y +L LN
Sbjct: 65 GRSLDVVSQAESVASYGAAIAADYAAYEAANVIVETIDKLVSTEHEQLPNQYRLLIGALN 124
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K I + L G+ L CVV G + + S SGG +C +
Sbjct: 125 ALAKHAHASQTISESYVMRALALAGWTPRLATCVVCGKPE-RRYFSIASGGVMCEADHTT 183
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSA 205
A ++ L D L +A
Sbjct: 184 DARRIAPLVLSQLDALIRGDWSVLDNA 210
>gi|237734395|ref|ZP_04564876.1| recombination protein O [Mollicutes bacterium D7]
gi|229382625|gb|EEO32716.1| recombination protein O [Coprobacillus sp. D7]
Length = 253
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 7/188 (3%)
Query: 1 MYWQDD----AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLV 54
M + ++L + Y E +++L + T YG+ + + + P Q L
Sbjct: 6 MIINGEENITGLVLKNKPYKENDMLLWIYTHDYGKLALIAKGVKKLKSKNAPSCQTITLS 65
Query: 55 RVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
+ R + +E L Y +++F + +P +Y+ L
Sbjct: 66 EFTFIPRSGLSNLIKGAP-VEYFRYIKEDIELEAYASYFCEFVYKFTKDNDPDETIYNTL 124
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ L + +++ +++ G L++ +CV G + VS SGG VC+
Sbjct: 125 LLALRSLQTGYNPKLVYLLFNAFIMEKTGSSLEVDQCVSCGRLDHISGVSIHSGGFVCQE 184
Query: 175 VGLPYAEK 182
Y +K
Sbjct: 185 CIGMYDQK 192
>gi|255292115|dbj|BAH90592.1| DNA repair protein RecO [uncultured bacterium]
gi|255292993|dbj|BAH90090.1| DNA repair protein RecO [uncultured bacterium]
Length = 266
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 8/186 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ ++R++G+ R + S + L+ V V + +
Sbjct: 24 YRDEAVVLRTHKLGEADRIITFLSRRHGKVRAAARGVRRTSSKFGARLEPFTHVDVQFAN 83
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ + + S + G + R + E + + +L L
Sbjct: 84 GRSLEIVAQVESIRAFGEPLSRDFSRWTAGQAMLETADRLVTEEGQPAVQQFLLLVGALR 143
Query: 120 CHK--IPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ ++ LL+++ G+ T C G SP +GG VC
Sbjct: 144 VLNEGTTDGPRETSTILDSYLLRSLAVAGYAPTFTDCAKCGSPGPHRAFSPAAGGVVCGV 203
Query: 175 VGLPYA 180
P +
Sbjct: 204 CRPPGS 209
>gi|78189922|ref|YP_380260.1| recombination protein O, RecO [Chlorobium chlorochromatii CaD3]
gi|78172121|gb|ABB29217.1| DNA replication and repair protein RecO [Chlorobium chlorochromatii
CaD3]
Length = 283
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 4/158 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ A++L ++ +++ I + +R +GR ++ ++ + + + AGN++ V
Sbjct: 24 IVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKGARNPKNRLCGLFSAGNILDVVIY 83
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFL 118
+ + L L + L I+ + + +L+ +L L
Sbjct: 84 RKSGRELQLASDATLVASPLMAEPDMERFAALYRIIDVVKQATAEHEHNPQLFTLLAATL 143
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ S + L L+ +GF L +CV +
Sbjct: 144 QSLYQQGSNNLLLTAWFLLRLVSLLGFQPSLRQCVFSN 181
>gi|224369905|ref|YP_002604069.1| RecO [Desulfobacterium autotrophicum HRM2]
gi|223692622|gb|ACN15905.1| RecO [Desulfobacterium autotrophicum HRM2]
Length = 258
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 10/213 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAG--NLVRVNW 58
+ D I+L YG+ ++I+ T GR +N + R L+ + W
Sbjct: 4 FSTDGIVLKRIEYGDNDLIVTFFTTAMGRVSVIAKNAKKSVKRFAGALEPFSVMNLECTW 63
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R ++ + Y + + + E + ELY++L L
Sbjct: 64 PRRKNALPLLNAVDLSYPFAKIRTHTVKTGYACYWLELINSSIEEGKKQGELYELLFFVL 123
Query: 119 NCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-----GVTQDLLWVSPKSGGAVC 172
+ + ++ + G DLT C G+ Q + G VC
Sbjct: 124 QALDADTMDKEILSLLFQIRFMNLSGLCPDLTSCGTCSTPLDGMAQHRIIFDFAQGCLVC 183
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ + K+ I+ L+ A
Sbjct: 184 DRCAKGAVRHGITVTKGTLKQLSWINNTDLRRA 216
>gi|260220753|emb|CBA28633.1| DNA repair protein recO [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 249
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 7/150 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A +L + E ++ILEV TR YGR + + +PIL + V +
Sbjct: 8 DEPAFVLHRYDWSESSLILEVFTRHYGRVALVAKGVKKPTSSFRPILLPLQPLHVAF--- 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L G L L +P EL+D+ +
Sbjct: 65 GGDAEIRTLRSAEWQGGHVMPTGDALLSGYYLNELLITLLARDDPHAELFDIYAQVVRVI 124
Query: 122 KIPSVI--GKIFVQIELMLLKNIGFGLDLT 149
EL+LL+ +GF L
Sbjct: 125 SSEHGEVLQAALRTFELLLLREVGFLPQLD 154
>gi|313889561|ref|ZP_07823206.1| DNA repair protein RecO [Streptococcus pseudoporcinus SPIN 20026]
gi|313122070|gb|EFR45164.1| DNA repair protein RecO [Streptococcus pseudoporcinus SPIN 20026]
Length = 257
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 78/203 (38%), Gaps = 2/203 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ A++L ++Y E + ++++ T G+ + F+++ ++ ++Q + +
Sbjct: 5 ESYALVLYNKNYREDDKLVKLFTETAGKRMFFIKHASKSKLASVIQPLTIADFMLKINEK 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++++ Y + + +P+ EP +L+ L+ +
Sbjct: 65 GLSYIDDYNDVQTYPRINQDLYRLAYATYVMSLVDAAIPDNEPDSQLFAFARKTLDLMEE 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ +L+ G L+ +CV S K G +C + +
Sbjct: 125 GLDYEILTNIFEIQILERFGVRLNFHECVFCHRVGLPFDFSHKYSGPLCPNHLYEDTHRS 184
Query: 184 LVLPS--FLWKEEQTIDADSLKS 204
+ P+ +L + Q + LK+
Sbjct: 185 HLDPNVLYLLDQFQNVQFSELKN 207
>gi|298346620|ref|YP_003719307.1| DNA repair protein RecO [Mobiluncus curtisii ATCC 43063]
gi|298236681|gb|ADI67813.1| DNA repair protein RecO [Mobiluncus curtisii ATCC 43063]
Length = 243
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 5/205 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++T ++G R + R+ L+ V +
Sbjct: 1 MRTFRDAAVVLRTQDLGEADRIVTLLTEKHGLLRCVGRGVRKTTSRLGARLEPFGTVDIQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R + + E+L + L + +V L E E Y L
Sbjct: 61 IRWGKSNLHHIEQVEILAPYGRSLANDYARYTAANLMVETLERLTEDSWTNERYYHLTNG 120
Query: 118 LNCHKIPSVIGK--IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I L L+ G+ C G + +P GGA+C +
Sbjct: 121 ALHALATGRHEPSLILDSYLLRLMSLAGWAASCWDCASCGARGPHEYFNPSGGGAMCVNC 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDAD 200
L A + L T D
Sbjct: 181 KLTGARPVDSETMRLLAALATGDWQ 205
>gi|213691677|ref|YP_002322263.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|254790513|sp|B7GQ05|RECO_BIFLI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|213523138|gb|ACJ51885.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320457768|dbj|BAJ68389.1| DNA repair protein RecO [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 239
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 4/157 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L E + I+ V+TR +G+ + + + + L+ V +
Sbjct: 4 YRDEGVVLRTSKLAEADRIITVLTRDHGKIRAVAKGVRRTKSRFGARLEPFMRVDLLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLN 119
+ + + A + + + + + + + + Y +L LN
Sbjct: 64 GRSLDTVSQAESIAAYGAAIVGDYAAYEAANVIVETIDKLVGTERERMTDQYRLLIGALN 123
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + I + L G+ L CVV G
Sbjct: 124 ALAKRAHAPQAIGCSYVMRALALAGWTPRLGTCVVCG 160
>gi|50955078|ref|YP_062366.1| DNA repair protein RecO [Leifsonia xyli subsp. xyli str. CTCB07]
gi|61214918|sp|Q6AED5|RECO_LEIXX RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|50951560|gb|AAT89261.1| single-stranded DNA binding protein [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 249
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 4/183 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ +++RQ+G+ + + R L+ + V
Sbjct: 4 YRDEAVVLRTHKLGEADRIVTMLSRQHGKIRAVAKGVRRTASRFGSRLEPFMVADVQLYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + ++ A + ++V L + E L+ Y +L L
Sbjct: 64 GRSLDVVTQAET-IGAYGAAIAEDYASYTAANAMVEAADRLTDAEASLQQYLLLVGALRS 122
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L +L G+ C G V + GG VC
Sbjct: 123 LSRGEHGPGLTLDSYLLRVLSLAGWAPSFQDCSRCGRPGPHRQVVVQLGGVVCPDCAPQG 182
Query: 180 AEK 182
A +
Sbjct: 183 ASR 185
>gi|213965771|ref|ZP_03393963.1| DNA repair protein RecO [Corynebacterium amycolatum SK46]
gi|213951530|gb|EEB62920.1| DNA repair protein RecO [Corynebacterium amycolatum SK46]
Length = 249
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 6/184 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D A+++ GE + I+ + TR +G G + + + + L V VN
Sbjct: 5 YRDRALVVRRYDLGEADRIIVLFTRDHGLVRGVAKGVRRAKSRFGSRLSPFVDVNVNIYP 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + + A L+ +++ + + E +
Sbjct: 65 RRGLST-IAGADTVRTWAAPLVDDYARYTCACAVLDVAERIVGEEQVPAPELWDLATQSL 123
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
I + + + + +L+ + G+ L +C G SP GGAVC +
Sbjct: 124 DDIAARRHRPDLLLTSYILRAMAQAGWQPSLFECAGCGKAGPHHAFSPALGGAVCTNCRP 183
Query: 178 PYAE 181
P A+
Sbjct: 184 PGAD 187
>gi|68535681|ref|YP_250386.1| DNA repair protein RecO [Corynebacterium jeikeium K411]
gi|68263280|emb|CAI36768.1| DNA repair protein RecO [Corynebacterium jeikeium K411]
Length = 249
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 3/179 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+A +L GE ++IL ++TR G + + R + L + V V
Sbjct: 9 FRDEAFVLRTYKLGEADLILVLLTRDNGLIRAVAKGIRKTRSRFGARLDRFSRVDVQIYP 68
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V + F G + F E ++ +L+ L
Sbjct: 69 GRSLANVTDAATVATYASPIVADVDRFYAGAAMLEMAQVFAAEPSSAHSIFFLLDAALQQ 128
Query: 121 HKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
++ + + L L+ G+ L C G P +GGAVC + P
Sbjct: 129 LTTSALPPVSVADEFVLHGLEVAGWEPSLVDCAQCGKRGPHRAFHPGAGGAVCVTCRPP 187
>gi|194333040|ref|YP_002014900.1| DNA repair protein RecO [Prosthecochloris aestuarii DSM 271]
gi|238693299|sp|B4S3Q7|RECO_PROA2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|194310858|gb|ACF45253.1| DNA repair protein RecO [Prosthecochloris aestuarii DSM 271]
Length = 264
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + +IL + +++ I V T +G+ ++ ++ + + + GN+V +
Sbjct: 1 MLVKTRGVILKEIKFRDQSKICPVFTEHFGKISVILKGVRNPKNKLSGVFSTGNMVELVI 60
Query: 59 RSR-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +L+S + F Q I L + EP L+ L
Sbjct: 61 YKKQNRDLHLVSDALLLQSPMSARPDMERFTTIYQLIETLKQVTGSEEPHPVLFRFLAAT 120
Query: 118 LNCHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTG 155
+ P ++ + L+ +GF +L +CV++G
Sbjct: 121 IEELCKPERDYQLVLAWFLIRLVTVLGFEPELEQCVISG 159
>gi|317401888|gb|EFV82495.1| hypothetical protein HMPREF0005_00527 [Achromobacter xylosoxidans
C54]
Length = 202
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 6/144 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L ++ E ++I++ +R +G + + +P+L A + ++W
Sbjct: 19 PGYMLHATAWRETSLIVQTFSRDHGCVAMVAKGAKRPYSVLRPVLSAFQPLLLSWTGNGE 78
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E + L+ + + L R LP + L+D ++ L
Sbjct: 79 VKT----LTRAEIMGVRALNGTALMSAWYMNELLLRLLPREDAHPLLFDAYDMALQQLSG 134
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD 147
+ + E LL+ G+G+D
Sbjct: 135 GTRAAGALRRFEWTLLRETGYGVD 158
>gi|85374495|ref|YP_458557.1| hypothetical protein ELI_08340 [Erythrobacter litoralis HTCC2594]
gi|84787578|gb|ABC63760.1| hypothetical protein ELI_08340 [Erythrobacter litoralis HTCC2594]
Length = 200
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ AI+L R +GE +I ++T ++G G+V G+ +++P++ GNLV + R++
Sbjct: 4 NLRAPAILLAARPHGETAVIARLLTEEFGMVAGYVAGGRGRQLRPVVIPGNLVELELRAK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L + E++ES L + LPER LY L L+
Sbjct: 64 SDSQLPFAKLELVESRGPWLSEPLPAAAIQWATALTATALPERNAYPNLYSALVALLDAV 123
Query: 122 KIPSV---IGKIFVQIELMLLKNIGFG 145
+ E +LL+ +G+G
Sbjct: 124 CQAPSARGWAPALLSYEALLLRELGYG 150
>gi|320105079|ref|YP_004180670.1| DNA repair protein RecO [Isosphaera pallida ATCC 43644]
gi|319752361|gb|ADV64121.1| DNA repair protein RecO [Isosphaera pallida ATCC 43644]
Length = 257
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ A+++ E + +L V +R+ G+ + + + L ++ + +
Sbjct: 5 RTLALVIRSTEVFETSKVLTVFSRELGKVSAIAKGARRLKSPFHSALDLLSVCDMVLIHK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
L LE L + LY + L L E P +L++ + L
Sbjct: 65 GTDALDLVTEATLEERFDALKTDLEALYAGYYVAELLDGLTEHHVPHPKLFEAARVTLRH 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ ++ EL LL+ +G L CV G
Sbjct: 125 LADSRLRRHRVLRFELALLRELGHAPALENCVHCG 159
>gi|289642684|ref|ZP_06474824.1| DNA repair protein RecO [Frankia symbiont of Datisca glomerata]
gi|289507514|gb|EFD28473.1| DNA repair protein RecO [Frankia symbiont of Datisca glomerata]
Length = 243
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L E + I+ V+TR+ GR + + S R L+ G V +
Sbjct: 4 YRDEGVVLRTTPLAEADRIITVLTRRTGRIRAVAKGVRRTSSRFGARLEPGTYVDLQLYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++L + A + S ++ L E + L +
Sbjct: 64 GRSLDT-VTQADILSPYGAVIASDYPRHTAAAVMLETAERLTSEERQPAMRLFLLLVGGL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+G+ L C G S +GG VC
Sbjct: 123 RTLAQGERAPSLVLDAFLLRALTIAGYGMALADCAHCGDPGPHHAFSVPAGGVVCPECRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
A M L + T D D
Sbjct: 183 HGAVSMSPAAVKLLSDLLTGDWD 205
>gi|310828429|ref|YP_003960786.1| DNA repair protein RecO [Eubacterium limosum KIST612]
gi|308740163|gb|ADO37823.1| DNA repair protein RecO [Eubacterium limosum KIST612]
Length = 248
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 56/175 (32%), Gaps = 3/175 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR-L 62
+ I++ + + E++ I+ + T + G+ + + +R + +
Sbjct: 5 KTKGIVIREQPFQEQDKIITLFTEEEGKIKAIAKGVRRNRSPLVAATQLFAYSEFVYYPG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH- 121
+ +++S + L F + + ++N L
Sbjct: 65 KNFANINQASLIQSFYPLRNDLMKMSLASYVLELLDAFYDYYQGNKAVLRLVNFILFYLS 124
Query: 122 -KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++L L + G C + G T+ L S ++ G +C +
Sbjct: 125 EDKSQSNEALVAALQLKLTEVHGIRPVFDTCALCGSTEHLTHFSIENNGVLCENC 179
>gi|33597817|ref|NP_885460.1| hypothetical protein BPP3293 [Bordetella parapertussis 12822]
gi|33602719|ref|NP_890279.1| hypothetical protein BB3744 [Bordetella bronchiseptica RB50]
gi|33574246|emb|CAE38578.1| hypothetical protein BPP3293 [Bordetella parapertussis]
gi|33577161|emb|CAE35718.1| hypothetical protein BB3744 [Bordetella bronchiseptica RB50]
Length = 195
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 6/144 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L ++ E ++I++ +R+YG + + +P+L A + ++W
Sbjct: 12 PGYMLHATAWRETSLIVQAFSREYGCIALVAKGAKRPYSVLRPVLSAFQPLLLSWSGAGE 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E + L + L R LP + LYD + L
Sbjct: 72 VKTMTRA----EIAGVRPLGGPALMSAWYMNELLLRLLPREDAHPVLYDAYDTALTQLSA 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD 147
S + E +LL+ G+GLD
Sbjct: 128 GSRAAGALRRFEWILLRETGYGLD 151
>gi|120609886|ref|YP_969564.1| DNA repair protein RecO [Acidovorax citrulli AAC00-1]
gi|166221879|sp|A1TLF2|RECO_ACIAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|120588350|gb|ABM31790.1| DNA repair protein RecO [Acidovorax citrulli AAC00-1]
Length = 260
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)
Query: 2 YWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
D+ A +L + E ++IL+V TR +GR R + +P+L +R+ +
Sbjct: 5 RISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPLRITY 64
Query: 59 RSRLAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + L GL L R L + L+D
Sbjct: 65 TLNGEGREEVHGLKGAEWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDAYAGV 124
Query: 118 LNCHKIPS 125
+
Sbjct: 125 VRVLASEH 132
>gi|78187879|ref|YP_375922.1| recombination protein O, RecO [Chlorobium luteolum DSM 273]
gi|123582452|sp|Q3B1A2|RECO_PELLD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78167781|gb|ABB24879.1| DNA replication and repair protein RecO [Chlorobium luteolum DSM
273]
Length = 264
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L Y +++ IL + TR++GR ++ G++ + + I AGN++ +
Sbjct: 1 MIVKTRAVVLREIKYRDQSKILTLYTREFGRLACILKGGRNPKNRLSGIFSAGNVLDIVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIF 117
+ + + L S L I+ L R L+ +L
Sbjct: 61 YRKPEREVQLISDGSLVSCPMVPGPDIERFGVLYRIIDLVRLTTEHDGRSPRLFSLLEST 120
Query: 118 LNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L V ++ L + GF +L +CV +G
Sbjct: 121 LLELNRERVAYRTLYAWFLLRFISLQGFAPELCRCVFSG 159
>gi|323703323|ref|ZP_08114973.1| DNA repair protein RecO [Desulfotomaculum nigrificans DSM 574]
gi|323531686|gb|EGB21575.1| DNA repair protein RecO [Desulfotomaculum nigrificans DSM 574]
Length = 256
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 4/152 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSRLA 63
DAIIL R E + IL + + Q G+ + + +Q + R
Sbjct: 7 DAIILKSRDMREADKILTLYSIQQGKQRVVAHGAAKPKSRKRGAVQPFCYSSLMLH-RGK 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + E+ ES FL E EP ++ +L L+
Sbjct: 66 ELDSVSQAELKESFPELRTDLDRLAGAAYMAELADGFLGEGEPNQAIFGLLLATLHLMAK 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ E L+ GF +L C G
Sbjct: 126 GDTQLALRA-FEAKLMWLTGFKPELDHCTGCG 156
>gi|237807625|ref|YP_002892065.1| DNA repair protein RecO [Tolumonas auensis DSM 9187]
gi|259563685|sp|C4LC00|RECO_TOLAT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|237499886|gb|ACQ92479.1| DNA repair protein RecO [Tolumonas auensis DSM 9187]
Length = 239
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
A +L R Y E + ++++ G+ + +S R + +LQ + +++ +
Sbjct: 7 SPAFVLHTRPYRETSQLVDLFVASMGKVSVVAKGSRSPRSSVKGLLQPFLPLHIHYGGKS 66
Query: 63 AQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ LE+ ++ L L L+ L L+ L
Sbjct: 67 SLKT----LLQLEARSPQVALQGERLFSALYLNELLYYLLEPDTEYPGLFSGYFQTLLAL 122
Query: 122 -KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
++ + Q EL+LL+ +G+G D + + D A + L
Sbjct: 123 ADQQQLVSPLLRQFELLLLQQLGYGADFCYAADSCLPIDPACYYRYEPEAGFITTALRDH 182
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLREN---FLGK 235
E+ D L +A + + + A + + RE F+ +
Sbjct: 183 AFFSGREIIGIAEQAFSDEYILAAARRFS-----RQAFAALLGNRPLKSRELYSAFIAR 236
>gi|161486576|ref|NP_787413.2| DNA repair protein RecO [Tropheryma whipplei str. Twist]
gi|161501890|ref|NP_789416.2| DNA repair protein RecO [Tropheryma whipplei TW08/27]
Length = 241
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 5/210 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+++D AI+L + GE + I+ + TR G + + + + L+ ++ +
Sbjct: 4 HYRDRAIVLRTKPLGEADRIITLFTRSNGTSDFVAKGIRRPKSRFGSSLEPFTVIDA-FL 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
G + E+L S+ ++L+ S+ I R L ++ +D+L+ +
Sbjct: 63 YIGRGMDGVSQAEILASYGSRLVKSTESYIAANVIAETGRRLGIAGGSVQQFDLLHGAFS 122
Query: 120 CHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL- 177
I L + G+ L C + + +GG VC S
Sbjct: 123 ALSRGISSPEAICSSYLLRSMSAAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCSEH 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
P L +E + + +
Sbjct: 183 PVVNNKLCEYLLALREGDWPYINESDESLR 212
>gi|307545608|ref|YP_003898087.1| DNA repair protein RecO [Halomonas elongata DSM 2581]
gi|307217632|emb|CBV42902.1| DNA repair protein RecO [Halomonas elongata DSM 2581]
Length = 233
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRL 62
+ A +L R Y E + ++E++T +GR R Q R++ +LQ + V W
Sbjct: 4 EPAYLLHKRPYRETSALVELLTFHHGRVRAVARGVQRPGSRLRAVLQPFAPLHVTWSGSG 63
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
A +L L GL + L R LP P +++ L+
Sbjct: 64 DLKRLGLMESR---GSAAMLVGEGLLCGLYANELLARLLPVEMPVDDVFAFYAAALDAL 119
>gi|304389667|ref|ZP_07371627.1| recombination protein O [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315656965|ref|ZP_07909850.1| DNA repair protein RecO [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|304327071|gb|EFL94309.1| recombination protein O [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315492357|gb|EFU81963.1| DNA repair protein RecO [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 243
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 5/205 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++T ++G R + R+ L+ V +
Sbjct: 1 MRTFRDAAVVLRTQDLGEADRIVTLLTEKHGLLRCVGRGVRKTTSRLGARLEPFGTVDIQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNI 116
R + + E+L + L + +V L E Y +
Sbjct: 61 IRWGKSNLHHIEQVEILAPYGRSLANDYARYTAANLMVETLERLTEDSWTNERYYHLTIG 120
Query: 117 FLNCHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L+ I L L+ G+ C G + +P GGA+C +
Sbjct: 121 ALHALATGRHEPSLILDSYLLRLMSLAGWAASCWDCASCGARGPHEYFNPSGGGAMCVNC 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDAD 200
L A + L T D
Sbjct: 181 KLTGARPVDSETMRLLAALATGDWQ 205
>gi|326316029|ref|YP_004233701.1| DNA repair protein RecO [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372865|gb|ADX45134.1| DNA repair protein RecO [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 260
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)
Query: 2 YWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
D+ A +L + E ++IL+V TR +GR + + +P+L +RV +
Sbjct: 5 RISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVAKGAKKPTSNFRPVLLPLQPLRVTY 64
Query: 59 RSRLAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + L GL L R L + L+D
Sbjct: 65 TLNGEGREEVHGLKGAEWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDAYAGV 124
Query: 118 LNCHKIPS 125
+
Sbjct: 125 VRVLASEH 132
>gi|225027255|ref|ZP_03716447.1| hypothetical protein EUBHAL_01511 [Eubacterium hallii DSM 3353]
gi|224955408|gb|EEG36617.1| hypothetical protein EUBHAL_01511 [Eubacterium hallii DSM 3353]
Length = 245
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 2/209 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L V GE + L ++T++ G+ F R + + L+ + +N
Sbjct: 8 TGIVLSVYPVGENDRRLTILTKERGKIQVFARGSRRPKHPLFGVTQPLIYCEFMVTDTRN 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI--FLNCHKI 123
+ + L +Y + + L FL K
Sbjct: 68 YTYLNSAECKDYFYFLKKDLEDIYYSSYFAEVAEYFTMEGQDERNILNLLFVTFLAMKKK 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I EL +L+ GFGL +CV G + L +S + GG +C + +
Sbjct: 128 LISLSLIRRIYELKILQFAGFGLQSFQCVHCGNEEHLTRISFEEGGMLCSGCAVKGQGRE 187
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYF 212
+ + + + +F L +
Sbjct: 188 VESAVLYVLQYVSSIPLNRLYSFTLKENI 216
>gi|28410768|emb|CAD67154.1| DNA repair protein RecO [Tropheryma whipplei TW08/27]
Length = 247
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 5/210 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+++D AI+L + GE + I+ + TR G + + + + L+ ++ +
Sbjct: 10 HYRDRAIVLRTKPLGEADRIITLFTRSNGTSDFVAKGIRRPKSRFGSSLEPFTVIDA-FL 68
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
G + E+L S+ ++L+ S+ I R L ++ +D+L+ +
Sbjct: 69 YIGRGMDGVSQAEILASYGSRLVKSTESYIAANVIAETGRRLGIAGGSVQQFDLLHGAFS 128
Query: 120 CHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL- 177
I L + G+ L C + + +GG VC S
Sbjct: 129 ALSRGISSPEAICSSYLLRSMSAAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCSEH 188
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
P L +E + + +
Sbjct: 189 PVVNNKLCEYLLALREGDWPYINESDESLR 218
>gi|312143996|ref|YP_003995442.1| DNA repair protein RecO [Halanaerobium sp. 'sapolanicus']
gi|311904647|gb|ADQ15088.1| DNA repair protein RecO [Halanaerobium sp. 'sapolanicus']
Length = 255
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/194 (13%), Positives = 59/194 (30%), Gaps = 3/194 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS-HRMQPILQAGNLVRVNWRSR 61
++ +AI+L GE + ++ + T++ G+ R + ++ + L +
Sbjct: 4 FETEAIVLKQFDLGESDRLITLYTKENGKVKAVARGARKGNKSRSGLVLPFSHHHFTLYK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
E + + + + + R E E L+ +L + L
Sbjct: 64 GRSLAKINHIESIAMNSKLREDLDYMAHASVAAEYIERAGLEFEADQALFSLLAVILEYM 123
Query: 122 KIPSVIGKIFVQ--IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+F E LL +G ++ C V G +L +
Sbjct: 124 NKAEKNELLFYLTVFEAKLLLLLGVKPEIESCTVCGEKINLKGFTAVGVKEGGSICRECL 183
Query: 180 AEKMLVLPSFLWKE 193
++ F +
Sbjct: 184 SKAEFDYSDFSLNQ 197
>gi|288916968|ref|ZP_06411340.1| DNA repair protein RecO [Frankia sp. EUN1f]
gi|288351677|gb|EFC85882.1| DNA repair protein RecO [Frankia sp. EUN1f]
Length = 305
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 71/178 (39%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L + E + ++ V+TR+ GR + + S R L+ G V +
Sbjct: 2 YRDEGVVLRTMPFAEADRVVTVLTRRNGRVRAVAKGVRRTSSRFGARLEPGTYVDLQLHE 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++L ++ A + ++ L E L +
Sbjct: 62 GRSLDT-VTQADILGAYGATIAQEYARYTAAAVMLETAERLTSEERQPAFRLFLLLVGGL 120
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + ++ LL+++ G+G+ L +C + G + +S SGG VC
Sbjct: 121 RTLAAGERTPSLVLDAFLLRSLTVSGYGMALDECALCGESGPHHSLSVASGGVVCPEC 178
>gi|78044245|ref|YP_359299.1| putative DNA repair protein RecO [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576933|sp|Q3AEY5|RECO_CARHZ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|77996360|gb|ABB15259.1| putative DNA repair protein RecO [Carboxydothermus hydrogenoformans
Z-2901]
Length = 240
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 2/195 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
D+ I+L +G+ + +L ++T++ G+ + + + R N R +
Sbjct: 6 DEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIYLRQSN 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVP-LFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L + L+ I RF P + +LY+ + L
Sbjct: 66 DYFIVEQAEGIEYFPNLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSLRLLNS 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ EL LL GF T C V + +W G + P
Sbjct: 126 GVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPYRGEVWYFGAGEGGIVCPSCRPIEGI 185
Query: 183 MLVLPSFLWKEEQTI 197
+ + K +
Sbjct: 186 YFEIFPEVVKGMNAL 200
>gi|118618890|ref|YP_907222.1| DNA repair protein RecO [Mycobacterium ulcerans Agy99]
gi|166221902|sp|A0PTT2|RECO_MYCUA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118571000|gb|ABL05751.1| recombination protein O RecO [Mycobacterium ulcerans Agy99]
Length = 265
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGSRLEPFAHIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ A +++ +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSIDAFAADIVNDYGRYTCGCAMLETAERLAGEERAPAPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 GALRAVADGSRPRDLLLDAYLLRAMGIAGWVPALTECARCATPGPHRAFHIAAGGSVCPH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|300788452|ref|YP_003768743.1| DNA repair protein RecO [Amycolatopsis mediterranei U32]
gi|299797966|gb|ADJ48341.1| DNA repair protein RecO [Amycolatopsis mediterranei U32]
Length = 292
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 4/179 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++TR++G+ + + S R L+ V V + +
Sbjct: 5 YRDTGVVLRTHKLGEADRIVTLLTRRHGKVRAVAKGVRRTSSRFGARLEPFGHVDVQFYT 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ V + + R E L+LY ++ L
Sbjct: 65 GRTLDVITQVETVDAFQLPLVADYQSYTAASAIAETADRLSAEEGEPVLKLYLLVVGALR 124
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + L + G+ LT+C G+ S +GG++C+ +
Sbjct: 125 ALADGTRDSSLVLDAFFLRAMSYAGWAPALTECARCGLPGPHTAFSVAAGGSMCQDCRI 183
>gi|149178097|ref|ZP_01856692.1| probable DNA repair protein recO [Planctomyces maris DSM 8797]
gi|148843017|gb|EDL57385.1| probable DNA repair protein recO [Planctomyces maris DSM 8797]
Length = 248
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 3/156 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ + +++ + + E + ++ TR +G+ + + + + R+ +
Sbjct: 3 NEKTEGVVIRLADFSESSKVITWFTRDFGKTAALAKGAKRLKSSFEAAIDLLATCRIVFI 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFL 118
+ + L L + S LY I L L E P ELYD L
Sbjct: 63 RKSSGGLDILTEAQLVNRFRPYPGSLSNLYVGYYIAELLDALTEEYDPHPELYDAACEVL 122
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
+ K ++ EL +L+ IG C
Sbjct: 123 RHLQEHDDFQKSLIKFELTILEEIGQLPQFEYCAGC 158
>gi|296454502|ref|YP_003661645.1| DNA repair protein RecO [Bifidobacterium longum subsp. longum
JDM301]
gi|296183933|gb|ADH00815.1| DNA repair protein RecO [Bifidobacterium longum subsp. longum
JDM301]
Length = 239
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V
Sbjct: 4 YRDEGVVLRTSKLGEADRIITILTRGHGKIRAVAKGVRRTKSRFGARLEPFMRVDVLIAE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ V + + + + + Y +L LN
Sbjct: 64 GRSLDVVSQAEAVAAYGAPIAADYAAYEAANVIVETIDKLASTEHEQLTNQYRLLIGALN 123
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
S + I + L G+ L CVV G +
Sbjct: 124 ALAKQSHAPQAIGDSYVMRALALAGWTPRLGTCVVCGKAE 163
>gi|296188180|ref|ZP_06856572.1| DNA repair protein RecO [Clostridium carboxidivorans P7]
gi|296047306|gb|EFG86748.1| DNA repair protein RecO [Clostridium carboxidivorans P7]
Length = 257
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RS 60
++ A+++ + E + ++ + + + G+ + + + ++
Sbjct: 12 IFKTRAVVIKTQDIKESDKLVWLFSEKLGKISTIAKGSKKSSNKLFTSTLQFSYGDYVVY 71
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++S L Y + + + E EL+ +L
Sbjct: 72 KGKSLYVINESTAIDSFQELLNDLDKLTYASYFCEIIDISMQDEESNRELFKLLITAFYF 131
Query: 121 HKIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
K I + E+ L+ G+G +L C + +
Sbjct: 132 LKNKVVDIEILARAFEIKALQATGYGFNLEHCCMCRKKINTSNYISFQYSGGVCQECAKV 191
Query: 180 AEKMLVLPSFLWKE 193
+ P++ +
Sbjct: 192 NGINVSYPAYNALK 205
>gi|169338088|ref|ZP_02622396.2| DNA repair protein RecO [Clostridium botulinum C str. Eklund]
gi|169294393|gb|EDS76526.1| DNA repair protein RecO [Clostridium botulinum C str. Eklund]
Length = 242
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 3/171 (1%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQNLGE 68
L + Y E + ++ + T + G+ + + ++ + + + R
Sbjct: 2 LKTQDYKENDKLVWLFTEKIGKVCAIAKGAKKNKSKFMSSTQTFCFGEYVLFRGKSLYSI 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KIPSVI 127
E+++S L YG + L + E EL+ +
Sbjct: 62 NEVEIIDSFQNLLKDMDTITYGSYLCELILIALEQEESDRELFKDFIKSFYFLKNHAMDL 121
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSVGL 177
+ E LLK G+G D KC + G + S + G VC S
Sbjct: 122 EILARTFEFKLLKATGYGFDFEKCCICGKRINKSNYLSIQYYGGVCDSCEK 172
>gi|300853997|ref|YP_003778981.1| putative DNA repair protein [Clostridium ljungdahlii DSM 13528]
gi|300434112|gb|ADK13879.1| predicted DNA repair protein [Clostridium ljungdahlii DSM 13528]
Length = 257
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 51/158 (32%), Gaps = 2/158 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RS 60
++ A+I+ + E + ++ + T + G+ R +S + ++
Sbjct: 8 IFKTRAVIIKTQDIKESDKLVWLFTEKLGKIATIARGSKSSKNSLFSTTLQFCYGDYVVY 67
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +++S L + Y + + E EL+ L
Sbjct: 68 KGKNLYVINESSLIDSFQDLLNDLNDLTYASYFCELTDIAMNDGETSSELFRYLVTCFYL 127
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ + EL +L+ G+GL+ C +
Sbjct: 128 IRSHGVDVETLARAFELKILQITGYGLNFDHCALCRKK 165
>gi|255525311|ref|ZP_05392251.1| DNA repair protein RecO [Clostridium carboxidivorans P7]
gi|255510983|gb|EET87283.1| DNA repair protein RecO [Clostridium carboxidivorans P7]
Length = 258
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RS 60
++ A+++ + E + ++ + + + G+ + + + ++
Sbjct: 13 IFKTRAVVIKTQDIKESDKLVWLFSEKLGKISTIAKGSKKSSNKLFTSTLQFSYGDYVVY 72
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++S L Y + + + E EL+ +L
Sbjct: 73 KGKSLYVINESTAIDSFQELLNDLDKLTYASYFCEIIDISMQDEESNRELFKLLITAFYF 132
Query: 121 HKIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
K I + E+ L+ G+G +L C + +
Sbjct: 133 LKNKVVDIEILARAFEIKALQATGYGFNLEHCCMCRKKINTSNYISFQYSGGVCQECAKV 192
Query: 180 AEKMLVLPSFLWKE 193
+ P++ +
Sbjct: 193 NGINVSYPAYNALK 206
>gi|300858945|ref|YP_003783928.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
gi|300686399|gb|ADK29321.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
gi|302206646|gb|ADL10988.1| DNA repair protein [Corynebacterium pseudotuberculosis C231]
gi|302331195|gb|ADL21389.1| DNA repair protein [Corynebacterium pseudotuberculosis 1002]
gi|308276889|gb|ADO26788.1| DNA repair protein [Corynebacterium pseudotuberculosis I19]
Length = 242
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 60/176 (34%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+++ A+++ +GE + I+ ++TR G + + + + + V ++ + +
Sbjct: 6 YRERALVVRTYDFGEADRIVVLLTRGRGIVRAVAKGVRRAKSRFGSRLQPFVELDVQLYV 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ L ++ L Y +V +L+D+ L +
Sbjct: 66 GRTLDSITAADTVAYFGSQLIDDPTRYAAACVVLESVEKMSIGAEPQLFDLAVEALQGLQ 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L + G+ L C G + P +GGAVC P
Sbjct: 126 TTAQPLYDVDAFLLQAMNCAGWAPSLFDCAQCGASGPHHAFHPVAGGAVCVHCRPP 181
>gi|305681524|ref|ZP_07404331.1| DNA repair protein RecO [Corynebacterium matruchotii ATCC 14266]
gi|305659729|gb|EFM49229.1| DNA repair protein RecO [Corynebacterium matruchotii ATCC 14266]
Length = 263
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 3/179 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+++ A+++ GE + I+ +T+ G G + + R + LQ + V +
Sbjct: 6 YRERALVIRTYDLGEADRIIVFLTQHRGLVRGVAKGVRRARSRFGSRLQPFVELDVQFYV 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
V + + + + + R L E LY ++ L
Sbjct: 66 GRELESVTAADTVGFYGSGIIDNITCYTAASAVLEAAERLSLAHDEHDDRLYPLVVDTLK 125
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L + G+ L C P++GGAVC + P
Sbjct: 126 QLQHAPEPKLRLDTFLLQAMTVAGWAPSLYYCAQCQAPGPHHAFHPRTGGAVCGTCRPP 184
>gi|193214068|ref|YP_001995267.1| DNA repair protein RecO [Chloroherpeton thalassium ATCC 35110]
gi|254790516|sp|B3QU22|RECO_CHLT3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|193087545|gb|ACF12820.1| DNA repair protein RecO [Chloroherpeton thalassium ATCC 35110]
Length = 259
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + AI+L +YG+++ I+ TR +G+ G V+ ++ + + +L+ GN + +
Sbjct: 1 MIRKTQAIVLRTINYGDQSKIVTFFTRSFGKLTGLVKGYRNPKGKFASVLEIGNDLDLVL 60
Query: 59 RSRLAQNLGEFRFEVLES-HCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + VL + S Q++ + + L ++++L+
Sbjct: 61 YKKDTREVQLITEAVLRAPMLGATSSLEQLSALHQTLELIRLTTENDDAHLGVFELLHAT 120
Query: 118 LNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
L + F ++ L+ +GF L+ KCV+TG
Sbjct: 121 LQKINVSRKNHISFFFYFQVQLISLLGFRLNFQKCVLTGK 160
>gi|118581288|ref|YP_902538.1| DNA repair protein RecO [Pelobacter propionicus DSM 2379]
gi|166221903|sp|A1AT10|RECO_PELPD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118503998|gb|ABL00481.1| DNA replication and repair protein RecO [Pelobacter propionicus DSM
2379]
Length = 246
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 2/156 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHL--GFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L YG+ + I+ + T ++GR R L+ + + +
Sbjct: 7 QAYVLSTLDYGDSDRIVALFTLEHGRIKAFARRARNSRRRFGAALEIFARIEAHVEIKQG 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
G + E+ + Y L + + PE P L+ +L +L+ +
Sbjct: 67 GLSGLRQAEIDCIYPGIRGDLGRIAYALYACELVDAMTPEGHPLPRLFRLLAAYLDRLEA 126
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ E+ LL +G+ L C G D
Sbjct: 127 YPASEQERRFFEINLLNILGYRPSLEACSRCGTPFD 162
>gi|256375393|ref|YP_003099053.1| DNA repair protein RecO [Actinosynnema mirum DSM 43827]
gi|255919696|gb|ACU35207.1| DNA repair protein RecO [Actinosynnema mirum DSM 43827]
Length = 250
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 6/183 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D ++L V+ GE + I+ ++T+++G+ + + S R L+ V +
Sbjct: 5 YRDTGVVLRVQKLGEADRIITLLTQRHGKLRAVAKGVRRTSSRFGARLEPFGHVDAQFHP 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + E +++ L+ +++ L E L L +
Sbjct: 65 GRTLDV-ITQVETIDAFGVVLVDDYQRYTAGCAVLETADRLTSEEGAPALRLYLLVTGAL 123
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ + +C G + ++GG VC +
Sbjct: 124 RALADGRRDPSLLLDAFLLRAMAFAGWAPAVGECARCGEPGPHRSFNVQAGGVVCANCRP 183
Query: 178 PYA 180
P +
Sbjct: 184 PGS 186
>gi|310287054|ref|YP_003938312.1| DNA repair protein RecO [Bifidobacterium bifidum S17]
gi|309250990|gb|ADO52738.1| DNA repair protein RecO [Bifidobacterium bifidum S17]
Length = 260
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V +
Sbjct: 4 YRDEGVVLRTAKLGEADRIVTLLTRSHGKIRAVAKGVRRVKSRFGGRLEPFMRVDVLIAT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
++ + + + + + Y +L LN
Sbjct: 64 GRTLDVVSQAESISAYAAPICADYGAYGIANVMVETADKLVSAEGERAVAQYRLLVGGLN 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
+ E +L+ + G+ L CVV G
Sbjct: 124 ALARHAHPATA--IGESYVLRALALAGWTPRLHSCVVCG 160
>gi|227503134|ref|ZP_03933183.1| DNA repair protein RecO [Corynebacterium accolens ATCC 49725]
gi|306836627|ref|ZP_07469593.1| recombination protein O [Corynebacterium accolens ATCC 49726]
gi|227076195|gb|EEI14158.1| DNA repair protein RecO [Corynebacterium accolens ATCC 49725]
gi|304567457|gb|EFM43056.1| recombination protein O [Corynebacterium accolens ATCC 49726]
Length = 238
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 7/206 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ +GE + ++ ++T+ +G + + + + LQ + V
Sbjct: 4 NYRDRAVVIRSYDFGEADRVIVLLTQNHGLVRAVAKGVRRAKSRFGSRLQLFVNLDVQLY 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFL 118
V + + + R + + LY+ + L
Sbjct: 64 VGKNLATISQADTVNYFGARLIEDYERYTAACAVLESAERLIYADGDGDPYLYNAVVATL 123
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + + G+ L C P GGA C P
Sbjct: 124 EHLQTEEPTQTLDAFLLQAMAHA-GWAPSLFDCAQCQRPGPHHAFHPAVGGAACHECRPP 182
Query: 179 YA---EKMLVLPSFLWKEEQTIDADS 201
A + + +L D +
Sbjct: 183 GAAEVDPETLHHLWLLAHGYPTDPTN 208
>gi|171057287|ref|YP_001789636.1| DNA repair protein RecO [Leptothrix cholodnii SP-6]
gi|170774732|gb|ACB32871.1| DNA repair protein RecO [Leptothrix cholodnii SP-6]
Length = 256
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRL-- 62
A +L + E ++ILE+ TR+ GR + + +++ +L + + S+
Sbjct: 13 AYVLHHHDWSESSLILELFTRELGRISAVAKGAKRPYSQLRCVLLPFQRLNIALGSKRIE 72
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + + + L G+ L R L ++P L+D L
Sbjct: 73 DGAEVQLLRSAEWAGGGAMPGGAALLAGMHLNEILLRGLARQDPHPHLFDAYAATLPALS 132
Query: 123 IPSV--IGKIFVQIELMLLKNIGFGLDL 148
P + E+ LL + G +L
Sbjct: 133 GPDDAGVAAALRAFEIRLLSDSGVLPEL 160
>gi|170720261|ref|YP_001747949.1| DNA repair protein RecO [Pseudomonas putida W619]
gi|229485560|sp|B1J4E2|RECO_PSEPW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|169758264|gb|ACA71580.1| DNA repair protein RecO [Pseudomonas putida W619]
Length = 227
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 14/232 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R + + +++ + V R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRVRAVLRRARG-KGGSLVRPFVPLEVELRGRSELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ A L GL L R LP P EL++ + L
Sbjct: 66 NVGRLDSM---GIAAWLHGDALFSGLYLNELLMRLLPAEAPQPELFEHYALTLQALAAGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL+++G+ L V + + + R + +
Sbjct: 123 PLEPLLRSFEWRLLEDLGYAFALDHDVSDEPIEADGLYRLQVDAGLERVYLVQ--PGLFN 180
Query: 186 LPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L + D +L +A + L + AL ++ L RE F +
Sbjct: 181 GAELLALAQADWDAPGALLAAKR-----LMRQALAVHLGPKPLVSRELFRKR 227
>gi|194337771|ref|YP_002019565.1| DNA repair protein RecO [Pelodictyon phaeoclathratiforme BU-1]
gi|238693422|sp|B4SGW0|RECO_PELPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|194310248|gb|ACF44948.1| DNA repair protein RecO [Pelodictyon phaeoclathratiforme BU-1]
Length = 261
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A+IL Y +++ I + TR++G+ ++ ++ + + + AGN+V +
Sbjct: 1 MIVKTRAVILREIKYRDQSKICSIYTREFGKMSIIIKGARNPKNRLSGLFSAGNVVDLVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIF 117
+ ++++ L L I+ R E L L+ +L
Sbjct: 61 YKKSSRDIQLATDGNLVLSPMVPEPDLERFAILYRIIDFVRHTTENDEKNLPLFTLLTGT 120
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L +++ L + +GF L CV +G
Sbjct: 121 LEQLYHTNVNFQQLYAWFLLRFVSLLGFQPSLRTCVFSG 159
>gi|154498353|ref|ZP_02036731.1| hypothetical protein BACCAP_02342 [Bacteroides capillosus ATCC
29799]
gi|150272664|gb|EDM99842.1| hypothetical protein BACCAP_02342 [Bacteroides capillosus ATCC
29799]
Length = 252
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 4/161 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M+ I+L +Y E + IL V+TR G+ R + Q +
Sbjct: 1 MHLTTQGIVLREVNYKESDKILTVLTRDLGKLTVKARACRRKNSPLAAASQLLVYSELTL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ LE G + E P L ++ L
Sbjct: 61 FEYRDYWSMDQGDS-LEQFWGVRQDVEKLALGSYFAEVMETVAEEGRPDPALLSLILNSL 119
Query: 119 NCHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
S + EL LL +G+ L C V GV +
Sbjct: 120 YALDKLSKPLPLVKAAYELKLLSLVGYEPMLDACAVCGVPE 160
>gi|227892550|ref|ZP_04010355.1| recombination protein O [Lactobacillus ultunensis DSM 16047]
gi|227865671|gb|EEJ73092.1| recombination protein O [Lactobacillus ultunensis DSM 16047]
Length = 250
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + + N + + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIITLIVKGALRPKSRLSAATLNFSTGTYIIYTSGH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + E +P + Y++ LN
Sbjct: 69 GLSNLRTYKEVKQFDGLYHDLTKNAYASFIFDLIDHAFVEYQPIGKYYNLALFALNKIDK 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G +L CV+ G + + S K GG VC +M
Sbjct: 129 GVDSEMITQIVQMKMLSAYGVEPELRHCVICGKEKGVFDYSIKLGGIVCSDHFGVVNSRM 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLKPK 193
>gi|206890233|ref|YP_002248192.1| DNA repair protein RecO [Thermodesulfovibrio yellowstonii DSM
11347]
gi|254790739|sp|B5YIN3|RECO_THEYD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|206742171|gb|ACI21228.1| DNA repair protein RecO [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 250
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 7/217 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M++ +AI+L YGE ++I+ +T+ YG F ++ + + + L+ ++++
Sbjct: 1 MHYSTEAIVLKNIPYGEADLIVTYLTKNYGLLNLFAKSPRKIKSRFGSSLEPLTYSQISF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + +++ + LFL ++ L + LP++EP EL+ +L L
Sbjct: 61 IGKEDNLQKIIQSDIIHPFQTIRENYRLFLQIANALRFLIQALPKKEPNSELFYLLLNTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + +++ L +G+ D C V Q+L S G +
Sbjct: 121 LYLEKRIKPDNYILFLKVRGLSILGYLPDFKNCGVC--RQELKEEFYYSSGFIICKKCSS 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
+ + T FL +
Sbjct: 179 SYHYSSSALPIPISQGVIKLLKEIS---TWTLNFLER 212
>gi|254819382|ref|ZP_05224383.1| DNA repair protein RecO [Mycobacterium intracellulare ATCC 13950]
Length = 265
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ ++S +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSIDAFATDIVSDYGRYTCGCAMLETAERLAGEERAPAPALHGLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ L +C +GG+VC
Sbjct: 120 SALRAVADGRRSRGLLLDAYLLRAMGIAGWAPALNECARCATPGPHRAFHVGAGGSVCTH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|326692994|ref|ZP_08229999.1| DNA repair protein RecO [Leuconostoc argentinum KCTC 3773]
Length = 263
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 17/236 (7%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS---RLA 63
I+L R Y + ++++ ++T G R + + +++ +
Sbjct: 6 GIVLYTRQYKDHDLLVRMLTENDGLRTFLARGAKKPKSTLSAAVQPFTILSFEGALPKRH 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLNCHK 122
LG + +L+ I L E Y + L +
Sbjct: 66 TGLGYINDAQQANLYPRLIDDIEANAYAALIASLIDQSYEEGEPLTRWYHQFELALQKLE 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I E+ LL +G + ++G S K G + +
Sbjct: 126 AGLDPQVIANIFEIQLLVPLGVAPNWRADPISGQVTGRFDYSEKYNGILAEEHYDLDEHR 185
Query: 183 MLVLPS--FLWKEEQTIDADSLKS---------AF-QLTDYFLNKYA-LQHNIIHC 225
+++ F ++ ID + ++ D+ +K L+
Sbjct: 186 LMLDQKTIFYLRQFSVIDLRQINQINLSPVTKRGLQRVIDHIYDKQVGLKPRAKTF 241
>gi|262196745|ref|YP_003267954.1| DNA repair protein RecO [Haliangium ochraceum DSM 14365]
gi|262080092|gb|ACY16061.1| DNA repair protein RecO [Haliangium ochraceum DSM 14365]
Length = 275
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 3/160 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW- 58
+ +IL YG+ ++I+ + TR +GR R + + + L L V
Sbjct: 5 QVASEGVILRAVPYGDADLIVTLYTRDFGRLSALGRAARKSKRRFGGALDMFTLSEVALR 64
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R+R ++ + S+ A L F + + P P L ++L
Sbjct: 65 RARSSELWTLESAQPRRSYSALALDVGTFAHASYGTELVRELSPVEAPDEPLLELLLALY 124
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ ++ EL LL +G L +C G +
Sbjct: 125 EELERDGAHAQVLRAFELALLDALGMAPVLDRCAACGRSD 164
>gi|311063922|ref|YP_003970647.1| DNA repair protein RecO [Bifidobacterium bifidum PRL2010]
gi|310866241|gb|ADP35610.1| RecO DNA repair protein [Bifidobacterium bifidum PRL2010]
Length = 260
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V +
Sbjct: 4 YRDEGVVLRTAKLGEADRIVTLLTRSHGKVRAVAKGVRRVKSRFGGRLEPFMRVDVLIAT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
++ + + + + + Y +L LN
Sbjct: 64 GRTLDVVSQVESISAYAAPICADYGAYGIANVMVETADKLVSAEGERAVAQYRLLVGGLN 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
+ E +L+ + G+ L CVV G
Sbjct: 124 ALARHAHPATA--IGESYVLRALALAGWTPRLHSCVVCG 160
>gi|224282594|ref|ZP_03645916.1| DNA repair protein RecO [Bifidobacterium bifidum NCIMB 41171]
gi|313139752|ref|ZP_07801945.1| DNA repair protein RecO [Bifidobacterium bifidum NCIMB 41171]
gi|313132262|gb|EFR49879.1| DNA repair protein RecO [Bifidobacterium bifidum NCIMB 41171]
Length = 260
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L GE + I+ ++TR +G+ + + + + L+ V V +
Sbjct: 4 YRDEGVVLRTAKLGEADRIVTLLTRSHGKVRAVAKGVRRVKSRFGGRLEPFMRVDVLIAT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
++ + + + + + Y +L LN
Sbjct: 64 GRTLDVVSQVESISAYAAPICADYGAYGIANVMVETADKLVSAEGERAVAQYRLLVGGLN 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
+ E +L+ + G+ L CVV G
Sbjct: 124 ALARHAHPATA--IGESYVLRALALAGWTPRLHSCVVCG 160
>gi|15674265|ref|NP_268438.1| DNA repair protein RecO [Streptococcus pyogenes M1 GAS]
gi|19745216|ref|NP_606352.1| DNA repair protein RecO [Streptococcus pyogenes MGAS8232]
gi|28894929|ref|NP_801279.1| DNA repair protein RecO [Streptococcus pyogenes SSI-1]
gi|50913365|ref|YP_059337.1| DNA repair protein RecO [Streptococcus pyogenes MGAS10394]
gi|56808893|ref|ZP_00366603.1| COG1381: Recombinational DNA repair protein (RecF pathway)
[Streptococcus pyogenes M49 591]
gi|71902685|ref|YP_279488.1| DNA repair protein RecO [Streptococcus pyogenes MGAS6180]
gi|71909833|ref|YP_281383.1| DNA repair protein RecO [Streptococcus pyogenes MGAS5005]
gi|94987650|ref|YP_595751.1| DNA repair protein RecO [Streptococcus pyogenes MGAS9429]
gi|94989528|ref|YP_597628.1| DNA repair protein RecO [Streptococcus pyogenes MGAS10270]
gi|94991517|ref|YP_599616.1| DNA repair protein RecO [Streptococcus pyogenes MGAS2096]
gi|94993415|ref|YP_601513.1| DNA repair protein RecO [Streptococcus pyogenes MGAS10750]
gi|139472905|ref|YP_001127620.1| DNA repair protein RecO [Streptococcus pyogenes str. Manfredo]
gi|161485758|ref|NP_663820.2| DNA repair protein RecO [Streptococcus pyogenes MGAS315]
gi|209558603|ref|YP_002285075.1| DNA repair protein RecO [Streptococcus pyogenes NZ131]
gi|306828288|ref|ZP_07461544.1| recombination protein O [Streptococcus pyogenes ATCC 10782]
gi|54039037|sp|P65988|RECO_STRP3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|54039038|sp|P65989|RECO_STRP8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|54041797|sp|P65987|RECO_STRP1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|61214792|sp|Q5XEK9|RECO_STRP6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|92087037|sp|Q48VX9|RECO_STRPM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361489|sp|Q1JE86|RECO_STRPB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361490|sp|Q1JP42|RECO_STRPC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361491|sp|Q1JJ89|RECO_STRPD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361492|sp|Q1J942|RECO_STRPF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221912|sp|A2RBY9|RECO_STRPG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238058648|sp|B5XJ12|RECO_STRPZ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|13621343|gb|AAK33160.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|19747307|gb|AAL96851.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28810174|dbj|BAC63112.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50902439|gb|AAT86154.1| RecO [Streptococcus pyogenes MGAS10394]
gi|71801780|gb|AAX71133.1| DNA repair protein [Streptococcus pyogenes MGAS6180]
gi|71852615|gb|AAZ50638.1| DNA repair protein [Streptococcus pyogenes MGAS5005]
gi|94541158|gb|ABF31207.1| DNA repair protein [Streptococcus pyogenes MGAS9429]
gi|94543036|gb|ABF33084.1| DNA repair protein recO [Streptococcus pyogenes MGAS10270]
gi|94545025|gb|ABF35072.1| DNA repair protein recO [Streptococcus pyogenes MGAS2096]
gi|94546923|gb|ABF36969.1| DNA repair protein recO [Streptococcus pyogenes MGAS10750]
gi|134271151|emb|CAM29361.1| DNA repair protein RecO [Streptococcus pyogenes str. Manfredo]
gi|209539804|gb|ACI60380.1| DNA repair protein recO [Streptococcus pyogenes NZ131]
gi|304429518|gb|EFM32571.1| recombination protein O [Streptococcus pyogenes ATCC 10782]
Length = 251
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 2/199 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
I+L R+Y E + ++++ T G+ + FV++ +M I+Q + ++
Sbjct: 8 GIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLS 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + ++ Y + + + E L+ L L+ +
Sbjct: 68 YVVDYSNVNTYRYINNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLD 127
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ E+ +L G L+ +C + T L S + +C + +
Sbjct: 128 YEILTNIFEIQILDRFGISLNFHECAICHRTDLPLDFSHRFSAVLCSEHYYKDNRRNHLD 187
Query: 187 PS--FLWKEEQTIDADSLK 203
P+ +L Q I D L+
Sbjct: 188 PNVIYLLSRFQKITFDDLR 206
>gi|260578245|ref|ZP_05846161.1| DNA repair protein RecO (recombination protein O) [Corynebacterium
jeikeium ATCC 43734]
gi|258603547|gb|EEW16808.1| DNA repair protein RecO (recombination protein O) [Corynebacterium
jeikeium ATCC 43734]
Length = 253
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 7/183 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+A +L GE ++IL ++T+ G + + R + L + V V
Sbjct: 9 FRDEAFVLRTYKLGEADLILVLLTKDNGLIRAVAKGIRKTRSRFGARLDRFSCVDVQIYP 68
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V + F G + F E ++ +L+ L
Sbjct: 69 GRSLANVTDAATVATYASPIVADVDRFYAGAAMLEMAQVFAAEPSSARSIFFLLDAALQQ 128
Query: 121 HKIPSVIGKIFVQ-----IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ L L+ G+ L C G P +GGAVC +
Sbjct: 129 LATQLTTPALPPVSVADEFVLHGLEVAGWEPSLVDCAQCGKRGPHRAFHPGAGGAVCVTC 188
Query: 176 GLP 178
P
Sbjct: 189 RPP 191
>gi|153953551|ref|YP_001394316.1| DNA repair protein RecO [Clostridium kluyveri DSM 555]
gi|219854173|ref|YP_002471295.1| hypothetical protein CKR_0830 [Clostridium kluyveri NBRC 12016]
gi|189039652|sp|A5N6N7|RECO_CLOK5 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790517|sp|B9E056|RECO_CLOK1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146346432|gb|EDK32968.1| RecO [Clostridium kluyveri DSM 555]
gi|219567897|dbj|BAH05881.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 257
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 3/206 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RS 60
++ AII+ + E + ++ + T + G+ + + R ++
Sbjct: 8 IFKTRAIIIKTQDIKESDKLVWLFTEKLGKISTIAKGSKKSRSPLFSTTLQFCYGDYVVY 67
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +++S L + Y + + E EL+ L
Sbjct: 68 KGKSLYVINESSLIDSFQHLLNDLNDLTYASYFCELTDIAMDDGESSRELFRYLATSFYL 127
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGLP 178
I + EL +LK G+GL+ C + ++ + G +CR
Sbjct: 128 IRSHAVDIETLARTFELKILKTTGYGLNFDYCALCRKKITSFEYLHLQYLGGICRECDKE 187
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKS 204
+ + K +I +++
Sbjct: 188 NSMHISYSTCSALKYLSSISMENVYK 213
>gi|114775463|ref|ZP_01451031.1| DNA repair protein RecO [Mariprofundus ferrooxydans PV-1]
gi|114553574|gb|EAU55955.1| DNA repair protein RecO [Mariprofundus ferrooxydans PV-1]
Length = 228
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 9/152 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
DD ++L + E ++I ++T +GR R + + + L + + WR
Sbjct: 3 EISDDGLLLRRIPFSETSLICHILTAGHGRITVMARGARRPKSIFRATLAPLYRLHITWR 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ S +L+ S L L+ I + +P Y L+ L+
Sbjct: 63 PGRSG----MGTLTDISRGEQLVDESRMLPALELIAVSSTLFQDGDPHG--YHELHEALS 116
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
++L+ G+ DL+ C
Sbjct: 117 LLADRHADEG-QCAALWLMLERAGWLGDLSHC 147
>gi|317504156|ref|ZP_07962155.1| recombination protein O [Prevotella salivae DSM 15606]
gi|315664732|gb|EFV04400.1| recombination protein O [Prevotella salivae DSM 15606]
Length = 240
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L +GE ++++V T Q GR VR S + + Q +++ +
Sbjct: 1 MLMKTKAIVLHAFKFGENKLMVDVFTEQQGRISFAVRIVNSPKAKIKKQYFQPFSVLEIE 60
Query: 58 WRSRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + + + L++ +
Sbjct: 61 YDYRQKTNIQTFNNVGIAYPFGSIPFEPLKLSICFFLAELTSYATHGEQENTHLFNYIVS 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + LL+ +GF +L
Sbjct: 121 SIEWLDRCDTGFSNFHLVYIVHLLRFLGFYPNLEDY 156
>gi|108800416|ref|YP_640613.1| DNA repair protein RecO [Mycobacterium sp. MCS]
gi|119869545|ref|YP_939497.1| DNA repair protein RecO [Mycobacterium sp. KMS]
gi|126436039|ref|YP_001071730.1| DNA repair protein RecO [Mycobacterium sp. JLS]
gi|119361466|sp|Q1B6C7|RECO_MYCSS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221899|sp|A3Q262|RECO_MYCSJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221900|sp|A1UIP9|RECO_MYCSK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|108770835|gb|ABG09557.1| DNA replication and repair protein RecO [Mycobacterium sp. MCS]
gi|119695634|gb|ABL92707.1| DNA replication and repair protein RecO [Mycobacterium sp. KMS]
gi|126235839|gb|ABN99239.1| DNA replication and repair protein RecO [Mycobacterium sp. JLS]
Length = 276
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + +++ + ++S +++ L E
Sbjct: 61 LHP-GRNLDIVTQVQAIDAFASDIVSDYGRYTSACAVLETAERLAGEERAPMPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 GALRAVADGSRPRELVLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHVAAGGSVCVH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|28476293|gb|AAO44382.1| DNA repair protein [Tropheryma whipplei str. Twist]
Length = 261
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 5/210 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+++D AI+L + GE + I+ + TR G + + + + L+ ++ +
Sbjct: 24 HYRDRAIVLRTKPLGEADRIITLFTRSNGTSDFVAKGIRRPKSRFGSSLEPFTVIDA-FL 82
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
G + E+L S+ ++L+ S+ I R L ++ +D+L+ +
Sbjct: 83 YIGRGMDGVSQAEILASYGSRLVKSTESYIAANVIAETGRRLGIAGGSVQQFDLLHGAFS 142
Query: 120 CHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL- 177
I L + G+ L C + + +GG VC S
Sbjct: 143 ALSRGISSPEAICSSYLLRSMSAAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCSEH 202
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
P L +E + + +
Sbjct: 203 PVVNNKLCEYLLALREGDWPYINESDESLR 232
>gi|325269653|ref|ZP_08136266.1| recombination protein O [Prevotella multiformis DSM 16608]
gi|324988021|gb|EGC19991.1| recombination protein O [Prevotella multiformis DSM 16608]
Length = 242
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF---VRNGQSHRMQPILQAGNLVRVN 57
M + AI+L +G+ ++I+++ T Q GR ++ + + Q L+ ++
Sbjct: 1 MIQKSKAIVLRSLKFGDTSLIVDMFTEQEGRISFITHVAKSAKGKVKKQFFQPLTLLELS 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L R + + + + L L + + LY +
Sbjct: 61 FDYRQRVTLQRIRDVRILRPYGSIPFDPAKSAVLLFLSEFLSYVTRGEQQNVHLYHYVQT 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SMEWLDEAVQGYANFHLVFMMRLSRFIGFFPNLEDY 156
>gi|145220483|ref|YP_001131192.1| DNA repair protein RecO [Prosthecochloris vibrioformis DSM 265]
gi|145206647|gb|ABP37690.1| DNA replication and repair protein RecO [Chlorobium phaeovibrioides
DSM 265]
Length = 276
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 4/160 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ A++L Y +++ + + TR++G+ ++ G++ + + I AGNL+
Sbjct: 16 IVKTRAVVLREIKYRDQSKLCTLFTREFGKLTVILKGGRNPKNRLSGIFTAGNLLDCVMY 75
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ-SIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + L + + L I + R E L+L+ +L L
Sbjct: 76 RKAEREVQLLSDASLLASPMFPEADMERFGALYRMIDLVNRTTERDEKNLQLFTLLETAL 135
Query: 119 NCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
++ L + +GF +L CV TG
Sbjct: 136 REICRERGNFPLLYAWFLLRFISILGFEPELRSCVFTGRN 175
>gi|311742976|ref|ZP_07716784.1| recombination protein O [Aeromicrobium marinum DSM 15272]
gi|311313656|gb|EFQ83565.1| recombination protein O [Aeromicrobium marinum DSM 15272]
Length = 262
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 6/205 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++TR++G+ + + R+ ++ V V +
Sbjct: 24 YRDVGVVLRTHKLGEADRIITLLTREHGQVRAVAKGVRKTTSRLGGRVEPFMHVDVQFAV 83
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDMLNIFL 118
++ + L + +++ L + + Y +L L
Sbjct: 84 GRTLDIVTQVET-ITPFAQHLGADYGAYTAGTAMLETAERLVDDGGEPAVQQYQLLVGAL 142
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ G I +L L G+ C G SGG +C + +
Sbjct: 143 RALTEGRHNPGMILDSYQLRALAIAGYAPSFGLCARCGAPGPHRNFHAPSGGILCDTCRM 202
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL 202
P + L + D +++
Sbjct: 203 PGSAAPSPSAVTLLAALLSGDWETV 227
>gi|184155317|ref|YP_001843657.1| DNA repair protein RecO [Lactobacillus fermentum IFO 3956]
gi|227514584|ref|ZP_03944633.1| recombination protein O [Lactobacillus fermentum ATCC 14931]
gi|260662169|ref|ZP_05863065.1| DNA repair protein RecO [Lactobacillus fermentum 28-3-CHN]
gi|238692972|sp|B2GBZ5|RECO_LACF3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|183226661|dbj|BAG27177.1| DNA repair protein RecO [Lactobacillus fermentum IFO 3956]
gi|227086995|gb|EEI22307.1| recombination protein O [Lactobacillus fermentum ATCC 14931]
gi|260553552|gb|EEX26444.1| DNA repair protein RecO [Lactobacillus fermentum 28-3-CHN]
Length = 272
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLA 63
+ +I+ R Y E++++++++T + G + FVR + ++ +
Sbjct: 9 EGVIMYRRDYRERDLLVKILTDRRGPLMFFVRGAKRKGFKLASDILPFTYGSYVGILADE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + Y + + + E Y + LN
Sbjct: 69 GLSYIVSAQETHHLTGIGADLNRNAYATYLLELVDQAFEEGRALGGWYKQVMAALNLINT 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ +E+ LL G +CVV G + L S K GG +C +
Sbjct: 129 GRDPQVVVNVLEVQLLNRFGIAPVWDRCVVCGRSDLPLDYSEKMGGMLCLHHFAEDPYRF 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLTPK 193
>gi|226226896|ref|YP_002761002.1| DNA repair protein RecO [Gemmatimonas aurantiaca T-27]
gi|226090087|dbj|BAH38532.1| DNA repair protein RecO [Gemmatimonas aurantiaca T-27]
Length = 249
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 14/227 (6%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRL 62
DAI+L V Y E + IL ++TR+ G R +S R + + + +++
Sbjct: 6 TDAIVLHVADYMESSRILRLVTRESGVVSVLARGARSSRKRFGAAVDLFAEGQAQLQTKP 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++L + A L S + +I + L EP +Y++L L+
Sbjct: 66 GRDLHTLVSFDVTRARAGLALSLVRFSAGSAIAEVALRLIHDEPAPMVYELLADGLDRLA 125
Query: 123 IPSVIGKIFVQ--IELMLLKNIGFGLDLTKCVVTGVTQDL---LWVSPKSGGAVCRSVGL 177
+ ML+ +GF L C D ++GG +C G
Sbjct: 126 TADDAHATSTALGVLWMLISEVGFRPSLDACAECHTPLDPAASARFHHRAGGTLCDRCGR 185
Query: 178 PYAEKMLVLPSF-------LWKEEQTIDADSLKSAFQLTDYFLNKYA 217
L+ P L + TI + ++ +L FL+++
Sbjct: 186 LSPGGRLLPPEAIHTVRLWLENQVPTIADNDARAHQRLLREFLSQHL 232
>gi|163840337|ref|YP_001624742.1| DNA repair protein RecO [Renibacterium salmoninarum ATCC 33209]
gi|162953813|gb|ABY23328.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209]
Length = 251
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L GE + I+ ++TR++G+ + + S + L+ + + S
Sbjct: 12 YRDDAVVLRTHKLGEADRIITLLTREHGQIRAVAKGIRRTSSKFGARLEPFMVADLQLIS 71
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ ++ + R Y +L +
Sbjct: 72 GRSLDIVSQAVSKSAYGEQIAAHYDRYTVATAMAETAERLTDADSESAGAQYRLLIGAFS 131
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ ++ LL+ + G+ T C G S GGAVC
Sbjct: 132 SLARGEHAPEL--ILDSYLLRALATAGWAPSFTDCARCGNPGPHTAFSAALGGAVCHDCR 189
Query: 177 LPYA 180
P +
Sbjct: 190 PPGS 193
>gi|187477632|ref|YP_785656.1| DNA repair protein [Bordetella avium 197N]
gi|115422218|emb|CAJ48742.1| DNA repair protein [Bordetella avium 197N]
Length = 195
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
A +L ++ E ++I++ +R++G + + +P+L A + ++W
Sbjct: 12 RAYMLHATAWRETSLIVQSFSREHGCIALVAKGAKRPYSVLRPVLSAFQPLLMSWSGGGE 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L + + L R LP + L+D L
Sbjct: 72 VKTLIRAEVAGVHP----LGGAALMSAWYMNELLLRLLPREDAHPLLFDAYETALQQLAG 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD 147
+ + E +LL+ G+G+D
Sbjct: 128 GTRAAGALRRFEWVLLRETGYGVD 151
>gi|163754380|ref|ZP_02161502.1| DNA repair protein [Kordia algicida OT-1]
gi|161325321|gb|EDP96648.1| DNA repair protein [Kordia algicida OT-1]
Length = 239
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 8/233 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M AI++ YG+ +I++ T G +R + Q + +
Sbjct: 1 MIVTTKAIVISTIKYGDTGVIVKCFTASDGIKSYLLRGILKSKKGKLKIAYFQPLMQLEI 60
Query: 57 NWRSRLAQN-LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ + + + + + + L L + E E L++ +
Sbjct: 61 VASHKNKGSLEYIKDVKTVYPYTSIHTQIAKSAIVLFLSEILNYSIQEEEKNDALFEFIE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L I I + L K GF + +S C +
Sbjct: 121 NALQWLDIHDEIANFHLVFLTNLTKYFGFYPETEDIHKDYFDLQEGQFFDQSTMNQCITG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
K L+ F + + + + F+ + L
Sbjct: 181 ENLTYFKRLLGIKFDEQNTIMLSSYRRNEILAI---FIQYFKLHLQGFRQPKS 230
>gi|323704185|ref|ZP_08115764.1| DNA repair protein RecO [Thermoanaerobacterium xylanolyticum LX-11]
gi|323536251|gb|EGB26023.1| DNA repair protein RecO [Thermoanaerobacterium xylanolyticum LX-11]
Length = 248
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 84/251 (33%), Gaps = 20/251 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
+ ++I+L R GE + ++ + T+ G+ + ++ + + + + +
Sbjct: 4 IKTESIVLKSRLIGESDKVVTLFTKSNGKIDAIAKGARNSKSRYLGSSHPFSIGYYVLFE 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++E++ S Y +++ L E E +Y++L +
Sbjct: 64 GQNYYYIDQWELIHSFLKIDDDILKLSYASYFADIVYKLLEENEKNTNIYNLLKYSMFLL 123
Query: 122 KIPSVIGKIFVQIEL-MLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ + + +G+ ++ C+ G ++++ SP GG +CR
Sbjct: 124 EKDLFDCDLLSITFCLKFVTFMGYMPEVHHCLSCGRDDNIMYFSPLKGGVLCRDCKSSAD 183
Query: 181 EKMLVLPSFLWKEEQTIDA-----------DSLKSAF-QLTDYFLNKYALQHNIIHCHLL 228
+ + L + + ++ +++ + ++
Sbjct: 184 DIFYIKRETLNMLRYLLSNGFGNIAKLRIQKDILVELDKIVTDYMSVHFDKNFESKY--- 240
Query: 229 RENFLGKLLEL 239
FL KL +
Sbjct: 241 ---FLDKLKNM 248
>gi|225872266|ref|YP_002753721.1| DNA repair protein RecO [Acidobacterium capsulatum ATCC 51196]
gi|225794025|gb|ACO34115.1| DNA repair protein RecO [Acidobacterium capsulatum ATCC 51196]
Length = 251
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 2/152 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
++I+L E ++++ + TR+ G+ G ++G R + L+ V ++ +
Sbjct: 7 ESIVLKSWPLHEADLVVSLFTREAGKIKGIAKSGAKSRRRFGGALEPMTHVLASYVEKPR 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
Q L + + L + E+ L + + H
Sbjct: 67 QELVRLDACEIVTSPLSDPMDYARAAALAFYTEVLEEALPDHDPQEVIFRLVLSVLAHTR 126
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
I L + + +G+ DLT C V
Sbjct: 127 QGAIWMPVTYFALWMPRLLGWLPDLTHCAVCD 158
>gi|169830679|ref|YP_001716661.1| DNA repair protein RecO [Candidatus Desulforudis audaxviator
MP104C]
gi|238688218|sp|B1I1S7|RECO_DESAP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|169637523|gb|ACA59029.1| DNA repair protein RecO [Candidatus Desulforudis audaxviator
MP104C]
Length = 249
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 4/156 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
+Q +AI+L + E + L ++TR G+ + R + +Q R
Sbjct: 3 QYQTEAIVLRASAVREADRTLVLLTRDRGKLRVWAHGAARPTSRKRGAVQPFCRSRFLLE 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + + E LE A F E + +Y +L L
Sbjct: 63 -RGREIDVVRQAEALEEFPALHADLEALALAGYVCELAEGFAAEGQAEPGIYGLLLQVLR 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ E +L GFG +L C G
Sbjct: 122 RLAEDKSGLPVR-FFEARILALTGFGPELGSCAGCG 156
>gi|119503990|ref|ZP_01626071.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2080]
gi|119459993|gb|EAW41087.1| DNA repair protein RecO [marine gamma proteobacterium HTCC2080]
Length = 259
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 64/208 (30%), Gaps = 11/208 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM----QPILQAGNLVRVNWRS 60
+ A +L R+YG+ +++++ GR V+ G+ +LQ + V
Sbjct: 6 EPAWLLHRRNYGDSGFLVDILGLNSGRISAVVKGGRRKARGGSYAGVLQPFTPLLVATSG 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + L+ G L R LP+ C L+ + ++
Sbjct: 66 RGELKT---LSRLELAGASIDLAGERVFSGFYLNELLVRLLPKFVSCPTLFALYGGTIDA 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV---GL 177
+ + + ELMLL+ +G+GL +
Sbjct: 123 L-VVTEAELDLRKFELMLLEELGYGLRFDTDANNDPIEAASAYLYDPTAGFLPRAFGLEG 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ ++ + L +
Sbjct: 182 AWKKEGRLQGDQLLNMADWLFNGDGLDG 209
>gi|125973581|ref|YP_001037491.1| DNA replication and repair protein RecO [Clostridium thermocellum
ATCC 27405]
gi|256003399|ref|ZP_05428390.1| DNA repair protein RecO [Clostridium thermocellum DSM 2360]
gi|281417785|ref|ZP_06248805.1| DNA repair protein RecO [Clostridium thermocellum JW20]
gi|166221889|sp|A3DEB9|RECO_CLOTH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|125713806|gb|ABN52298.1| DNA replication and repair protein RecO [Clostridium thermocellum
ATCC 27405]
gi|255992689|gb|EEU02780.1| DNA repair protein RecO [Clostridium thermocellum DSM 2360]
gi|281409187|gb|EFB39445.1| DNA repair protein RecO [Clostridium thermocellum JW20]
gi|316940178|gb|ADU74212.1| DNA repair protein RecO [Clostridium thermocellum DSM 1313]
Length = 251
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 3/169 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + + I++ + GE + I+ + ++ G+ + + + + L +
Sbjct: 1 MNYLKTSGIVIKEVNTGEADRIITIFSKNKGKISALAKGARRPKSHLVAGTQLLCYSEFV 60
Query: 60 -SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +V+ES Y + + + E +P L + L
Sbjct: 61 LFKGKDMYTVNSCDVIESFYDIRNDLERLTYAAHMMDIVNDVILENQPASRLLQLFLNSL 120
Query: 119 NCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I E+ LL +G+ ++ C+ G T
Sbjct: 121 YMLSKTDRSPLQIVRVFEIRLLSTMGYAPWVSSCIKCGSTVFDSMYFSF 169
>gi|302389488|ref|YP_003825309.1| DNA repair protein RecO [Thermosediminibacter oceani DSM 16646]
gi|302200116|gb|ADL07686.1| DNA repair protein RecO [Thermosediminibacter oceani DSM 16646]
Length = 251
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 2/191 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ +A+++G R GE + IL + + + G+ R + R + +
Sbjct: 4 YTTEAVVVGYRDLGEADRILTLFSPERGKIHAVARGVRRPRSPLMAGTQLFSYSKFLLVE 63
Query: 63 AQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+NL L+ S YG L E E EL+ L
Sbjct: 64 GRNLDSISQCELKESFFRIREDLDRMAYGSYFAELLRISTRESEKSEELFRFFMKVLYLL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLPYA 180
++ + + EL L+ G+ L+ CV + + S GG +C
Sbjct: 124 QVWEDLEFMARIFELKLMALQGYTPQLSHCVNCRNDELKEIRFSHALGGILCEKCRGSDE 183
Query: 181 EKMLVLPSFLW 191
+ +++ + L
Sbjct: 184 KSVVISRAVLM 194
>gi|153815602|ref|ZP_01968270.1| hypothetical protein RUMTOR_01838 [Ruminococcus torques ATCC 27756]
gi|317502139|ref|ZP_07960317.1| DNA repair protein RecO [Lachnospiraceae bacterium 8_1_57FAA]
gi|331090349|ref|ZP_08339232.1| DNA repair protein RecO [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847033|gb|EDK23951.1| hypothetical protein RUMTOR_01838 [Ruminococcus torques ATCC 27756]
gi|316896456|gb|EFV18549.1| DNA repair protein RecO [Lachnospiraceae bacterium 8_1_57FAA]
gi|330401304|gb|EGG80892.1| DNA repair protein RecO [Lachnospiraceae bacterium 3_1_46FAA]
Length = 255
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 3/211 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L GE + + ++T++ G+ F R + + + +
Sbjct: 16 TGIVLSTMPVGEYDRRVVILTKEQGKISAFARGARRPNSPLVGALNPFSFGTFTMYEGRT 75
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ + ++ A+L + YG + + E E+ +L L
Sbjct: 76 SYTIQSASISNYFAELRGDIIGAYYGFYFLEFTDYYTKEFNDEREMLKLLYQTLRALTNP 135
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY-AEK 182
I EL L G + +C+ G + S GG VC
Sbjct: 136 HIPNMLIRYIFELKALTINGQAPQVFQCMTCGNKERHAVFSAVKGGLVCSECMKDVRDGM 195
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFL 213
L + + F +T+ L
Sbjct: 196 SLDPSTLYSMQYIETSTIEKLYTFNVTEKVL 226
>gi|308379182|ref|ZP_07485400.2| hypothetical protein TMJG_00632 [Mycobacterium tuberculosis
SUMu010]
gi|308357820|gb|EFP46671.1| hypothetical protein TMJG_00632 [Mycobacterium tuberculosis
SUMu010]
Length = 307
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 43 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIEVQ 102
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ +++ +I+ L E
Sbjct: 103 LHP-GRNLDIVTQVVSVDAFATDIVADYGRYTCGCAILETAERLAGEERAPAPALHRLTV 161
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 162 GALRAVADGQRPRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHIATGGSVCAH 221
Query: 175 V 175
Sbjct: 222 C 222
>gi|308375863|ref|ZP_07445349.2| hypothetical protein TMGG_00923 [Mycobacterium tuberculosis
SUMu007]
gi|308344944|gb|EFP33795.1| hypothetical protein TMGG_00923 [Mycobacterium tuberculosis
SUMu007]
Length = 273
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 9 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIEVQ 68
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ +++ +I+ L E
Sbjct: 69 LHP-GRNLDIVTQVVSVDAFATDIVADYGRYTCGCAILETAERLAGEERAPAPALHRLTV 127
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 128 GALRAVADGQRPRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHIATGGSVCAH 187
Query: 175 V 175
Sbjct: 188 C 188
>gi|15609499|ref|NP_216878.1| DNA repair protein RecO [Mycobacterium tuberculosis H37Rv]
gi|15841874|ref|NP_336911.1| DNA repair protein RecO [Mycobacterium tuberculosis CDC1551]
gi|31793539|ref|NP_856032.1| DNA repair protein RecO [Mycobacterium bovis AF2122/97]
gi|121638241|ref|YP_978465.1| DNA repair protein RecO [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662194|ref|YP_001283717.1| DNA repair protein RecO [Mycobacterium tuberculosis H37Ra]
gi|148823565|ref|YP_001288319.1| DNA repair protein RecO [Mycobacterium tuberculosis F11]
gi|167968759|ref|ZP_02551036.1| DNA repair protein RecO [Mycobacterium tuberculosis H37Ra]
gi|215404288|ref|ZP_03416469.1| DNA repair protein RecO [Mycobacterium tuberculosis 02_1987]
gi|215412108|ref|ZP_03420872.1| DNA repair protein RecO [Mycobacterium tuberculosis 94_M4241A]
gi|215431302|ref|ZP_03429221.1| DNA repair protein RecO [Mycobacterium tuberculosis EAS054]
gi|215446606|ref|ZP_03433358.1| DNA repair protein RecO [Mycobacterium tuberculosis T85]
gi|218754090|ref|ZP_03532886.1| DNA repair protein RecO [Mycobacterium tuberculosis GM 1503]
gi|219558352|ref|ZP_03537428.1| DNA repair protein RecO [Mycobacterium tuberculosis T17]
gi|224990735|ref|YP_002645422.1| DNA repair protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|253798560|ref|YP_003031561.1| DNA repair protein RecO [Mycobacterium tuberculosis KZN 1435]
gi|254232504|ref|ZP_04925831.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365139|ref|ZP_04981185.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551409|ref|ZP_05141856.1| DNA repair protein RecO [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260187365|ref|ZP_05764839.1| DNA repair protein RecO [Mycobacterium tuberculosis CPHL_A]
gi|260201486|ref|ZP_05768977.1| DNA repair protein RecO [Mycobacterium tuberculosis T46]
gi|260205663|ref|ZP_05773154.1| DNA repair protein RecO [Mycobacterium tuberculosis K85]
gi|289443883|ref|ZP_06433627.1| DNA repair protein RecO [Mycobacterium tuberculosis T46]
gi|289448004|ref|ZP_06437748.1| DNA repair protein RecO [Mycobacterium tuberculosis CPHL_A]
gi|289553848|ref|ZP_06443058.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570504|ref|ZP_06450731.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289575056|ref|ZP_06455283.1| DNA repair protein RecO [Mycobacterium tuberculosis K85]
gi|289746140|ref|ZP_06505518.1| DNA repair protein recO [Mycobacterium tuberculosis 02_1987]
gi|289754467|ref|ZP_06513845.1| DNA repair protein RecO [Mycobacterium tuberculosis EAS054]
gi|289758486|ref|ZP_06517864.1| DNA repair protein recO [Mycobacterium tuberculosis T85]
gi|289762528|ref|ZP_06521906.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994534|ref|ZP_06800225.1| DNA repair protein RecO [Mycobacterium tuberculosis 210]
gi|297634964|ref|ZP_06952744.1| DNA repair protein RecO [Mycobacterium tuberculosis KZN 4207]
gi|297731956|ref|ZP_06961074.1| DNA repair protein RecO [Mycobacterium tuberculosis KZN R506]
gi|298525844|ref|ZP_07013253.1| DNA repair protein recO [Mycobacterium tuberculosis 94_M4241A]
gi|306776627|ref|ZP_07414964.1| hypothetical protein TMAG_02921 [Mycobacterium tuberculosis
SUMu001]
gi|306780400|ref|ZP_07418737.1| hypothetical protein TMBG_00906 [Mycobacterium tuberculosis
SUMu002]
gi|306785150|ref|ZP_07423472.1| hypothetical protein TMCG_00462 [Mycobacterium tuberculosis
SUMu003]
gi|306789511|ref|ZP_07427833.1| hypothetical protein TMDG_00840 [Mycobacterium tuberculosis
SUMu004]
gi|306793836|ref|ZP_07432138.1| hypothetical protein TMEG_02729 [Mycobacterium tuberculosis
SUMu005]
gi|306798233|ref|ZP_07436535.1| hypothetical protein TMFG_01326 [Mycobacterium tuberculosis
SUMu006]
gi|306804109|ref|ZP_07440777.1| hypothetical protein TMHG_01556 [Mycobacterium tuberculosis
SUMu008]
gi|306968510|ref|ZP_07481171.1| hypothetical protein TMIG_01039 [Mycobacterium tuberculosis
SUMu009]
gi|307080444|ref|ZP_07489614.1| hypothetical protein TMKG_00625 [Mycobacterium tuberculosis
SUMu011]
gi|307085039|ref|ZP_07494152.1| hypothetical protein TMLG_02110 [Mycobacterium tuberculosis
SUMu012]
gi|313659290|ref|ZP_07816170.1| DNA repair protein RecO [Mycobacterium tuberculosis KZN V2475]
gi|54039035|sp|P65984|RECO_MYCBO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|54041795|sp|P65983|RECO_MYCTU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221897|sp|A1KL52|RECO_MYCBP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221901|sp|A5U555|RECO_MYCTA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254764646|sp|C1AQS5|RECO_MYCBT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|2078037|emb|CAB08461.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13882140|gb|AAK46725.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619132|emb|CAD97244.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493889|emb|CAL72364.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601563|gb|EAY60573.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150653|gb|EBA42698.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506346|gb|ABQ74155.1| DNA repair protein RecO [Mycobacterium tuberculosis H37Ra]
gi|148722092|gb|ABR06717.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773848|dbj|BAH26654.1| DNA repair protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|253320063|gb|ACT24666.1| DNA repair protein RecO [Mycobacterium tuberculosis KZN 1435]
gi|289416802|gb|EFD14042.1| DNA repair protein RecO [Mycobacterium tuberculosis T46]
gi|289420962|gb|EFD18163.1| DNA repair protein RecO [Mycobacterium tuberculosis CPHL_A]
gi|289438480|gb|EFD20973.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539487|gb|EFD44065.1| DNA repair protein RecO [Mycobacterium tuberculosis K85]
gi|289544258|gb|EFD47906.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686668|gb|EFD54156.1| DNA repair protein recO [Mycobacterium tuberculosis 02_1987]
gi|289695054|gb|EFD62483.1| DNA repair protein RecO [Mycobacterium tuberculosis EAS054]
gi|289710034|gb|EFD74050.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289714050|gb|EFD78062.1| DNA repair protein recO [Mycobacterium tuberculosis T85]
gi|298495638|gb|EFI30932.1| DNA repair protein recO [Mycobacterium tuberculosis 94_M4241A]
gi|308214946|gb|EFO74345.1| hypothetical protein TMAG_02921 [Mycobacterium tuberculosis
SUMu001]
gi|308326722|gb|EFP15573.1| hypothetical protein TMBG_00906 [Mycobacterium tuberculosis
SUMu002]
gi|308330135|gb|EFP18986.1| hypothetical protein TMCG_00462 [Mycobacterium tuberculosis
SUMu003]
gi|308333996|gb|EFP22847.1| hypothetical protein TMDG_00840 [Mycobacterium tuberculosis
SUMu004]
gi|308337777|gb|EFP26628.1| hypothetical protein TMEG_02729 [Mycobacterium tuberculosis
SUMu005]
gi|308341458|gb|EFP30309.1| hypothetical protein TMFG_01326 [Mycobacterium tuberculosis
SUMu006]
gi|308349255|gb|EFP38106.1| hypothetical protein TMHG_01556 [Mycobacterium tuberculosis
SUMu008]
gi|308353875|gb|EFP42726.1| hypothetical protein TMIG_01039 [Mycobacterium tuberculosis
SUMu009]
gi|308361766|gb|EFP50617.1| hypothetical protein TMKG_00625 [Mycobacterium tuberculosis
SUMu011]
gi|308365411|gb|EFP54262.1| hypothetical protein TMLG_02110 [Mycobacterium tuberculosis
SUMu012]
gi|323719029|gb|EGB28177.1| hypothetical protein TMMG_01654 [Mycobacterium tuberculosis
CDC1551A]
gi|326903978|gb|EGE50911.1| hypothetical protein TBPG_01867 [Mycobacterium tuberculosis W-148]
gi|328458328|gb|AEB03751.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 265
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIEVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ +++ +I+ L E
Sbjct: 61 LHP-GRNLDIVTQVVSVDAFATDIVADYGRYTCGCAILETAERLAGEERAPAPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 GALRAVADGQRPRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHIATGGSVCAH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|41408240|ref|NP_961076.1| DNA repair protein RecO [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|61215113|sp|Q73Y16|RECO_MYCPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|41396595|gb|AAS04459.1| hypothetical protein MAP_2142c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 265
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ ++S +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSIDAFATDIVSDYGRYTCACAMLETAERLAGEERAPAPALHGLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 SALRAVADGRRSRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHVGAGGSVCPH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|295398007|ref|ZP_06808063.1| recombination protein O [Aerococcus viridans ATCC 11563]
gi|294973765|gb|EFG49536.1| recombination protein O [Aerococcus viridans ATCC 11563]
Length = 266
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 2/184 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
D I+L R Y EK++++++ T+++G+ + F++N Q A +R ++ +
Sbjct: 10 DGIVLFTRKYKEKDLLIKIFTKEFGKRMFFIKNIQRQNNGLREIAFPYMRASFVGTINDK 69
Query: 66 LGEFRFEVLESHCA--KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F + + + Y + +++D+L L +
Sbjct: 70 GFSFLNDTDDVLFPKTTISDIQANAYAAYMTGLTDAAFEDFIKEDKVFDLLWHGLGKIEA 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E+ LL G + C + G Q S + G +C ++
Sbjct: 130 GVDPSVVANIFEIQLLPKFGVAPNFRSCAICGRDQGRFDYSMQYAGVLCEQHFHMDDRRL 189
Query: 184 LVLP 187
P
Sbjct: 190 HWSP 193
>gi|296269159|ref|YP_003651791.1| DNA repair protein RecO [Thermobispora bispora DSM 43833]
gi|296091946|gb|ADG87898.1| DNA repair protein RecO [Thermobispora bispora DSM 43833]
Length = 260
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 4/157 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+ ++L + GE + I+ ++T++ G+ G + + R L+ V + +
Sbjct: 4 YRDEGVVLRTQKLGEADRIITILTKRTGKVRGVAKGIRRTTSRFGARLEPFTHVDLQLHA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ ++ + A + + + G+ + R + L+ +L L
Sbjct: 64 GRSLDVITQAETLHPYGQAIVRDYARYTAGMAMLETADRLAAAEKEPALRLFLLLVGGLR 123
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTG 155
+ ++ L L G+ LT C G
Sbjct: 124 TLAEGAHEPRLVLDAFLLRSLAVAGYAPALTACARCG 160
>gi|219847691|ref|YP_002462124.1| DNA repair protein RecO [Chloroflexus aggregans DSM 9485]
gi|219541950|gb|ACL23688.1| DNA repair protein RecO [Chloroflexus aggregans DSM 9485]
Length = 251
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 2/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ +A+IL E + +L + T + G+ + + + + V+ +
Sbjct: 6 YRSEAVILRRNDVAEADRLLLIATPK-GKRWVIAKGARKTKSRLAGHIELFTHVHMMLAV 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ +++ + S G + RF E + L+ +L
Sbjct: 65 GRNLDIVTQSQIVHAFPTLRSELSRLGCGYYAAELYDRFTVEEDDNPPLFQLLVETFMSL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
EL LL +G+ L +CVV
Sbjct: 125 DRSPQPDLTLRSFELHLLHLLGYRPQLHRCVVCDDI 160
>gi|111221453|ref|YP_712247.1| DNA repair protein RecO [Frankia alni ACN14a]
gi|111148985|emb|CAJ60665.1| DNA repair protein recO (Recombination protein O) [Frankia alni
ACN14a]
Length = 241
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L E + I+ V+TR+ GR + + S R L+ G V + S
Sbjct: 2 YRDEGVVLRTTPLAEADRIITVLTRRGGRVRAVAKGVRKTSSRFGSRLEPGTYVDLMLHS 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + +++ + + ++ L E L L +
Sbjct: 62 GRSLDT-VTQADIISPYGTTIALDYARHTAAAVMLETAERLTSEERQPALRLFLLLVGGL 120
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + ++ LL+++ G+G+ L C G L +S GG VC
Sbjct: 121 RTLAAGQRPAPLVLDAYLLRSLAVSGYGMALDDCARCGEPGQHLSLSVAGGGVVCPQC 178
>gi|315655179|ref|ZP_07908080.1| DNA repair protein RecO [Mobiluncus curtisii ATCC 51333]
gi|315490434|gb|EFU80058.1| DNA repair protein RecO [Mobiluncus curtisii ATCC 51333]
Length = 243
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 5/205 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++T ++G R + R+ L+ V +
Sbjct: 1 MRTFRDAAVVLRTQDLGEADRIVTLLTEKHGLLRCVGRGVRKTMSRLGARLEPFGAVDIQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNI 116
R + + E+L + L + +V L E Y +
Sbjct: 61 IRWGKSDLHHIEQVEILAPYGRSLANDYARYTAANLMVETLERLTEDSWTNERYYHLTIG 120
Query: 117 FLNCHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L+ I L L+ G+ C G + +P GGA+C +
Sbjct: 121 ALHALATGRHEPSLILDSYLLRLMSLAGWAASCWDCASCGAGGPHEYFNPSGGGAMCVNC 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDAD 200
L A + L T D
Sbjct: 181 KLTGARAVDSETMRLLAALATGDWQ 205
>gi|91215439|ref|ZP_01252410.1| DNA repair protein [Psychroflexus torquis ATCC 700755]
gi|91186391|gb|EAS72763.1| DNA repair protein [Psychroflexus torquis ATCC 700755]
Length = 239
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 5/161 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M + AI++ +GE ++I++ T + G ++ + + + Q L+ +
Sbjct: 1 MQLKTKAIVISNVKFGEADLIVKCFTLEKGVVSFMLKGIRKSKKGRMRVSLFQPLTLLEI 60
Query: 57 NWRSR-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ +V + L + E E L+ L
Sbjct: 61 EATYKENKNLQYLKEVKVDYPLQTLHTDIFKSTVVMFLAEVLKSSIQEEEKNESLFQFLK 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
L I + + L +GF D +
Sbjct: 121 ESLIYLDQVDSIKNFHLHFIVKLTSFLGFSPDQSSEAFPYF 161
>gi|222526397|ref|YP_002570868.1| DNA repair protein RecO [Chloroflexus sp. Y-400-fl]
gi|222450276|gb|ACM54542.1| DNA repair protein RecO [Chloroflexus sp. Y-400-fl]
Length = 251
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++ +A+IL + E + +L + T G+ + + + + +
Sbjct: 6 YRSEAVILRRTDFAEADRLLLIATPT-GKRWVIAKGARKMKSRLAGHIELFTHAQMMFAV 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNCH 121
+NL + L + L + L+ L E L+ +L L
Sbjct: 65 GRNLDIVTQSQIVHAFPVLRTDLTRLGCGYYVAELYDRLAAESEENPLLFQLLVETLQAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL LL +G+ L CVV
Sbjct: 125 DGSANPELTLRSFELHLLHILGYRPQLHYCVVCN 158
>gi|163848468|ref|YP_001636512.1| DNA repair protein RecO [Chloroflexus aurantiacus J-10-fl]
gi|163669757|gb|ABY36123.1| DNA repair protein RecO [Chloroflexus aurantiacus J-10-fl]
Length = 256
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++ +A+IL + E + +L + T G+ + + + + +
Sbjct: 11 YRSEAVILRRTDFAEADRLLLIATPT-GKRWVIAKGARKMKSRLAGHIELFTHAQMMFAV 69
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNCH 121
+NL + L + L + L+ L E L+ +L L
Sbjct: 70 GRNLDIVTQSQIVHAFPVLRTDLTRLGCGYYVAELYDRLAAESEENPLLFQLLVETLQAL 129
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL LL +G+ L CVV
Sbjct: 130 DGSANPELTLRSFELHLLHILGYRPQLHYCVVCN 163
>gi|305666028|ref|YP_003862315.1| DNA repair protein [Maribacter sp. HTCC2170]
gi|88710803|gb|EAR03035.1| DNA repair protein [Maribacter sp. HTCC2170]
Length = 239
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 62/218 (28%), Gaps = 12/218 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M AI+L YG+ ++I++ T G ++ + R Q + +
Sbjct: 1 MQVTTKAIVLSSLKYGDTSLIVKAFTLSDGLKSYLLKGVLASRKGKLKTAYFQPLTQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYG-LQSIVPLFRFLPEREPCLELYDMLN 115
+ L R + L S L L + E E L+ +
Sbjct: 61 VANHKNKGTLESIREARVTHQYQTLHSDISKNAITLFLSEMLANSIQEEERNEGLFYYME 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + + + L K +GF D T G+ DLL + + ++
Sbjct: 121 SALQWLDANTEANNFHIYFLIDLTKYLGFYPDTTS--TEGLYFDLLEAEFTNNLTLSPNI 178
Query: 176 GLPYAEKMLVLPSFLWKEEQTI-----DADSLKSAFQL 208
+ I + L + L
Sbjct: 179 KGENLNYFKRFLGINFDTLNKIKMKKANRQELLQSLVL 216
>gi|154505899|ref|ZP_02042637.1| hypothetical protein RUMGNA_03441 [Ruminococcus gnavus ATCC 29149]
gi|153793917|gb|EDN76337.1| hypothetical protein RUMGNA_03441 [Ruminococcus gnavus ATCC 29149]
Length = 276
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 3/213 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + + ++T++ G+ F R + + + ++
Sbjct: 37 TGMVLSTAPVGEYDRRVVILTKEQGKISAFARGARRPNSPLVGAVNPFSFGEFTMYEGRS 96
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ + ++ ++L + YG + + E+ E+ +L +
Sbjct: 97 SHTIQSVKITNYFSELREDMIGAYYGFYFLEFANYYTKEQNDEREMLKLLYQTMKALTSP 156
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY-AEK 182
I EL G G + +CV + S + GG VC
Sbjct: 157 HIPNLLIRRIFELKAFCINGEGPQVFQCVRCQKKDGQMVFSAREGGLVCTDCARNISDGI 216
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
L + + I F ++ L K
Sbjct: 217 SLDNSTLYTMQYIEISTIEKLYTFTVSREVLEK 249
>gi|147677232|ref|YP_001211447.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum
SI]
gi|189039660|sp|A5D3W7|RECO_PELTS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146273329|dbj|BAF59078.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum
SI]
Length = 256
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 4/154 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++ DAI+L R GE + IL + +R++GR R + +Q R R
Sbjct: 4 YKADAIVLRARDCGEGDKILTLYSREHGRIKAMAHGVSKPTSRKRGAVQPFTRSRFLLRR 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V L S + + L L E L + +
Sbjct: 64 GRELDTVSQCEGVET--FPFLRESLERIGYASYVAELVEALTPEGEPNESLFFLLLDVLR 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
+ EL + +G+ L +C
Sbjct: 122 LLAGGDAEMLARAFELKVAALLGYCPVLERCSHC 155
>gi|240172989|ref|ZP_04751647.1| DNA repair protein RecO [Mycobacterium kansasii ATCC 12478]
Length = 265
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ +++ +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSVDAFATDIVNDYGRYTCGCAMLETAERLAGEERAPAPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 120 GALRAVADGRRPRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHIAAGGSVCAH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|145223300|ref|YP_001133978.1| DNA repair protein RecO [Mycobacterium gilvum PYR-GCK]
gi|315443760|ref|YP_004076639.1| DNA replication and repair protein RecO [Mycobacterium sp. Spyr1]
gi|189039659|sp|A4T2B7|RECO_MYCGI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145215786|gb|ABP45190.1| DNA replication and repair protein RecO [Mycobacterium gilvum
PYR-GCK]
gi|315262063|gb|ADT98804.1| DNA replication and repair protein RecO [Mycobacterium sp. Spyr1]
Length = 273
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR++G + + + L+ + V
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVSLLTREHGLVRAVAKGVRRTRSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + +++ + ++S +++ + E
Sbjct: 61 LHP-GRNLDIVTQVQAIDAFASDIVSDYGRYTCACAMLETAERIAGEERAPVPALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ L +C +GG+VC
Sbjct: 120 AALRAVADGTRPRELVLDAYLLRAMGVAGWAPALIECARCAAPGPHRAFHVAAGGSVCVH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|67925437|ref|ZP_00518781.1| Recombination protein O, RecO [Crocosphaera watsonii WH 8501]
gi|67852716|gb|EAM48131.1| Recombination protein O, RecO [Crocosphaera watsonii WH 8501]
Length = 278
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 12/241 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+Q IIL + E + ++ +++ YG V + + + ++ V ++
Sbjct: 5 YQTTGIILKGIPFQEADRLVTLLSPDYGLIRAIVPGARKQKSRLRGRSELFVINELLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ LES+ + + P +E+Y++ N L
Sbjct: 65 GRSLDKITQANTLESYPGLSKDLGKLAAAQYLAELVLNLALDDLPQVEVYELFNEHLRRL 124
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ S+ ++ + LL G G + +C VT + + P G
Sbjct: 125 EKMSLAESLYGYLAQAVFHLLAIAGIGPQVHRCCVTQEELNPNFHDPSWCVGFSFDAGGL 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI-IHCHLLRENFLGKLL 237
++ I + + T LQH + +L
Sbjct: 185 INLRIRDKEK---NNTNPIVLPIINQRLKAT----ELTILQHLNESSLPHPYKILPATIL 237
Query: 238 E 238
+
Sbjct: 238 D 238
>gi|299139030|ref|ZP_07032207.1| DNA repair protein RecO [Acidobacterium sp. MP5ACTX8]
gi|298599184|gb|EFI55345.1| DNA repair protein RecO [Acidobacterium sp. MP5ACTX8]
Length = 249
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 4/153 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
+AI+L + E ++++ TR G+ G R+ R + L+ VR ++ R
Sbjct: 12 EAIVLRTWPFHEADLLISFFTRDQGKVKGVARHAMKSRRRFGGALEPATHVRAHYTERPR 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML-NIFLNCHK 122
Q L + L GLQ +V + + L L +
Sbjct: 72 QELVRLDNFEILWSPLTAPVDYLRTAGLQLVVEVLEEAMPDLAPEDNIFRLALATLTAMQ 131
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
SV + M + +G+ +L C V G
Sbjct: 132 ADSVWLPVTYFCLWMN-RLMGWMPELGHCAVCG 163
>gi|169628765|ref|YP_001702414.1| DNA repair protein RecO [Mycobacterium abscessus ATCC 19977]
gi|238688930|sp|B1MN48|RECO_MYCA9 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|169240732|emb|CAM61760.1| DNA repair protein RecO [Mycobacterium abscessus]
Length = 261
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TRQ+G + + + L+ + V
Sbjct: 1 MRLYRDRAVVLRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTRSKFGSRLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + +++ A ++S +I+ + E +
Sbjct: 61 LHP-GRNLDIVTQVQAIDAFAADIVSDYGRYTTACAILETAERIAGEERAPAVALHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
I + ++ LL+ + G+ + +C +GG+VC
Sbjct: 120 GALRAIADQQRSRELILDAYLLRAMSIAGWAPAIGECARCATPGPHRAFHVAAGGSVCVH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|331091566|ref|ZP_08340403.1| DNA repair protein RecO [Lachnospiraceae bacterium 2_1_46FAA]
gi|330403731|gb|EGG83285.1| DNA repair protein RecO [Lachnospiraceae bacterium 2_1_46FAA]
Length = 260
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 3/213 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L V GE + + ++T++ GR F + + Q + +N
Sbjct: 20 TGIVLSVTPIGEYDKRVVILTKEKGRISAFAKGARRPNSQFGGAVSPFCFGEFTLYEGRN 79
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLNCH-KI 123
+ ++ +L + Y + + + ++ +L K
Sbjct: 80 SYNIMQVHISNYFQELKNDMEATYYGFYFMEFAEYYTREQNDETQMLKLLYQTFRALTKK 139
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY-AEK 182
I EL + G G + +CV G + S + GG +C++
Sbjct: 140 NISNELIRCIYELKAVYINGEGPQVFQCVKCGSADAPVVFSVRQGGIICKNCINEVKDAV 199
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
+ + + + F +++ L K
Sbjct: 200 EIDTSTLYAMQYIAGSSIEKLYTFTVSENVLKK 232
>gi|296166314|ref|ZP_06848751.1| recombination protein O [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898323|gb|EFG77892.1| recombination protein O [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 267
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ +
Sbjct: 3 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDAQ 62
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ ++S +++ L E
Sbjct: 63 LHP-GRNLDIVTQVVSIDAFATDIVSDYGRYTCGCAMLETAERLAGEERAPAPALHRLTV 121
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT+C +GG+VC
Sbjct: 122 SALRAVADGRRSRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHVGAGGSVCTH 181
Query: 175 V 175
Sbjct: 182 C 182
>gi|225021780|ref|ZP_03710972.1| hypothetical protein CORMATOL_01808 [Corynebacterium matruchotii
ATCC 33806]
gi|224945476|gb|EEG26685.1| hypothetical protein CORMATOL_01808 [Corynebacterium matruchotii
ATCC 33806]
Length = 263
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 3/179 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+++ A+++ GE + I+ +T+ G G + + R + LQ + V +
Sbjct: 6 YRECALVIRTYDLGEADRIIVFLTQHRGLVRGVAKGVRRTRSRFGSRLQPFVELDVQFYV 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLN 119
V + + + + + R L E LY ++ L
Sbjct: 66 GRELESVTAADTVGFYGSGIIDNITCYTAASAVLEAAERLSLAHDEHDDRLYPLVVDTLK 125
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L + G+ L C P++GGAVC + P
Sbjct: 126 QLQHAPEPKLRLDTFLLQAMTVAGWAPSLYYCAQCQAPGPHHAFHPRTGGAVCGTCRPP 184
>gi|315606672|ref|ZP_07881683.1| recombination protein O [Prevotella buccae ATCC 33574]
gi|315251682|gb|EFU31660.1| recombination protein O [Prevotella buccae ATCC 33574]
Length = 241
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L GE I++++T + GR R S + + Q L+ +
Sbjct: 1 MLVKTKAIVLHSIKLGESKTIVDMLTERQGRVSFVCRIASSGKAKIKKQFFQPLTLLELE 60
Query: 58 WRSRLAQN-LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ SR + +L + L L+ E + L+ +
Sbjct: 61 YDSRPGRTLRHIGDIRILTPFRTLPFDAFKLSIALFLAEFLYYSTREEQENEPLFAYVEN 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SILWLDGAERAYANFHLVFMMRLSRFIGFFPNLDDY 156
>gi|229820258|ref|YP_002881784.1| DNA repair protein RecO [Beutenbergia cavernae DSM 12333]
gi|259563675|sp|C5C4P4|RECO_BEUC1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229566171|gb|ACQ80022.1| DNA repair protein RecO [Beutenbergia cavernae DSM 12333]
Length = 243
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 8/179 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+A++L GE + IL ++TR +G+ + + S + L+ ++ + +
Sbjct: 4 YRDEAVVLRTHKLGEADRILTLLTRHHGQVRAVAKGVRRTSSKFGARLEPFGVIDLQLYA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ + + + +L+ + R + Y +L L
Sbjct: 64 GRSLDVVTQVDTLAPHGRSIVGDYALYTTATAMVETAERLTEIEREPATQQYLLLVGALR 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+++ G+ T C S GGA+C++
Sbjct: 124 ALAERAHAPTLV--LDSYLLRSLAVAGWAPTFTDCARCSREGPHRAFSAPMGGALCQAC 180
>gi|116670772|ref|YP_831705.1| DNA repair protein RecO [Arthrobacter sp. FB24]
gi|116610881|gb|ABK03605.1| DNA replication and repair protein RecO [Arthrobacter sp. FB24]
Length = 256
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 8/212 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L GE + I+ ++T+ +G+ + + S R L+ + + S
Sbjct: 17 YRDDAVVLRTHKLGEADRIITLLTKHHGQVRAVAKGVRRTSSRFGARLEPFMVADLQLIS 76
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + + Y++L L
Sbjct: 77 GRTLDVVTQAVAKGAYGGNIAADYGRYTVAAAMTETAEKLTDVDGEAGTAQYNLLVGALA 136
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ ++ LL+ + G+ T C G S GG VC +
Sbjct: 137 SLSRGEHTPEL--ILDSYLLRALATGGWAPSFTVCARCGAPGPHTAFSAPLGGMVCSNCR 194
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
P + FL T D + ++ L
Sbjct: 195 PPGSPAPAAETVFLLGALLTGDWTTADTSLAL 226
>gi|302528829|ref|ZP_07281171.1| DNA repair protein RecO [Streptomyces sp. AA4]
gi|302437724|gb|EFL09540.1| DNA repair protein RecO [Streptomyces sp. AA4]
Length = 258
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 68/180 (37%), Gaps = 6/180 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++T+++G+ + + S R L+ V V +
Sbjct: 5 YRDTGVVLRTHKLGEADRIVTLLTKRHGKVRAVAKGVRRTSSRFGARLEPFGHVDVQFYP 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL--ELYDMLNIFL 118
+ ++ + E +++ L++ +I L E +LY ++ L
Sbjct: 65 GRSLDV-ITQVETVDAFALPLVADYQRYTAASAIAETADRLSAEEGEPVLKLYLLVVGAL 123
Query: 119 NCHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ L + G+ +T+C G+ + +GG++C +
Sbjct: 124 RALAGGQRDASLVLDAFFLRAMAYAGWAPAITECARCGLPGPHAAFNVAAGGSMCPDCRI 183
>gi|163856076|ref|YP_001630374.1| DNA repair protein RecO [Bordetella petrii DSM 12804]
gi|163259804|emb|CAP42105.1| DNA repair protein RecO [Bordetella petrii]
Length = 195
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 6/143 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQ 64
A +L ++ E ++I++ +R++G + + +P+L A + ++W
Sbjct: 13 AYMLHATAWRETSLIVQSFSREHGCVALVAKGAKRPYSVLRPVLSAFQPLLLSWSGAGEV 72
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
E + L+ + + L R LP + L+D + L
Sbjct: 73 KT----LTRAEVAGLRPLAGTALMSAWYMNELLLRLLPREDAHPALFDAYDTALQQLAGG 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLD 147
+ + E LL+ G+G+D
Sbjct: 129 TRAAGALRRFEWTLLRETGYGID 151
>gi|320354704|ref|YP_004196043.1| DNA repair protein RecO [Desulfobulbus propionicus DSM 2032]
gi|320123206|gb|ADW18752.1| DNA repair protein RecO [Desulfobulbus propionicus DSM 2032]
Length = 256
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 4/149 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
+L + +GE + ++ + +R GR G + + + + + + + R +
Sbjct: 9 GFVLKIAEHGESDKLVTLYSRDVGRMTGIAKGARKSKQRFVNKLELFSSLKVLYRPPRVH 68
Query: 67 GEFRFEV----LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
G L + L + + RF E +P LY++L L+
Sbjct: 69 GGLHVLDDAELLNARLPLRLEYRRYAVAIHLSELFLRFTRENDPDAHLYELLRWTLDLLS 128
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ KI V L LL G+ +L +C
Sbjct: 129 VDKAPLKIMVFSYLHLLAASGYRPELDRC 157
>gi|87310533|ref|ZP_01092662.1| probable DNA repair protein recO [Blastopirellula marina DSM 3645]
gi|87286754|gb|EAQ78659.1| probable DNA repair protein recO [Blastopirellula marina DSM 3645]
Length = 250
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+ I++ + + E + I + T +G+ G + + + + +L R+ + +
Sbjct: 5 KTTGIVIRIVEFSESSCITTLFTEDFGKISGIAKGCRRPKSAFESAIDLLSLCRIVFLHK 64
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +L L + S G L F E +P EL+ + + L
Sbjct: 65 TSDSLDILTEAKLLRKFRSAQRSLPHLYAGYYIAELLGEFTHESDPYAELFHIADQTLAE 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ K+ + EL LL+ +G +L+ CV TG
Sbjct: 125 LDGGGNVPKLVLHFELSLLRLLGQLPELSFCVDTG 159
>gi|84390106|ref|ZP_00991368.1| DNA repair protein RecO [Vibrio splendidus 12B01]
gi|86146357|ref|ZP_01064681.1| DNA repair protein RecO [Vibrio sp. MED222]
gi|84376760|gb|EAP93635.1| DNA repair protein RecO [Vibrio splendidus 12B01]
gi|85835836|gb|EAQ53970.1| DNA repair protein RecO [Vibrio sp. MED222]
Length = 207
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 11/205 (5%)
Query: 35 FVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ 92
+ +S R + LQ + + W + + + L+ +
Sbjct: 1 MSKGARSKRSNLKGALQPFTPLLLKWSGNGS---MKTLRQAEPISLGLPLAGINLYSAMY 57
Query: 93 SIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCV 152
+ R L + L + EL LL +G+G+D C
Sbjct: 58 VNELVGRVLMAEVAMPAFFHDYLHALTELAHNENPEPALRRFELALLSAMGYGVDFLHCA 117
Query: 153 VTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYF 212
TG D + + E + I + LK+A + T
Sbjct: 118 GTGEAIDPSMTYRYREQKGFIASVRRDNLTFMGDELIAISERRFITKEQLKAAKRFT--- 174
Query: 213 LNKYALQHNIIHCH-LLRENFLGKL 236
+ AL+ + RE F+ +
Sbjct: 175 --RIALKPYLGGKPLKSRELFMPTI 197
>gi|148272759|ref|YP_001222320.1| DNA repair protein /recombination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830689|emb|CAN01629.1| DNA repair protein /recombination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 309
Score = 79.9 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 4/183 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+ ++L GE + I+ +++RQ+G+ + + + L+ + +
Sbjct: 4 YRDEIVVLRTHKLGEADRIVTMLSRQHGKIRAVAKGVRRTQSKFGARLEPFMVADAQFFE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + E + S+ A + + ++V + E E L+ Y +L L
Sbjct: 64 GRTLDI-ITQAESIASYGALIAADYGSYTAASAMVETADRVTEDEGSLQQYLLLVGALRS 122
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L L G+ C VTG + GG V + P
Sbjct: 123 LSRHEHGASLTLDSYLLRSLSMAGWAPSFQDCAVTGAPGPHSAFVVQLGGVVADAAAPPG 182
Query: 180 AEK 182
+ +
Sbjct: 183 SPR 185
>gi|158521720|ref|YP_001529590.1| DNA repair protein RecO [Desulfococcus oleovorans Hxd3]
gi|226737861|sp|A9A0L3|RECO_DESOH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|158510546|gb|ABW67513.1| DNA repair protein RecO [Desulfococcus oleovorans Hxd3]
Length = 260
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 11/196 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ AIIL +Y E + IL+++T + GR +N + + + IL+ + +
Sbjct: 4 FSSPAIILRRTAYAEYDTILDLLTLERGRITAMAKNARKSKKRFAGILEPFCCLDAVFTD 63
Query: 61 RLAQNLGEF--RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
A++ + A L+ Y + R++ E + L+ +L+ L
Sbjct: 64 PSARSGMTILKEAAMTAPFGAIRLNMEKVAYASYWSEMVNRWVKEDDTQSALFHLLHYVL 123
Query: 119 NCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD------LLWVSPKSGGAV 171
+ + ++ + G + C V D L++ GG V
Sbjct: 124 FMLDSGKASHADLSILFQVRFMTLAGLFPGMAACRVCKTEIDRLSGSPTLYLDIARGGIV 183
Query: 172 CRSVGLPYAEKMLVLP 187
C G A P
Sbjct: 184 CHRCGGEGAGSQYRKP 199
>gi|325285977|ref|YP_004261767.1| DNA repair protein RecO [Cellulophaga lytica DSM 7489]
gi|324321431|gb|ADY28896.1| DNA repair protein RecO [Cellulophaga lytica DSM 7489]
Length = 239
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 5/222 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR----MQPILQAGNLVRV 56
M AI+L YG+ ++I++ T G ++ S + Q + +
Sbjct: 1 MQVTTKAIVLSALKYGDNSLIVKAYTLSDGLKSYLLKGVLSSKKGKVKAAYFQPLTQLEL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLN 115
+ L R H L S+ L L E EP L++ +
Sbjct: 61 IAVHKNKGTLESVREAKTSYHYQTLHSNIAKNAMTQFLAEMLSNSLLEEEPNENLFNYIE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L S I + L + K +GF D + K
Sbjct: 121 AALQWLDTESQIANFHLHFLLSITKYLGFYPDSKNNSFLYFDLLEGGFTNKPSLNPVIQG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
K + +F ++ + + + +
Sbjct: 181 TNLNYFKTFLGINFDAIHTIKMNKTDRQELLKSLILYFELHL 222
>gi|110597274|ref|ZP_01385562.1| DNA repair protein RecO [Chlorobium ferrooxidans DSM 13031]
gi|110341110|gb|EAT59578.1| DNA repair protein RecO [Chlorobium ferrooxidans DSM 13031]
Length = 284
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ A+IL Y +++ I + TR++G+ ++ ++ + + + AGN+V V
Sbjct: 25 IVKTRAVILREVKYRDQSKICALYTREFGKISVIIKGARNPKNKLSGLFSAGNVVDVVLY 84
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFL 118
+ ++++ L L I+ L R E L L+ +L L
Sbjct: 85 KKQSRDIQLVSDGNLVLSPMVPDPDMERFAVLYQIIDLIRTGTESDEKNLPLFTLLAGTL 144
Query: 119 NCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ ++ L L+ +GF L+ CV +G
Sbjct: 145 QQLYRSGVNFRQLHAWFLLRLVSLMGFQPLLSNCVFSG 182
>gi|258516215|ref|YP_003192437.1| DNA repair protein RecO [Desulfotomaculum acetoxidans DSM 771]
gi|257779920|gb|ACV63814.1| DNA repair protein RecO [Desulfotomaculum acetoxidans DSM 771]
Length = 244
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 4/154 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++ +A++L R E + +L + +RQ+G+ S R + +Q
Sbjct: 4 YKAEAVVLRTRELREADKLLVLYSRQHGKITVAAHGVSKPSSRKRGSVQPFCHTNFLLHK 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V A L S+ L +V L E +L + +
Sbjct: 64 GRQLDSVSQCDGVE--IFAHLRSNFELLSCASYLVELVEAFSVEGDPNEYVFLLLVSIFH 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
P + E+ LL GF CV
Sbjct: 122 LLNPLDAELLTRAFEIKLLTVFGFRPHWESCVHC 155
>gi|288925539|ref|ZP_06419472.1| DNA repair protein RecO [Prevotella buccae D17]
gi|288337755|gb|EFC76108.1| DNA repair protein RecO [Prevotella buccae D17]
Length = 241
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L GE I++++T + GR R S + + Q L+ +
Sbjct: 1 MLVKTKAIVLHSIKLGESKTIVDMLTERQGRVSFVCRIASSGKAKIKKQFFQPLTLLELE 60
Query: 58 WRSRLAQN-LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ SR + +L + L L+ E + L+ +
Sbjct: 61 YDSRSGRTLRHIGDIRILTPFRTLPFDAFKLSIALFLAEFLYYSTREEQENEPLFAYVEN 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SILWLDGAERAYANFHLVFMMRLSRFIGFFPNLDDY 156
>gi|260591753|ref|ZP_05857211.1| DNA repair protein RecO [Prevotella veroralis F0319]
gi|260536037|gb|EEX18654.1| DNA repair protein RecO [Prevotella veroralis F0319]
Length = 241
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L +GE ++I+++ T Q GR R ++ + + Q L+ +
Sbjct: 1 MILKSKAIVLRSMKFGEASLIIDMFTEQEGRISFITRIAKTAKGKIKKQYFQPLTLLELE 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R +L + + + + L L+ + L+LY+ +
Sbjct: 61 FDYRPRTSLQHIKEVRILYPYASIPFDPIKSAILLFLSEFLYHVTRSEQQNLQLYNYVCT 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
L + + L + IGF +L
Sbjct: 121 SLQWLDGAARSYANFHLVFMMRLSRFIGFFPNLEAY 156
>gi|108804341|ref|YP_644278.1| DNA repair protein RecO [Rubrobacter xylanophilus DSM 9941]
gi|122381777|sp|Q1AVW2|RECO_RUBXD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|108765584|gb|ABG04466.1| DNA repair protein RecO [Rubrobacter xylanophilus DSM 9941]
Length = 248
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 3/155 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ I+L YGE + IL++ TR G + + R + + V++ R
Sbjct: 4 YRSRGIVLRSIRYGEADRILDIYTRDAGLVSCIAKGIRRTRSRFGARLEPFSCVDFMAYR 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E L S + L P +++L L+
Sbjct: 64 GRTLDTITQAESLRSFRGVRERLDRLQAAAGMA-GVLHALSGGTPDRRTFNLLYRALDAL 122
Query: 122 KIPSVIGKIFVQIELMLLKNI-GFGLDLTKCVVTG 155
+ + + L + G+ L C G
Sbjct: 123 EKGEEGFGMIEASFGLKLAVLSGYAPRLDGCAECG 157
>gi|269468622|gb|EEZ80266.1| recombinational DNA repair protein, RecF pathway [uncultured SUP05
cluster bacterium]
Length = 207
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 64/212 (30%), Gaps = 10/212 (4%)
Query: 22 LEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKL 81
++ +T+++G+ + + + +Q + +++ + K
Sbjct: 1 MDFLTKEHGKIRLIAKGIRKSKTN--IQMFQCLNISFVGKGELKTLTNWEVDDVPRHLKS 58
Query: 82 LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKN 141
+ L +Y + I L + E+Y + K S + E LL
Sbjct: 59 EALILSMYVNELISRLLQEQDPHVELFEIYKKFVNQVGSLKQDSRH-WLLRMFENNLLAE 117
Query: 142 IGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
+G+ +D V + +S + K+L + +
Sbjct: 118 LGYAVDFVVDVNGNEISQNSSYEYQQQAGFSQSSTGKISGKLLHQ----LSAGDVENRPN 173
Query: 202 LKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L+ + LN+ L + + R F
Sbjct: 174 LEQ-LKACRD-LNRQRLNPLLGNKPLKSRSLF 203
>gi|312130734|ref|YP_003998074.1| DNA repair protein reco [Leadbetterella byssophila DSM 17132]
gi|311907280|gb|ADQ17721.1| DNA repair protein RecO [Leadbetterella byssophila DSM 17132]
Length = 228
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 5/164 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----V 56
M + I+L Y E +II ++ T ++G +S + + + + V
Sbjct: 1 MLHKTRGIVLNYIKYRETSIIAKIYTEEFGLQSYVENGVRSPKSKGRIALFQPLNLVDLV 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ A + G+ L L E L+ L
Sbjct: 61 VYFKPQADIQRISEIKCTHPFFNIPTDIRKTTLGIFVGEILVLTLKENAGNPLLFSFLQE 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
L + + + + L +GFG + + + ++
Sbjct: 121 ALIHLEHQDEGVENFHLYFLMTLSAYLGFGPHTAQDIRMALAEN 164
>gi|40063136|gb|AAR37983.1| DNA repair protein RecO [uncultured marine bacterium 561]
Length = 259
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 11/208 (5%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH----RMQPILQAGNLVRVNWRS 60
+ A +L R+YG+ +++++ GR V+ G+ +LQ + V
Sbjct: 6 EPAWLLHRRNYGDSGFLVDILGLNSGRISAVVKGGRRKARGGSFAGVLQPFTPLLVATSG 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + L+ G L R LP+ C L+ + ++
Sbjct: 66 RGELKT---LSRLELAGAGVELAGERVFSGFYLNELLVRLLPKFVSCPTLFALYGGTIDA 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL--- 177
+ + + ELMLL+ +G+GL +
Sbjct: 123 L-VATEAELDLRKFELMLLEELGYGLRFDMDANNDPIEAANAYLYDPTAGFLPRAFGFDD 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ ++ + L +
Sbjct: 182 AWKKESRLQGDQLLNMADWLFNGDGLDG 209
>gi|150024377|ref|YP_001295203.1| DNA repair protein RecO [Flavobacterium psychrophilum JIP02/86]
gi|254790522|sp|A6GWB0|RECO_FLAPJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|149770918|emb|CAL42383.1| DNA repair protein RecO [Flavobacterium psychrophilum JIP02/86]
Length = 238
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M + AI++ Y EK++I++ T G FVR+ S + Q ++ +
Sbjct: 1 MQIKTKAIVISAIKYQEKSLIVKCFTLSDGLKSYFVRDAFSSKKSNQKIAYFQPLTILEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLN 115
+ L F+ + + + + + I L + E E + L
Sbjct: 61 EAVHKNKGTLERFKEVKIATPFHSIHYDVIKSTIVIFISEILHHSIHEEEKNEAFFTFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L+ I + + L K +GF D++
Sbjct: 121 TALHWLDNHDQIANFHLILLLETTKYLGFYPDISN 155
>gi|293390945|ref|ZP_06635279.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290951479|gb|EFE01598.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 108
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLG 67
L +SY E +++++++T +GR + ++ R + +LQ + + W R +
Sbjct: 2 LHRKSYSETSLLIDLLTEDFGRISVLAKGARAKRSMLKGVLQPFTPLLLRWSGRGELKIL 61
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ A L ++ G + R L +L+
Sbjct: 62 TKAEP---AAIALPLQNTALYSGFYLNELICRVLEPETAYPQLFQQYLQC 108
>gi|332652576|ref|ZP_08418321.1| DNA repair protein RecO [Ruminococcaceae bacterium D16]
gi|332517722|gb|EGJ47325.1| DNA repair protein RecO [Ruminococcaceae bacterium D16]
Length = 251
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 2/181 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M+ A++L +Y E + IL ++T++ G+ R + + LV ++
Sbjct: 3 MHLHTKALVLRETAYKESDKILTLLTQEQGKITASARGCRRKGSPLAAGSQLLVWSDFIL 62
Query: 61 RLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
Q + +E F G E P EL ++ L+
Sbjct: 63 YEYQGRWSVKEAEVEREFRGMREDLDKFSLGCYFGEVTQALALEGLPSPELLSLILNSLH 122
Query: 120 CHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ EL + G+ L C V G + + G C
Sbjct: 123 ALDRLDRPLALVKGAFELRAMCLAGYEPVLDACAVCGCQPEEPRFHLREGVLHCARCRGE 182
Query: 179 Y 179
Sbjct: 183 V 183
>gi|256847127|ref|ZP_05552573.1| DNA repair protein RecO [Lactobacillus coleohominis 101-4-CHN]
gi|256715791|gb|EEU30766.1| DNA repair protein RecO [Lactobacillus coleohominis 101-4-CHN]
Length = 259
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 9/204 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
II+ R Y E++ +++++T + G + VR + +M + R +
Sbjct: 10 GIIMNRRDYRERDQLVKILTDKQGPSMFLVRGARRKNFKMAADILPFTHGRYVSWLSSDR 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + Y + + R + Y + L+
Sbjct: 70 LNYIVAAQETHQFRNIGDDITANAYATFILELVDRAFEDGHDIGAWYGQILAALHLINDG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
I +E+ LL G + CV+ G Q L+ S GG +C + +
Sbjct: 130 QDPQVIANVLEVQLLGRFGVMPEWRHCVICGQNQKLMDYSEAYGGLLCVNH---WDH--- 183
Query: 185 VLPSFLWKEEQTIDADSLKSAFQL 208
P L + +TI+ + L
Sbjct: 184 -DPHRLHLDAKTINYLRFFATLNL 206
>gi|116492865|ref|YP_804600.1| DNA replication and repair protein RecO [Pediococcus pentosaceus
ATCC 25745]
gi|122265671|sp|Q03F64|RECO_PEDPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116103015|gb|ABJ68158.1| DNA replication and repair protein RecO [Pediococcus pentosaceus
ATCC 25745]
Length = 253
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 88/246 (35%), Gaps = 20/246 (8%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
I++ RS+ E +++++ +T+++G+ + F+RN + +++ + + + R
Sbjct: 11 GIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHGQYTGLIRSNG 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ +L Y + + + ++ +N L
Sbjct: 71 LSYINAALDVQQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERINRALILIDAG 130
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ I I++ LL + G + CV+ G T L S GG +C+S +
Sbjct: 131 NDAEIITDLIQIQLLNSFGISITWDHCVICGRTDLPLDYSEAFGGMLCQSHWERDEHRWH 190
Query: 185 VLPS------------FLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ P + +I ++ + + LT I+ R F
Sbjct: 191 LKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQV----GINL-KSRS-F 244
Query: 233 LGKLLE 238
+ ++ +
Sbjct: 245 IDQMKK 250
>gi|315038511|ref|YP_004032079.1| DNA repair protein recO [Lactobacillus amylovorus GRL 1112]
gi|325956927|ref|YP_004292339.1| DNA repair protein recO [Lactobacillus acidophilus 30SC]
gi|312276644|gb|ADQ59284.1| DNA repair protein recO [Lactobacillus amylovorus GRL 1112]
gi|325333492|gb|ADZ07400.1| DNA repair protein recO [Lactobacillus acidophilus 30SC]
gi|327183707|gb|AEA32154.1| DNA repair protein recO [Lactobacillus amylovorus GRL 1118]
Length = 250
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 2/178 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + + N + + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIITLIVKGALRPKSRLSAATLNFSMGTYVIYTSGH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + E +P + YD+ L
Sbjct: 69 GLSNLRTYKEVKQFDGLYQDLTKNAYASFIFDLIDHAFVEYQPIGKYYDLALFALKKINE 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I +++ +L G +L CV+ G + + S K GG +C
Sbjct: 129 GVDCEMITQIVQMKMLSAYGVEPELRHCVICGKEKGIFDYSIKLGGVICSDHFGVVNS 186
>gi|158313952|ref|YP_001506460.1| DNA repair protein RecO [Frankia sp. EAN1pec]
gi|158109357|gb|ABW11554.1| DNA repair protein RecO [Frankia sp. EAN1pec]
Length = 262
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L + E + ++ V+TR+ GR R + S R L+ G V +
Sbjct: 23 YRDEGVVLRTAPFAEADRVVTVLTRRNGRVRAVARGVRRTSSRFGARLEPGTHVDLQLHE 82
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++L ++ A + ++ L E L L +
Sbjct: 83 GRSLDT-VTQADILGAYGATIAQEYARYTAAAVMLETAERLTSEERQPALRLFLLLVGGL 141
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+++ G+G+ L +C + G +S GG VC
Sbjct: 142 RTLAGGERPPSLVLDAFLLRSLAVSGYGMALDECALCGEPGPHHSLSVPGGGVVCPEC 199
>gi|170782100|ref|YP_001710433.1| DNA repair protein RecO [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156669|emb|CAQ01827.1| DNA repair protein RecO [Clavibacter michiganensis subsp.
sepedonicus]
Length = 309
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 4/183 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+ ++L GE + I+ +++RQ+G+ + + + L+ + +
Sbjct: 4 YRDEIVVLRTHKLGEADRIVTMLSRQHGKIRAVAKGVRRTQSKFGARLEPFMVADAQFFE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + E + S+ A + + ++V + E E L+ Y +L L
Sbjct: 64 GRTLDI-ITQAESIASYGALIAADYGSYTAASAMVETADRVTEDEGSLQQYLLLVGALRS 122
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ L L G+ C VTG + GG V + P
Sbjct: 123 LSRREHGASLTLDSYLLRSLSMAGWAPSFQDCAVTGAPGPHSAFVVQLGGVVADAAAPPG 182
Query: 180 AEK 182
+ +
Sbjct: 183 SPR 185
>gi|299783169|gb|ADJ41167.1| DNA repair protein recO (Recombination protein O) [Lactobacillus
fermentum CECT 5716]
Length = 255
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLA 63
+ +I+ R Y E++++++++T + G + FVR + ++ +
Sbjct: 9 EGVIMYRRDYRERDLLVKILTDRCGPLMFFVRGAKRKGFKLASDILPFTYGSYVGILADE 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + Y + + + E Y + LN
Sbjct: 69 GLSYIVSAQETHHLTGIGADLNRNAYATYLLELVDQAFEEGRALGGWYKQVMAALNLINT 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ +E+ LL G +CVV G + L S K GG +C +
Sbjct: 129 GRDPQVVVNVLEVQLLNRFGIAPVWDRCVVCGRSDLPLDYSEKMGGMLCLHHFAEDPYRF 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLTPK 193
>gi|221068686|ref|ZP_03544791.1| DNA repair protein RecO [Comamonas testosteroni KF-1]
gi|220713709|gb|EED69077.1| DNA repair protein RecO [Comamonas testosteroni KF-1]
Length = 259
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 8/155 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A IL + E ++ILEV TR GR + + +P+L +++++
Sbjct: 9 DEPAYILHQYDWSESSLILEVFTRHRGRVALAAKGVKRHTSNFRPVLLPLQPLKLSYTLG 68
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
N + + + G+ L R L +P L+D+ +
Sbjct: 69 AEGNAEIHTLKGAEWAGGHVMPQGDALWSGMYLNELLLRLLARDDPYAALFDIYAGVVRV 128
Query: 121 HKIPSV-----IGKIFVQIELMLLKNIGFGLDLTK 150
I + EL+LL+ +G DL +
Sbjct: 129 LAGQHGGTTEAIEPVLRAFELVLLRELGHLPDLRQ 163
>gi|254785339|ref|YP_003072768.1| DNA repair protein RecO [Teredinibacter turnerae T7901]
gi|237685975|gb|ACR13239.1| DNA repair protein RecO [Teredinibacter turnerae T7901]
Length = 236
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 7/188 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI-LQAGNLVRVNWRSRL 62
Q+ +L RS+ + IILE+ TRQ+G+ R R Q + V++
Sbjct: 7 QEVGFLLHSRSFTDSRIILELFTRQHGKLKAVHRLPSRKRQATTKPQPFIPLVVHYSGSG 66
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ L + + GL L + LP L+ L
Sbjct: 67 ELKN---LSDLETLSAPILGAGTSLFCGLYLNELLQKLLPVEFEYAGLFASYQRALLSLS 123
Query: 123 IPSVIGKIFVQ--IELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLPY 179
+ EL LL +G+G++ + + + L
Sbjct: 124 QAVPGEEDIPLREFELQLLAELGYGINFSMDTLGEAIGCNSERFYRFDPADGFTPTALNN 183
Query: 180 AEKMLVLP 187
+ L+
Sbjct: 184 DRRALICS 191
>gi|332981251|ref|YP_004462692.1| DNA repair protein RecO [Mahella australiensis 50-1 BON]
gi|332698929|gb|AEE95870.1| DNA repair protein RecO [Mahella australiensis 50-1 BON]
Length = 244
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 2/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ +AI+L Y E + IL + +++ G+ + + + + ++ + V ++
Sbjct: 4 IKTEAIVLKHMDYLEADRILVLFSKELGKIHAIAKGSRRPKSRFLMASEIFVLADYMLYE 63
Query: 63 AQNLGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+NL ++ +L + Y + + + EP ++ Y +L L
Sbjct: 64 GKNLYTVTQSEVKCTFFELRQNMNNLAYAAYATNLCDAVIQDAEPNIKAYYLLLKTLQFL 123
Query: 122 KIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
P+ + + + L+ IG+ L +C G
Sbjct: 124 SEPNTDASSLALIFAIKLMDFIGYRPLLDQCCDCGSDN 161
>gi|255656414|ref|ZP_05401823.1| DNA repair protein [Clostridium difficile QCD-23m63]
gi|296878520|ref|ZP_06902525.1| recombination protein O [Clostridium difficile NAP07]
gi|296430327|gb|EFH16169.1| recombination protein O [Clostridium difficile NAP07]
Length = 257
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 4/188 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M I+L Y E +IIL + TR+ G+ + + ++ + + N+
Sbjct: 1 MIILNTQGIVLKAIRYKESDIILTLFTRKLGKVSAIAKGAKKNKSSLLSSSQLFSYSNFT 60
Query: 60 -SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + E+++S F Y + + E + L+ +L L
Sbjct: 61 LKKQGNMYKVTQSEIIKSFYNISYDIEAFSYATYITKLVENSILENQTNNRLFILLAQTL 120
Query: 119 NCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVG 176
+ + I EL L IGF + KC+ + GG +C
Sbjct: 121 YLYTQDNTDNRFITAAFELKFLDYIGFKPIVNKCINCECKILQNSVFNIYEGGILCSKCS 180
Query: 177 LPYAEKML 184
+ +
Sbjct: 181 KLFDNNIK 188
>gi|152967319|ref|YP_001363103.1| DNA repair protein RecO [Kineococcus radiotolerans SRS30216]
gi|151361836|gb|ABS04839.1| DNA repair protein RecO [Kineococcus radiotolerans SRS30216]
Length = 269
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 4/182 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+A++L GE + I+ ++TR +GR + + S R L+ V V
Sbjct: 20 YRDEAVVLRTAKLGEADRIVSLLTRHHGRVRAVAKGVRRTSSRFGARLEPFTCVDVQLHR 79
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ + + + L+ G + RF + Y +L L
Sbjct: 80 GRSLDTVTQADVLAPYGQVLVADYGLYTVGHALLETAERFTEVERETATQQYLLLVGALR 139
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L L G+ C G + +GGAVC S P
Sbjct: 140 SLSRREHDASLVLDAYLLRSLAVAGYAASFGDCARCGEAGPHAAFNVSAGGAVCPSCRPP 199
Query: 179 YA 180
+
Sbjct: 200 GS 201
>gi|126700051|ref|YP_001088948.1| DNA repair protein [Clostridium difficile 630]
gi|119361453|sp|Q182C0|RECO_CLOD6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|115251488|emb|CAJ69321.1| DNA repair protein RecO (Recombination protein O) [Clostridium
difficile]
Length = 257
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 4/188 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M I+L Y E +IIL + TR+ G+ + + ++ + + N+
Sbjct: 1 MIILNTQGIVLKAIRYKESDIILTLFTRKLGKVSAIAKGAKKNKSSLLSSSQLFSYSNFT 60
Query: 60 -SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + E+++S F Y + + E + L+ +L L
Sbjct: 61 LKKQGNMYKVTQSEIIKSFYNISYDIEAFSYATYITKLVENSILENQTNNRLFILLAQTL 120
Query: 119 NCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVG 176
+ + I EL L IGF + KC+ + GG +C
Sbjct: 121 YLYTQDNTDNRFITAAFELKFLDYIGFKPIVNKCINCECKILQNSVFNIYEGGILCSKCS 180
Query: 177 LPYAEKML 184
+ +
Sbjct: 181 KLFDNNIK 188
>gi|260893580|ref|YP_003239677.1| DNA repair protein RecO [Ammonifex degensii KC4]
gi|260865721|gb|ACX52827.1| DNA repair protein RecO [Ammonifex degensii KC4]
Length = 246
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 3/155 (1%)
Query: 1 MYWQ-DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M W + ++L V E + +L + + + G+ L G R + R +
Sbjct: 1 MQWSCAEGVVLRVSPVREADRLLTIFSLERGKLLATAFGGARPRSRKRAATLPFCRARFF 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + L L L Y + F P EP LY +L L
Sbjct: 61 LKRRGDNYQVDQAELLERFPGLAHPRLLGYAGYLAEVVEGFSPLEEPNAPLYRLLVSSLR 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
+ + + LL+ G ++T C
Sbjct: 121 WLRQNPELVAQAFCL--KLLRLGGLAPEMTACSSC 153
>gi|284030386|ref|YP_003380317.1| DNA repair protein RecO [Kribbella flavida DSM 17836]
gi|283809679|gb|ADB31518.1| DNA repair protein RecO [Kribbella flavida DSM 17836]
Length = 256
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 4/177 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+AI+L + GE + I ++TR +G+ V+ + S R L+ + V + +
Sbjct: 4 YRDEAIVLRTQKLGEADRIATLLTRTHGKLRAVVKGVRRTSSRFGARLEPFSHVDLQLAT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
+ ++ + + + + G + + R + E + + + +L L
Sbjct: 64 GRSLDVVTQAVSIAAYGEGIVSDYARYTTGTVLLETVDRLVVEEKEPATQQHLLLAGALR 123
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
++ L L G+ C G +P +GG VC +
Sbjct: 124 VLSTGEREPRLVLDSFLLRSLAISGYAPSFGDCAKCGEPGPHRAFNPAAGGMVCTTC 180
>gi|309811037|ref|ZP_07704835.1| DNA repair protein RecO [Dermacoccus sp. Ellin185]
gi|308435001|gb|EFP58835.1| DNA repair protein RecO [Dermacoccus sp. Ellin185]
Length = 269
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 3/193 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D AI+L GE + I+ ++TR G+ + + + + L+ G +V +
Sbjct: 5 YRDAAIVLRTHKLGEADRIITMLTRNRGKKRAVAKGVRKTKSKFGARLEPGMVVDIQLHE 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + A + + R + + + +++L L
Sbjct: 65 GRNLDVVTQVDLLASYGDAIAQDYPSYTACAAMLETADRLCEDSDRVVAHFNLLAGALAA 124
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + + + G+ C G + GGAVC P
Sbjct: 125 LAQRQIPAHLVLDAYLVRSVATAGWTPSFIDCAGCGDPGPQRAFNLAVGGAVCPQCRPPG 184
Query: 180 AEKMLVLPSFLWK 192
+ + L
Sbjct: 185 STAPMPETFVLMD 197
>gi|257055406|ref|YP_003133238.1| DNA repair protein RecO [Saccharomonospora viridis DSM 43017]
gi|256585278|gb|ACU96411.1| DNA replication and repair protein RecO [Saccharomonospora viridis
DSM 43017]
Length = 283
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 71/183 (38%), Gaps = 6/183 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++TR++G+ + + R L+ V V + +
Sbjct: 4 YRDTGVVLRGHKLGEADRIITLLTRRHGKVRAVAKGVRRTTSRFGARLEPFGHVDVQFYT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + E +++ ++ +I L E L L +
Sbjct: 64 GRTLDV-ITQVETVDAFALPIVGDYQRYTAASAITETADRLTAEEGQPALKLYLLVVGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+++ G+ +T+C G + ++GG++C +
Sbjct: 123 RALAEGRRDASLVLDAFLLRSMAFAGWAPAITECARCGQPGPHGAFNVQAGGSLCSRCRV 182
Query: 178 PYA 180
P +
Sbjct: 183 PGS 185
>gi|319952749|ref|YP_004164016.1| DNA repair protein reco [Cellulophaga algicola DSM 14237]
gi|319421409|gb|ADV48518.1| DNA repair protein recO [Cellulophaga algicola DSM 14237]
Length = 239
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M AI+L YG+ ++I+++ T G ++ + + Q + +
Sbjct: 1 MQVTTKAIVLSALKYGDTSLIVKIFTASDGLKSYLLKGVFASKKGKLKTAYFQPLMQLEL 60
Query: 57 NWRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L R + + + + L + E E L++ L
Sbjct: 61 VAYHKNKGTLETVREAKPSYHYQSLHTDITKNALTFFLAEMLSNSIQEEEDNANLFEFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLD 147
L I + ++L K GF D
Sbjct: 121 ASLQWLDANEEISNFHLYFLILLTKYFGFYPD 152
>gi|126658910|ref|ZP_01730053.1| DNA repair protein RecO [Cyanothece sp. CCY0110]
gi|126619860|gb|EAZ90586.1| DNA repair protein RecO [Cyanothece sp. CCY0110]
Length = 279
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 13/236 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRS 60
+Q IIL + E + ++ +++ +YG V + + + + V +
Sbjct: 5 IYQATGIILKGMPFQEADRLVTLLSPEYGLIRAIVPGARKQKSKLRGRCELFVINELLIA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E LES+ + + +P LELY++LN L
Sbjct: 65 KGRSLDKITQAETLESYPGLSKDLGKLAAAQYLAELVLNLALDEQPQLELYELLNEHLRR 124
Query: 121 HKIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTG-----VTQDLLWVSPKSGGAVC 172
+ S+ ++ + LL G G + C +T D W S A
Sbjct: 125 LERMSLAESLYGYLAQAVFHLLAIAGIGPQVHYCCITQEELSPNFNDPSWCVGFSFDAGG 184
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
++ + I+ S L + LN+ L H
Sbjct: 185 LINLAIRDKEKNNPNPIVLP---VINHRLKASELTLLQH-LNQSFLPHPGKILPSN 236
>gi|320095930|ref|ZP_08027551.1| DNA repair protein RecO [Actinomyces sp. oral taxon 178 str. F0338]
gi|319977139|gb|EFW08861.1| DNA repair protein RecO [Actinomyces sp. oral taxon 178 str. F0338]
Length = 207
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 4/202 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++T ++G+ + + S + L+ ++V V
Sbjct: 5 YRDEAIVLRTHKLGEADRIITLLTAEHGQVRAVAKGVRRTSSKFGARLEPFSVVDVQAHR 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP--CLELYDMLNIFL 118
+ + + A L++ G + R + + + +L
Sbjct: 65 GRSLDTITQVESLALHGDAIAADYDLYVAGTVIVEAAERLTADSDAAGHSQYLLLLGALH 124
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K I L L G+ C G S GGAVC + P
Sbjct: 125 ALAKRRHDPTLIRTSYLLRALALAGWAPSCYDCANCGAAGPHSAFSIAEGGAVCAACRPP 184
Query: 179 YAEKMLVLPSFLWKEEQTIDAD 200
A L + + D
Sbjct: 185 GAASPSPDAMALMGDLLSGDWA 206
>gi|254976027|ref|ZP_05272499.1| DNA repair protein [Clostridium difficile QCD-66c26]
gi|255093415|ref|ZP_05322893.1| DNA repair protein [Clostridium difficile CIP 107932]
gi|255101593|ref|ZP_05330570.1| DNA repair protein [Clostridium difficile QCD-63q42]
gi|255307462|ref|ZP_05351633.1| DNA repair protein [Clostridium difficile ATCC 43255]
gi|255315160|ref|ZP_05356743.1| DNA repair protein [Clostridium difficile QCD-76w55]
gi|255517829|ref|ZP_05385505.1| DNA repair protein [Clostridium difficile QCD-97b34]
gi|255650945|ref|ZP_05397847.1| DNA repair protein [Clostridium difficile QCD-37x79]
gi|260684015|ref|YP_003215300.1| DNA repair protein [Clostridium difficile CD196]
gi|260687675|ref|YP_003218809.1| DNA repair protein [Clostridium difficile R20291]
gi|260210178|emb|CBA64370.1| DNA repair protein [Clostridium difficile CD196]
gi|260213692|emb|CBE05562.1| DNA repair protein [Clostridium difficile R20291]
Length = 257
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 4/188 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M I+L Y E +IIL + TR+ G+ + + ++ + + N+
Sbjct: 1 MIILNTQGIVLKAIRYKESDIILTLFTRKLGKVSAIAKGAKKNKSSLLSSSQLFSYSNFT 60
Query: 60 -SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + E+++S F Y + + E + L+ +L L
Sbjct: 61 LKKQGNMYKVTQSEIIKSFYNISYDIEAFSYATYITKLVENSILENQTNNRLFILLAQTL 120
Query: 119 NCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVG 176
+ + I EL L IGF + KC+ + GG +C
Sbjct: 121 YLYTQDNTDNRFITAAFELKFLDYIGFKPIVNKCINCECKILQNSVFNIYEGGILCSKCS 180
Query: 177 LPYAEKML 184
+ +
Sbjct: 181 KLFDNNIK 188
>gi|270291316|ref|ZP_06197538.1| DNA repair protein RecO [Pediococcus acidilactici 7_4]
gi|304385066|ref|ZP_07367412.1| recombination protein O [Pediococcus acidilactici DSM 20284]
gi|270280162|gb|EFA25998.1| DNA repair protein RecO [Pediococcus acidilactici 7_4]
gi|304329260|gb|EFL96480.1| recombination protein O [Pediococcus acidilactici DSM 20284]
Length = 253
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLA 63
+++ +++ E +++++ +TR+YG+ + F++N + +++ + R + R
Sbjct: 10 TGMVMFAKNHRENDLLVKFLTREYGKRMFFIKNAKKKDFKLRSAILPFTHGRYSGLIRSN 69
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L Y + + + +D L L
Sbjct: 70 GLSYINAALDVKQFENIFQDIELNAYATFLLNLVDAAFDDNFKIEAWFDRLARALTLIDA 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ I I++ LL + G + CVV G L S GG +C++
Sbjct: 130 GNDAEVITDLIQIQLLNSFGIAIVWDHCVVCGRRDLALDYSESRGGMLCQNH 181
>gi|281424994|ref|ZP_06255907.1| DNA repair protein RecO [Prevotella oris F0302]
gi|281400838|gb|EFB31669.1| DNA repair protein RecO [Prevotella oris F0302]
Length = 240
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L +GE ++++++T Q GR R S R + Q ++ V
Sbjct: 1 MVIKTKAIVLHAFKFGENKMMIDLLTEQQGRVTFAARISNSPRAKVKKQYFQPFAVLDVE 60
Query: 58 WRSRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + + S + + L++ +
Sbjct: 61 YDYRQKATIQTFIHVGIAYPLGSIPFDSYKLSISFFLAELTAYATRDEQTNAPLFNYIVS 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + LL+ +GF +L
Sbjct: 121 SIEWLDSCGTTFSNFHLVYIVHLLRFLGFYPNLEAY 156
>gi|121534211|ref|ZP_01666036.1| DNA repair protein RecO [Thermosinus carboxydivorans Nor1]
gi|121307314|gb|EAX48231.1| DNA repair protein RecO [Thermosinus carboxydivorans Nor1]
Length = 248
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 5/194 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ +AI+L VR G + ++ + +RQYG+ + + LQ + V +
Sbjct: 4 EYSVEAILLTVRDCGTADRMVTLFSRQYGKIAAVAFGARRPKSSFAGCLQPFSHVDLLLV 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + E++ H +Y + PE +P E++++L L+
Sbjct: 64 -RNRGGECIRQCEIIRGHRKLREELPRMVYTALVAEIVTELWPEHQPDPEVFELLLDVLS 122
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDL-LWVSPKSGGAVCRSVGLP 178
+ + +L GF + +CV G L + +GG +C + G
Sbjct: 123 ALEERNPRVAAIAAAWQLL-ALAGFAPEYRRCVACGSGVSLPAHFNIGAGGVMCPACGGS 181
Query: 179 YAEKMLVLPSFLWK 192
A L K
Sbjct: 182 QASFTEGQADLLTK 195
>gi|332881941|ref|ZP_08449583.1| DNA repair protein RecO [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680176|gb|EGJ53131.1| DNA repair protein RecO [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 239
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
MY + A++L Y + ++I+ TR+YG ++ + Q + +
Sbjct: 1 MYQKTSALVLSAMKYADNSLIVRCFTREYGGCSYLLKGILKPSKSALKVGLFQPLAQLAL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ +V+ + + + + P + L+D L+
Sbjct: 61 VATYKEGALSYIKEAKVIHPYSTLHTHPYKSVVTIFLSEVCAQICQPDTPDIPLFDFLSE 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
L ++ L L + +GF D T + +
Sbjct: 121 QLYRLDTTDYNPHFHLKFLLSLTRLLGFYPDTTHDHLPYFNIEEGIF 167
>gi|299142180|ref|ZP_07035313.1| DNA repair protein RecO [Prevotella oris C735]
gi|298576269|gb|EFI48142.1| DNA repair protein RecO [Prevotella oris C735]
Length = 240
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L +GE ++++++T Q GR R S R + Q ++ V
Sbjct: 1 MVIKTKAIVLHAFKFGENKMMIDLLTEQQGRVTFAARISNSPRAKVKKQYFQPFAVLDVE 60
Query: 58 WRSRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + + S + + L++ +
Sbjct: 61 YDYRQKATIQTFIHVGIAYPLGSIPFDSYKLSISFFLAELTAYATRDEQTNAPLFNYIVS 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + LL+ +GF +L
Sbjct: 121 SIEWLDSCGTTFSNFHLVYIVHLLRFLGFYPNLEAY 156
>gi|119961429|ref|YP_947965.1| DNA repair protein RecO [Arthrobacter aurescens TC1]
gi|119948288|gb|ABM07199.1| putative DNA repair protein RecO [Arthrobacter aurescens TC1]
Length = 277
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 8/204 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L GE + I+ ++T+ +G+ + + S R L+ + + S
Sbjct: 38 YRDDAVVLRTHKLGEADRIITLLTKHHGQVRAVAKGVRRTSSRFGARLEPFMVADLQLVS 97
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + F + Y++L L
Sbjct: 98 GRTLDIVTQAVAKGAYGSSIAADYGRFTVAAAMTETAEKLTDADTESGTAQYNLLVGALA 157
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ ++ LL+ + G+ T+C G + GG VC
Sbjct: 158 ALSRSDHPPEL--ILDSYLLRALATGGWAPSFTECARCGRPGPHTAFAAPIGGMVCSDCR 215
Query: 177 LPYAEKMLVLPSFLWKEEQTIDAD 200
P + L T +
Sbjct: 216 PPGSPAPAPETVVLLGALLTGNWS 239
>gi|124008226|ref|ZP_01692923.1| DNA repair protein RecO [Microscilla marina ATCC 23134]
gi|123986325|gb|EAY26147.1| DNA repair protein RecO [Microscilla marina ATCC 23134]
Length = 233
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 7/175 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----- 55
M + I++ Y E +II ++ T + G + +S++ + +
Sbjct: 1 MLKKTRGIVIHYTKYSETSIIAKIFTEEMGMKTYIINGVRSNKNGSKIALYQPLTLLDMV 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
V ++ + L L + L E E L+D L
Sbjct: 61 VYYKQNTSNIQRISEARCHVPFHNIPFDFQKSTIALFIAEVLSKALREEEENHLLFDFLL 120
Query: 116 IFLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
L + F + + +GF + V+ + VS S
Sbjct: 121 NALVWFDDTQKDFRAFHLQFLAKMPRFLGFDPQ-SADVMIAEVNNQRPVSFPSTK 174
>gi|320527306|ref|ZP_08028491.1| DNA repair protein RecO [Solobacterium moorei F0204]
gi|320132330|gb|EFW24875.1| DNA repair protein RecO [Solobacterium moorei F0204]
Length = 250
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 7/195 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M + +L Y E ++IL V+T++YG+ + + + + + +
Sbjct: 1 MNDRITGFVLKQSDYREADVILTVLTKEYGKLSFVAQGVRKMTSKNAGSIMPYTKTEILF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP----EREPCLELYDML 114
+ + + + + + L L + Y L
Sbjct: 61 DYNETKTIFRLKNARCKEYYRSMHEDIAASSAAAVAAELINVLTLQASSDMTNSDEYAFL 120
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+I + + + + +L+ G D+ CV G T ++ VSPK GG +C+
Sbjct: 121 DIVFSKLDEGYDPTLVLSLLFVDMLELAGLLPDVDACVTCGNTH-VVTVSPKDGGFLCQE 179
Query: 175 VGLPYAEKMLVLPSF 189
+ +
Sbjct: 180 HAEEHHIPFMKTEDL 194
>gi|161507650|ref|YP_001577604.1| DNA repair protein RecO [Lactobacillus helveticus DPC 4571]
gi|172048291|sp|A8YVM6|RECO_LACH4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|160348639|gb|ABX27313.1| DNA repair protein RecO [Lactobacillus helveticus DPC 4571]
Length = 250
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + Q N + + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIITLIVKGALRPKSQLSAATLNFSMGTYVIYTSGH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + E +P + YD+ L
Sbjct: 69 GLSNLRTYKEVKQFDGLYRDLTKNAYTSFIFDLIDHAFVEYQPLGKYYDLAVFALKKIDA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G +L CV+ G + + S K GG VC ++
Sbjct: 129 GVDNEMITQIVQMKMLSAFGVEPELRHCVICGKERGVFDYSIKLGGIVCSDHFAKVNSRL 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLTPK 193
>gi|331269997|ref|YP_004396489.1| DNA repair protein RecO [Clostridium botulinum BKT015925]
gi|329126547|gb|AEB76492.1| DNA repair protein RecO [Clostridium botulinum BKT015925]
Length = 238
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 2/162 (1%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQNLGE 68
L + Y E + ++ + T + G+ + + ++ + + + R
Sbjct: 2 LKTQDYKENDKLVWLFTEKIGKICAIAKGAKKNKSKFMSSTQAFCFGEYVLFRGKSLYNI 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI- 127
++++S L YG + L + E EL+ K ++
Sbjct: 62 NEIDIIDSFQDLLKDMDTITYGSYFCELILIALEQEESNRELFKDFIKSFYFIKNKAMDL 121
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ EL LL G+G D KC + G +
Sbjct: 122 EILARTFELKLLNATGYGFDFEKCCICGKKINKSNYLSIQYY 163
>gi|299530661|ref|ZP_07044076.1| DNA repair protein RecO [Comamonas testosteroni S44]
gi|298721177|gb|EFI62119.1| DNA repair protein RecO [Comamonas testosteroni S44]
Length = 259
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A IL + E ++ILEV TR GR + + +P+L +++++
Sbjct: 9 DEPAYILHQYDWSESSLILEVFTRHRGRVALAAKGVKRHTSNFRPVLLPLQPLKLSYTLG 68
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
N + + G+ L R L +P L+D+ +
Sbjct: 69 AEGNAEIHSLKGAEWVGGHVMPQGDALWSGMYLNELLLRLLARDDPYTALFDIYAGVVRV 128
Query: 121 HKIPSV-----IGKIFVQIELMLLKNIGFGLDLTK 150
I + EL+LL+ +G DL +
Sbjct: 129 LAGQHGGTTEAIEPVLRAFELVLLRELGHLPDLRQ 163
>gi|81428489|ref|YP_395489.1| DNA repair protein O [Lactobacillus sakei subsp. sakei 23K]
gi|90103522|sp|Q38XA1|RECO_LACSS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78610131|emb|CAI55180.1| DNA repair protein O [Lactobacillus sakei subsp. sakei 23K]
Length = 272
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 2/171 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLAQ 64
+++ ++Y EK+++++++T ++G+ + ++R + + + + R
Sbjct: 11 GLVMYRKNYKEKDMLVKILTDRFGKKMFYLRGANKPKFRLSAAILPFTQAEYGGDIRDDG 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L Y + + P+ EP YD + LN
Sbjct: 71 LSFLNNVKSATQFQTISQDLFLNAYATYILNLIDVGFPDSEPLGIWYDKVEQALNLIDEG 130
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I IE+ LL+ G L C V G T S GG +C+
Sbjct: 131 FDAAMITHIIEIQLLQVFGVQPQLQGCAVCGRTDLAFDYSESYGGLLCQRH 181
>gi|146298469|ref|YP_001193060.1| DNA repair protein RecO [Flavobacterium johnsoniae UW101]
gi|254790554|sp|A5FM31|RECO_FLAJ1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|146152887|gb|ABQ03741.1| DNA repair protein RecO [Flavobacterium johnsoniae UW101]
Length = 237
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M + AI++ + EK++I++ T G FVR+ S R Q +++ +
Sbjct: 1 MQIKTKAIVISSLKFQEKSLIVKCFTLSNGLKSYFVRDAFSSRKASQKIAYFQPLSILEI 60
Query: 57 NWRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L F+ + + L + E E L+ L
Sbjct: 61 EAVHKNKGTLENFKEIKTAVPFQTIHTDIFKSTIVMFLSEMLHYSIQEEEKNEPLFVFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L I + + L + K +GF D+++
Sbjct: 121 TALTWLDHHDDISNFHLILLLEITKYLGFYPDVSE 155
>gi|332529449|ref|ZP_08405408.1| DNA repair protein RecO [Hylemonella gracilis ATCC 19624]
gi|332041095|gb|EGI77462.1| DNA repair protein RecO [Hylemonella gracilis ATCC 19624]
Length = 249
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
++ A +L + E ++ILEV TR +GR + + +P+L +R+ +
Sbjct: 8 EEPAFVLHRYDWSESSLILEVFTRHHGRVALAAKGVKRPTSNFRPVLLPLQPLRLGYAGE 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + L G L R L +P L+D+ +
Sbjct: 68 GEVRT---LKSAEWAGGHVMPTGESLLSGYYLNELLIRLLARDDPHPALFDIYAQVVRLL 124
Query: 122 KIPS 125
Sbjct: 125 ASEH 128
>gi|256832763|ref|YP_003161490.1| DNA repair protein RecO [Jonesia denitrificans DSM 20603]
gi|256686294|gb|ACV09187.1| DNA repair protein RecO [Jonesia denitrificans DSM 20603]
Length = 251
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 22/234 (9%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L + GE + I+ ++TR++G+ + + R L+ + V
Sbjct: 4 YRDDAVVLRAQKLGEADRIITLLTREHGKVRAVGKGVRRTGSRFGARLEPFMHIDVQLNE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + ++ + ++V L E + +
Sbjct: 64 -GRTFDVVTQVDTIGAYARDICIDYGRYTVAGALVETADRLVVAEREPSVQQFWLLAGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC----- 172
+ S + ++ LL+ G+ C G S +GGAVC
Sbjct: 123 RTLASQQVPADLILDSYLLRAFAVAGYAPSFDVCAQCGAPGPHTAFSVAAGGAVCARCRP 182
Query: 173 RSVGLPYAEKMLVLPSFLWKE-EQTIDADS--------LKSAFQLTDYFLNKYA 217
P + + + L E + + L +AF T Y L +
Sbjct: 183 PGSASPASGTFTHMAALLAGEWGVVLSSSDRHVREARGLIAAF--TQYHLERTI 234
>gi|193211824|ref|YP_001997777.1| DNA repair protein RecO [Chlorobaculum parvum NCIB 8327]
gi|238692677|sp|B3QRD3|RECO_CHLP8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|193085301|gb|ACF10577.1| DNA repair protein RecO [Chlorobaculum parvum NCIB 8327]
Length = 260
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L Y +++ I ++TR+YG+ ++ G+S + + + GNL+
Sbjct: 1 MIVKTRAVVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSKTGMLFSPGNLIDAVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP-EREPCLELYDMLNIF 117
+ ++L L L ++ L R+ E + L+ ++
Sbjct: 61 YKKGNRDLQLASDASLVKSPLSETPDLERFSVLYRVLDLVRYASGPEEKNVPLFTLVAAT 120
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I L L+ +GF L +CV +
Sbjct: 121 IERLCDTERDFQPILAGFLLRLVSVLGFTPALKRCVFSN 159
>gi|253681466|ref|ZP_04862263.1| DNA repair protein RecO [Clostridium botulinum D str. 1873]
gi|253561178|gb|EES90630.1| DNA repair protein RecO [Clostridium botulinum D str. 1873]
Length = 238
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQNLGE 68
L + Y E + ++ + T + G+ + + ++ + + + R
Sbjct: 2 LKTQDYKENDKLVWLFTEKIGKVCAIAKGAKKNKSKFMSSTQVFCFGEYVLFRGKSLYNI 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI- 127
++++S L YG + L + E EL+ K ++
Sbjct: 62 NEIDIIDSFQNLLKDMDTITYGSYFCELILIALEQEESNRELFKDFIKSFYFIKNKAMDL 121
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSV 175
+ EL LL G+G D KC + G + S + G VC
Sbjct: 122 EILARTFELKLLNASGYGFDFQKCCICGKKINKSNYLSIQYYGGVCSEC 170
>gi|218777906|ref|YP_002429224.1| DNA repair protein RecO [Desulfatibacillum alkenivorans AK-01]
gi|226737860|sp|B8FKE1|RECO_DESAA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218759290|gb|ACL01756.1| DNA repair protein RecO [Desulfatibacillum alkenivorans AK-01]
Length = 258
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 74/252 (29%), Gaps = 18/252 (7%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS- 60
A+IL YG+ ++I+ T+ G+ +N + R L+ + V + +
Sbjct: 5 TTSAVILRSIEYGDFDLIVTFFTQAQGKRAALAKNARKSFKRFGGALELFSKVSIVYAHG 64
Query: 61 -RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + + ++ + E E++ +L L
Sbjct: 65 KKKGGLPLLSESNLEQHFSNIRMDIHKTALASLWAETIYSWAEEEHAQEEIFQLLIRSLE 124
Query: 120 CHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K+ + L L G L +CV+ + + + P
Sbjct: 125 NLDNEKVDRDKVNILFLLRFLALAGLSPSLDQCVLCCRSLEDWGQGGICFDHARGGIVCP 184
Query: 179 YAEKMLVLPSFLWKEEQT----IDADSLKSA--FQLTDYFLNK------YALQHNIIHCH 226
L L ++ L +A +L+ +++ L +++
Sbjct: 185 KCGVCLAPGPVLSVGAVKQLLWLNKGDLAAAGRMKLSREAMDRGRDLLESFLAYHLGKEP 244
Query: 227 LLRENFLGKLLE 238
FL L
Sbjct: 245 KS-LRFLKDLRR 255
>gi|226323778|ref|ZP_03799296.1| hypothetical protein COPCOM_01553 [Coprococcus comes ATCC 27758]
gi|225207962|gb|EEG90316.1| hypothetical protein COPCOM_01553 [Coprococcus comes ATCC 27758]
Length = 280
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 3/212 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+IL V GE + + ++T++ G+ F + + + +N
Sbjct: 38 TGMILSVAPIGEYDKRVVILTKEKGKISAFAKGARRPNSPLAGACTPCNFGKFMLYEGRN 97
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ +E++ A+L + Y + + E E+ +L + K
Sbjct: 98 SNTLQSAEIENYFAELRTDVEAAYYAFYFLEFADFYTREANDEREMLKLLYQTMRVLTKK 157
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP-YAEK 182
+ EL L G G + +CV G + S K GG VC G Y
Sbjct: 158 IIPFELVRYIFELKALSVSGEGPQVFQCVRCGNRERPCVFSVKEGGLVCSECGQNVYDGM 217
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
L + + F L+D L
Sbjct: 218 RLNTSTLYAMQFIVGTPVEKLYTFTLSDEVLK 249
>gi|223940465|ref|ZP_03632316.1| DNA repair protein RecO [bacterium Ellin514]
gi|223890868|gb|EEF57378.1| DNA repair protein RecO [bacterium Ellin514]
Length = 210
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 3/154 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M IIL R + + I+ +T +GR + + + L L ++
Sbjct: 1 MIENATGIILRTRPLTDTSFIIHWLTPDFGRLATVAKGARRAKSPFAGKLDLFYLADFSF 60
Query: 59 -RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
RSR ++ + ++H L + + P E +++++ F
Sbjct: 61 LRSRRSELHNLREVNLKDTHAGLRRELDYVLQASYCTALVEQTTEMETPLPETFELMSGF 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
L + ++ E+ LL G DL
Sbjct: 121 LKHLPQHPPLPQMLFGFEVKLLSEQGLQPDLEND 154
>gi|284052146|ref|ZP_06382356.1| DNA repair protein RecO [Arthrospira platensis str. Paraca]
Length = 286
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 10/188 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ IIL GE + +L ++T ++G + R + G V W ++
Sbjct: 5 YKATGIILKAIPLGESDRLLTILTPEFGLMRVVAPGARKSRSRLGGTTGLFVVNQWLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E++ SH + G + +P EL+ +L+ L+
Sbjct: 65 GRSLDKITQAEIINSHSGLAKNLGKLAAGQYLAELVLSQALSEQPQPELFLLLSEHLDRL 124
Query: 122 KIPSVIGKIFVQIE---------LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ I+ LL G + C +T + P
Sbjct: 125 EELPNTSTEENAIDIVARLTHGIFHLLAWAGIAPQVQLCCLTQHPLNPNLSDPNWLVGFS 184
Query: 173 RSVGLPYA 180
+ G
Sbjct: 185 LAAGGIIN 192
>gi|308271397|emb|CBX28005.1| DNA repair protein recO [uncultured Desulfobacterium sp.]
Length = 258
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 21/233 (9%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW-RSRL 62
AIIL +G+ ++IL + G+ ++ + R IL+ +++R+ ++
Sbjct: 8 PAIILRRVDFGDYDLILTFFSLNKGKISAIAKSAKKSTKRFGGILELFSVLRLVCSTAKG 67
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ L +++ S Y + + +Y +L L+
Sbjct: 68 RELLVLQEADLINSFSCIRGDLKKTAYASYFAELINEWSETGSEQEGIYRLLYFVLDQLD 127
Query: 123 -IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-----GVTQDLLWVSPKSGGAVCRSVG 176
+ + ++ +G +L+ C + +D + GG +C+
Sbjct: 128 ICRIPEEILSIIFQMRFADIVGVRPNLSVCTDCRIEIDRIKEDRVAFDFSKGGIICQKCA 187
Query: 177 LPYAEKMLVLP------------SFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ + + S+K + F+ +
Sbjct: 188 CISVNRFFLSKGTIKQLLWVESGDLSKAAKIRFTPSSVKEGLGFLESFITYHI 240
>gi|260101320|ref|ZP_05751557.1| DNA repair protein RecO [Lactobacillus helveticus DSM 20075]
gi|260084905|gb|EEW69025.1| DNA repair protein RecO [Lactobacillus helveticus DSM 20075]
gi|328465882|gb|EGF37065.1| DNA repair protein recO [Lactobacillus helveticus MTCC 5463]
Length = 250
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + Q N + + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIITLIVKGALRPKSQLSAATLNFSMGTYVIYTSGH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + Y + E +P + YD+ L
Sbjct: 69 GLSNLRTYKEVKQFDGLYRDLTKNAYTSFIFDLIDHAFVEYQPLGKYYDLAVFALKKIDA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G +L CV+ G + + S K GG VC + ++
Sbjct: 129 GVDNEMITQIVQMKMLSAFGVEPELRHCVICGKERGVFDYSIKLGGIVCSNHFAKINSRL 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLTPK 193
>gi|264677120|ref|YP_003277026.1| pyridoxal phosphate biosynthetic protein PdxJ [Comamonas
testosteroni CNB-2]
gi|262207632|gb|ACY31730.1| Pyridoxal phosphate biosynthetic protein PdxJ [Comamonas
testosteroni CNB-2]
Length = 516
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A IL + E ++ILEV TR GR + + +P+L +++++
Sbjct: 9 DEPAYILHQYDWSESSLILEVFTRHRGRVALAAKGVKRHTSNFRPVLLPLQPLKLSYTLG 68
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
N + + G+ L R L +P L+D+ +
Sbjct: 69 AEGNAEIHSLKGAEWVGGHVMPQGDALWSGMYLNELLLRLLARDDPYTALFDIYAGVVRV 128
Query: 121 HKIPSV-----IGKIFVQIELMLLKNIGFGLDLTK 150
I + EL+LL+ +G DL +
Sbjct: 129 LAGQHGGTTEAIEPVLRAFELVLLRELGHLPDLRQ 163
>gi|312881716|ref|ZP_07741493.1| DNA repair protein RecO [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370606|gb|EFP98081.1| DNA repair protein RecO [Vibrio caribbenthicus ATCC BAA-2122]
Length = 208
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 58/210 (27%), Gaps = 11/210 (5%)
Query: 32 HLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY 89
+ +S R + LQ + + W A LS
Sbjct: 1 MSILSKGARSKRSSLKGALQPFTPLLLKWSGNGALKTLREAEP---ISLGLPLSGINLYS 57
Query: 90 GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLT 149
G + R L + P L+ L + + EL LL +G+G+D
Sbjct: 58 GFYINELIGRVLAQEVPMPGLFHDYLHALTELAQSNNPEPALRRFELSLLAAMGYGVDFL 117
Query: 150 KCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
C +G D + E + D LKSA + T
Sbjct: 118 HCAGSGEMVDPEMTYRYREQKGFIASVRKDHLSFYGSELIAISERRFTTPDQLKSAKRFT 177
Query: 210 DYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
+ AL+ ++ RE F +
Sbjct: 178 -----RVALKPYLLGKPLKSRELFFKMFSK 202
>gi|163787115|ref|ZP_02181562.1| DNA repair protein [Flavobacteriales bacterium ALC-1]
gi|159877003|gb|EDP71060.1| DNA repair protein [Flavobacteriales bacterium ALC-1]
Length = 239
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 8/233 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M +++I+L Y + ++I++ T+Q G +R + QA + +++
Sbjct: 1 MLTTNNSIVLSKLKYRDYDLIVKCYTQQRGVVSYILRGVLKSKKGQTKTVYFQALSQLQI 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ Q+L + L + + + L L L E E +L++ +
Sbjct: 61 EENYKPNQSLHSIKEVKLNYIYKSLHTNIYKSAIVLFLSEILSNVLKEEEKNEDLFNYIK 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + L L + +GF + + + G
Sbjct: 121 TALQYLDSEDNFSNFHLLFLLKLTRYLGFQPENLNDSYPYFNLESGVFEASNQGIHSIFG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
K L+ +F + I+A + Y+ L
Sbjct: 181 ANLTLLKRLLGTNFDALDSIKINAKQRHEFLNMLLYYFE---LHLGNFKKPKS 230
>gi|156741638|ref|YP_001431767.1| DNA repair protein RecO [Roseiflexus castenholzii DSM 13941]
gi|156232966|gb|ABU57749.1| DNA repair protein RecO [Roseiflexus castenholzii DSM 13941]
Length = 266
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 7/212 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++ +AII+ GE + +L ++T G+ + + R+ ++ +
Sbjct: 2 YRCEAIIIRRSDSGEADRVLTILTPS-GKQRVIAKGARKIHSRLAGHIELFTHTTLMLAI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L+ + + R + E +++L L
Sbjct: 61 -GRNLHIVTQSSPLDRFEHLRADLERIGAAYYAAELVDRLIAEESENRRAFELLLGALRA 119
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLP 178
+ I EL LL +G+ L +C GV T+ SP +GGA+C
Sbjct: 120 LNAGAAIDLTLRAYELHLLDAVGYRPQLYECAACGVRLTEATDRFSPAAGGALCPQCAGA 179
Query: 179 YAEKM-LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ + L +F I + +++
Sbjct: 180 DRRALPMRLSTFKLLRYMQIQPPEIAGELRVS 211
>gi|146296962|ref|YP_001180733.1| DNA repair protein RecO [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166221888|sp|A4XKV7|RECO_CALS8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|145410538|gb|ABP67542.1| DNA replication and repair protein RecO [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 244
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 4/184 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL + T + G+ +N + + + Q +
Sbjct: 4 IKAKGIVLKDVNFEESSKILTIFTSELGKIQALSKNCRRTLSPLGAVSQPLIYSEFVFT- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + V+ES + L +Y I + F+ + ++ +L L
Sbjct: 63 KTKEIYSISSASVIESFFDITQNVDLTIYSSYLIELVDSFIQIEQKNEDILRLLLNSLYM 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGLPY 179
K + + E+ +L GF T+CV + ++ S K+ G VC
Sbjct: 123 LKKGADPETVCRIFEIKMLIFTGFFPQFTQCVKCQKSNLSRIFFSFKNAGVVCAECKEEN 182
Query: 180 AEKM 183
++
Sbjct: 183 DMEI 186
>gi|126662644|ref|ZP_01733643.1| DNA repair protein [Flavobacteria bacterium BAL38]
gi|126626023|gb|EAZ96712.1| DNA repair protein [Flavobacteria bacterium BAL38]
Length = 237
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 14/244 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M + AI+L + EK++I++ T G FV++ S++ Q ++ +
Sbjct: 1 MLVKTKAIVLSSLKFQEKSLIVKCFTESDGLKSYFVQSAYSNKKANQKIAYFQPLTIIEI 60
Query: 57 NWRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L F+ L S+ + L + E E L+ L
Sbjct: 61 EANHKNKGTLEHFKEIRLAHSYYTINTDIVKSTIVIFLSEILHHAIKEEEKNQNLFSFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + + + L + K +GF D+++ SP +
Sbjct: 121 TALLWLDTHDEMANFHLILLLEVTKYLGFYPDVSEMDFNFFDTKEASFSPFQSVNTLSAH 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGK 235
++++ L ++ + ++ F Y L L
Sbjct: 181 ETQLFKRLIDLKFDSNQKVFAGIERQIL--LKILLDF---YTLHLEGFKKPKS----LDI 231
Query: 236 LLEL 239
L E+
Sbjct: 232 LKEV 235
>gi|291565919|dbj|BAI88191.1| DNA repair protein RecO [Arthrospira platensis NIES-39]
Length = 298
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 10/188 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ IIL GE + +L ++T ++G + R + G V W ++
Sbjct: 5 YKATGIILKAIPLGESDRLLTILTPEFGLMRVVAPGARKSRSRLGGTTGLFVVNQWLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E++ SH + G + +P EL+ +L+ L+
Sbjct: 65 GRSLDKITQAEIINSHSGLAKNLGKLAAGQYLAELVLSQALSEQPQPELFLLLSEHLDRL 124
Query: 122 KIPSVIGKIFVQIE---------LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ I+ LL G + C +T + P
Sbjct: 125 EELPNTSTEENAIDIVARLTHGIFHLLAWAGIAPQVQLCCLTQHPLNPNLSDPNWLVGFS 184
Query: 173 RSVGLPYA 180
+ G
Sbjct: 185 LAAGGIIN 192
>gi|281421055|ref|ZP_06252054.1| DNA repair protein RecO [Prevotella copri DSM 18205]
gi|281404973|gb|EFB35653.1| DNA repair protein RecO [Prevotella copri DSM 18205]
Length = 241
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L YG+ +I++ T + GR VR +S + + + Q ++ +
Sbjct: 1 MEIKTSAIVLQAIKYGDSQLIVDFFTEKLGRLSFMVRVPKSSKGKMKRQLFQPLMVLNLE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R NL R ++ + + S + L + LY +
Sbjct: 61 FDYRPKSNLQRLRDVSIQIPFSDIPFSPYKLGISMFLAELLSYATRHEQANGALYLFIQD 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTK 150
+ F + L ++GF ++
Sbjct: 121 SIEWLDHAKGAIANFHIVFMIQLSFHLGFMPNIES 155
>gi|293604016|ref|ZP_06686429.1| DNA repair protein RecO [Achromobacter piechaudii ATCC 43553]
gi|292817620|gb|EFF76688.1| DNA repair protein RecO [Achromobacter piechaudii ATCC 43553]
Length = 181
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLG 67
L ++ E ++I++ +R +G + + +P+L A + ++W
Sbjct: 2 LHATAWRETSLIVQTFSRDHGCVAMVAKGAKRPYSVLRPVLSAFQPLLLSWTGNGEVKT- 60
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
E + L+ + + L R LP + L+D ++ L +
Sbjct: 61 ---LTRAEIAGIRPLTGTALMSAWYMNELLLRLLPREDAHPLLFDAYDMALQQLSNGTRA 117
Query: 128 GKIFVQIELMLLKNIGFGLD 147
+ E LL+ G+G+D
Sbjct: 118 AGALRRFEWTLLRETGYGVD 137
>gi|94266117|ref|ZP_01289832.1| Recombination protein O, RecO [delta proteobacterium MLMS-1]
gi|93453314|gb|EAT03754.1| Recombination protein O, RecO [delta proteobacterium MLMS-1]
Length = 255
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW---RS 60
Q A++L V SYGE + I+ R G+ G + R++ + + +
Sbjct: 5 QTSAVVLAVSSYGESDKIVTFYGRDSGKLSGIAKGANRSRIRFVNKLELFSLLELSYEPG 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + E+ + + + RF E +P ++ +L L+
Sbjct: 65 RSSGLVRIDQAELSQPFATIRRDYHRYSAAALAGELAARFSGEGDPDGRIFQLLLWVLHT 124
Query: 121 HKIPSVI----GKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL +G+ DL+ C G
Sbjct: 125 IADCTRPTLELPPCLIFFETKLLALLGYAPDLSGCRRCG 163
>gi|296119857|ref|ZP_06838411.1| DNA repair protein RecO [Corynebacterium ammoniagenes DSM 20306]
gi|295967011|gb|EFG80282.1| DNA repair protein RecO [Corynebacterium ammoniagenes DSM 20306]
Length = 230
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 56/172 (32%), Gaps = 4/172 (2%)
Query: 9 ILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLAQNL 66
++ +GE + ++ ++T+ +G + + + + LQ + V S
Sbjct: 2 VIRSYDFGEADRVIVLLTKNHGLVRAVAKGVRRAKSRFGSRLQLFVNLDVQLYS-GRNLA 60
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + ++ A+++ ++ L LY+++ L+ +
Sbjct: 61 TITQADTVDYFGAQIIDDYDKYTAACVMLEAAERLSLDH-DPFLYELVVATLSTLQGSEQ 119
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
L + + G+ L C G P GGA C P
Sbjct: 120 PMLELDAFLLKAMAHAGWAPSLFNCAQCGAPGPHHAFHPAIGGAACGKCRPP 171
>gi|293189544|ref|ZP_06608264.1| DNA repair protein RecO [Actinomyces odontolyticus F0309]
gi|292821634|gb|EFF80573.1| DNA repair protein RecO [Actinomyces odontolyticus F0309]
Length = 245
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++T ++G+ + + + ++ +++
Sbjct: 4 YRDEAIVLRTHKLGEADRIITLLTAEHGQVRAVAKGVRKTTSKFGARVEPFSVIDAQLH- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP---EREPCLELYDMLNIF 117
R + + + + ++ +V L + +L
Sbjct: 63 RGRTLDTLTQVASIAQYGDAIAANYDLYLAATVVVETAERLTADAHDGTHSQYLLLLGAL 122
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ I L L G+ C V G S GG VC +
Sbjct: 123 NALARGRHDPTLIRTSYTLRALALAGWAPSCFDCAVCGTQGPHTSFSIPDGGTVCDTCRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
P A L + + D +
Sbjct: 183 PGASSPAPDTVALLGQLLSGDWE 205
>gi|154509426|ref|ZP_02045068.1| hypothetical protein ACTODO_01957 [Actinomyces odontolyticus ATCC
17982]
gi|153799060|gb|EDN81480.1| hypothetical protein ACTODO_01957 [Actinomyces odontolyticus ATCC
17982]
Length = 245
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 4/202 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++T ++G+ + + + ++ +++
Sbjct: 4 YRDEAIVLRTHKLGEADRIITLLTAEHGQVRAVAKGVRKTTSKFGARVEPFSVIDAQLHR 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL--PEREPCLELYDMLNIFL 118
+ +++ A + L+L + R + +L
Sbjct: 64 GRTLDTLTQVASIVQYGDAIAANYDLYLAATVVVETAERLTADAHDGTHSQYLLLLGALN 123
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I L L G+ C V G S GG VC + P
Sbjct: 124 ALARGRHDPTLIRTSYTLRALALAGWAPSCFDCAVCGTQGPHTSFSIPDGGTVCDTCRPP 183
Query: 179 YAEKMLVLPSFLWKEEQTIDAD 200
A L + + D +
Sbjct: 184 GASSPAPDTVALLGQLLSGDWE 205
>gi|220912716|ref|YP_002488025.1| DNA repair protein RecO [Arthrobacter chlorophenolicus A6]
gi|219859594|gb|ACL39936.1| DNA repair protein RecO [Arthrobacter chlorophenolicus A6]
Length = 250
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 8/212 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L GE + I+ ++T+++G+ + + S R L+ +V + S
Sbjct: 11 YRDDAVVLRTHKLGEADRIITLLTKRHGQVRAVAKGVRRTSSRFGARLEPFMVVDLQLIS 70
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLN 119
+ ++ + + + E Y++L L
Sbjct: 71 GRSLDIVTQAVAKGAYGGSIAADYGRYTVAAAMTETAEKLTDVDGEAATAQYNLLVGALA 130
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ ++ LL+ + G+ T C G+ + GG VC
Sbjct: 131 ALSRDEHAAGL--ILDSYLLRALATGGWAPSFTDCARCGMPGPHRAFATALGGMVCPDCR 188
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
P + L T D + ++ L
Sbjct: 189 PPGSPAPAAETVILLAALLTGDWPTADASLPL 220
>gi|94264354|ref|ZP_01288146.1| Recombination protein O, RecO [delta proteobacterium MLMS-1]
gi|93455248|gb|EAT05461.1| Recombination protein O, RecO [delta proteobacterium MLMS-1]
Length = 255
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNW-RS 60
+ A++L V SYGE + I+ G+ G + R++ + L+ +L+ + +
Sbjct: 5 RTSAVVLAVSSYGESDKIVTFYGHDTGKLSGIAKGANRSRIRFVNKLELFSLLELYYEPG 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + E+ + + + RF E +P ++ +L L+
Sbjct: 65 RSSGLVRIDQAELSQPFATIRRDYHRYSAAALAGELAARFSGEGDPDGRIFQLLLWVLHT 124
Query: 121 HKIPSVI----GKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + E LL +G+ DL+ C G
Sbjct: 125 IADCTRPTLELPPCLIFFETKLLALLGYAPDLSGCRRCG 163
>gi|317485409|ref|ZP_07944288.1| DNA repair protein RecO [Bilophila wadsworthia 3_1_6]
gi|316923368|gb|EFV44575.1| DNA repair protein RecO [Bilophila wadsworthia 3_1_6]
Length = 256
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 5/180 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M W D A++LGV + E ++ L ++TR++G F G R + L N ++++
Sbjct: 1 MEWSDTALVLGVGRFRESDLWLRMLTRRHGIVSAFAFGGSRSRKRFCGCLDLFNELQIST 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL--PEREPCLELYDMLNI 116
++ + L +L + L + V L P+ + +
Sbjct: 61 KTTRNGMYLSLQEGNLIRGPRRLRTDWNRLGMFMNCVRFVEALGVPQDGAAGVFLLLKDT 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSV 175
+ +V + + L L G+ LT CV G D G VC
Sbjct: 121 LELLEQSETVQDILPILFRLRLASQQGYAPALTACVSCGKKDFDHAGFLVSEGTIVCPDC 180
>gi|209527697|ref|ZP_03276194.1| DNA repair protein RecO [Arthrospira maxima CS-328]
gi|209491869|gb|EDZ92227.1| DNA repair protein RecO [Arthrospira maxima CS-328]
Length = 298
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 10/188 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ IIL GE + +L ++T ++G + R + G V W ++
Sbjct: 5 YKATGIILKAIPLGESDRLLTILTPEFGLMRVVAPGARKSRSRLGGTTGLFVVNQWLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E++ SH + G + +P EL+ +L+ L+
Sbjct: 65 GRSLDKITQAEIINSHSGLAKNLGKLAAGQYLAELVLSQALSEQPQPELFLLLSEHLDRL 124
Query: 122 KIPSVIGKIFV---------QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ LL G + C +T + + P
Sbjct: 125 EGLPNTSTEENAIGIVARLTHGIFHLLAWAGIAPQVQLCCLTQHPLNPNFSDPNWLVGFS 184
Query: 173 RSVGLPYA 180
+ G
Sbjct: 185 LAAGGIIN 192
>gi|77405230|ref|ZP_00782327.1| DNA repair protein RecO [Streptococcus agalactiae H36B]
gi|77176126|gb|EAO78898.1| DNA repair protein RecO [Streptococcus agalactiae H36B]
Length = 243
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 59/190 (31%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFR 70
R+Y E + ++++ T G+ + FV++ + +LQ + +
Sbjct: 2 YNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDD 61
Query: 71 FEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKI 130
++ + + Y + + +L+ L L + +
Sbjct: 62 YKEVLAFQEINSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEIL 121
Query: 131 FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFL 190
E+ LL+ G L+ CV S K G +C + + + P+ L
Sbjct: 122 TNIFEVQLLERFGVALNFHDCVFCHRAGLPFDFSHKYSGLLCPNHYYKDERRNHLDPNML 181
Query: 191 WKEEQTIDAD 200
+
Sbjct: 182 HLINRFQSIQ 191
>gi|239917730|ref|YP_002957288.1| DNA replication and repair protein RecO [Micrococcus luteus NCTC
2665]
gi|281413776|ref|ZP_06245518.1| DNA replication and repair protein RecO [Micrococcus luteus NCTC
2665]
gi|239838937|gb|ACS30734.1| DNA replication and repair protein RecO [Micrococcus luteus NCTC
2665]
Length = 273
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 5/204 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++ +AI+L GE + I+E +T + G + + S R+ +++ +
Sbjct: 21 FRTEAIVLRTHRLGEADRIVEALTPEQGLVRAVAKGVRKTSSRLGSVVEPFMHSTLQLAR 80
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++L + L + ++ +P +
Sbjct: 81 GRGELHTVSQAQLLHPYATMLAADYDAYTVAGALAEAVERVPAVDDGGRRAQYRLFHGAL 140
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + LL+ + G+ +C G + GG VC
Sbjct: 141 AALARGAHDPRLILHSFLLRALAQAGWAPTFDRCARCGAPGPHTALHVGLGGDVCPECRP 200
Query: 178 PYAEKMLVLPSFLWKEEQTIDADS 201
P A L D +
Sbjct: 201 PGAAHPAPETFDLLSALAAGDWAT 224
>gi|77411229|ref|ZP_00787580.1| DNA repair protein RecO [Streptococcus agalactiae CJB111]
gi|77162752|gb|EAO73712.1| DNA repair protein RecO [Streptococcus agalactiae CJB111]
Length = 243
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 60/190 (31%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFR 70
R+Y E + ++++ T G+ + FV++ + +LQ + +
Sbjct: 2 YNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDD 61
Query: 71 FEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKI 130
++ + + Y + + +L+ L L + +
Sbjct: 62 YKEVLAFQEINSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEIL 121
Query: 131 FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFL 190
E+ LL+ G L+ CV S K G +C + + + P+ L
Sbjct: 122 TNIFEVQLLERFGVALNFHDCVFCHRAGLPFDFSHKYSGLLCPNHYYKDERRNHLDPNML 181
Query: 191 WKEEQTIDAD 200
+ +
Sbjct: 182 YLINRFQSIQ 191
>gi|296140451|ref|YP_003647694.1| DNA repair protein RecO [Tsukamurella paurometabola DSM 20162]
gi|296028585|gb|ADG79355.1| DNA repair protein RecO [Tsukamurella paurometabola DSM 20162]
Length = 270
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 5/180 (2%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M ++D A++L GE + IL ++TR+ G + + R + + V+ +
Sbjct: 4 MRSYRDSAVVLRQHKLGEADYILTLLTRENGLVRAVAKGVRRPRSRFGARLELFAHVDLQ 63
Query: 60 SRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE--PCLELYDMLNI 116
+ + ++ L +++ L E P EL+ +
Sbjct: 64 LYPGRNLDTVTQVHSIAAYSGDLAGDYGRYTTACAVIETAERLAGEERAPAPELHRLTVG 123
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L + + L + G+ L C G T +GGAVC
Sbjct: 124 ALRAIAAGLRDRDLILISFLLRAMDAAGWAPALDLCARCGDTGPHRAFHVAAGGAVCVHC 183
>gi|271963862|ref|YP_003338058.1| DNA replication and repair protein RecO [Streptosporangium roseum
DSM 43021]
gi|270507037|gb|ACZ85315.1| DNA replication and repair protein RecO [Streptosporangium roseum
DSM 43021]
Length = 245
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 6/158 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DD I+L GE + I+ V+TR+ G+ G + + R L+ V + +
Sbjct: 4 YRDDGIVLRTHKLGEADRIVTVLTRRTGKIRGVAKGVRRTMSRFGARLEPFTHVDLQLHT 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ + A + + G + R L E L L +
Sbjct: 64 GRTLDVITQAETIRPYGEALVTDYPRYTAGSAMLETADR-LTLGEKEPSLRQFLLLVGGL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
+ S + + ++ L+++ G+ L C
Sbjct: 123 RTLGSGEHEPRLVLDAYFLRSLAVAGYAPALEACARCK 160
>gi|119358324|ref|YP_912968.1| DNA repair protein RecO [Chlorobium phaeobacteroides DSM 266]
gi|229485532|sp|A1BJG7|RECO_CHLPD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119355673|gb|ABL66544.1| DNA replication and repair protein RecO [Chlorobium
phaeobacteroides DSM 266]
Length = 261
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + AI+L Y +++ I + TR++G ++ G++ + + AG ++ +
Sbjct: 1 MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIF 117
+ + + L + I+ L + + +E + L+ ++
Sbjct: 61 YKKTTREIQLVSEGNLLFSPMVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASV 120
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L ++ L L+ +GF + +CV++
Sbjct: 121 LEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSH 159
>gi|291299550|ref|YP_003510828.1| DNA repair protein RecO [Stackebrandtia nassauensis DSM 44728]
gi|290568770|gb|ADD41735.1| DNA repair protein RecO [Stackebrandtia nassauensis DSM 44728]
Length = 251
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 9/183 (4%)
Query: 1 MY---WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVR 55
M ++DDA++L V GE + I+ ++ R GR + + S + L +
Sbjct: 1 MQRKFFRDDAVVLRVHKLGEADHIVSMLGRNSGRMRAVAKGVRRTSSKFGARLAPFGHID 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
V + ++ + ++ +I L E L
Sbjct: 61 VQLIE-GRNLHTVTQVVGIDLYGRNIVRDYQSYTAACAISETAERLTPEEHEPSLRIFQL 119
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + ++ LL+ + G+ LT+C + G + S +GG VC
Sbjct: 120 TLGALRALSDAEHAATLVLDAYLLRTMGVSGWAPALTECALCGAAGEHRAFSVAAGGCVC 179
Query: 173 RSV 175
RS
Sbjct: 180 RSC 182
>gi|227548796|ref|ZP_03978845.1| DNA repair protein RecO [Corynebacterium lipophiloflavum DSM 44291]
gi|227079126|gb|EEI17089.1| DNA repair protein RecO [Corynebacterium lipophiloflavum DSM 44291]
Length = 241
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 4/182 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++D A ++ +GE + ++ ++TR +G + + R + + V ++ +
Sbjct: 7 YRDRAFVVRTYDFGEADRVVVLLTRHHGLVRSVAKGVRKSRSRFGSRIQPFVDIDVQLYP 66
Query: 63 AQNLGEFRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFLN 119
+NL ++ A +++ +I+ L + L+D L
Sbjct: 67 GRNLATITAADTVAYFAGRIIEDFDRYAAGCAILEAAEKLSYSDAERGSSLFDATRDALE 126
Query: 120 CHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ P + L ++ G+G+ L C S +GGAVC + P
Sbjct: 127 QLQSPEQHPTLVLDAFILRATEHAGWGVSLFHCANCQAPGPHKAFSAPTGGAVCNNCRPP 186
Query: 179 YA 180
+
Sbjct: 187 GS 188
>gi|240145040|ref|ZP_04743641.1| DNA repair protein RecO [Roseburia intestinalis L1-82]
gi|257202865|gb|EEV01150.1| DNA repair protein RecO [Roseburia intestinalis L1-82]
Length = 254
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 3/202 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L V G+ + + ++T++ G+ F + + + A + ++
Sbjct: 8 TGMVLKVMPIGDYDRRITLLTKERGKITAFAKGARRPNSALVAAATPFSFGEFEMFEGRS 67
Query: 66 LGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
++++ ++ YG + + E E+ +L L
Sbjct: 68 SYTVVRASIQNYFREVQEELEATYYGCYFLEFADYYCQENNDEREMLKLLYQSLRALTSA 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ EL + G ++ CV G ++L W + GG +C +
Sbjct: 128 AYDKRLVRFIFELKAMAVNGEAPNVFSCVRCGEKENLRWFVTRRGGCICETCKKK-DPSP 186
Query: 184 LVLPSFLWKEEQTIDADSLKSA 205
FL +E + SA
Sbjct: 187 EESGRFLLEESTLYTMQYIISA 208
>gi|256372044|ref|YP_003109868.1| DNA repair protein RecO [Acidimicrobium ferrooxidans DSM 10331]
gi|256008628|gb|ACU54195.1| DNA repair protein RecO [Acidimicrobium ferrooxidans DSM 10331]
Length = 249
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 2/199 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWR 59
++D A++L GE++ + ++TR++G+ VR + R++ I+Q ++ V
Sbjct: 4 RYRDLAVVLRTWPLGERDRLALLLTREHGKVRATVRGARAARSRLRGIVQPSAVLDVECW 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ V + + + ++ L L E + L
Sbjct: 64 RGRELDGVAQAQLVAANLAGRGDLDPDTVGWCYELLDLADGLSEDGHGDDALFALLARGL 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + ++F + L ++ GFG L +C G +L + P S A C + G
Sbjct: 124 GLLVEAPSRELFAALTLRAVQLAGFGPSLDRCGSCGAEGELTRIDPASQQARCDACGGVA 183
Query: 180 AEKMLVLPSFLWKEEQTID 198
+ + L E +T D
Sbjct: 184 IGVPAMRAARLVLEGRTRD 202
>gi|313818468|gb|EFS56182.1| DNA repair protein RecO [Propionibacterium acnes HL046PA2]
Length = 443
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 8/172 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D A++L GE + I+ +++R++G L R + S + L NLV +
Sbjct: 21 YRDQAVVLRTHKLGEADRIVSMLSREHGNILPLARGIRRTSSKFGARLDPFNLVDLQLVQ 80
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + SLF + +P Y +L L
Sbjct: 81 GRNLDVVAQVECLHPYSAPLRQDYSLFTAAEVMVEAADHLVPVDREPAPAQYRLLAGALR 140
Query: 120 CH-----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
P + L L G+ DL CV G SP
Sbjct: 141 VLGQGTTDGPRPPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPS 192
>gi|87200674|ref|YP_497931.1| recombinational DNA repair protein (RecF pathway)-like
[Novosphingobium aromaticivorans DSM 12444]
gi|87136355|gb|ABD27097.1| Recombinational DNA repair protein (RecF pathway)-like protein
[Novosphingobium aromaticivorans DSM 12444]
Length = 202
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + AI+ VR +GE ++ +MT ++G +V + ++P+L GNL+ R
Sbjct: 1 MQIRAPAILCSVRPHGEHGAVVRLMTEEHGLAAAYVAGARGRELRPLLIPGNLLEAEVRG 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R A L R E++ S L + LPE P LYD L L+
Sbjct: 61 RAASQLPSARLELVASRGPWLTEPLPSAGIGWACALTAATLPEGHPYPLLYDSLGALLDA 120
Query: 121 HK---IPSVIGKIFVQIELMLLKNIGFG 145
++ E++LL+ +G+G
Sbjct: 121 ICLAPSARGWARVLAGYEVLLLREVGYG 148
>gi|255327483|ref|ZP_05368550.1| DNA repair protein RecO [Rothia mucilaginosa ATCC 25296]
gi|255295377|gb|EET74727.1| DNA repair protein RecO [Rothia mucilaginosa ATCC 25296]
Length = 283
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 4/158 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
W+D A+IL + GE + I+ ++TR G + + + L+ +++
Sbjct: 7 WRDAALILRTQKLGETDRIIIMLTRDGGITHAVAKAVRKPTSKFGGRLEPFMHTDLSFSR 66
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ L ++ A ++++ +I L L + ++Y + + L
Sbjct: 67 GRTNLHTITQAATLHAYTAPIMANYNAYTCASTIAELAEALTKDTDSTADIYTLTHGALA 126
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ + I + + G+ L C G
Sbjct: 127 ALAHGQHVPQRILTRYLARSMNAAGWPLIGENCTRCGN 164
>gi|291535365|emb|CBL08477.1| DNA replication and repair protein RecO [Roseburia intestinalis
M50/1]
Length = 254
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 3/202 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L V G+ + + ++T++ G+ F + + + A + ++
Sbjct: 8 TGMVLKVMPIGDYDRRITLLTKERGKITAFAKGARRPNSALVAAATPFSFGEFEMFEGRS 67
Query: 66 LGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
++++ ++ YG + + E E+ +L L
Sbjct: 68 SYTVVRASIQNYFREVQEELEATYYGCYFLEFADYYCQENNDEREMLKLLYQSLRALTSA 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ EL + G ++ CV G ++L W + GG +C +
Sbjct: 128 AYDKRLVRFIFELKAMAVNGEAPNVFSCVRCGEKENLRWFMTRRGGCICETCEKK-DPSP 186
Query: 184 LVLPSFLWKEEQTIDADSLKSA 205
FL +E + SA
Sbjct: 187 EESGRFLLEESTLYTMQYIISA 208
>gi|283458099|ref|YP_003362713.1| recombinational DNA repair protein [Rothia mucilaginosa DY-18]
gi|283134128|dbj|BAI64893.1| recombinational DNA repair protein [Rothia mucilaginosa DY-18]
Length = 309
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 4/158 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
W+D A+IL + GE + I+ ++TR G + + + L+ +++
Sbjct: 33 WRDAALILRTQKLGETDRIIIMLTRDGGITHAVAKAVRKPTSKFGGRLEPFMHTDLSFSR 92
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLN 119
+ L ++ A ++++ +I L L + ++Y + + L
Sbjct: 93 GRTNLHTITQAATLHAYTAPIMANYDAYTCASTIAELAEALTKDTDSTADIYTLTHGALA 152
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ + I + + G+ L C G
Sbjct: 153 ALAHGQHVPQRILTRYLARSMNAAGWPLIGENCTRCGN 190
>gi|326803487|ref|YP_004321305.1| DNA repair protein RecO [Aerococcus urinae ACS-120-V-Col10a]
gi|326650240|gb|AEA00423.1| DNA repair protein RecO [Aerococcus urinae ACS-120-V-Col10a]
Length = 255
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L R Y EK++++++ T+ YG+ + FVRN + VR + +
Sbjct: 9 PGIVLYQRPYKEKDLLVKIFTQPYGKRMFFVRNIHKPNNVLKQPSFAFVRAEYIGTINDR 68
Query: 66 LGEFRFEVLESHCA--KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F EV + Y + +P+RE L+ L L+ +
Sbjct: 69 GFSFLKEVKSMTFPKHTMSDLEAMAYASYLCHLVDASMPDREVDQVLFTQLEQALDKIET 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I +E+ LL G L C + Q + S G +C+
Sbjct: 129 GFNPAIISNILEVQLLAKFGVMPQLHACQICQEDQGIFDFSVIFDGLLCQKH 180
>gi|294674977|ref|YP_003575593.1| DNA repair protein RecO [Prevotella ruminicola 23]
gi|294473236|gb|ADE82625.1| putative DNA repair protein RecO [Prevotella ruminicola 23]
Length = 241
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVN 57
M + AI+L YGE +I+++ T+ +GR V + + + Q ++ +
Sbjct: 1 MLTKTQAIVLHAIKYGETRLIVDMFTKVFGRQAFIVSIPKTPRGKVKKQFFQPLTILEIE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R Q L + L + A + L L+ L + LY+ L
Sbjct: 61 TDIRPRQQLQKLHDVRLAAPFASIPFEPDKLAISLFVAEFLYYALRSEQRNELLYEYLEN 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ S + L L + +GF +L
Sbjct: 121 SIVWLDGQQSSFANFHLVFLLRLTRFLGFYPNLDDYKDGDYFD 163
>gi|297172258|gb|ADI23236.1| recombinational DNA repair protein (recF pathway) [uncultured nuHF2
cluster bacterium HF0770_13K08]
Length = 263
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWRS 60
+ D I+L + EK+ IL +T + G+ G + G+S R + L +
Sbjct: 4 IETDGIVLKTMDFKEKDCILTFLTAKVGKKAGILHGGKSLRSGNAAKAELFVLNHFEFSE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +L R L+ + + + L + E +D+L ++
Sbjct: 64 KPNMDLVRIRKCELQESFPLVRKNYSKFLHASYFSELLLQCEIPELDSHEYFDLLKNAMS 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+I + E++LLK +G +L C G
Sbjct: 124 LLSESQTDTEIKLNFEILLLKLLGITPNLEICFQCG 159
>gi|161353755|ref|YP_480379.2| DNA repair protein RecO [Frankia sp. CcI3]
gi|119361459|sp|Q2JDJ2|RECO_FRASC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 243
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L E + I+ V+TR+ GR + + S R L+ G V + S
Sbjct: 4 YRDEGVVLRTAPLAEADRIITVLTRRTGRVRAVAKGVRKTSSRFGSRLEPGTYVDLLLHS 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
A + + +++ + A + ++ L E L L +
Sbjct: 64 GRALDT-VTQADIISPYGATIAVDYPRYTAAAVMLETAERLTSEERQPALRLFLLLVGGL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+ + G+G+ L C G L +S GG VC
Sbjct: 123 RTLAGDERPPALVLDAFLLRALAVSGYGMALDHCARCGGPGLHLSLSVPGGGVVCPQC 180
>gi|86566841|gb|ABD10650.1| DNA replication and repair protein RecO [Frankia sp. CcI3]
Length = 289
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+ ++L E + I+ V+TR+ GR + + S R L+ G V + S
Sbjct: 50 YRDEGVVLRTAPLAEADRIITVLTRRTGRVRAVAKGVRKTSSRFGSRLEPGTYVDLLLHS 109
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
A + + +++ + A + ++ L E L L +
Sbjct: 110 GRALDT-VTQADIISPYGATIAVDYPRYTAAAVMLETAERLTSEERQPALRLFLLLVGGL 168
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ LL+ + G+G+ L C G L +S GG VC
Sbjct: 169 RTLAGDERPPALVLDAFLLRALAVSGYGMALDHCARCGGPGLHLSLSVPGGGVVCPQC 226
>gi|288801614|ref|ZP_06407056.1| DNA repair protein RecO [Prevotella melaninogenica D18]
gi|288335656|gb|EFC74089.1| DNA repair protein RecO [Prevotella melaninogenica D18]
Length = 241
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M + AI+L +G+ ++I+++ T GR R + + Q L+ +
Sbjct: 1 MILKSKAIVLRSLKFGDSSLIIDMFTELEGRISFITRIPKTAKGKIKKQYFQPLTLLDLE 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R +L + + + + L L+ + LY+ +
Sbjct: 61 FDYRPRTSLQRIKEVRILRPYGSIPFDPVKSAILLFLSEFLYYVTRGEQQNAHLYNYVCA 120
Query: 117 FLNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SMEWLDEAERDYANFHLVFMMRLSRFIGFFPNLDAY 156
>gi|258593726|emb|CBE70067.1| putative DNA repair protein recO (Recombination protein O) [NC10
bacterium 'Dutch sediment']
Length = 249
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 4/157 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+AI++G + GE + I+ TR+ G+ R + R + L+ L ++ +
Sbjct: 5 TTEAIVIGGHNLGEADRIIPFFTRKLGKVRAVARGARRVRSRYGGTLELFTLGQLVFFES 64
Query: 62 LAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L + + E G + + + EP E++ +
Sbjct: 65 PNRTLHKINEFSVMEPFAGLKADLGRLGRGAYLVELAGASVEDEEPNEEIFLL-LRDALT 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ ++ E+ LL+ +G+ L+L +C+V
Sbjct: 124 LLVLYDDPRLVRSFEIRLLRIVGYLLELYRCLVCRSV 160
>gi|256419508|ref|YP_003120161.1| DNA repair protein RecO [Chitinophaga pinensis DSM 2588]
gi|256034416|gb|ACU57960.1| DNA repair protein RecO [Chitinophaga pinensis DSM 2588]
Length = 243
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 9/236 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L YG+ + I+ + T +G V +S + + Q GN++ +
Sbjct: 1 MLHKTRGIVLRTVKYGDTSAIVNIFTELFGVQSYMVNGVRSSKPKAKGNLFQPGNILEMV 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + L + + + L I L + L E E ++LY
Sbjct: 61 VYHYEQKTIQRISEFKLGYIYTSLHFNIVKNTVALYMIELLQKSLREPEQQVDLYYFAEQ 120
Query: 117 FLNCHKIPS--VIGKIFVQIELMLLKNIGFGLD--LTKCVVT-GVTQDLLWVSPKSGGAV 171
L + + I + L L +++GF L+ ++ + + P
Sbjct: 121 ALQALDMAPLGIAANIPLYFTLKLAEHLGFRLNGRYSEYAHYLDLQEGSFTDLPPHHSNY 180
Query: 172 CRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL 227
+ +++ S+ +E ++ D + F + ++
Sbjct: 181 LDAANSEITDRLFQCKSWEALDEINMNKDKRRKLLYAYLDFFRLHLPDFQELNSPP 236
>gi|330718561|ref|ZP_08313161.1| DNA repair protein RecO [Leuconostoc fallax KCTC 3537]
Length = 263
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 4/181 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS----R 61
I+L R Y + ++++ V+T G R + + + + +
Sbjct: 5 HGIVLYTRQYKDNDLLVRVLTETEGLRTFLARGAKKQKSKLSAGVQTYTLSLFEGALPKQ 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + + Y L + EP Y I L+
Sbjct: 65 NGSLGYINDVQDTKQYTRLIKDIEANAYVAVIASLLDAAFEDGEPITHWYQQFVIALDKI 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ I E+ LL +G + + G + S K G + +
Sbjct: 125 NNGADPQIITNIFEVQLLVPLGVAPNWRADPIDGNQVGIFDYSEKYNGIISENHFGLDEH 184
Query: 182 K 182
+
Sbjct: 185 R 185
>gi|15827261|ref|NP_301524.1| DNA repair protein RecO [Mycobacterium leprae TN]
gi|221229739|ref|YP_002503155.1| DNA repair protein RecO [Mycobacterium leprae Br4923]
gi|20139698|sp|Q9CCN0|RECO_MYCLE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254764647|sp|B8ZUT3|RECO_MYCLB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|13092810|emb|CAC30141.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932846|emb|CAR70726.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 268
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++TR +G + + + L+ +
Sbjct: 1 MRLYRDWALVLRQHNLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAYIDAQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ ++S +++ L E
Sbjct: 61 LHP-GRNLDIVTQVVSIDAFATDIVSDYGRYTCGCAMLETAERLAGEERAPAPTLHRLTV 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT C +GG+VC
Sbjct: 120 SALRAVADGNRPRDLLLDAYLLRAMGIAGWAPALTACARCATPGPHRAFHIAAGGSVCVH 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|466972|gb|AAA17158.1| B1937_F1_25 [Mycobacterium leprae]
Length = 269
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++TR +G + + + L+ +
Sbjct: 2 MRLYRDWALVLRQHNLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAYIDAQ 61
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ +++ ++S +++ L E
Sbjct: 62 LHP-GRNLDIVTQVVSIDAFATDIVSDYGRYTCGCAMLETAERLAGEERAPAPTLHRLTV 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + ++ LL+ + G+ LT C +GG+VC
Sbjct: 121 SALRAVADGNRPRDLLLDAYLLRAMGIAGWAPALTACARCATPGPHRAFHIAAGGSVCVH 180
Query: 175 V 175
Sbjct: 181 C 181
>gi|595944|gb|AAA56763.1| RecO [Haemophilus influenzae]
Length = 99
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
+L R Y E ++++++ T + GR + ++ R + +LQ + + W +
Sbjct: 7 RGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKS 65
>gi|311104759|ref|YP_003977612.1| DNA repair protein RecO [Achromobacter xylosoxidans A8]
gi|310759448|gb|ADP14897.1| DNA repair protein RecO [Achromobacter xylosoxidans A8]
Length = 195
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 6/144 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
+L ++ E ++I++ +R +G + + +P+L A + ++W
Sbjct: 12 PGYMLHATAWRETSLIVQTFSRDHGCVAMVAKGAKRPYSVLRPVLSAFQPLLLSWTGNGE 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E + L+ + + L R LP + LYD + L
Sbjct: 72 VKT----LTRAEIAGIRPLTGTALMSAWYLNELLLRLLPREDAHPLLYDAYDFALQQLSG 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLD 147
+ + E LL+ G+G+D
Sbjct: 128 GTRAAGALRRFEWTLLRETGYGVD 151
>gi|88802003|ref|ZP_01117531.1| DNA repair protein [Polaribacter irgensii 23-P]
gi|88782661|gb|EAR13838.1| DNA repair protein [Polaribacter irgensii 23-P]
Length = 240
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 5/220 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRVNW 58
AI+L Y + ++I++ T + G ++ + Q + +
Sbjct: 4 ITTKAIVLNSLKYSDTSLIVKCYTAEEGLKAYIIKGVLKAKKGGIKAAYFQPLTQLNLVA 63
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIF 117
+L + + + + + + I + + E E + Y+ L
Sbjct: 64 NHSTKSSLHTLKEVQILNPYKTIFRDIVKQSVVLFISEVLSNSIQEEEKNTDFYNYLEAA 123
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L I + L + +GF D+++ +G S +G S
Sbjct: 124 LIWLDAHDKISNFHLLFLLNASRFLGFYPDISEIERSGFDLLNGSFSEATGNRNIISGNE 183
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ K L+ +F E + + Q+ + +
Sbjct: 184 LFQFKKLLGINFDTIENASFSKKERQLVLQIIIRYFELHL 223
>gi|86131238|ref|ZP_01049837.1| recombination protein O [Dokdonia donghaensis MED134]
gi|85818649|gb|EAQ39809.1| recombination protein O [Dokdonia donghaensis MED134]
Length = 239
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 10/234 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M + +AI+ YGE ++I++ T+ G +RN + + Q + +
Sbjct: 1 MLVKTEAIVFSALKYGEADLIVKAFTKSSGVKSYLLRNILKSKKGKLRVAMFQPLTHLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLN 115
+ L R + +H L + + I + R + E E L++ L
Sbjct: 61 EANHKDKGTLESIREAKVITHYTSLHTQVAKSAIVFFISDMLRSSVQEEEENAPLFEFLV 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ S I + + L +GF D L S +
Sbjct: 121 ASSLWLDLHSDIANFHLLFLVKLSGYLGFYPD-DSEAHHIYFNLLDGYFESSERTLYSRS 179
Query: 176 GLPYA-EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
G K + +F + ++ S + L Y L
Sbjct: 180 GEEIELLKRFLGINFDALTQIKLNQKQRTSFLNI---LLQYYELHLQGFKKPRS 230
>gi|225377162|ref|ZP_03754383.1| hypothetical protein ROSEINA2194_02808 [Roseburia inulinivorans DSM
16841]
gi|225211067|gb|EEG93421.1| hypothetical protein ROSEINA2194_02808 [Roseburia inulinivorans DSM
16841]
Length = 260
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L G+ + + ++TR+ G+ F R + Q + + ++
Sbjct: 8 TGMVLNAMPIGDYDKRITLLTRERGKITAFARGARKPNSQFLAATNPFSFGEFELFEGRS 67
Query: 66 LGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++++ +L + YG + + E E+ +L L + P
Sbjct: 68 TYTVAKVSIQNYFRELAADFNAAYYGFYFLEFADYYCQENNDETEMLKLLYQTLRALESP 127
Query: 125 SVIGKI-FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ ++ EL L G ++ C G + L W S K+ +C K
Sbjct: 128 AFSNRLVRCIYELRTLTINGEAPNVFGCTKCGKKEALHWFSGKTARMLCDHCVNELRRK 186
>gi|297569283|ref|YP_003690627.1| DNA repair protein RecO [Desulfurivibrio alkaliphilus AHT2]
gi|296925198|gb|ADH86008.1| DNA repair protein RecO [Desulfurivibrio alkaliphilus AHT2]
Length = 269
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 15/216 (6%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR---S 60
A+IL VRS+GE + I+ R+ G+ G + Q R++ + + +
Sbjct: 5 HTRAVILAVRSHGEADKIVTFCGRETGKRNGIAKGAQRSRIRFVNKLELFSLLELSYEEG 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + E+LE A + L +L E +P +L+ +L L
Sbjct: 65 RSSGLVRIDQAELLEPFAAIRGDYLKYAAASLVGELLQAWLEEADPDPQLFSLLLWVLQT 124
Query: 121 H--------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT----QDLLWVSPKSG 168
I V EL LL +G+ L C T + S G
Sbjct: 125 IAGDATKDRNPSRNIMAAVVFFELKLLDLLGYRPGLEACRQCHGTALPAGESYHFSLAGG 184
Query: 169 GAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKS 204
G +C + A + +LP L + A L +
Sbjct: 185 GLICPACNRQRASRHNLLPLSLATAKILAKAQELAN 220
>gi|226307200|ref|YP_002767160.1| DNA repair protein RecO [Rhodococcus erythropolis PR4]
gi|259563682|sp|C1A1D6|RECO_RHOE4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|226186317|dbj|BAH34421.1| DNA repair protein RecO [Rhodococcus erythropolis PR4]
Length = 271
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 7/181 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
M ++D A++L + GE + I+ ++TRQ+G + + + L+ + V
Sbjct: 1 MRLYRDTAVVLRLHKLGEADHIVTLLTRQFGLVRAVAKGVRRTTSKFGARLEPFAHIDVQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLE---LYDML 114
+ + +++ ++ +++ L E +
Sbjct: 61 LLP-GKNLDIITQVQTVDAFATDIVDDYSRYTTACAVLETAERLAGEERAPAPQLQRLTV 119
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + + L + G+ L +C +GGAVC
Sbjct: 120 GALRAIAEQARPVEFVLDAFLLRAMGYAGWAPALEECARCSAPGPHRAFHVAAGGAVCTY 179
Query: 175 V 175
Sbjct: 180 C 180
>gi|297559706|ref|YP_003678680.1| DNA repair protein RecO [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844154|gb|ADH66174.1| DNA repair protein RecO [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 243
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 68/203 (33%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D+ ++L + GE + I+ ++TR+ G + + R + L+ V + +
Sbjct: 4 YRDEGVVLRNQKLGEADRIITLLTRRTGLVRAVGKGVRRTRSRFGARLEPCTHVDLQLHA 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ V A + S + + + + + L L +
Sbjct: 64 GRTLDVITQAETVRAYGEAVVSDYSRYTAATAMLETAEKVVSVEK-DPALRQFLLLIGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+++ G+ L +C G + + +GG VC
Sbjct: 123 RTLGEGSHDSRLVLDAYLLRSLAVAGYAPSLAECARCGSRGEHRAFAVHAGGMVCTVCRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
+ L D +
Sbjct: 183 HGSVHPSPDTLRLMSALLGGDWE 205
>gi|255659364|ref|ZP_05404773.1| DNA repair protein RecO [Mitsuokella multacida DSM 20544]
gi|260848448|gb|EEX68455.1| DNA repair protein RecO [Mitsuokella multacida DSM 20544]
Length = 246
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 5/201 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+Q +A++LG +++G+ + ++ T++ G + R +Q + + +
Sbjct: 4 YQTEAVVLGSKNWGDADKMMTFFTKERGLVRAAAFGCRRPRSPLAGGMQMFSYLDLQLSE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + YG L FLPE +P ++ L L+
Sbjct: 64 GRRVDTVRQCLLR-RHYRKLSEDLTAMAYGSFVAEFLREFLPEGQPEPRMFAALLDILDA 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLPY 179
+ + + L++ G L CV G + S GG +CR P
Sbjct: 123 FERRNPRVTAVAAV-YQLMEFTGLQLRYENCVHCGRKIEGDAAFSMHEGGVLCRDCATPD 181
Query: 180 AEKMLVLPSFLWKEEQTIDAD 200
A+ + D
Sbjct: 182 AKAFPEELRHFIVGLRDFDWQ 202
>gi|325662227|ref|ZP_08150842.1| DNA repair protein RecO [Lachnospiraceae bacterium 4_1_37FAA]
gi|331086021|ref|ZP_08335104.1| DNA repair protein RecO [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325471479|gb|EGC74700.1| DNA repair protein RecO [Lachnospiraceae bacterium 4_1_37FAA]
gi|330406944|gb|EGG86449.1| DNA repair protein RecO [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 248
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 2/184 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+IL G+ + + ++T++ G+ F R + + ++
Sbjct: 8 TGMILSAAPVGDYDKRVVILTKERGKISAFARGARRPNSSLVGVTTPFAFGEMTLYEGKS 67
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ ++ ++L + YG + + E E+ +L L +
Sbjct: 68 SYNLVQADISNYFSELRTDMEGAYYGFYFMEFADYYTKENNDEREMLKLLYQSLRALVRK 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I EL + G ++ CV G T++L S G +C +
Sbjct: 128 TIPYELIRYIFELKSISINGEAPEVFACVSCGSTEELEVFSESGQGMLCSECCHEVKDGK 187
Query: 184 LVLP 187
+ P
Sbjct: 188 RLHP 191
>gi|167035365|ref|YP_001670596.1| DNA repair protein RecO [Pseudomonas putida GB-1]
gi|189039661|sp|B0KV25|RECO_PSEPG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166861853|gb|ABZ00261.1| DNA repair protein RecO [Pseudomonas putida GB-1]
Length = 227
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 12/231 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ T GR +R +S + +++ + V R R
Sbjct: 8 PAYVLHSRAYKETSALVDFFTP-QGRVRAVLRRARS-KGGSLVRPFVPLEVELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L GL L R LP P L++ + L
Sbjct: 66 N---VGGMDSAGTAAWLHGDALFSGLYLNELLMRLLPAEAPFPTLFEHYTLTLQALGAGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L + V + A V L
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLQQDVNDQPVAADGLYRLR-VDAGLERVELAQPGLFRG 181
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
E +L +A + L + AL ++ L RE F +
Sbjct: 182 TELLALAEANWEAPGALLAAKR-----LMRQALAVHLGAKPLVSRELFRKR 227
>gi|329946922|ref|ZP_08294334.1| DNA repair protein RecO [Actinomyces sp. oral taxon 170 str. F0386]
gi|328526733|gb|EGF53746.1| DNA repair protein RecO [Actinomyces sp. oral taxon 170 str. F0386]
Length = 249
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 8/205 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++TR +G+ + + S R L+ ++V V +
Sbjct: 6 YRDEAIVLRTYKLGEADRIIVMLTRHHGQVRAVAKGVRRTSSRFGARLEPFSMVDVQLHA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR------FLPEREPCLELYDML 114
++ + A ++F + R L + +
Sbjct: 66 GRNLDVVTQAEIIDPFGRAVCADYAMFTCASTMVETAERLSADNGDLGTEASPQQYLLLA 125
Query: 115 NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
G I L L G+ C + G + GGAVC S
Sbjct: 126 GALAAMAHRRHAPGLILDSYLLRALALGGWAPSCYDCALCGAPGPHRAFHVQVGGAVCES 185
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDA 199
A ++ + L + D
Sbjct: 186 CRSAGAVEVEPVTMVLLGALLSGDW 210
>gi|306818296|ref|ZP_07452025.1| recombination protein O [Mobiluncus mulieris ATCC 35239]
gi|304648941|gb|EFM46237.1| recombination protein O [Mobiluncus mulieris ATCC 35239]
Length = 243
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 4/177 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+D+AI+L + GE + I+ +++ G + R+ L+ +V V R
Sbjct: 5 RDEAIVLRTQDLGEADRIVTLLSANNGLVRAVAHGVRKTTSRIGARLEPFGVVDVLIRPG 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
+ E L + + + +V L E Y + L+
Sbjct: 65 RGGLHNVEQVETLAPYGRSIAADYALFTTANLMVETLERLSEEAWATDRYYRLTLGALHA 124
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + L LL G+ C G + +P +GGAVC
Sbjct: 125 LALSRHEPGLVLDSYLLRLLGLAGWAASCWNCATCGAGGPHRYFNPAAGGAVCGECK 181
>gi|290769993|gb|ADD61760.1| putative protein [uncultured organism]
Length = 247
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 2/178 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+IL GE + L ++T++YG+ F + + I + + + R
Sbjct: 8 TGMILSAMPVGEYDRRLVILTKEYGKITVFAKGARKPNSALIGVTRSFIFGTFEVYRGRD 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI- 123
+ ++ E + + Y + E E+ ++L I L
Sbjct: 68 SYTMYKASAKEYFENVVNDLNAVCYACYFAEIADYYGRENLDASEMINLLYITLKALGRG 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ ++ G D C G +L S G C++ +
Sbjct: 128 AVSHELIRFIYEIRMIAVNGECPDFFTCHECGREDNLYVYSYSRNGLCCKNCATNVYD 185
>gi|269976425|ref|ZP_06183410.1| DNA repair protein RecO [Mobiluncus mulieris 28-1]
gi|307701456|ref|ZP_07638475.1| DNA repair protein RecO [Mobiluncus mulieris FB024-16]
gi|269935226|gb|EEZ91775.1| DNA repair protein RecO [Mobiluncus mulieris 28-1]
gi|307613366|gb|EFN92616.1| DNA repair protein RecO [Mobiluncus mulieris FB024-16]
Length = 259
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 4/177 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+D+AI+L + GE + I+ +++ G + R+ L+ +V V R
Sbjct: 21 RDEAIVLRTQDLGEADRIVTLLSANNGLVRAVAHGVRKTTSRIGARLEPFGVVDVLIRPG 80
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
+ E L + + + +V L E Y + L+
Sbjct: 81 RGGLHNVEQVETLAPYGRSIAADYALFTTANLMVETLERLSEEAWATDRYYRLTLGALHA 140
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + L LL G+ C G + +P +GGAVC
Sbjct: 141 LALSRHEPGLVLDSYLLRLLGLAGWAASCWNCATCGAGGPHRYFNPAAGGAVCGECK 197
>gi|227874977|ref|ZP_03993126.1| DNA repair protein RecO [Mobiluncus mulieris ATCC 35243]
gi|227844426|gb|EEJ54586.1| DNA repair protein RecO [Mobiluncus mulieris ATCC 35243]
Length = 243
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 4/177 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+D+AI+L + GE + I+ +++ G + R+ L+ +V V R
Sbjct: 5 RDEAIVLRTQDLGEADRIVTLLSANNGLVRAVAHGVRKTTSRIGARLEPFGVVDVLIRPG 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLNC 120
+ E L + + + +V L E Y + L+
Sbjct: 65 RGGLHNVEQVETLAPYGRSIAADYALFTTANLMVETLERLSEEAWATDRYYRLTLGALHA 124
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + L LL G+ C G + +P +GGAVC
Sbjct: 125 LALSRHEPGLVLDSYLLRLLGLAGWAASCWNCATCGAGGPHRYFNPAAGGAVCGECK 181
>gi|256851186|ref|ZP_05556575.1| DNA repair protein RecO [Lactobacillus jensenii 27-2-CHN]
gi|260660610|ref|ZP_05861525.1| DNA repair protein RecO [Lactobacillus jensenii 115-3-CHN]
gi|282934652|ref|ZP_06339895.1| DNA repair protein RecO [Lactobacillus jensenii 208-1]
gi|297206051|ref|ZP_06923446.1| recombination protein O [Lactobacillus jensenii JV-V16]
gi|256616248|gb|EEU21436.1| DNA repair protein RecO [Lactobacillus jensenii 27-2-CHN]
gi|260548332|gb|EEX24307.1| DNA repair protein RecO [Lactobacillus jensenii 115-3-CHN]
gi|281301227|gb|EFA93528.1| DNA repair protein RecO [Lactobacillus jensenii 208-1]
gi|297149177|gb|EFH29475.1| recombination protein O [Lactobacillus jensenii JV-V16]
Length = 251
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 2/184 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR--SRLA 63
I+ + Y E +++ +++++ G VR + + N++ +
Sbjct: 9 TGIVFKRQRYKEADVLAKIISKDMGIFTMLVRGALRPKSKLSASVLAFSYGNYQVLTSQK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ +L Y + E + E Y+++ + L
Sbjct: 69 GLSPLKTYKDIKQFSNLYSDLTLNSYACYLCDLVDHAFVEYQSLGEFYNLILVALTKLNA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL +L G +C + G S +GG +C+ A
Sbjct: 129 GQDPEIICQLVELQMLAAYGVRPQFKQCAICGEIHGPFDYSISAGGVICQKHFNEVARMH 188
Query: 184 LVLP 187
L
Sbjct: 189 LDAK 192
>gi|115376813|ref|ZP_01464037.1| DNA repair protein RecO [Stigmatella aurantiaca DW4/3-1]
gi|115366175|gb|EAU65186.1| DNA repair protein RecO [Stigmatella aurantiaca DW4/3-1]
Length = 223
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 3/159 (1%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
++ ++TRQ+G+ F + + + L+ +RV+ + ++L +
Sbjct: 1 MVTLLTRQHGKLTAFAAGARKSKRRFAGALEPFMYLRVHLVETRGSTVRLDSTDILAGYY 60
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELML 138
A L L ++ + EP EL+ +L +L + EL
Sbjct: 61 AARQELPLIARALYAVEMCRELTRDHEPHPELFALLEEYLVRLNAKEAGPTSLLAFELSA 120
Query: 139 LKNIGFGLDLTKCVVTGVTQDLL-WVSPKSGGAVCRSVG 176
L + G C + G GGAVC G
Sbjct: 121 LAHAGLMPRFDACALCGGEPGERPRFDQAHGGAVCEPCG 159
>gi|172039459|ref|YP_001805960.1| DNA repair protein RecO [Cyanothece sp. ATCC 51142]
gi|171700913|gb|ACB53894.1| putative recombination protein O [Cyanothece sp. ATCC 51142]
Length = 282
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 12/217 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+Q I+L + E + ++ +++ +YG V + + + + V ++
Sbjct: 9 YQTTGIVLKGMPFQEADRLVTLLSPEYGLIRAIVPGARKQKSKLRGRCELFVINELLIAK 68
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E LES+ + +P LELY++LN L
Sbjct: 69 GRSLDKITQAETLESYPGLSKDLGKLAAAQYLAELALNLALDDQPQLELYELLNEHLRRL 128
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTG-----VTQDLLWVSPKSGGA--- 170
+ SV ++ + LL G G + C +T D W S A
Sbjct: 129 EKMSVAESLYGYLAQAVFHLLAIAGIGPQVHCCCLTQEELTPNFNDPNWCVGFSFDAGGL 188
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
+ + + + + +L
Sbjct: 189 INLEIKDRGKNNSHSVVLPIINHKLKASELTLLQHLN 225
>gi|148360407|ref|YP_001251614.1| DNA repair protein RecO [Legionella pneumophila str. Corby]
gi|296106526|ref|YP_003618226.1| DNA repair protein RecO (recombination protein O) [Legionella
pneumophila 2300/99 Alcoy]
gi|254764638|sp|A5IFW8|RECO_LEGPC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148282180|gb|ABQ56268.1| DNA repair protein RecO [Legionella pneumophila str. Corby]
gi|295648427|gb|ADG24274.1| DNA repair protein RecO (recombination protein O) [Legionella
pneumophila 2300/99 Alcoy]
Length = 229
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ + G+ + L++ TR+ G + G++ + Q +LQA + W S +
Sbjct: 8 AWVIHKQWSGDTSARLKLFTREMGLINCLCKGGRTPKKQSLLQAFIPL---WVSIEERYD 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + L GL L+ L P +L+D LN +
Sbjct: 65 QYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALARE 124
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I + E LLK G+ TG L V V + +K
Sbjct: 125 REVIEALLRRFEWALLKACGYTFSFLHEARTG----ELIVPDSYYQFVAGEGFILGGDKK 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + +
Sbjct: 181 IPGEHLLAIAADNLSESAYLKSAKFI 206
>gi|94986745|ref|YP_594678.1| hypothetical protein LI0301 [Lawsonia intracellularis PHE/MN1-00]
gi|254764637|sp|Q1MRL9|RECO_LAWIP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|94730994|emb|CAJ54357.1| hypothetical protein LI0301 [Lawsonia intracellularis PHE/MN1-00]
Length = 249
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 4/183 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M W D+AIIL + S+ E ++ ++++T Q+G F G R + G L + R
Sbjct: 1 MEWLDNAIILELGSFRESDVWVKLLTSQHGVISAFAFGGHRSRRRFCGCLGILNEIQVRV 60
Query: 60 --SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
SR + L ++ + + F + I L + +Y ++
Sbjct: 61 QTSRNGRFLNLQEASLINGPIQLRTNKNRFGAFINCIRFLEVVGVSSDAAPPVYTLMKEL 120
Query: 118 LNCH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
K I + L + G+ + C G + S G + S+
Sbjct: 121 FYFFEKNTQPYEIIPILFRLRIASEQGYAPIFSNCAKCGRLINNKGFFGISDGIIVCSIC 180
Query: 177 LPY 179
+ Y
Sbjct: 181 INY 183
>gi|293376341|ref|ZP_06622578.1| DNA repair protein RecO [Turicibacter sanguinis PC909]
gi|325843400|ref|ZP_08167958.1| DNA repair protein RecO [Turicibacter sp. HGF1]
gi|292645030|gb|EFF63103.1| DNA repair protein RecO [Turicibacter sanguinis PC909]
gi|325489322|gb|EGC91696.1| DNA repair protein RecO [Turicibacter sp. HGF1]
Length = 247
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 5/194 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M D IIL +YGE + I++V+TR G FV+N + L +
Sbjct: 1 MALDVDGIILKNFNYGEHHKIIKVLTRNMGVIGVFVQNANKVNTKKSALVQPLTSARFNL 60
Query: 61 R-----LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ ++ + EV + L Y I + + + E +Y +L
Sbjct: 61 KPSTNANSELYYLYSGEVENHYLNIKLDYETVAYFYFMIELILKGVSSDEYSAYIYRLLK 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
FL+ + + + ++ +G L C T+ ++ + + GG VC
Sbjct: 121 NFLDAADAGYNPYLLSLIFQFKMMPVLGIEPVLDCCANCRSTEQIVTIGIRQGGLVCAKC 180
Query: 176 GLPYAEKMLVLPSF 189
++ P
Sbjct: 181 YDNTQPILIDAPLI 194
>gi|297571539|ref|YP_003697313.1| DNA repair protein RecO [Arcanobacterium haemolyticum DSM 20595]
gi|296931886|gb|ADH92694.1| DNA repair protein RecO [Arcanobacterium haemolyticum DSM 20595]
Length = 243
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDAI+L GE + ++ +++R +G+ + + R ++ + V V
Sbjct: 4 YRDDAIVLRTHDIGEADRVITMLSRNHGKIRAVAKGVRKTGSRFGARVEPFSHVDVQIYL 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP--CLELYDMLNIFL 118
+ + L + + + +IV + + + +L+ +L+ L
Sbjct: 64 -GKTLDTISQVDTLSQYGRTIGRNYDAYTAASAIVEFADIINDSDSAADPQLFALLHGAL 122
Query: 119 NCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
++ V L + G+G + +C GV ++ +GGAVC
Sbjct: 123 YAVAQQVHPPELIVYSYILRSMMVAGWGFSIDECASCGVPGPHSALNIAAGGAVCDDC 180
>gi|119485167|ref|ZP_01619552.1| DNA repair protein RecO [Lyngbya sp. PCC 8106]
gi|119457395|gb|EAW38520.1| DNA repair protein RecO [Lyngbya sp. PCC 8106]
Length = 303
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 10/160 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSR 61
+ I L GE + +L ++T ++G + + R + +V +
Sbjct: 5 YTATGINLKAIPLGESDRLLTILTPEHGLIRAVAPSARKPRSKLGGRSELFIVNQLLLYK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++++S+ + + P EL+ +LN L+
Sbjct: 65 GRSLDRITQADLIKSYGGLSQNLGKLSASQYLAEVVLSVALSEHPQEELFLLLNEHLDRL 124
Query: 122 KIPSVIGKIFVQI---------ELMLLKNIGFGLDLTKCV 152
+ +I LL G + C
Sbjct: 125 EHLPNTPQIETITATIAYLTHGMFHLLAWSGISPQVQHCC 164
>gi|332665579|ref|YP_004448367.1| DNA repair protein recO [Haliscomenobacter hydrossis DSM 1100]
gi|332334393|gb|AEE51494.1| DNA repair protein recO [Haliscomenobacter hydrossis DSM 1100]
Length = 241
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 5/151 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR-VNWR 59
M + I+ Y E ++I+++ T G FV +S + + ++ V+
Sbjct: 1 MLIETRGIVFRTVKYSESSLIVDIYTEAKGLQSYFVNGVRSQKSRQNASIFQVMTLVDLV 60
Query: 60 SRLAQNLGEFRFEVLES---HCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + ++ G R + ++S + A G + + E E L+ L
Sbjct: 61 AGVREDRGLNRIKEIKSAFVYRAIPFDVRKSAVGTFITEVARKTIREAEAHPALFAFLYN 120
Query: 117 FLNCHKIPSVI-GKIFVQIELMLLKNIGFGL 146
+ + + +GF
Sbjct: 121 TFLFLDQTQYPVANAHLHFLVEMSGFLGFMP 151
>gi|113460242|ref|YP_718300.1| DNA repair protein RecO [Haemophilus somnus 129PT]
gi|112822285|gb|ABI24374.1| DNA replication and repair protein RecO [Haemophilus somnus 129PT]
Length = 202
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 10/206 (4%)
Query: 35 FVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ 92
+ ++ R + +LQ + +NW R + L ++ G
Sbjct: 1 MAKGARAKRSAWKSLLQPFTPLLLNWSGRGELK---ILIKAEAISLTLPLQTTALYSGFY 57
Query: 93 SIVPLFRFLPEREPCLELYDMLNIFLNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ R L +L+ L P I K E LL+ +G+ +D C
Sbjct: 58 VNELIARLLAPETAYPDLFQYYLQCLTALASSPQEIEKSLRTFEFQLLEVLGYAVDFCHC 117
Query: 152 VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY 211
+G D + + ++ + +D L++A + +
Sbjct: 118 AGSGKPVDEKMTYRYREEKGFIASLIKDNLTFYGRELLAFERREFVDKTVLQAAKRFSRI 177
Query: 212 FLNKYALQHNIIHCHLLRENFLGKLL 237
L Y RE F +L
Sbjct: 178 ALKYYL---GNKPL-KSRELFTQNIL 199
>gi|86143723|ref|ZP_01062099.1| DNA repair protein [Leeuwenhoekiella blandensis MED217]
gi|85829766|gb|EAQ48228.1| DNA repair protein [Leeuwenhoekiella blandensis MED217]
Length = 238
Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 9/233 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M AI++ YGE ++I+ T + G ++ + + Q + + +
Sbjct: 1 MLVTTKAIVISAIKYGEADLIVRCFTEEAGLKSYILQRILKSKKGKLRTAMFQPASQLEL 60
Query: 57 NWRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L R +V++ + + L L + E E LY L
Sbjct: 61 VAVHKDKGTLESIREAKVIQPYVSLHTDVLKSSVVLFLSEMLRNAIQEEEENRALYAFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + L L K +GF D ++ + P
Sbjct: 121 HAFLWFDLHEQTANFHLLFLLELTKYLGFYPDTSELHQPHFNLETGIFEPVEHFYSISEE 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
L K+L+ +F ++ + L Y L +
Sbjct: 181 NLN-TLKLLLGINFDALFTIKLNQKRRADFINM---LLAYYELHLHGFKKPKS 229
>gi|295132042|ref|YP_003582718.1| DNA repair protein RecO [Zunongwangia profunda SM-A87]
gi|294980057|gb|ADF50522.1| DNA repair protein RecO [Zunongwangia profunda SM-A87]
Length = 239
Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 5/222 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M AI++ YGE ++I+ + + + G +R + Q + +
Sbjct: 1 MIVNSKAIVISALKYGEADLIVNLYSLESGLRTYMLRGILKSKKGKFKVSQFQLLTQLEI 60
Query: 57 NWRSRLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L +V+ ++ + + + L + E E LY L
Sbjct: 61 VASHKNKGTLEYLKDAKVINTYTSLHTNMIKTSLVMFIAEVLKSAIREEEANPALYHFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L L +GF D P C
Sbjct: 121 TAFSWLDLHDKTANFHIMFLLKLSGFLGFQPDDLNTEQPFFNLLEGTFEPVKTNDYCVEG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ + +F + + + ++ + +
Sbjct: 181 ENLDILRAFLNVNFNDMQRVKLSGEQRADFLRMLLQYYELHI 222
>gi|325856530|ref|ZP_08172219.1| DNA repair protein RecO [Prevotella denticola CRIS 18C-A]
gi|327313064|ref|YP_004328501.1| DNA repair protein RecO [Prevotella denticola F0289]
gi|325483499|gb|EGC86472.1| DNA repair protein RecO [Prevotella denticola CRIS 18C-A]
gi|326945921|gb|AEA21806.1| DNA repair protein RecO [Prevotella denticola F0289]
Length = 242
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVN 57
M + AI+L +G+ ++I++++T Q GR V + + + Q L+ +
Sbjct: 1 MILKSKAIVLRSLKFGDASLIIDMLTEQEGRVSFIVHIPKTAKGKIKKQYFQPLTLLDLV 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R +L + + + + L L+ + LY+ +
Sbjct: 61 FDYRQRVSLQRIKDVRILHPYGSIPFDPVKSAILLFLSEFLYHVTRGEQRNAGLYNYVKA 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SVEWLDEAEQGYASFHLVFMMRLSRFIGFFPNLEAY 156
>gi|162449950|ref|YP_001612317.1| DNA repair protein RecO (recombination protein O) [Sorangium
cellulosum 'So ce 56']
gi|161160532|emb|CAN91837.1| DNA repair protein RecO (recombination protein O) [Sorangium
cellulosum 'So ce 56']
Length = 239
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 10/225 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH-RMQPILQAGNLVRVNWRS 60
+ A+++ +GE ++++ + T Q G R + + P L+ +L+RV
Sbjct: 11 RLRTGALLVRRVPFGEADLLVGLFTEQGGLISATARGARRSAKRFPALEPMHLLRVTLEI 70
Query: 61 RLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R L + +E +++ + P + LN L+
Sbjct: 71 RPGAELAQLTEAAIERPRLRLAADLGRLEVAGRALRWVREIAPAHTAEQAAWSELNQLLD 130
Query: 120 CHKIPSVIGKIFVQIEL--MLLKNIGFGLDLTKCVVTGVTQDLLWV---SPKSGGAVCRS 174
S + E LL G+GL+LT+CV G D P GG VCR+
Sbjct: 131 RLDEVSTPPPQALLAETGLRLLVAFGWGLELTQCVRCGRACDTTQSACADPARGGLVCRA 190
Query: 175 VGLPYAEKMLVLPSFLW---KEEQTIDADSLKSAFQLTDYFLNKY 216
G L I + + A L + L +
Sbjct: 191 CGGGPVVLRPEPRERLLAAMLGGAPIPEEDVPLALDLVEGALTAH 235
>gi|229493249|ref|ZP_04387041.1| DNA repair protein RecO [Rhodococcus erythropolis SK121]
gi|229319980|gb|EEN85809.1| DNA repair protein RecO [Rhodococcus erythropolis SK121]
Length = 327
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D A++L + GE + I+ ++TRQ+G + + + L+ + V
Sbjct: 60 YRDTAVVLRLHKLGEADHIVTLLTRQFGLVRAVAKGVRRTTSKFGARLEPFAHIDVQLLP 119
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLE---LYDMLNIF 117
+ + +++ ++ +++ L E +
Sbjct: 120 -GKNLDIITQVQTVDAFATDIVDDYSRYTTACAVLETAERLAGEERAPAPQLQRLTVGAL 178
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L + G+ L +C +GGAVC
Sbjct: 179 RAIAEQARPVEFVLDAFLLRAMGYAGWAPALEECARCSAPGPHRAFHVAAGGAVCTYC 236
>gi|52841178|ref|YP_094977.1| DNA repair protein RecO [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|81603441|sp|Q5ZWZ0|RECO_LEGPH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|52628289|gb|AAU27030.1| DNA repair protein RecO [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 229
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ + G+ + L++ TR+ G + G++ + Q +LQA + W S +
Sbjct: 8 AWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPL---WVSIEERYD 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + L GL L+ L P +L+D LN +
Sbjct: 65 QYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALARE 124
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I + E LLK G+ TG L V V + +K
Sbjct: 125 REAIEALLRRFEWALLKACGYTFSFLHEARTG----ELIVPDSYYQFVAGEGFILGGDKE 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + +
Sbjct: 181 IPGEHLLAIAADNLSESAYLKSAKFI 206
>gi|229552354|ref|ZP_04441079.1| recombination protein O [Lactobacillus rhamnosus LMS2-1]
gi|258539725|ref|YP_003174224.1| DNA repair protein recO [Lactobacillus rhamnosus Lc 705]
gi|229314336|gb|EEN80309.1| recombination protein O [Lactobacillus rhamnosus LMS2-1]
gi|257151401|emb|CAR90373.1| DNA repair protein recO [Lactobacillus rhamnosus Lc 705]
Length = 271
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 4/202 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ +++ ++Y E +++++++T Q+G+ + V + ++ R +
Sbjct: 9 EGLVMSRQNYRESDMLVKILTDQFGKKMFLVNRARKPGFTLAAGILPFTHADYIGEVRDS 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + +L Y L P+ P + + L+
Sbjct: 69 GLSYLSAIKSPTQYRQISNDITLNAYAAYIFGLLDLAFPDERPVGFWFKQVKQALHLIDT 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +E+ +LK G + CV+ G T L S GG +C+ ++
Sbjct: 129 GLDPQIIANVVEVQMLKAYGVEPNWRGCVIDGRTDLPLDFSESYGGLLCQQHWDKDPHRL 188
Query: 184 LVLPS--FLWKEEQTIDADSLK 203
P F + T+D +K
Sbjct: 189 HASPRAIFYLRRFSTLDLSQVK 210
>gi|325963337|ref|YP_004241243.1| DNA replication and repair protein RecO [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469424|gb|ADX73109.1| DNA replication and repair protein RecO [Arthrobacter
phenanthrenivorans Sphe3]
Length = 250
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 59/184 (32%), Gaps = 8/184 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++DDA++L GE + I+ ++T+ +G+ + + S R L+ + + S
Sbjct: 11 YRDDAVVLRTHKLGEADRIITLLTKHHGQVRAVAKGVRRTSSRFGARLEPFMVADLQLVS 70
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ + + + Y++L L
Sbjct: 71 GKTLDIVTQAVAKGAYGGSIAADYGRYTVAAAMTETAEKLTDVDGEAGTAQYNLLVGALA 130
Query: 120 CHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ ++ LL+ + G+ T C G+ S GG VC
Sbjct: 131 SLSRDEHAAGL--ILDSYLLRALATGGWAPSFTHCARCGMPGPHTAFSAALGGMVCGGCR 188
Query: 177 LPYA 180
P +
Sbjct: 189 PPGS 192
>gi|54293918|ref|YP_126333.1| DNA repair protein recO [Legionella pneumophila str. Lens]
gi|81601436|sp|Q5WXW5|RECO_LEGPL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|53753750|emb|CAH15208.1| DNA repair protein recO [Legionella pneumophila str. Lens]
Length = 229
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ + G+ + L++ TR+ G + G++ + Q +LQA + W S +
Sbjct: 8 AWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPL---WVSIEERYD 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + L GL L+ L P +L+D LN +
Sbjct: 65 QYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALARE 124
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I + E LLK G+ TG L V V + +K
Sbjct: 125 REAIEALLRRFEWALLKACGYTFSFLHEARTG----ELIVPDSYYQFVAGEGFILGGDKE 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + +
Sbjct: 181 IPGEHLLAIAADNLSEPAYLKSAKFI 206
>gi|332291949|ref|YP_004430558.1| DNA repair protein RecO [Krokinobacter diaphorus 4H-3-7-5]
gi|332170035|gb|AEE19290.1| DNA repair protein RecO [Krokinobacter diaphorus 4H-3-7-5]
Length = 239
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 10/234 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRV 56
M + +AI+ YGE ++I++ T+ G +R + + Q + +
Sbjct: 1 MLVKTEAIVFSALKYGEADLIVKAFTKSSGLKSYLIRGVLKSKKGKLRVAMFQPLTHLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLN 115
+ L R + +H L + + I + R + E L+D +
Sbjct: 61 EANHKDKGTLESIREAKVVTHYTSLHTEVAKSAIVFFIADVLRSSVQEEEENVPLFDFIV 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + I + L L +GF D V + + + ++
Sbjct: 121 NASLWLDLNNTIANFHLLFLLKLSSYLGFYPD-DSEVQHEYFNLMDGMFENAETSIYCRS 179
Query: 176 GLPYA-EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
G K+ + +F ++ S + L Y L +
Sbjct: 180 GQDIELLKLFLGTNFDALVSIKLNQKQRTSFLNM---LLQYYELHLHGFKKPRS 230
>gi|270340241|ref|ZP_06007550.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332128|gb|EFA42914.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 240
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVN 57
M + A++L +G+ +I++++TR+ GR + G+ + Q L+ +
Sbjct: 1 MEVKTRALVLHALKFGDSQMIVDLLTREQGRVSFICYIPKTGRGKVKKQFFQPLTLLNLV 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + +L F + + + + + L L + LYD +
Sbjct: 61 YTYKPNHSLQRFSEISISQPYGSLPFDAYKLSITLFISEFLTYATRGEQENTHLYDYIES 120
Query: 117 FLNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVV 153
+ + + L + IGF +L+ V
Sbjct: 121 SMMWLDNVSRSFANFHLVFMMHLSRFIGFFPNLSDNVR 158
>gi|218248277|ref|YP_002373648.1| DNA repair protein RecO [Cyanothece sp. PCC 8801]
gi|226737859|sp|B7K1F0|RECO_CYAP8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218168755|gb|ACK67492.1| DNA repair protein RecO [Cyanothece sp. PCC 8801]
Length = 273
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 4/159 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ IIL GE + ++ +++ ++G V + + + ++ V + ++
Sbjct: 5 YKATGIILKGMPIGEADRLVTILSPEWGLIRAVVPGARKSKSRLRGRSELFVINDLLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + LES+ G + +P ELY++L L
Sbjct: 65 GRSLDKITQADTLESYPKLSQELGKLASGQYLAELVLCLAVSEQPQGELYELLKEHLRRL 124
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTGVT 157
+ S + + LL G G + +C +T T
Sbjct: 125 EDISSGQSLHSHLAQAVFHLLAIAGIGPQVHRCCLTQET 163
>gi|119713401|gb|ABL97463.1| DNA repair protein RecO [uncultured marine bacterium HF130_81H07]
Length = 238
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 9/226 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
+ AI+L ++ E ++I T +YG R +S + + I G + + +
Sbjct: 5 RFSSKAILLHSANFRESSLIGTFFTDEYGLIKLVARGARSKKNKLSNIKVPGAIFEIEFG 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN---I 116
+ + + ++ S L + R + P ++ L
Sbjct: 65 GKGDLKNLYTCEIID----SIIIKESNLKIYLYLNEIIIRTIEPEAPVKSIFKSLISLYK 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + P+ + EL L+ +G+ LT ++ L
Sbjct: 121 DIQLSESPTERELKLRKFELDLISELGYEFSLTLDSKGKKIKEDLIYEFIPSKGFQEVNK 180
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ +L + E ++ S K + L+ + +
Sbjct: 181 ESLKDVILGSSILKFNEGVFLNDQSKKFIKNIMKSSLDTISSKPLN 226
>gi|282859417|ref|ZP_06268523.1| DNA repair protein RecO [Prevotella bivia JCVIHMP010]
gi|282587815|gb|EFB93014.1| DNA repair protein RecO [Prevotella bivia JCVIHMP010]
Length = 241
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L YG+ ++I++++T + GR VR ++ + + Q L+ +
Sbjct: 1 MLQKTKAIVLHSLKYGDSSLIIDLLTEEEGRLTFIVRLPKTPKGKIKKQYFQPMTLLDIA 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNI 116
+ R ++ + ++ + + L I L + LY +
Sbjct: 61 FDFRPHASMQRIKDIRIDIPFTTIPFDPIKSSILLFISEFLLYITRSEQYNKALYQFVAK 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTK 150
+ + F L L K IGF +L++
Sbjct: 121 SVEWLDTATDHLANFHLTFMLHLSKFIGFHPNLSE 155
>gi|225548174|ref|ZP_03769459.1| hypothetical protein RUMHYD_00153 [Blautia hydrogenotrophica DSM
10507]
gi|225040613|gb|EEG50859.1| hypothetical protein RUMHYD_00153 [Blautia hydrogenotrophica DSM
10507]
Length = 250
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 2/184 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ GE + L ++TR+ G+ F + + + A V ++ ++
Sbjct: 8 QGMVISAIPVGEYDKRLVLLTRERGKISAFAKGARRPNSPLLAAANPFVLGSFTLYEGRS 67
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN-CHKI 123
+ +L +G + + E E ++L + L
Sbjct: 68 SYTVNQAAPSHYFTELAQEQPGIYFGFYFLELADYYGREGVDAHETVNLLYVSLKALLNP 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ E LL G + +CV ++L + S G VC + ++
Sbjct: 128 KIPDELVRSIYEFRLLVIQGEYPQIFQCVSCSREEELTYFSQSLHGMVCHNCRQTASDLS 187
Query: 184 LVLP 187
V
Sbjct: 188 YVDE 191
>gi|262375523|ref|ZP_06068756.1| DNA repair protein RecO [Acinetobacter lwoffii SH145]
gi|262309777|gb|EEY90907.1| DNA repair protein RecO [Acinetobacter lwoffii SH145]
Length = 236
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 17/202 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y E++ I+ + T++YGR G +R + ++
Sbjct: 7 HGYLIHHRKYRERSHIVHLFTQEYGRVDGILRQ----------MPPPQYQPIRLQASGKS 56
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH---- 121
+ ++ + F G L R P + + L
Sbjct: 57 ELKNFTKLEIVNQPIFFFGDAFFSGFYLNEILLRLCPLEVEMPQTFAKYAETLTALQQLS 116
Query: 122 ---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ +I Q E +LL+ +G+GLD + + S
Sbjct: 117 AQSNPNLYLKQILRQFEHVLLEELGYGLDFSVDANQVQINPEQHYYFQLNAGFMPSAKTL 176
Query: 179 YAEKMLVLPSFLWKEEQTIDAD 200
+ + E D +
Sbjct: 177 RSTMSGQQILSMLTHENGGDFN 198
>gi|58337482|ref|YP_194067.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227904118|ref|ZP_04021923.1| recombination protein O [Lactobacillus acidophilus ATCC 4796]
gi|67460737|sp|Q5FJT8|RECO_LACAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|58254799|gb|AAV43036.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227868137|gb|EEJ75558.1| recombination protein O [Lactobacillus acidophilus ATCC 4796]
Length = 250
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ +++T+Q G V+ + + N + + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIITKQSGIITLIVKGAMRPKSKLSAATLNFSAGTYVIYTSGH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ A + Y + E +P + Y++ L
Sbjct: 69 GLSNLRTYKKVQQFDALYRDLTKNAYVSFIFDLIDHAFVEYQPLGQYYNLAVFALEKISA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G +L+ CV+ G + + S K GG +C ++
Sbjct: 129 GVDSEMITQIVQMKMLSAYGVKPELSHCVICGKEKGIFDYSIKLGGVICSDHFNVVESRL 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLKPK 193
>gi|257060399|ref|YP_003138287.1| DNA repair protein RecO [Cyanothece sp. PCC 8802]
gi|256590565|gb|ACV01452.1| DNA repair protein RecO [Cyanothece sp. PCC 8802]
Length = 273
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 4/159 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ IIL GE + ++ +++ ++G V + + + ++ V + ++
Sbjct: 5 YKATGIILKGMPIGEADRLVTILSPEWGLIRAVVPGARKSKSRLRGRSELFVINDLLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + LES+ G + +P ELY++L L
Sbjct: 65 GRSLDKITQADTLESYPKLSQELGKLAAGQYLAELVLCLAVSEQPQGELYELLKEHLRRL 124
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTGVT 157
+ S + + LL G G + +C +T T
Sbjct: 125 EDISSGQSLHSHLAQAVFHLLAIAGIGPQVHRCCLTQET 163
>gi|229828495|ref|ZP_04454564.1| hypothetical protein GCWU000342_00557 [Shuttleworthia satelles DSM
14600]
gi|229793089|gb|EEP29203.1| hypothetical protein GCWU000342_00557 [Shuttleworthia satelles DSM
14600]
Length = 248
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + + ++TR+ G F R + R Q + G + + N
Sbjct: 8 TGMVLSTMPIGEFDKRVVLLTRELGEISAFARGARRPRSQLLAATGPMAFGTFELYEGLN 67
Query: 66 LGEFRFEVLESHCAKLLSSSLF-LYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+E++ ++ + + E + +L L
Sbjct: 68 SYTLARASIEAYFLEIAEDYDKVCLAAYFLEMAEYYGIENSDESQRLLLLYQTLRALASD 127
Query: 125 SVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + E+ + G D+ C G + L + +C
Sbjct: 128 KFSPRLLRIIYEIRTMGINGEYPDVFSCAACGRKEGLAYFHMGRRAVICSDC 179
>gi|258647684|ref|ZP_05735153.1| DNA repair protein RecO [Prevotella tannerae ATCC 51259]
gi|260852513|gb|EEX72382.1| DNA repair protein RecO [Prevotella tannerae ATCC 51259]
Length = 240
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 6/189 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + I++V+TR+ G FVR + R Q V +
Sbjct: 1 MLIKSRGIVLHTLKYNDAGCIVDVLTREEGFQSFFVRISRGKRGGLKSAFFQPLTAVDIE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
W + NL R L L L L+D
Sbjct: 61 WNHKPTSNLQTLRSVSPHPMLGL-ERPEKITLALFLAEFLRTALRSEPIAAPLFDYTWDS 119
Query: 118 LNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + F L + +GF +L G+ DL S + +
Sbjct: 120 IEWLNLSEQHFSNFHLVFLLRMTHFLGFYPNLANYAD-GMYFDLENSSFVAHQPLHSHYL 178
Query: 177 LPYAEKMLV 185
P L
Sbjct: 179 DPTDAAFLP 187
>gi|307152071|ref|YP_003887455.1| DNA repair protein RecO [Cyanothece sp. PCC 7822]
gi|306982299|gb|ADN14180.1| DNA repair protein RecO [Cyanothece sp. PCC 7822]
Length = 283
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 4/182 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQA-GNLVRVNWRSR 61
+Q IIL GE + ++ ++T +YG + H+ + +A +V +
Sbjct: 5 YQATGIILKGMPLGESDRLVTILTSEYGLIRAVAPGARKHKSRLRGRAELFVVNQLLIVK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E LES+ + +P +ELY++LN L
Sbjct: 65 GRSLEKIIQAETLESYPGLSRDLGKLTVSQYIAELVLSLALSEQPQIELYELLNEHLRRI 124
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ S ++ + LL G C +T ++ G
Sbjct: 125 EQLSTPQSLYAHLAQAVYHLLAIAGVAPVFHSCCLTHQPIQTNFIDAHWRVGFSFDSGGT 184
Query: 179 YA 180
Sbjct: 185 IN 186
>gi|251772616|gb|EES53181.1| Recombination protein O (RecO) [Leptospirillum ferrodiazotrophum]
Length = 289
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 68/238 (28%), Gaps = 10/238 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ +IL Y + I+ +R+ G GF R S + L R R
Sbjct: 5 EVLILRSGRYLDSAKIVTFFSREGGLGTGFARGATSRDNRFGASLEPLTRSRLSLRRGTL 64
Query: 66 LG---EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
G +V+ S+ ++ + L FLPE P L+ + L+
Sbjct: 65 AGLARILHADVIASYPRIRTDYDRLVWAGLIVRFLLGFLPESHPEPSLFALACGALDRLD 124
Query: 123 IPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ L +G+G+ C G T +
Sbjct: 125 GRVGPPAAVWEGFARQALALLGWGIPAAVCRRCGRTGG----EKEEREEAESHYFRASDG 180
Query: 182 KMLVLPSFLWKEEQTID--ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ L + + + +A +++ L R FL +++
Sbjct: 181 AVFCRSCRLAEGGGELWGVEAEVLNALSRNGGSVDEDVLSPGPGPLLRERLAFLDRVI 238
>gi|220934268|ref|YP_002513167.1| DNA repair protein RecO [Thioalkalivibrio sp. HL-EbGR7]
gi|219995578|gb|ACL72180.1| DNA repair protein RecO [Thioalkalivibrio sp. HL-EbGR7]
Length = 233
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 16/234 (6%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M IL VR Y + + IL+++T GR R +S + + + W+
Sbjct: 1 MNRVHTTGFILHVRPYRDNSHILDLLTEAEGRTACLFRG-RSQKARS----FARYELAWQ 55
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R +LE A +L++ G + LP + P ++ +
Sbjct: 56 GRGELKT----LSLLEEQSAVVLAAQRLACGFYVNELALKLLPRQIPLEGFFEDYAHTVA 111
Query: 120 CHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
P + E LL +G GL+ +D + G +
Sbjct: 112 ALARPDEDLEPLLRGYERSLLHYLGEGLESIDLAALEP-EDCYVYEAQRGLRLAGPGERS 170
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+ + A +L L+ + LQ I R F
Sbjct: 171 RGPCVHGETLRELLGGGVQTPRGRQEAKRLLRGLLD-HHLQGRRIM---SRALF 220
>gi|134300314|ref|YP_001113810.1| DNA repair protein RecO [Desulfotomaculum reducens MI-1]
gi|172044328|sp|A4J7D2|RECO_DESRM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|134053014|gb|ABO50985.1| DNA replication and repair protein RecO [Desulfotomaculum reducens
MI-1]
Length = 256
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 2/177 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++ DAI+L R E + IL V + Q G+ + +
Sbjct: 3 IYKLDAIVLKSRDMREADKILTVYSIQRGKQRIVAHGAAKPNSRKRGAVQPFCFSEFMLH 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L+ A++ L I L + L
Sbjct: 63 RGREIDAISQAELKEGFAEIRYDLDRLTAAAYITELLDGFVAEGEPNQNLFSLLYSALHL 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT--GVTQDLLWVSPKSGGAVCRSVG 176
I E LL G DLT C V + + + + + GG +C+
Sbjct: 123 IAVGNSEMILRGFEAKLLGFSGLQPDLTNCSVCGAEIRETKVSFAVQQGGILCKDCA 179
>gi|91202469|emb|CAJ72108.1| hypothetical protein kustd1363 [Candidatus Kuenenia
stuttgartiensis]
Length = 257
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP---ILQAGNLVRVNW 58
+ DAI LG Y + + I+ TR YG+ + + + + R+ +
Sbjct: 3 ILKTDAITLGRTDYSDSSQIIIFYTRDYGKINTIAKGFKRSSGKYNSKAIDLLTHYRILF 62
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ L VL+++ + + F + +P L+D+
Sbjct: 63 IKKEHSTLHTLTDAVLQNNYPAFRHDLDKYFRASCMAELVNEFTEKNDPNEPLFDLFLNT 122
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
LN + + EL +L +G+ + C+
Sbjct: 123 LNHIATDTNTTIWLLAFELKMLNILGYLPEWEHCIHCKKK 162
>gi|323464339|gb|ADX76492.1| DNA repair protein RecO [Staphylococcus pseudintermedius ED99]
Length = 256
Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 17/252 (6%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + VR + + V+ +
Sbjct: 1 MLVKQKGIIIKAVDYGESDKIITILNEHGAKVPLMVRRAKKIKSGLQATTQIFVQGLFIY 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+VL + Y + + R + E +Y +L+ +
Sbjct: 61 NQWKGMGTLTSVDVLNLNYELRQDIYAHSYASLCLETIDRAMETDEINPTMYRLLDFTFD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCRS--- 174
+ I + L + GF +DL+KCV+TG T L S K G +
Sbjct: 121 RFQQGVSPQLIANIVMLKCMPRFGFDVDLSKCVMTGETNPAKLTHFSFKFDGIIATEVTH 180
Query: 175 ---VGLPYAEKMLVLPSFLWK-EEQTIDADSLKSAFQLTDYFLNKYAL---QHNIIHCHL 227
LP + K + L L I+A ++ A + + ++K+ L +
Sbjct: 181 RDPHALPLSNKTIYLTYVLKDLPLDKINALRIQDA--IVEE-MSKFILLLYKEYAGMYFK 237
Query: 228 LRENFLGKLLEL 239
+ + +L L
Sbjct: 238 S-QRLINQLNRL 248
>gi|218439778|ref|YP_002378107.1| DNA repair protein RecO [Cyanothece sp. PCC 7424]
gi|226737858|sp|B7K8P1|RECO_CYAP7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|218172506|gb|ACK71239.1| DNA repair protein RecO [Cyanothece sp. PCC 7424]
Length = 283
Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 11/237 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+Q IIL GE + ++ ++T +YG V + H+ + ++ V +
Sbjct: 5 YQATGIILKGMPLGEADRLVTILTSEYGLIQAVVPGARKHKSRLRGRSELFVVNQLLIVK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E LES+ + +P +ELY++LN L
Sbjct: 65 GRSLDKLIQAETLESYPGLSRDLGKLTASQYLAELVLSLALCEQPQIELYELLNEHLRRI 124
Query: 122 KIPSVIGKIFVQIE---LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + ++ + LL G + +C ++ + ++ G
Sbjct: 125 EQKATPQTLYPHLAQAVFHLLAIAGVAPQVYQCCLSREPIETNFIDSLWRVGFSFESGGA 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAF--QLTDYFLNKYALQHNIIHC-HLLRENF 232
F + + + + +LT + LQ + F
Sbjct: 185 INLSSDRRQPF--QPSDDLKKEIFLNKLNWKLTA--VELTLLQQLGQKFLPQAYDIF 237
>gi|224024597|ref|ZP_03642963.1| hypothetical protein BACCOPRO_01324 [Bacteroides coprophilus DSM
18228]
gi|224017819|gb|EEF75831.1| hypothetical protein BACCOPRO_01324 [Bacteroides coprophilus DSM
18228]
Length = 252
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 5/169 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L Y +K+ I+ + T Q GR + +S + + Q +LV
Sbjct: 12 MLRKSKGIVLHTVKYSDKSNIVHIYTEQGGRMSFLIPASRSRKSAVNGLLFQPLSLVEFE 71
Query: 58 WRSRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L L+R L E L+ L
Sbjct: 72 ADIRPRSGLHPIREAKSWQPFQSLPYDPYKSAIALFLAEFLYRALKEEAENAPLFAYLVH 131
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVS 164
+ + + + L + +G ++ L
Sbjct: 132 SVLWLDACDTNFANFHLVFLMRLSRFLGLYPNVEGYAEGDCFDLLNACF 180
>gi|307609737|emb|CBW99248.1| DNA repair protein recO [Legionella pneumophila 130b]
Length = 229
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ + G+ + L++ T++ G + G++ + Q +LQA + W S +
Sbjct: 8 AWVIHKQWSGDTSARLKLFTKELGLINCLCKGGRTPKKQSLLQAFIPL---WVSIEERYD 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + L GL L+ L P +L+D LN +
Sbjct: 65 QYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALARE 124
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I + E LLK G+ TG L V V + +K
Sbjct: 125 REAIEALLRRFEWALLKACGYTFSFLHEARTG----ELIVPDSHYQFVAGEGFILGGDKK 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + +
Sbjct: 181 IPGEHLLAIAADNLSESAYLKSAKFI 206
>gi|319892623|ref|YP_004149498.1| DNA recombination and repair protein RecO [Staphylococcus
pseudintermedius HKU10-03]
gi|317162319|gb|ADV05862.1| DNA recombination and repair protein RecO [Staphylococcus
pseudintermedius HKU10-03]
Length = 256
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 17/252 (6%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + VR + + V+ +
Sbjct: 1 MLVKQKGIIIKAVDYGESDKIITILNEHGAKVPLMVRRAKKIKSGLQATTQIFVQGLFIY 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+VL + Y + + R + E +Y +L+ +
Sbjct: 61 NQWKGMGTLTSVDVLNLNYELRQDIYAHSYASLCLETIDRAMETDEINPTMYRLLDFAFD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCRS--- 174
+ I + L + GF +DL+KCV+TG T L S K G +
Sbjct: 121 RFQQGVSPQLIANIVMLKCMPRFGFDVDLSKCVMTGETNPAKLTHFSFKFDGIIATEVTH 180
Query: 175 ---VGLPYAEKMLVLPSFLWK-EEQTIDADSLKSAFQLTDYFLNKYAL---QHNIIHCHL 227
LP + K + L L I+A ++ A + + ++K+ L +
Sbjct: 181 RDPHALPLSNKTIYLTYVLKDLPLDKINALRIQDA--IVEE-MSKFILLLYKEYAGMYFK 237
Query: 228 LRENFLGKLLEL 239
+ + +L L
Sbjct: 238 S-QRLINQLNRL 248
>gi|326203515|ref|ZP_08193379.1| DNA repair protein RecO [Clostridium papyrosolvens DSM 2782]
gi|325986335|gb|EGD47167.1| DNA repair protein RecO [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 2/168 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+++ + GE + I+ V+T + G+ +N + + + + + +
Sbjct: 11 KGLVIREVNTGEADKIITVLTAEEGKISIAAKNARRAKSSLSAGSQLFAYSEYMLFKGKE 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V+E + Y + + + E EP E+ +L L
Sbjct: 71 LYNMSSCQVIEPNYEIRNDIEKLTYCSHILELISDNVQEGEPSEEVLRLLLNTLYVISKT 130
Query: 125 SVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
+ K I V EL L+ +G+ + CV G QD +
Sbjct: 131 NRPLKLITVVFELRLMSLLGYEPHVISCVNCGKAQDESMYFDFDSSGL 178
>gi|220928033|ref|YP_002504942.1| DNA repair protein RecO [Clostridium cellulolyticum H10]
gi|219998361|gb|ACL74962.1| DNA repair protein RecO [Clostridium cellulolyticum H10]
Length = 250
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 3/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+++ + GE + I+ V+T + G+ +N + + + ++ + +
Sbjct: 7 KGLVIKEINTGEADKIITVLTAEEGKISIAAKNARRAKSSLGAGSQLFAYSDYMLFKGKE 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V+E + +Y + + + E EP E+ +L L
Sbjct: 67 LYNMSSCQVIEPNYEIRNDIEKLIYCSHILELILDNVQEGEPSEEILQLLLNTLYVISKT 126
Query: 125 SVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK-SGGAVCRSVGLPYAEK 182
+ + + EL L+ +G+ + CV G QD S G +C+ P +
Sbjct: 127 NRPLNLVTRVFELRLMSLLGYEPHVISCVNCGKAQDENMYFDFDSSGLICKKCLNPRSRS 186
Query: 183 MLVLP 187
L+LP
Sbjct: 187 FLLLP 191
>gi|167767682|ref|ZP_02439735.1| hypothetical protein CLOSS21_02217 [Clostridium sp. SS2/1]
gi|317499139|ref|ZP_07957416.1| DNA repair protein RecO [Lachnospiraceae bacterium 5_1_63FAA]
gi|167710699|gb|EDS21278.1| hypothetical protein CLOSS21_02217 [Clostridium sp. SS2/1]
gi|291560816|emb|CBL39616.1| DNA replication and repair protein RecO [butyrate-producing
bacterium SSC/2]
gi|316893552|gb|EFV15757.1| DNA repair protein RecO [Lachnospiraceae bacterium 5_1_63FAA]
Length = 240
Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 2/176 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ ++L + GE + + ++T++ GR F R + Q +
Sbjct: 4 EIKVTGMVLQAGNIGEYDKRIVLLTKERGRISAFARGAKKATSQYAAACQPFTFGEFSLY 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN-- 119
+N + +E++ L +Y L +L L
Sbjct: 64 EGKNSFNLMWAGVENYFDTLKKDLDLIYYASYFCELASYLTRENNDELEILKLLYQTLRA 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
K I + E+ +L G G++ ++CV G +DL+W + G VC
Sbjct: 124 LEKKTIDIELVRCIYEIKILALYGIGIEASRCVKCGSREDLIWFDARESGVVCNKC 179
>gi|295424886|ref|ZP_06817601.1| recombination protein O [Lactobacillus amylolyticus DSM 11664]
gi|295065452|gb|EFG56345.1| recombination protein O [Lactobacillus amylolyticus DSM 11664]
Length = 255
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW--RSRLA 63
II + Y E +++ +++T++ G VR + Q N + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIITKEDGIITLVVRGALRPKSQLNAATLNFSYGRYVIYTNGR 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ + + Y + + E +P + Y++ L
Sbjct: 69 GLSNLRTYKEVKQYDGLYNDLTKNAYASFILDLIDHAFVEYQPLGKYYELAKFALERINE 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I +++ +LK G +L C++ G + S K GG +C ++
Sbjct: 129 NTDPEMITQIVQMQMLKAYGVEPELRHCLICGKETGIFDYSIKLGGVICSDHFATENSRL 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLKPK 193
>gi|315604782|ref|ZP_07879842.1| DNA repair protein RecO [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313511|gb|EFU61568.1| DNA repair protein RecO [Actinomyces sp. oral taxon 180 str. F0310]
Length = 245
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 6/203 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++T ++G+ + + + ++ +++
Sbjct: 4 YRDEAIVLRTHKLGEADRIITLLTAEHGQVRSVAKGVRRTTSKFGARVEPFSVIDAQLH- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE---PCLELYDMLNIF 117
R + + + + ++ IV L + +L
Sbjct: 63 RGRTLDTLTQVASIAQYGDAIAANYDLYLAATVIVETAERLTTDATDGTHSQYLLLLGAL 122
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ I L L G+ C + G S GG VC +
Sbjct: 123 NALARSRHDPTLIRTSYTLRALALAGWAPSCFDCAICGSKGPHGSFSIPDGGTVCDTCRP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDAD 200
P A L + + D
Sbjct: 183 PGASSPAPDTVALLGQLLSGDWA 205
>gi|270159973|ref|ZP_06188629.1| DNA repair protein RecO [Legionella longbeachae D-4968]
gi|289165283|ref|YP_003455421.1| DNA repair protein recO [Legionella longbeachae NSW150]
gi|269988312|gb|EEZ94567.1| DNA repair protein RecO [Legionella longbeachae D-4968]
gi|288858456|emb|CBJ12334.1| DNA repair protein recO [Legionella longbeachae NSW150]
Length = 229
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 11/212 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +A +L + G+ + + +TR++G + G++ + Q +LQA + V+
Sbjct: 1 MTRTVEAWVLHKQWSGDTSARVSFLTREFGIVQCLYKGGRTPKKQALLQAFTPLWVSIAE 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + + L + GL L+ L L++ LN
Sbjct: 61 RYDR---YYIQSIESISSTLPLIGNALFAGLYINEILYYALAPNSSDSMLFEAYLFTLNK 117
Query: 121 H---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
K V+ + + E LL+ G+ LT+ T + + G
Sbjct: 118 LVSTKDRLVLEALLRRFEWTLLRTCGYSFSLTQEARTEN-----LILAELHYQFIAGEGF 172
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + + ++
Sbjct: 173 VSDSGGIPGEHILALAQDNLSDTAYLKSAKII 204
>gi|237785900|ref|YP_002906605.1| DNA repair protein RecO [Corynebacterium kroppenstedtii DSM 44385]
gi|237758812|gb|ACR18062.1| DNA repair protein RecO [Corynebacterium kroppenstedtii DSM 44385]
Length = 266
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 20/196 (10%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWR 59
++D A+++ + E + I+ ++TR++G + + ++ + L +V V
Sbjct: 4 NYRDRALVVRHYDFSEADRIVVLLTREHGVVRAVAKGVRKNKSRFGGRLAPFVVVDVQLY 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
E + S+ ++ S +++ + L E L D +
Sbjct: 64 VGRGSLATLTSAETVRSYNQLIVDSYAKYTAACAVLDVAEKLTVGE-EATLCDDAAAAIR 122
Query: 120 CHKIPSVIGKIFV--------------QIELMLLKNI---GFGLDLTKCVVTGVTQDLLW 162
+ +++ +L+ + G+ L C G
Sbjct: 123 DIAHSWPVDSAAQGEQSSVRGEGLPTLRVDKFVLRALAAEGWEPQLFSCAGCGQPGPHHA 182
Query: 163 VSPKSGGAVCRSVGLP 178
S GGAVC + P
Sbjct: 183 FSASIGGAVCGACRPP 198
>gi|149371051|ref|ZP_01890646.1| DNA repair protein [unidentified eubacterium SCB49]
gi|149355837|gb|EDM44395.1| DNA repair protein [unidentified eubacterium SCB49]
Length = 239
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM----QPILQAGNLVRV 56
M +AI+L + YGE ++I T G +R + Q + +
Sbjct: 1 MVTTTNAIVLSTKKYGEADLIATCYTASDGVKTYMLRGILKSKKGKIRASHFQLLTQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ L + + + + L + E E LY+ ++
Sbjct: 61 EANHKNKGTLEYLKDAKIAVPYQTLHTDIVKSCLVMFLSEILTSTIREEESNNSLYNFIS 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L + L L +GF D
Sbjct: 121 KSLETLDHAEEFANFHIYFLLQLSTYLGFYPDDNN 155
>gi|303235629|ref|ZP_07322236.1| DNA repair protein RecO [Prevotella disiens FB035-09AN]
gi|302484076|gb|EFL47064.1| DNA repair protein RecO [Prevotella disiens FB035-09AN]
Length = 241
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 10/231 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M + I+L YG+ +I++V+T GR VR + + Q L+ +
Sbjct: 1 MNTKTRGIVLRSVRYGDAKLIIDVLTELSGRISFAVRVPKTAKGKLKRQYFQPMTLLDME 60
Query: 58 WRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L + + + + L L+ + + L++ +
Sbjct: 61 YEWRERNTLQNMKDVRIALPYTSIPFEPVKSTMLLFLAEFLYYVTRDEQQNATLFNYIYN 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLL-KNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCR 173
L F + ++ L K +GF L + + + S A
Sbjct: 121 SLEWLDNSEKDYANFHLVFMIRLGKFLGFQPYLEEYTQGAYFDLRNGCFTSSLPFHADYL 180
Query: 174 SVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIH 224
L+ +F + + + ++TDY L+ Y L +
Sbjct: 181 PQKESEQMYTLMRMTFDTMKVFKLSHNERN---RITDYILHYYRLHVPNMP 228
>gi|238917281|ref|YP_002930798.1| DNA repair protein RecO (recombination protein O) [Eubacterium
eligens ATCC 27750]
gi|238872641|gb|ACR72351.1| DNA repair protein RecO (recombination protein O) [Eubacterium
eligens ATCC 27750]
Length = 247
Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 2/178 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+IL GE + L ++T++YG+ F + + I + + + R +
Sbjct: 8 TGMILSAMPVGEYDRRLVILTKEYGKITVFAKGARKPNSTLIGVTRSFIFGTFEVYRGRE 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI- 123
+ ++ E + + Y + E E+ ++L I L
Sbjct: 68 SYTMYKASAKEYFENVVNDLNAVCYACYFAEIADYYGRENLDASEMINLLYITLKALGRG 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ ++ G D C G +L S G C++ +
Sbjct: 128 AVSHELIRFIYEIRMVAVNGECPDFFTCHECGREDNLYVYSYSRNGLCCKNCATNVYD 185
>gi|255282514|ref|ZP_05347069.1| DNA repair protein RecO [Bryantella formatexigens DSM 14469]
gi|255266807|gb|EET60012.1| DNA repair protein RecO [Bryantella formatexigens DSM 14469]
Length = 247
Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 2/213 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + + ++T++ G+ GF + + + A + +
Sbjct: 8 TGMVLSAVPVGEYDKRIVLLTKERGKISGFAKGARRQNSPLMAAAKPFSFGTFECYEGRT 67
Query: 66 LGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ L YG+ + + E EL +L + L +
Sbjct: 68 SYNIYQAQISNYFEGLSLDFEGAYYGMYFLEFADYYARENSDEKELLKLLYVSLRALENQ 127
Query: 125 SVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ K+ EL + G ++ C V G T+ L S G VC +
Sbjct: 128 HLPKKLVRYVFELRAMVINGEYPEVFCCTVCGSTEHLTGYSHAGNGVVCADCLRAAHAET 187
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
L+ + + F +++ L ++
Sbjct: 188 LLESTIFTMQYVVATPLEKLYTFTVSEEVLEEF 220
>gi|304383675|ref|ZP_07366134.1| recombination protein O [Prevotella marshii DSM 16973]
gi|304335199|gb|EFM01470.1| recombination protein O [Prevotella marshii DSM 16973]
Length = 241
Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M + AI+L YG+ +++E++T ++GR R + + Q L+ +
Sbjct: 1 MLIKTRAIVLHTFKYGDAKLVIELLTEKFGRLSFMSRIPKTAKGKLKKQFFQPLTLLEIE 60
Query: 58 WRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L R + + L L+ + L++ L
Sbjct: 61 FDMRQRGGLQTMRDARIALPFVSIPFEPVKLSLSLFVAEFLYYATRSEQENTPLFNYLIN 120
Query: 117 FLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + L L + +GF +L T
Sbjct: 121 CIEWLDNSCGAFANFHLVFTLRLSRFLGFYPNLEASAATAYFD 163
>gi|295693062|ref|YP_003601672.1| DNA repair protein reco [Lactobacillus crispatus ST1]
gi|295031168|emb|CBL50647.1| DNA repair protein recO [Lactobacillus crispatus ST1]
Length = 251
Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + + N + +
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIMTLIVKGALKPKSRLSAATLNFSIGTYVIYTSGK 68
Query: 66 LGEFRFEVLESHC--AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E+ + Y + E +P + YD+ L
Sbjct: 69 GLSNLRTYKEARQFDGLYNDLTKNAYISFIFDLIDHAFVEYQPIGKYYDLALFALKKIDS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G L CV+ G + + S K GG +C +M
Sbjct: 129 GVDAEMITQIVQMKILAAYGVEPQLKHCVICGKEKGVFDYSIKMGGVICSDHFSTVTSRM 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLKPK 193
>gi|258511946|ref|YP_003185380.1| DNA repair protein RecO [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478672|gb|ACV58991.1| DNA repair protein RecO [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 271
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 4/157 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W +A+++ V YGE++ IL ++T G R G + A + +
Sbjct: 4 IWTTEAVVVRVVRYGERDAILTLLTET-GLVTAMARGGARPVGRLSAAARLCAQGTYVLY 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFLN 119
+ +G+ R + L + + L P Y L+
Sbjct: 63 QGRGMGDVRQAEIARQRRALHEDVVKAAYAAYLCDLASRAIPERPDAPPAAYRQFVAVLD 122
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTG 155
+ V + + EL + +G G D C+ G
Sbjct: 123 GLEADRVPADVLARAFELKVCAWLGVGPDWRVCIRCG 159
>gi|218288618|ref|ZP_03492895.1| DNA repair protein RecO [Alicyclobacillus acidocaldarius LAA1]
gi|218241275|gb|EED08450.1| DNA repair protein RecO [Alicyclobacillus acidocaldarius LAA1]
Length = 271
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 4/157 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W +A+++ V YGE++ IL ++T G R G + A + +
Sbjct: 4 IWTTEAVVVRVVRYGERDAILTLLTET-GLVTAMARGGARPVGRLSAAARLCAQGTYVLY 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFLN 119
+ +G+ R + L + + L P Y L+
Sbjct: 63 QGRGMGDVRQAEIARQRRALHEDVVKAAYAAYLCDLASRAIPERPDAPPAAYRQFVAVLD 122
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTG 155
+ V + + EL + +G G D C+ G
Sbjct: 123 GLEADRVPADVLARAFELKVCAWLGVGPDWRVCIRCG 159
>gi|255037791|ref|YP_003088412.1| DNA repair protein RecO [Dyadobacter fermentans DSM 18053]
gi|254950547|gb|ACT95247.1| DNA repair protein RecO [Dyadobacter fermentans DSM 18053]
Length = 231
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 7/168 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
M I L Y E +II + T +G V +S + + Q L+ +
Sbjct: 1 MLHTTRGIALSYIRYKESSIIARIYTETFGIQTYIVNGVRSSKSKSNRIAFFQPLTLLDL 60
Query: 57 NWRSRLAQNLGEFRF--EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
+ ++ + + GL L + L E E L+ +
Sbjct: 61 VVYHKNKEDSIHRISELKCYAPFASIPYDVIKSGLGLFVTEMLGKTLREEENNEPLFHFI 120
Query: 115 NIFLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL 161
+ +Q + L +GFG++ + + + +
Sbjct: 121 EQSVLYLDGAEGGYENFHIQFLMQLAHYLGFGVETVDDLESELKDNHF 168
>gi|199599318|ref|ZP_03212716.1| Recombinational DNA repair protein (RecF pathway) [Lactobacillus
rhamnosus HN001]
gi|199589757|gb|EDY97865.1| Recombinational DNA repair protein (RecF pathway) [Lactobacillus
rhamnosus HN001]
gi|259649851|dbj|BAI42013.1| DNA repair protein RecO [Lactobacillus rhamnosus GG]
Length = 271
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 4/202 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ +++ ++Y E +++++++T Q+G+ + V + ++ R +
Sbjct: 9 EGLVMSRQNYRESDMLVKILTDQFGKKMFLVNRARKPGFTLAAGILPFTHADYIGEVRDS 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + +L Y L P+ P + + L+
Sbjct: 69 GLSYLSAIKNPTQYRQISNDITLNAYAAYIFGLLDLAFPDGRPVGFWFKQVKQALHLIDT 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +E+ +LK G + CV+ G T L S GG +C+ ++
Sbjct: 129 GLDPQIIANVVEVQMLKAYGVEPNWRGCVIDGRTDLPLDFSESYGGLLCQQHWDKDPHRL 188
Query: 184 LVLPS--FLWKEEQTIDADSLK 203
P F + T+D +K
Sbjct: 189 HASPRAIFYLRRFSTLDLSQVK 210
>gi|153853790|ref|ZP_01995146.1| hypothetical protein DORLON_01137 [Dorea longicatena DSM 13814]
gi|149753540|gb|EDM63471.1| hypothetical protein DORLON_01137 [Dorea longicatena DSM 13814]
Length = 239
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 2/184 (1%)
Query: 9 ILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGE 68
IL GE + + ++TR+ G+ F R + + + +
Sbjct: 2 ILTAAPIGEYDRRVVILTRERGKISAFARGARRPNSALMGVTSPFSFGEFTVYEGRTSYT 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLNCH-KIPSV 126
+ ++ +L + Y + L + E+ +L L I
Sbjct: 62 LVSASVSNYFQELRTDVEGAYYGFYFMDLAGYYAREANDETEMLKLLYQTLRALTNIHIP 121
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
I EL + G G + +C++ G + S + GG +C ++ + +L
Sbjct: 122 NELIRCIYELKTITVNGEGPQVMECIMCGDKEREKVFSIRRGGVICTQCAGHISDGIRLL 181
Query: 187 PSFL 190
PS L
Sbjct: 182 PSTL 185
>gi|238927456|ref|ZP_04659216.1| DNA repair protein RecO [Selenomonas flueggei ATCC 43531]
gi|238884738|gb|EEQ48376.1| DNA repair protein RecO [Selenomonas flueggei ATCC 43531]
Length = 243
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 1/197 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I+LG RS+GE + I+ + T++ G + R V + + +
Sbjct: 7 EGIVLGTRSWGEADKIVTIYTKERGLVRAAAFGCRRPRSPLAGAMQMFVHADLQFAEGRR 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
L + + + ++ + L + E + +
Sbjct: 67 LETVKTASVRASHHRIADDLMALAYATFTAEVVCAFMPEGVADEHFFDTLALIVTAFETR 126
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ L L G C+ G + + GGA+C + A
Sbjct: 127 HPRVAALAAVLRTLDAAGLQQTYDHCIHCGAAIEGDAFFHAGEGGALCGTCAAAGARPFA 186
Query: 185 VLPSFLWKEEQTIDADS 201
L + Q +D
Sbjct: 187 AALRALLTDLQHLDWTD 203
>gi|319440589|ref|ZP_07989745.1| DNA repair protein RecO [Corynebacterium variabile DSM 44702]
Length = 257
Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 69/191 (36%), Gaps = 14/191 (7%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRV-NW 58
++D+A ++ GE + I+ ++TR +G G + + + + L V V +
Sbjct: 5 NYRDEAFVVRTHDLGEADQIIVLLTRHHGIVRGVAKGVRRTKSRFGARLDRFCRVDVLIY 64
Query: 59 RSRL-----AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL----- 108
R + ++ +++ Y +++ + +
Sbjct: 65 PGRNRAKIDGGLATLSDTAAVRTYAPPIVADVDRYYAAVAMLEIAELTVRGDYGEGEDAT 124
Query: 109 ELYDMLNIFLNCHKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS 167
++D+L+ L + + + ++ L +L+ G+ L C G P +
Sbjct: 125 RIFDLLDAALGDLGVSPLPPRTQADRLVLQVLEVAGWAPSLVDCAQCGARGPHRAFHPHA 184
Query: 168 GGAVCRSVGLP 178
GGAVC P
Sbjct: 185 GGAVCVRCRPP 195
>gi|170077380|ref|YP_001734018.1| DNA repair protein RecO [Synechococcus sp. PCC 7002]
gi|169885049|gb|ACA98762.1| DNA repair protein RecO [Synechococcus sp. PCC 7002]
Length = 270
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 9/160 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++ IIL GE + ++ +++ + G + HR + LV +
Sbjct: 1 MSFKVTGIILKGSPLGEADRLVTILSPEQGLVKAVAPGARQHRSALRGRTELLVVNEFVL 60
Query: 61 -RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R + ++L S+ + G + P ELY++L L
Sbjct: 61 TRGRSLDRIQQADMLTSYSGLRHDFAKLAVGQYLAEVTHYLAVSQTPQPELYELLREHLR 120
Query: 120 CHKIPSVIGK--------IFVQIELMLLKNIGFGLDLTKC 151
+ Q LL GF + C
Sbjct: 121 RIEALEFQPSARVTQIIAHLTQALFHLLAIAGFAPQVQHC 160
>gi|161344755|ref|NP_442000.2| DNA repair protein RecO [Synechocystis sp. PCC 6803]
gi|119370514|sp|Q55569|RECO_SYNY3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 271
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/186 (10%), Positives = 56/186 (30%), Gaps = 6/186 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+Q I++ ++GE + ++ + + +YG + + + + + + +
Sbjct: 5 YQTLGIVVKGMAFGESDRLVTIFSPEYGLIRAIAPGARKPKSSLRGRTELFVVNQFLLFA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + S+ + G I + E LY++ L
Sbjct: 65 GKSLDRINQAETQ-YSYPGLGQNVCNLAAGQYLIELILALGTEASAQTSLYELFTEHLRR 123
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + I+ + L + G C +T T + + +G
Sbjct: 124 LETEATVENIYGHLAQALFHCLGAEGIAPQFHHCAITAQTISPNFYDRQWRVGFSPELGG 183
Query: 178 PYAEKM 183
+
Sbjct: 184 IVDLRS 189
>gi|104783261|ref|YP_609759.1| DNA repair protein RecO [Pseudomonas entomophila L48]
gi|122402120|sp|Q1I5W0|RECO_PSEE4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|95112248|emb|CAK16975.1| Recombination protein RecO [Pseudomonas entomophila L48]
Length = 227
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 14/232 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A +L R+Y E + +++ +T GR +R + + +++ + V R R
Sbjct: 8 PAYVLHSRAYKETSALVDFLTP-QGRVRAVLRRARG-KGGSLVRPFVPLEVELRGRGELK 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + A L GL L R LP P L++ + L
Sbjct: 66 N---VGRLDSTGIAAWLHGDALFSGLYLNELLMRLLPAEAPYPALFEHYTLTLQALAAGR 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + E LL +G+ L++ V + + R + +
Sbjct: 123 PLEPLLRSFEWRLLDELGYAFSLSQDVNDAAVVADGLYRLRVDAGLERV--ELFQPGLFK 180
Query: 186 LPSFLWKEEQTID-ADSLKSAFQLTDYFLNKYALQHNIIHCHL-LRENFLGK 235
L E D +L +A + L + AL ++ L RE F +
Sbjct: 181 GSELLALAEADWDAPGALLAAKR-----LMRQALAVHLGTKPLVSRELFRKR 227
>gi|325261979|ref|ZP_08128717.1| DNA repair protein RecO [Clostridium sp. D5]
gi|324033433|gb|EGB94710.1| DNA repair protein RecO [Clostridium sp. D5]
Length = 246
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 3/212 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + + ++T++ G+ F + + + + ++
Sbjct: 7 TGMVLSTAPIGEYDRRVVILTKEQGKLAAFAKGSRRPNSPLVGAVNPFTFGEFTMYEGRS 66
Query: 66 LGEFRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ + ++ A YG + + E E+ +L +
Sbjct: 67 SHTIQSVNVLNYFAELREDIVGAYYGFYFLEFANYYTKESNDEREMLKLLYQTMRALTNP 126
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP-YAEK 182
I EL G G ++ +CV G + S + GG VC
Sbjct: 127 HIPDRLIRYIFELKAYCINGEGPEVFQCVSCGDKERPAVFSVRKGGLVCSECDRDIIDGI 186
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
L + + F +TD L+
Sbjct: 187 RLDNSTLYSMQYIESSKIEKLYTFNVTDKVLD 218
>gi|241895550|ref|ZP_04782846.1| recombination protein O [Weissella paramesenteroides ATCC 33313]
gi|241871128|gb|EER74879.1| recombination protein O [Weissella paramesenteroides ATCC 33313]
Length = 263
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
DAI++ R + EK+++++++TRQ G+ + ++R+G+S R Q + L +
Sbjct: 6 DAIVMYQRDHKEKDLMVKMLTRQAGKRMFYIRHGKSQRYQFSAEIQPLRTATFEGTINST 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + + L Y + + + +P YD++ LN
Sbjct: 66 GMSFINDVKATKDTSFLMTDIVLNAYMTYILGLIDAAFVDNQPIPRWYDLVIEALNKLNS 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I E+ LL G KCV+ G + L S + G +C+
Sbjct: 126 GLDPQGIANYFEIQLLPVFGMQPTWGKCVICGRSDLPLDFSEEFNGTLCQQH 177
>gi|196232564|ref|ZP_03131416.1| DNA repair protein RecO [Chthoniobacter flavus Ellin428]
gi|196223326|gb|EDY17844.1| DNA repair protein RecO [Chthoniobacter flavus Ellin428]
Length = 177
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 4/146 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M AI+L E ++I+ T G+ + + + + +L + +
Sbjct: 1 ME-TTTAILLRKTKLTETSLIVTWFTEANGKIQTVAKGARQPKSRFAGLLDLFFDCEIQF 59
Query: 59 R-SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
SR ++ + H L + + + P EL+D+L
Sbjct: 60 MRSRKSELHILREVVLRNPHEGLRLDYTRVALAAYFVELIELVTEPDHPARELHDLLMRA 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIG 143
K + E L + +G
Sbjct: 120 FGHLNEKPASLKALLHFESELARLLG 145
>gi|323141986|ref|ZP_08076837.1| DNA repair protein RecO [Phascolarctobacterium sp. YIT 12067]
gi|322413518|gb|EFY04386.1| DNA repair protein RecO [Phascolarctobacterium sp. YIT 12067]
Length = 253
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 9/187 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRL 62
DDA++L V+++ + T+++G+ + + +LQ + + +
Sbjct: 11 DDALVLHVKNWQTADKYAVCFTKEHGKLRFIAYGARYEKNIHGRLLQPFANLHIEVQ--- 67
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ K + Y + +R P ELY+ML L
Sbjct: 68 QGQKIDKLRSCELLQMPKSMDMQQMAYAAVASELTAVLTEDRVPQPELYEMLGAALAALM 127
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV---TQDLLWVSPKSGGAVCRSVGLPY 179
+ + + LL GF LT CV G Q+ W SP GG +C S Y
Sbjct: 128 QRNPRLVVLSYA-IKLLAATGFAPQLTHCVHCGEAVTAQENAWFSPLQGGLICSSCRSTY 186
Query: 180 AEKMLVL 186
L
Sbjct: 187 NGDGLEP 193
>gi|313884069|ref|ZP_07817835.1| DNA repair protein RecO [Eremococcus coleocola ACS-139-V-Col8]
gi|312620516|gb|EFR31939.1| DNA repair protein RecO [Eremococcus coleocola ACS-139-V-Col8]
Length = 270
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 9/210 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M + + I+L R Y E + +++V T ++G + ++++ + +
Sbjct: 1 MNERFEGIVLFNRPYKEDDALIKVFTDRFGTKMFYLKHVKKPNHPLASQMIPLTRHEFVG 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
L+ + + + +Y + + + P L LY +L L
Sbjct: 61 MIHDQGFSFLREGTSLDMYRSNQVDYKKQVYTAYISQLVDAAIDDNVPNLALYQLLRGSL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
V I +E+ LL G L+ C V Q+ S K G +C
Sbjct: 121 EQINQGQVPELITHFVEIHLLPLFGTQLNWQTCQVCDSQQEPADFSIKLQGRLCPHH--- 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
+ P + + + +L + L
Sbjct: 178 ----LNHDPYRMHLNPRALHIAALLAGLSL 203
>gi|90961871|ref|YP_535787.1| DNA repair protein [Lactobacillus salivarius UCC118]
gi|119361463|sp|Q1WTP7|RECO_LACS1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|90821065|gb|ABD99704.1| DNA repair protein [Lactobacillus salivarius UCC118]
Length = 260
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 20/248 (8%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
AI+ ++Y E+++++ + T +YG FVR + ++ +
Sbjct: 10 AIVTKRKNYRERDMLVTMFTDKYGFKTFFVRGVRKRGFKLGAAILPFTHGTYIGSINSEG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
+ ++ + L Y + + + ++ + L+
Sbjct: 70 LSFITATKGIDQFQSINQDIILNAYATYILELVKAAFEDSIDVTNTLWFEKVLKALSLIN 129
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I IE+ LL G + CV+ G TQ S GG +CR +
Sbjct: 130 DGFDAQIIANIIEVQLLGKFGVQPNWRSCVICGETQSQFDYSESYGGILCRKHWYMDKNR 189
Query: 183 -------MLVLPSFLWKEEQTID----ADSLKSAFQLTDYFLNKYALQHNIIHCHLLREN 231
M L F + ++ K +LT + + R
Sbjct: 190 LNLDQRTMYYLRKFSIVDLNYLNSIKVNADTKKKLKLT----LNEIYDNQVGIYVKARS- 244
Query: 232 FLGKLLEL 239
F+ K+ ++
Sbjct: 245 FIDKMTKV 252
>gi|325125923|gb|ADY85253.1| DNA repair protein recO protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 249
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 2/177 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++ + Y E +++ ++ T++ G + G + + + +R
Sbjct: 9 HGLLFKRQQYKEADLLAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGTFSILTRYK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L H Y E + YD+L + N
Sbjct: 69 GISQLRTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLLVAFNRIVA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I ++L LL G L CV+ G + + S +GG VC +
Sbjct: 129 GQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDHFRSVS 185
>gi|300933268|ref|ZP_07148524.1| DNA repair protein RecO [Corynebacterium resistens DSM 45100]
Length = 231
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 56/171 (32%), Gaps = 2/171 (1%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLAQNLG 67
L GE ++IL ++TR +G+ G + + + + L V V
Sbjct: 2 LRTYRLGEADLILVLLTRDHGQVRGVAKAIRKSKSRFGAKLDRFTRVNVQIYPGRGLANI 61
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
V + + G ++ F E L D L H+ +
Sbjct: 62 TDADAVESYASPIVADPDRYFAGCAALEVAQLFGGEDSSVFSLLDATLRDLAIHEPSLPL 121
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I + L L+ G+ L C G T P +GGAVC + P
Sbjct: 122 VNIVDRFVLHCLEIAGWAPSLVNCAQCGKTGPHRAFHPMAGGAVCVNCRPP 172
>gi|300214598|gb|ADJ79014.1| DNA repair protein recO (Recombination protein O) [Lactobacillus
salivarius CECT 5713]
Length = 260
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 20/248 (8%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
AI+ ++Y E+++++ + T +YG FVR + ++ +
Sbjct: 10 AIVTKRKNYRERDMLVTMFTDKYGFKTFFVRGVRKRGFKLGAAILPFTHGTYIGSINSEG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
+ ++ + L Y + + + ++ + L+
Sbjct: 70 LSFITATKDIDQFQSINQDIILNAYATYILELVKAAFEDSIDVTNTLWFEKVLKALSLIN 129
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I IE+ LL G + CV+ G TQ S GG +CR +
Sbjct: 130 DGFDAQIIANIIEVQLLGKFGVQPNWRSCVICGETQSQFDYSESYGGILCRKHWYMDKNR 189
Query: 183 -------MLVLPSFLWKEEQTID----ADSLKSAFQLTDYFLNKYALQHNIIHCHLLREN 231
M L F + ++ K +LT + + R
Sbjct: 190 LNLDQRTMYYLRKFSIVDLNYLNSIKVNADTKKRLKLT----LNEIYDNQVGIYVKARS- 244
Query: 232 FLGKLLEL 239
F+ K+ ++
Sbjct: 245 FIDKMTKV 252
>gi|327403370|ref|YP_004344208.1| DNA repair protein recO [Fluviicola taffensis DSM 16823]
gi|327318878|gb|AEA43370.1| DNA repair protein recO [Fluviicola taffensis DSM 16823]
Length = 235
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 2/151 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M QD AI+L Y E ++I+ + T + G + + + IL + + +
Sbjct: 1 MKIQDKAIVLSRSPYSESSLIVNLFTLESGLQTFLFQGARKKK-GLILFPLEIAEITYYK 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNIFLN 119
R +L + +L+ + L I L L + +L+ LN ++
Sbjct: 60 RNDSSLLKLTEMQALEPLHELVGNPLKSSIAFFISELLLICLRDNHQDKKLFHFLNEEIH 119
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
+ + + + K GF ++
Sbjct: 120 WLNTSEELSNYLIWLLAQVSKLEGFQPEIQH 150
>gi|116514233|ref|YP_813139.1| recombinational DNA repair protein RecO [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|122275035|sp|Q04A21|RECO_LACDB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116093548|gb|ABJ58701.1| DNA replication and repair protein RecO [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 249
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 2/177 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++ + Y E +++ ++ T++ G + G + + + +R
Sbjct: 9 HGLLFKRQQYKEADLLAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGTFSILTRYK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L H Y E + YD+L + N
Sbjct: 69 GISQLRTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLLVAFNRIVA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I ++L LL G L CV+ G + + S +GG VC +
Sbjct: 129 GQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDHFRSVS 185
>gi|227890897|ref|ZP_04008702.1| recombination protein O [Lactobacillus salivarius ATCC 11741]
gi|227867306|gb|EEJ74727.1| recombination protein O [Lactobacillus salivarius ATCC 11741]
Length = 260
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 20/248 (8%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
AI+ ++Y E+++++ + T +YG FVR + ++ +
Sbjct: 10 AIVTKRKNYRERDMLVTMFTDKYGFKTFFVRGVRKRGFKLGAAILPFTHGTYIGSINSEG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
+ ++ + L Y + + + ++ + L+
Sbjct: 70 LSFITATKGIDQFQSINQDIILNAYATYILELVKAAFEDSIDVTNTLWFEKVLKALSLIN 129
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
I IE+ LL G + CV+ G TQ S GG +CR +
Sbjct: 130 DGFDAQIITNIIEVQLLGKFGVQPNWRSCVICGETQSQFDYSESYGGILCRKHWYMDKNR 189
Query: 183 -------MLVLPSFLWKEEQTID----ADSLKSAFQLTDYFLNKYALQHNIIHCHLLREN 231
M L F + ++ K +LT + + R
Sbjct: 190 LNLDQRTMYYLRKFSIVDLNYLNSIKVNADTKKRLKLT----LNEIYDNQVGIYVKARS- 244
Query: 232 FLGKLLEL 239
F+ K+ ++
Sbjct: 245 FIDKMTKV 252
>gi|326773537|ref|ZP_08232820.1| DNA repair protein RecO [Actinomyces viscosus C505]
gi|326636767|gb|EGE37670.1| DNA repair protein RecO [Actinomyces viscosus C505]
Length = 249
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 12/208 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AIIL GE + I+ ++TR +G+ + + R L+ ++ V +
Sbjct: 6 YRDEAIILRTYKLGEADRIIVMLTRHHGQVRAVAKGVRRTTSRFGARLEPFSMTDVQLHA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-----EPCLELYDMLN 115
++ + ++F + R + E + Y +L
Sbjct: 66 GRTLDVVTQAEIIDPFGRVVSADYAMFTCASTMVETAERLSADDGDLGTEASPQQYLLLA 125
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
L + ++ LL+ + G+ C + G ++GGAVC
Sbjct: 126 GALAAMSHRRHAPGL--ILDSYLLRALALGGWAPSCYDCALCGAPGPHRAFHIQAGGAVC 183
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDAD 200
S A ++ L + D
Sbjct: 184 ESCRSAGAVEVEPATMALLGALLSGDWA 211
>gi|313204665|ref|YP_004043322.1| DNA repair protein reco [Paludibacter propionicigenes WB4]
gi|312443981|gb|ADQ80337.1| DNA repair protein RecO [Paludibacter propionicigenes WB4]
Length = 240
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRVN 57
M + IIL Y + I+ V T+Q+GR V + +LQ ++V ++
Sbjct: 1 MLSKTTGIILHSIKYTDSASIVTVYTQQFGRVSYMVHGVNKKKSMCRAALLQPLSMVEMD 60
Query: 58 -WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + L LF+ L + EP LY L
Sbjct: 61 VFHVPGKDIQRIKDLRMNYQFTGIPFNPVKNSLALFLSEVLFKSLRQTEPDENLYLFLEN 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLD 147
+ F + + + +GF +
Sbjct: 121 SIQQLDCCEEGIANFHLVFLIKMSRYLGFAPN 152
>gi|302343330|ref|YP_003807859.1| DNA repair protein RecO [Desulfarculus baarsii DSM 2075]
gi|301639943|gb|ADK85265.1| DNA repair protein RecO [Desulfarculus baarsii DSM 2075]
Length = 253
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI---LQAGNLVRVNWRS 60
+D A++L +R GE +++++ R+ GR + + R + L L W S
Sbjct: 6 RDHALVLRLRELGESDLLVDFFGRRIGRGTAIAKGARRSRKRFFGLLLVGHLLELELWPS 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +LE+H A +L+G + L R +P D+ L+
Sbjct: 66 KSGDLWRLEAAWLLENHQALRADWRRWLFGAPVLELLLRATASHDPHPAALDLALRALSA 125
Query: 121 HKIPSVIGKIFVQIELMLL---KNIGFGLDLTKCVVTG 155
S + ++ + L +G+GL L CV G
Sbjct: 126 CGQASDKKLLASRLLVFCLLLASELGYGLSLEHCVRCG 163
>gi|325290524|ref|YP_004266705.1| DNA replication and repair protein RecO [Syntrophobotulus
glycolicus DSM 8271]
gi|324965925|gb|ADY56704.1| DNA replication and repair protein RecO [Syntrophobotulus
glycolicus DSM 8271]
Length = 247
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 4/163 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ DAI++ R YGE + +L + R+ G+ + + + + Q
Sbjct: 4 YHADAIVIRTREYGEADKLLTLFAREKGKLEVIAKGARKPASKQRGGTQLFTYADF-LIY 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ES + G L +P +++ + FL
Sbjct: 63 KGKTLDLINQVHPKESFGHIWKDFDRNIAGTAMAELLDAATIREQPEPQVFVLFLSFLFL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ L++ +G+ D+ C+ G +
Sbjct: 123 LEGIDPYLAQAAFSLR-LMRLLGYLPDIGACLDCGESSPEKQY 164
>gi|323144162|ref|ZP_08078798.1| DNA repair protein RecO [Succinatimonas hippei YIT 12066]
gi|322416070|gb|EFY06768.1| DNA repair protein RecO [Succinatimonas hippei YIT 12066]
Length = 246
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 54/148 (36%), Gaps = 4/148 (2%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRL 62
A ++ R Y E ++++E T +GR + + + +LQ ++V++ +
Sbjct: 8 SPAFVIHSREYHEHSLLIEFFTLNHGRVAAIAKRVKTVRSSFKYLLQPFFPLKVSF--KQ 65
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
++ ++V S + L+ ++ +L+ L
Sbjct: 66 GKSDLWQVYDVEPSGELISFAVPEIFCASYLNELLYYLYKSKDSDPKLFASYLETLKSIS 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTK 150
+ K + E LL ++G+G+
Sbjct: 126 EKISLDKALREFEFALLDSLGYGIRFED 153
>gi|301300989|ref|ZP_07207152.1| DNA repair protein RecO [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851405|gb|EFK79126.1| DNA repair protein RecO [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 4/173 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
AI+ ++Y E+++++ + T +YG FVR + ++ +
Sbjct: 10 AIVTKRKNYRERDMLVTMFTDKYGFKTFFVRGVRKRGFKLGAAILPFTHGTYIGSINSEG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
+ ++ + L Y + + + ++ + L+
Sbjct: 70 LSFITATKGIDQFQSINQDIILNAYATYILELVKAAFEDSIDVTNTLWFEKVLKALSLIN 129
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I IE+ LL G + CV+ G TQ S GG +CR
Sbjct: 130 DGFDAQIIANIIEVQLLGKFGVQPNWRSCVICGETQSQFDYSESYGGILCRKH 182
>gi|317472457|ref|ZP_07931780.1| DNA repair protein RecO [Anaerostipes sp. 3_2_56FAA]
gi|316900075|gb|EFV22066.1| DNA repair protein RecO [Anaerostipes sp. 3_2_56FAA]
Length = 246
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 2/179 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ ++L + GE + + ++T++ GR F R + L +
Sbjct: 4 EIKVTGLVLNAGNIGEFDKRVTLLTKERGRITAFARGAKKATSPYAAACQPLTFGEFSLY 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM--LNIFLN 119
++ + + + + L + +L +
Sbjct: 64 EGRSSFNLMWADVGHYFEGVKEDLLLVSYGSYFCEFASYLTRENNDEKEILKLLYLSLRA 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K I E+ L+ G G+++ C G T+DL + SGG +C +
Sbjct: 124 LEKKTIDPKLIRRVYEIKLMALYGQGMEVFCCTQCGSTEDLSYFDSGSGGILCSNCTKS 182
>gi|227878693|ref|ZP_03996607.1| recombination protein O [Lactobacillus crispatus JV-V01]
gi|256843287|ref|ZP_05548775.1| DNA repair protein RecO [Lactobacillus crispatus 125-2-CHN]
gi|256850356|ref|ZP_05555784.1| DNA repair protein recO [Lactobacillus crispatus MV-1A-US]
gi|262046496|ref|ZP_06019458.1| DNA repair protein RecO [Lactobacillus crispatus MV-3A-US]
gi|293380130|ref|ZP_06626217.1| DNA repair protein RecO [Lactobacillus crispatus 214-1]
gi|312978178|ref|ZP_07789922.1| DNA repair protein RecO [Lactobacillus crispatus CTV-05]
gi|227861708|gb|EEJ69313.1| recombination protein O [Lactobacillus crispatus JV-V01]
gi|256614707|gb|EEU19908.1| DNA repair protein RecO [Lactobacillus crispatus 125-2-CHN]
gi|256712753|gb|EEU27746.1| DNA repair protein recO [Lactobacillus crispatus MV-1A-US]
gi|260573367|gb|EEX29925.1| DNA repair protein RecO [Lactobacillus crispatus MV-3A-US]
gi|290923300|gb|EFE00216.1| DNA repair protein RecO [Lactobacillus crispatus 214-1]
gi|310894896|gb|EFQ43966.1| DNA repair protein RecO [Lactobacillus crispatus CTV-05]
Length = 251
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II + Y E +++ ++MT+Q G V+ + + N + ++
Sbjct: 9 QGIIFKRQKYKEADLLAKIMTKQDGIMTLIVKGALRPKSRLSAATLNFSIGTYVIYTSEK 68
Query: 66 LGEFRFEVLESHC--AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + Y + E +P + YD+ L
Sbjct: 69 GLSNLRTYKGARQFDGLYNDLTKNAYISFIFDLIDHAFVEYQPIGKYYDLALFALKKIDS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +++ +L G L CV+ G + + S K GG +C +M
Sbjct: 129 GVDAEMITQIVQMKILAAYGVEPQLKHCVICGKEKGVFDYSIKMGGVICSDHFSTVTSRM 188
Query: 184 LVLPS 188
+ P
Sbjct: 189 HLKPK 193
>gi|54296964|ref|YP_123333.1| DNA repair protein recO [Legionella pneumophila str. Paris]
gi|81601917|sp|Q5X6G0|RECO_LEGPA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|53750749|emb|CAH12156.1| DNA repair protein recO [Legionella pneumophila str. Paris]
Length = 229
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ + G+ + L++ TR+ G + G++ + Q +LQA + W S +
Sbjct: 8 AWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPL---WVSIEERYD 64
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + L GL L+ L P +L+D LN +
Sbjct: 65 QYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIALARE 124
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I + E LLK G+ TG L V V + +K
Sbjct: 125 REAIEALLRRFEWALLKACGYTFSFLHEARTG----ELIVPDSHYQFVAGEGFILGGDKK 180
Query: 184 LVLPSFLWKEEQTIDADSLKSAFQLT 209
+ L + + + +
Sbjct: 181 IPGEHLLAIAADNLSESAYLKSAKFI 206
>gi|319792227|ref|YP_004153867.1| DNA repair protein reco [Variovorax paradoxus EPS]
gi|315594690|gb|ADU35756.1| DNA repair protein RecO [Variovorax paradoxus EPS]
Length = 257
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSR 61
+ A +L + E ++ILEV TR +GR + + S +P+L +++N+
Sbjct: 9 HEPAYVLHRYDWSESSLILEVFTRHHGRIALVAKGAKRPSSNFRPVLLPLQPLQLNY--- 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L G L R L + L+D +
Sbjct: 66 GGDAEIRTLKGAEWMGGHVMPTGEALLSGYYINELLLRLLARDDAHEALFDAYAGVVQVL 125
Query: 122 KIPSVIGKIFVQ------IELMLLKNIGFGLDLT 149
V + Q EL+LL+ +G L
Sbjct: 126 AGDHVGAQAATQAAALRAFELILLREVGLLPSLD 159
>gi|313123893|ref|YP_004034152.1| DNA repair protein reco [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280456|gb|ADQ61175.1| DNA repair protein recO [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 249
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 2/177 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++ + Y E +I+ ++ T++ G + G + + +R
Sbjct: 9 HGLLFKRQQYKEADILAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGTFGILTRYK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ L H Y E + YD+L + N
Sbjct: 69 GISQLWTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLLVAFNRIVA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I ++L LL G L CV+ G + + S +GG VC +
Sbjct: 129 GQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDHFRSVS 185
>gi|268611991|ref|ZP_06145718.1| DNA replication and repair protein RecO [Ruminococcus flavefaciens
FD-1]
Length = 255
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+ I+L RS GE++ ++++TR G V+ + + Q R R
Sbjct: 13 EGIVLRERSVGEQDKFIDILTRDRGVLEASVKGARKINGKSGSSSQLFAYSRFCLDQRR- 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-K 122
L E L S + L + ++ + L+ K
Sbjct: 72 NMLYLNSAEPLHIFYGLRDSLTKISLASYFSEVLRFCVIPEAQNNDILRLTLNCLHYLEK 131
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ EL L+ IGF D+ C G + + G
Sbjct: 132 NERSEEFLKAVFELRLMSEIGFMPDIVACRECGTFEPEEIFFSITDG 178
>gi|94502129|ref|ZP_01308630.1| DNA repair protein RecO [Oceanobacter sp. RED65]
gi|94425731|gb|EAT10738.1| DNA repair protein RecO [Oceanobacter sp. RED65]
Length = 244
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 12/236 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS-HRMQPILQAGNLVRVNWRSR 61
+ A +L R Y E + +++ T YG R + ++ Q LQ L + +
Sbjct: 2 IKQRAYLLHSRPYKETSALVDFFTPDYGHIRCMARGVKKANKYQQPLQPFTLYTIFFHGD 61
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLN 119
+ LS + G L R L L+D L
Sbjct: 62 SGLKN---LDKFEIFSLPLNLSGNPLFSGFYINEVLLRALRSDAEVESQSLFDAYEDVLA 118
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL LL+++G + T D V Y
Sbjct: 119 SLN-SEGLELSLRLFELSLLEHMGQQYEWALDFRTESMVDDNAFYGFFVEQGMARVSQKY 177
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKS--AFQLTDYFLNKYALQHNIIHCHL-LRENF 232
A F E + + L ++ + AL+ I + + RE
Sbjct: 178 ANSNPN-AVFRGNELKALSHGELLDQNVLKMCKRLF-RLALRPIIGYKPIQARELL 231
>gi|259046830|ref|ZP_05737231.1| DNA repair protein RecO [Granulicatella adiacens ATCC 49175]
gi|259036453|gb|EEW37708.1| DNA repair protein RecO [Granulicatella adiacens ATCC 49175]
Length = 260
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 70/172 (40%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
D I++ ++Y EK+++++++TR +G+ + F+RN Q R + + QN
Sbjct: 8 DGIVIMRQTYREKDMLVKILTRDHGKLMFFLRNAQQSNHPLTAATQVFTRATFLGHIHQN 67
Query: 66 LGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREP-CLELYDMLNIFLNCHKI 123
F + + A + L L + L + + ++ +L +
Sbjct: 68 GFSFLKDSHDIKPATIVLQDVKAQAVLAYLTQLTDAVMDDHIVNKTVFQLLWDSIEAINN 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I E+ +L+ G ++ CV+ DL+ S + G +C++
Sbjct: 128 GIDAEVILRFFEIKILRYFGVEVEWQHCVICNRDTDLVDFSIQKHGCLCKNH 179
>gi|260910951|ref|ZP_05917592.1| recombination protein O [Prevotella sp. oral taxon 472 str. F0295]
gi|260634942|gb|EEX52991.1| recombination protein O [Prevotella sp. oral taxon 472 str. F0295]
Length = 242
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L YG+ +I +++T +GR ++ + + + Q L+ +
Sbjct: 1 MLVKTHAIVLRSLKYGDSQLITDLLTEAFGRVSFVSSIPRTQKAKIKKQLFQPLTLLEIE 60
Query: 58 WRSRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + + + S + L L + + + LY +
Sbjct: 61 FDHRPNARLQRLRDARMTYPFTSIPYSEAKLAIALFVAEFLSHATRDEQQNVSLYKYVET 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVV 153
+ F + L + +GF +L
Sbjct: 121 SVRWLDGAQHAFANFHLAFMIRLSRFLGFYPNLDDYTR 158
>gi|317132161|ref|YP_004091475.1| DNA repair protein RecO [Ethanoligenens harbinense YUAN-3]
gi|315470140|gb|ADU26744.1| DNA repair protein RecO [Ethanoligenens harbinense YUAN-3]
Length = 265
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 2/156 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLA 63
D +++ + GE + L ++TR+YG R + + L ++ +
Sbjct: 17 TDGLVIRDYNVGEADRFLTLLTRKYGAIRASARGARRIKSGVSTGTQLLCHADFTLFKGR 76
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK- 122
+ L P+ E ++ L +
Sbjct: 77 EKYIIDEATPLTLFMGIRAELEKLALAQYFCELEDFLAPKEEEAELFLRLILNALALLEA 136
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+I E+ LL G+ DL C G +
Sbjct: 137 GKHPSMQIKAAFEMRLLAISGYMPDLVACAGCGTYE 172
>gi|325068603|ref|ZP_08127276.1| DNA replication and repair protein RecO [Actinomyces oris K20]
Length = 249
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 12/208 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AIIL GE + I+ ++TR +G+ + + R L+ ++ V +
Sbjct: 6 YRDEAIILRTYKLGEADRIIVMLTRHHGQVRAVAKGVRRTTSRFGARLEPFSMTDVQLHA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-----EPCLELYDMLN 115
++ + ++F + R + E + Y +L
Sbjct: 66 GRTLDVVTQAEIIDPFGRVVSADYAMFTCASTMVETAERLSADDGDLGTEASPQQYLLLA 125
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
L + ++ LL+ + G+ C + G ++GGAVC
Sbjct: 126 GALAAMSHRRHAPGL--ILDSYLLRALALGGWAPSCYDCALCGAPGPHRAFHIQAGGAVC 183
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDAD 200
S A ++ L + D
Sbjct: 184 ESCRSAGAVEVEPSTMALLGALLSGDWA 211
>gi|329954163|ref|ZP_08295258.1| DNA repair protein RecO [Bacteroides clarus YIT 12056]
gi|328528140|gb|EGF55120.1| DNA repair protein RecO [Bacteroides clarus YIT 12056]
Length = 242
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q +LV +
Sbjct: 1 MLQKTQGIVLHSLKYKDTSIIVDIYTEVSGRASFLVPVSRSRKAAVKSVLFQPLSLVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L + L L+R L E L+ L
Sbjct: 61 ADFRPNTTIYKVKEAKSLYPFTSIPYDPYKSAIALFLSEFLYRALREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ S + + L + +G +L
Sbjct: 121 SIVWLDECGSGFANFHLVFLMRLSRFLGLYPNLEDYHSGDYFD 163
>gi|309388939|gb|ADO76819.1| DNA repair protein RecO [Halanaerobium praevalens DSM 2228]
Length = 256
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 21/244 (8%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS-HRMQPILQAGNLVRVNWRSR 61
++ +A++L GE + ++ + T++ G+ + + + + L +
Sbjct: 4 FETEALVLKQFDLGEADRLITLYTKEKGKLKAVAKGARKGKKTRSGLVLPFSYHNFTLYQ 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
E + + Y + R E E L+ +L I L
Sbjct: 64 GRSLAKINHIESIAMNSKLRDDLDYMAYASVVSEYIERSGLEAEADQALFSLLAIILEKM 123
Query: 122 KIPSVIG--KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
FV + LL +G ++ C V G +L +P S +
Sbjct: 124 AQAKKNELLFNFVIFKAKLLLLLGVKPEIENCTVCGKKVNLKKGAPLSVEEGGTICKNCF 183
Query: 180 AEKMLVLPSFL-----------------WKEEQTIDADSLKSAFQLTDYFLNKYA-LQHN 221
+ + ++ +L+ ++T+ FL + L+
Sbjct: 184 NQNEYYKSTVFSLSEMRVLYKIIFAEISQLKKARFSDQTLEKINKITEKFLVYHLELEPK 243
Query: 222 IIHC 225
+
Sbjct: 244 SLSF 247
>gi|256545609|ref|ZP_05472967.1| DNA repair protein RecO (recombination protein O) [Anaerococcus
vaginalis ATCC 51170]
gi|256398686|gb|EEU12305.1| DNA repair protein RecO (recombination protein O) [Anaerococcus
vaginalis ATCC 51170]
Length = 252
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 8/185 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+ +L SY E + I+E+ T+ G+ + + + + V+ ++ + +
Sbjct: 10 EGFVLREFSYRESSKIIEIFTKDMGKISVIAKGVLNKKNSNLSSTQRFVKASYNLYKSGE 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
R L +K + + +I L + + +Y++L+ + +
Sbjct: 70 KFFGIRDASLLKSYSKSNKNFDIIIYKSAICDLLLKTIDYDQKDLVYNLLDKTFDSFEKA 129
Query: 125 SVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGLPY 179
LLK I GF +L +C + G + + S K GG VC S
Sbjct: 130 --SENYLNIFLCFLLKYISFSGFKPNLKECSLCGSKINPSDAYFSIKDGGIVCSSCKKIK 187
Query: 180 AEKML 184
+ +
Sbjct: 188 KDIVY 192
>gi|212702602|ref|ZP_03310730.1| hypothetical protein DESPIG_00628 [Desulfovibrio piger ATCC 29098]
gi|212674043|gb|EEB34526.1| hypothetical protein DESPIG_00628 [Desulfovibrio piger ATCC 29098]
Length = 250
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M W D A++L + ++ E +I L+++ R++G F G R + L N ++
Sbjct: 1 MEWTDQALVLRMGAFRESDIWLKLLCREHGLLTLFAFGGSRSRRRFCGCLDVLNSLQCRV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIF 117
RS L L + + + + + E + ++
Sbjct: 61 RSSKDGRFLNLEEAALLQGPRLLRRNWQRMGLAANCLRFVEAMGVGEDAAPEAFLLVEDL 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTG 155
+ + L L +GF +L +C G
Sbjct: 121 RAVLEAEKAPPVLLPLYFRLRLAGALGFAPNLGQCGRCG 159
>gi|306820782|ref|ZP_07454407.1| recombination protein O [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551172|gb|EFM39138.1| recombination protein O [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 259
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 8/233 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + +AII+ + Y E + I+ T+++G+ F + + + + V+
Sbjct: 1 MNVETEAIIIKTQKYKEFDEIVTAFTKKFGKINMFAHSSKKVKSPLLSGTQLFGHVDMEI 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE-PCLELYDMLNIFLN 119
L ++ ++ K Y + + + + L+ N
Sbjct: 61 DLRESSSRLFSSKIKKSYYKFSEDLHKYYLASYLCEMIEKTQQENITDIRLFKTTLEIFN 120
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLL-WVSPKSGGAVCRSVGL 177
+ K+ EL+LL+N+G L C+ + S G+V +
Sbjct: 121 YIENTKGKLKLIRLVFELILLRNLGVSPQLDCCIFCDTDDTEILRYIDISQGSVVCDNCV 180
Query: 178 PYAEKM--LVLPSFLWKEEQTIDADSLKSAF--QLTDYFLNK-YALQHNIIHC 225
+ + L + + + ++ L + ++ D L + N I+
Sbjct: 181 KKSMISHPYRMDRNLIRFMKYVYSNDLSNVLEVKIADILLEQLDVFIQNYINY 233
>gi|326381619|ref|ZP_08203313.1| DNA repair protein RecO [Gordonia neofelifaecis NRRL B-59395]
gi|326199866|gb|EGD57046.1| DNA repair protein RecO [Gordonia neofelifaecis NRRL B-59395]
Length = 273
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRLAQNLG 67
L GE + I+ +T ++G + + + L+ V V++
Sbjct: 2 LRQHKLGEADRIITFLTAEHGLVRAVAKGVRRTRSKFGARLEPFAHVDVHFYP-GRNLDV 60
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + L + +++ +++ L E + +
Sbjct: 61 ITQVDSLHAFSDDIVADYGRYTTACAVLETAERLAGEERAPAQHLHRLTVGALAALAEDR 120
Query: 128 GKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++ LL+ + G+ L+ C +GGAVC
Sbjct: 121 RDRQLILDAFLLRAMSSAGWMPALSVCARCAQPGPHRAFHVAAGGAVCIHC 171
>gi|300173397|ref|YP_003772563.1| DNA repair protein RecO [Leuconostoc gasicomitatum LMG 18811]
gi|299887776|emb|CBL91744.1| DNA repair protein RecO [Leuconostoc gasicomitatum LMG 18811]
Length = 263
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 17/237 (7%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS---RL 62
I+L R Y + ++++ ++T G R + + V + +
Sbjct: 5 KGIVLYTRQYKDNDLLVRMLTETRGLRTFLARGAKKQKSHLSAAMQPYTVVTFEGAFAKR 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNIFLNCH 121
LG ++ +L+ I L E E Y+ L + L
Sbjct: 65 TVGLGYINDIQQATYHRRLVDDIEANAYAALIASLIDETFEEGEVITRWYNQLLLALLKL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I E+ LL +G + ++G T S K G + +
Sbjct: 125 DEGLDPQIIANIFEIQLLVPLGVAPNWRADPISGQTTGRFDYSEKYNGIIAENHYELDEH 184
Query: 182 KMLVLPS--FLWKEEQTIDADSLKS---------AFQLTDYFL-NKYA-LQHNIIHC 225
++++ F ++ ID + Q ++ + L+
Sbjct: 185 RLMIDQKTMFYLRQFSVIDLRQIHQIKISTTTKRGLQRVIDYIYDNQLGLKPRAKKF 241
>gi|224536621|ref|ZP_03677160.1| hypothetical protein BACCELL_01496 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521712|gb|EEF90817.1| hypothetical protein BACCELL_01496 [Bacteroides cellulosilyticus
DSM 14838]
Length = 244
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 5/169 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + ++I ++ T GR V+ +S + + Q LV +
Sbjct: 1 MLQKTLGIVLHTLKYNDTSLIADIYTETAGRASFIVKIPRSRKAAVKSVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R ++ + + + L L+R + E L+ L
Sbjct: 61 ADFRSNASMYKITEAKSYYPFSSIPYDPYKSSIALFLAEFLYRAVREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVS 164
+ + + L + +G +L L
Sbjct: 121 SIIWLDECRDSFANFHLVFLMRLSRFLGLYPNLEDYENGDYFDLLNACF 169
>gi|254421751|ref|ZP_05035469.1| DNA repair protein RecO [Synechococcus sp. PCC 7335]
gi|196189240|gb|EDX84204.1| DNA repair protein RecO [Synechococcus sp. PCC 7335]
Length = 368
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 12/251 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRS 60
++ I L GE + ++ V+T++YG + H+ + ++G V
Sbjct: 5 NYKATGINLKGMPMGEADRLVTVLTKEYGLVRAIAPGARKHKSKLAGRSGLFVVNEVLFV 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E + S + +P ELY +L L
Sbjct: 65 KGKSLDKLVQAETVRSFPGLSKDLAKLTASQYLAEIALALALSEQPQAELYYLLIEHLGR 124
Query: 121 HKIPSVIGKIFVQIE--LMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVG 176
+ + + LL G ++ +C ++ DL + +VC
Sbjct: 125 IESAPTAHVLACLAQATFHLLALAGVAPEVHRCCLSRSPLAIDLSNPDWRVAFSVCSGGA 184
Query: 177 LPYAEKMLVLPSFLWKEEQTID--ADSLKSAFQLTDYFLNK---YALQHNIIHCHLLREN 231
+ E + +L + +Q ID D +A + +Y ++ A + + +
Sbjct: 185 VALEEVERLENEYLQEVKQQIDSQKDDWIAAEETAEYSISSSYPRASKPSNTDAPASKRT 244
Query: 232 FL--GKLLELI 240
+L I
Sbjct: 245 LTMSSRLRRQI 255
>gi|37519653|ref|NP_923030.1| DNA repair protein RecO [Gloeobacter violaceus PCC 7421]
gi|62287453|sp|Q7NPH1|RECO_GLOVI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|35210644|dbj|BAC88025.1| gll0084 [Gloeobacter violaceus PCC 7421]
Length = 261
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 3/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ I L GE ++++ ++TR+ G R + + + V + + R
Sbjct: 6 YRATGINLRRMPLGESDLLMTILTRENGLVRAVARGARKANARIGGRTEQFVVNDLQLYR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E L + L + + E + +LYD+L + L
Sbjct: 66 GRSLDQLTQAESLRTFPGLLQDLGRLTAAQYLAEGVLQEATEGQAQEDLYDLLLVHLERL 125
Query: 122 KIPSVIGKIFVQIE--LMLLKNIGFGLDLTKCVVTG 155
+ LL G ++ C V+
Sbjct: 126 AATPSHQIAARLVHGVYQLLAVGGVAPEVHFCTVSH 161
>gi|325686030|gb|EGD28088.1| DNA repair protein RecO [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 249
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 2/177 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++ + Y E +I+ ++ T++ G + G + + +R
Sbjct: 9 HGLLFKRQQYKEADILAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGTFGILTRYK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ L H Y E + YD+L + N
Sbjct: 69 GISQLWTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLLVAFNRIVA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I ++L LL G L CV+ G + + S +GG VC
Sbjct: 129 GQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDHFRSVN 185
>gi|302874335|ref|YP_003842968.1| DNA repair protein RecO [Clostridium cellulovorans 743B]
gi|307689398|ref|ZP_07631844.1| DNA repair protein RecO [Clostridium cellulovorans 743B]
gi|302577192|gb|ADL51204.1| DNA repair protein RecO [Clostridium cellulovorans 743B]
Length = 235
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 3/197 (1%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQNLGE 68
L + E + ++ V T +G+ V+ + + + +
Sbjct: 2 LKAQDIKESDKLVTVFTEDFGKMNILVKGANRAKSAMLPLTLQFCFCDLVLFKGKSMYTI 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP-SVI 127
V+ES L YG I + L E E ++ L K S +
Sbjct: 62 NEGNVIESFQNFLEDIDSLAYGSYLIELIDISLSEGEVNQYIFRELITCYYIMKNRASSM 121
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
I V + LL G G+ L +C V + + ++ G +C S +
Sbjct: 122 EAIVVYFQCKLLYYTGHGITLDRCSVCKSKIISSNYFNFQTIGGICNSCEKKNGISVSYE 181
Query: 187 PSFLWKEEQTIDADSLK 203
L K I + +
Sbjct: 182 AYSLLKYIMKIKLEDIA 198
>gi|260583652|ref|ZP_05851400.1| DNA repair protein RecO [Granulicatella elegans ATCC 700633]
gi|260158278|gb|EEW93346.1| DNA repair protein RecO [Granulicatella elegans ATCC 700633]
Length = 267
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L + Y E ++I+++ +R++G+ + FVRN Q R + + QN
Sbjct: 8 TGIVLFRQEYKEHDMIVKIFSREFGKQMFFVRNLQRSSHPLSAATLPFTRAVFIGTIHQN 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP--CLELYDMLNIFLNCHKI 123
F E LE + + + + + + + + ELYD+L + +
Sbjct: 68 GFSFIRECLEVQNHRRIYEQIEVQAVMTYMMQLVDAVMEDRIVNTELYDLLENCIRAVEN 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ EL +LK G +C + +S K G +C +++
Sbjct: 128 DLDPFILMHYFELKMLKYFGVAFQWQQCCFCEESVGPFDISLKHHGLLCSRHYDKDEKRL 187
Query: 184 LVLPS 188
+ P
Sbjct: 188 QLSPK 192
>gi|104774143|ref|YP_619123.1| DNA repair protein RecO (recombination protein O) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|300812203|ref|ZP_07092645.1| DNA repair protein RecO [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|119361462|sp|Q1G9W7|RECO_LACDA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|103423224|emb|CAI98052.1| DNA repair protein RecO (Recombination protein O) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|300496839|gb|EFK31919.1| DNA repair protein RecO [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 249
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 2/177 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++ + Y E +++ ++ T++ G + G + + +R
Sbjct: 9 HGLLFKRQQYKEADLLAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGTFGILTRYK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L H Y E + YD+L + N
Sbjct: 69 GISQLRTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLLVAFNRIVA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
I ++L LL G L CV+ G + + S +GG VC +
Sbjct: 129 GQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDHFRSVS 185
>gi|256820982|ref|YP_003142261.1| DNA repair protein RecO [Capnocytophaga ochracea DSM 7271]
gi|256582565|gb|ACU93700.1| DNA repair protein RecO [Capnocytophaga ochracea DSM 7271]
Length = 238
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
MY + AI++ Y + ++I++ T+ G ++ + + + Q L+ +
Sbjct: 1 MYDKVRAIVISSLKYSDNSLIVKCFTQTMGTRSYLLQGVLAQKKGNLKTALFQPFMLLEL 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ LG + + + + + P E++ L
Sbjct: 61 VATHKNNGTLGRVKEAKIAVPYYSLHTDMYKSAVSMFLSEVCAFVCTSEAPDEEMFLFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L ++ L + + +GF D T
Sbjct: 121 QKLLFFDRNDFSANFHLKFLLDITRYLGFYPDTTH 155
>gi|238854657|ref|ZP_04644987.1| DNA repair protein RecO [Lactobacillus jensenii 269-3]
gi|260664400|ref|ZP_05865252.1| DNA repair protein RecO [Lactobacillus jensenii SJ-7A-US]
gi|282932952|ref|ZP_06338349.1| DNA repair protein RecO [Lactobacillus jensenii 208-1]
gi|313472196|ref|ZP_07812688.1| DNA repair protein RecO [Lactobacillus jensenii 1153]
gi|238832447|gb|EEQ24754.1| DNA repair protein RecO [Lactobacillus jensenii 269-3]
gi|239529576|gb|EEQ68577.1| DNA repair protein RecO [Lactobacillus jensenii 1153]
gi|260561465|gb|EEX27437.1| DNA repair protein RecO [Lactobacillus jensenii SJ-7A-US]
gi|281302987|gb|EFA95192.1| DNA repair protein RecO [Lactobacillus jensenii 208-1]
Length = 251
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 2/184 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLA 63
I+ + Y E +++ +++++ G VR + + + A + + +
Sbjct: 9 TGIVFKRQRYKEADVLAKIISKDMGIFTMLVRGALRPKSKLSASVLAFSFGKYQVLTSQK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ ++ +L Y L E + Y ++ + L+
Sbjct: 69 GLSTLKTYKDVKQFTNLYSDLTLNSYACYLCDLLDHAFIEYQSLGNFYKLILVALDKLNA 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL +L G L +C + G T S +GG +C+ A
Sbjct: 129 GVDPEIICQLVELQMLAVYGVRPQLKQCAICGETHGPFDYSISAGGIICQKHFNQIARMH 188
Query: 184 LVLP 187
L
Sbjct: 189 LNDK 192
>gi|302344974|ref|YP_003813327.1| DNA repair protein RecO [Prevotella melaninogenica ATCC 25845]
gi|302149782|gb|ADK96044.1| DNA repair protein RecO [Prevotella melaninogenica ATCC 25845]
Length = 241
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN---GQSHRMQPILQAGNLVRVN 57
M + AI+L +G+ +I+++ T GR R + + Q L+ +
Sbjct: 1 MILKSKAIVLRSLKFGDSLLIIDMFTELEGRISFITRIPKTAKGKIKKQYFQPLTLLDLE 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R +L + + + + L L+ + LY+ +
Sbjct: 61 FDYRPRTSLQRIKEVRILRPYGSIPFDPVKSAILLFLSEFLYYVTRGEQQNAHLYNYICA 120
Query: 117 FLNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + IGF +L
Sbjct: 121 SMEWLDEAEHDYANFHLVFMMRLSRFIGFFPNLDAY 156
>gi|73662499|ref|YP_301280.1| recombination protein O [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|92087035|sp|Q49Y09|RECO_STAS1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|72495014|dbj|BAE18335.1| putative recombination protein O [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 251
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + II+ YGE + I+ ++ + VR + + V +
Sbjct: 1 MLIKQKGIIIKTIDYGESDKIITILNEYGAKVPLMVRRAKKSKSGLQANTQLFVYGLFIY 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
S+ +V++ + L Y + R + Y++L+ L+
Sbjct: 61 SKWKGMGTLSSVDVIDQNYHLRLDIYESSYASLCTETIDRSMETDGISKNSYELLHFVLD 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ + V + L + GF +CV+T L+ S K GA+ +V
Sbjct: 121 KIRQGISAQLMSVVVLLKCMTKFGFNAVFDRCVITQSEDQSKLVGYSFKYDGAISENVAY 180
Query: 178 PYAE 181
Sbjct: 181 KDTH 184
>gi|49483814|ref|YP_041038.1| recombination protein O [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425691|ref|ZP_05602115.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428352|ref|ZP_05604750.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430989|ref|ZP_05607369.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
68-397]
gi|257433677|ref|ZP_05610035.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus E1410]
gi|257436591|ref|ZP_05612635.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus M876]
gi|282904148|ref|ZP_06312036.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C160]
gi|282905975|ref|ZP_06313830.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908885|ref|ZP_06316703.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282914373|ref|ZP_06322159.1| DNA repair protein RecO family protein [Staphylococcus aureus
subsp. aureus M899]
gi|282919342|ref|ZP_06327077.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C427]
gi|282924667|ref|ZP_06332335.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C101]
gi|283958330|ref|ZP_06375781.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293503447|ref|ZP_06667294.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
58-424]
gi|293510464|ref|ZP_06669170.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus M809]
gi|293531004|ref|ZP_06671686.1| DNA repair protein RecO family protein [Staphylococcus aureus
subsp. aureus M1015]
gi|295428144|ref|ZP_06820776.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|56749561|sp|Q6GGD4|RECO_STAAR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|49241943|emb|CAG40638.1| putative recombination protein O [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257271385|gb|EEV03531.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275193|gb|EEV06680.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278419|gb|EEV09055.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
68-397]
gi|257281770|gb|EEV11907.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus E1410]
gi|257283942|gb|EEV14065.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus M876]
gi|282313502|gb|EFB43897.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C101]
gi|282317152|gb|EFB47526.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C427]
gi|282321554|gb|EFB51879.1| DNA repair protein RecO family protein [Staphylococcus aureus
subsp. aureus M899]
gi|282327149|gb|EFB57444.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331267|gb|EFB60781.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595766|gb|EFC00730.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus C160]
gi|283790479|gb|EFC29296.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920272|gb|EFD97338.1| DNA repair protein RecO family protein [Staphylococcus aureus
subsp. aureus M1015]
gi|291095113|gb|EFE25378.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
58-424]
gi|291466828|gb|EFF09348.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus M809]
gi|295128502|gb|EFG58136.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
EMRSA16]
Length = 250
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NKWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDVAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKYDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|307566036|ref|ZP_07628494.1| DNA repair protein RecO [Prevotella amnii CRIS 21A-A]
gi|307345224|gb|EFN90603.1| DNA repair protein RecO [Prevotella amnii CRIS 21A-A]
Length = 241
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L YG+ ++I++++T + GR V+ ++ + + Q L+ +
Sbjct: 1 MLRKSKAIVLHTIKYGDSSLIIDLLTEEEGRLTFIVKLSKTMKGKMKKQYFQPMTLLDIE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSI-VPLFRFLPEREPCLELYDMLNI 116
+ R N+ + ++ + + + L I L + L+ +
Sbjct: 61 FDFRPNANMQHIKDIRIDIPFTTIPFNPIKTSILLFISEFLLYATRSEQYNKTLFQFVKK 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTK 150
+ F L L K IGF +L+K
Sbjct: 121 SIEWLDASVSNFANFHITFMLHLSKFIGFFPNLSK 155
>gi|21674907|ref|NP_662972.1| recombination/replication protein RecO, putative [Chlorobium
tepidum TLS]
gi|21648134|gb|AAM73314.1| recombination/replication protein RecO, putative [Chlorobium
tepidum TLS]
Length = 253
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 58/151 (38%), Gaps = 4/151 (2%)
Query: 9 ILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRLAQNL 66
+L Y +++ I ++TR+YG+ ++ G+S + + P+ GN++ + +++
Sbjct: 2 VLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRDI 61
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLNCHKI-P 124
L L ++ L R+ E + L+ + + +
Sbjct: 62 QFLSDASLVLSPLSESPDLDRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHAE 121
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
I L L+ +GF L +CV +
Sbjct: 122 RNFQTILAWFLLRLVGVLGFAPSLDRCVFSN 152
>gi|319935429|ref|ZP_08009866.1| hypothetical protein HMPREF9488_00697 [Coprobacillus sp. 29_1]
gi|319809645|gb|EFW06058.1| hypothetical protein HMPREF9488_00697 [Coprobacillus sp. 29_1]
Length = 245
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 3/155 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+ IIL Y E ++IL + T++YG+ R + + Q + ++ +
Sbjct: 11 EGIILKKTVYKENDMILHIYTKEYGKIGIIARGIRKITSKNARACQEMMISEMSINLK-K 69
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ + + + +R+L + P + YD+L L
Sbjct: 70 GLSSLMKATPVDYLRHIKENLDSEIVANYVLEYFYRYLEDNNPNQDEYDILYHSLKALDH 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+++ + +L + G +D+ CVV G ++
Sbjct: 130 GYSPLLVYLLFNVFVLNHNGVSIDVEGCVVCGSSK 164
>gi|291533047|emb|CBL06160.1| DNA repair protein RecO [Megamonas hypermegale ART12/1]
Length = 246
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 15/232 (6%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ + ++LGV+++G + I+ +++ YG+ + + +Q + + +
Sbjct: 3 IYTTEVLVLGVKNWGNADKIVTLLSPTYGKITAAAYGCRRPKSPLAASMQPFSWLDIQL- 61
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
S+ + + E + Y E EP E+Y+ L L
Sbjct: 62 SKGEKMDTVRQCEHKGFFSDLYEDLTAMAYASFIAELAKELCSEDEPQAEIYEKLLKILP 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLP 178
C + + + G L ++C + G + GGA+C S
Sbjct: 122 CLTKFNPRICALA-SAYQIFEYTGCQLHYSQCALCGSKIEGDCHFDAMQGGAICTSCNQG 180
Query: 179 YAEKMLVLPSFLWKEEQTIDAD----------SLKSAFQLTDYFLNKYALQH 220
+ +D D L +A ++ ++ +
Sbjct: 181 KQINYSASVRLFIEHLLYLDWDNPPKFQVKGIDLINAEKILLDYIQSLIGKP 232
>gi|218132941|ref|ZP_03461745.1| hypothetical protein BACPEC_00802 [Bacteroides pectinophilus ATCC
43243]
gi|217991814|gb|EEC57818.1| hypothetical protein BACPEC_00802 [Bacteroides pectinophilus ATCC
43243]
Length = 258
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 60/182 (32%), Gaps = 2/182 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L GE + + ++T++ G+ F + + + + +
Sbjct: 9 GMVLSSMPVGEFDRRIVLLTKERGKIAAFAKGARRMNSPLMGVTQPFAFGKFELYEGRTS 68
Query: 67 GEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KIP 124
+ R + ++ ++ Y + E ++ ++L + L
Sbjct: 69 YDIRRADISNYFTEVSSDLDAICYACYFAELADYYGRENLDASQILNLLYMTLRALANDN 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
I E+ L+ G ++ +C ++ L + S G VC S A + L
Sbjct: 129 IPDELIRYIYEIKLISINGECPNMFECAECRKSEGLHYFSMSRFGIVCDSCVRNTAGECL 188
Query: 185 VL 186
+
Sbjct: 189 EI 190
>gi|57651959|ref|YP_186463.1| RecO family DNA repair protein [Staphylococcus aureus subsp. aureus
COL]
gi|87162406|ref|YP_494221.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221681|ref|YP_001332503.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161509794|ref|YP_001575453.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140014|ref|ZP_03564507.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258450605|ref|ZP_05698667.1| RecO family DNA repair protein [Staphylococcus aureus A5948]
gi|262049141|ref|ZP_06022018.1| hypothetical protein SAD30_0298 [Staphylococcus aureus D30]
gi|262051226|ref|ZP_06023450.1| hypothetical protein SA930_1657 [Staphylococcus aureus 930918-3]
gi|282920115|ref|ZP_06327840.1| DNA repair protein RecO [Staphylococcus aureus A9765]
gi|294848597|ref|ZP_06789343.1| DNA repair protein RecO [Staphylococcus aureus A9754]
gi|62287350|sp|Q5HFJ4|RECO_STAAC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361487|sp|Q2FGF7|RECO_STAA3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|172048906|sp|A6QHA9|RECO_STAAE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|189039773|sp|A8Z4A5|RECO_STAAT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|57286145|gb|AAW38239.1| DNA repair protein RecO family [Staphylococcus aureus subsp. aureus
COL]
gi|87128380|gb|ABD22894.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374481|dbj|BAF67741.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160368603|gb|ABX29574.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257861763|gb|EEV84562.1| RecO family DNA repair protein [Staphylococcus aureus A5948]
gi|259160863|gb|EEW45883.1| hypothetical protein SA930_1657 [Staphylococcus aureus 930918-3]
gi|259162810|gb|EEW47375.1| hypothetical protein SAD30_0298 [Staphylococcus aureus D30]
gi|282594463|gb|EFB99448.1| DNA repair protein RecO [Staphylococcus aureus A9765]
gi|294824623|gb|EFG41046.1| DNA repair protein RecO [Staphylococcus aureus A9754]
gi|329728390|gb|EGG64827.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus 21189]
Length = 250
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|313888960|ref|ZP_07822620.1| DNA repair protein RecO [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845133|gb|EFR32534.1| DNA repair protein RecO [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 234
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQN 65
I+L +GE + I+ V T++YG+ V+ S + + + + + +
Sbjct: 10 GIVLNEMGFGESSKIIRVFTKEYGKISIMVKGAMSPKSRNLSVSQVFGLNEYLLKKGQSF 69
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++LES+ + +Y + + + E + +D+L LN
Sbjct: 70 FYISDSKILESNFKIRENYDNLIYASLLLEIIDKSSISGEANKKAFDLLRKTLNFFNFTK 129
Query: 126 VIGKIFVQIELMLLKNIGFGLDLT 149
+ + EL L IG+ L
Sbjct: 130 DPIGLALAFELKYLSFIGYRPKLD 153
>gi|218131842|ref|ZP_03460646.1| hypothetical protein BACEGG_03464 [Bacteroides eggerthii DSM 20697]
gi|317474543|ref|ZP_07933817.1| DNA repair protein RecO [Bacteroides eggerthii 1_2_48FAA]
gi|217986145|gb|EEC52484.1| hypothetical protein BACEGG_03464 [Bacteroides eggerthii DSM 20697]
gi|316909224|gb|EFV30904.1| DNA repair protein RecO [Bacteroides eggerthii 1_2_48FAA]
Length = 242
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q +LV +
Sbjct: 1 MLQKTQGIVLHSLKYKDTSIIVDIYTEVSGRASFLVPVSRSRKAAVKSVLFQPLSLVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + + L L+R L E L+ L
Sbjct: 61 ADFRPNTTIYKVKEAKSFYPFTSIPYDPYKSAIALFLSEFLYRALREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ S + + L + +G +L
Sbjct: 121 SIVWLDECGSGFANFHLVFLMRLSRFLGLYPNLEDYHSGDCFD 163
>gi|288929801|ref|ZP_06423644.1| DNA repair protein RecO [Prevotella sp. oral taxon 317 str. F0108]
gi|288328902|gb|EFC67490.1| DNA repair protein RecO [Prevotella sp. oral taxon 317 str. F0108]
Length = 243
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+L YG+ +I +++T +GR ++ + + + Q ++ +
Sbjct: 1 MLVKTHAIVLRSIKYGDSQLITDMLTETFGRVSFVSNIPRTQKAKIKKQLFQPLTILEIE 60
Query: 58 WRSRLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + S + L L + + LY +
Sbjct: 61 LDHRPNTRLQRLRDARMAYPFTSIPYSEAKLAITLFLAEFLCHATRSEQQNVPLYRYVET 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKC 151
+ + + L + +GF +L
Sbjct: 121 SVRWLDGAQQLFANFHLAFMIRLSRFLGFYPNLENY 156
>gi|255320777|ref|ZP_05361952.1| DNA repair protein RecO [Acinetobacter radioresistens SK82]
gi|262379447|ref|ZP_06072603.1| DNA repair protein RecO [Acinetobacter radioresistens SH164]
gi|255302154|gb|EET81396.1| DNA repair protein RecO [Acinetobacter radioresistens SK82]
gi|262298904|gb|EEY86817.1| DNA repair protein RecO [Acinetobacter radioresistens SH164]
Length = 236
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 18/209 (8%)
Query: 1 MYWQD-DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
M + ++ R Y EK+ ++ + T +YGR G +R +
Sbjct: 1 MRNEALHGYLIHYRKYREKSHLVYLFTEEYGRIDGILRQV----------PPPQYQSLAL 50
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + ++ + F G L R P E + Y + L
Sbjct: 51 QASGKGELKNFSKLEIVNQPIFFYGDAFFSGFYLNELLLRLCPLEEAMPQTYQQYQLTLV 110
Query: 120 CHKIPSVIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ +V +I Q E +LL+ +G+ +D + + +
Sbjct: 111 KLQQLAVNTQPGLLLRQILRQFEHILLEELGYAIDFSVDAHQQPVEPERHYHFQIQEGFI 170
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADS 201
A + E+ D
Sbjct: 171 PVQKASSATLAGQSLLTMLDYEKGADFSQ 199
>gi|256827189|ref|YP_003151148.1| DNA repair protein RecO [Cryptobacterium curtum DSM 15641]
gi|256583332|gb|ACU94466.1| DNA repair protein RecO [Cryptobacterium curtum DSM 15641]
Length = 256
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 9/195 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ AI+L E + I++ + R R + + +
Sbjct: 7 HERAIVLHRNRLRESDAIVDALIEDGSRISFVARGALKPSNPFAARLDLFGVCDVMLAPS 66
Query: 64 QNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ L L +H + L R E P L+ M L+
Sbjct: 67 RGLAIVSEARLAAAHAPLRSDIIRNAAAAPILDALRRCAHEDLPVPRLFPMTESILDHLS 126
Query: 123 IPSVI--GKIFVQIELMLLKNIGFGLDLTKCVVTG------VTQDLLWVSPKSGGAVCRS 174
I + L L +GF L C+ G D + S GGA+C
Sbjct: 127 TCEEIVLCPLTAAYLLKLFALLGFRPSLDTCIDCGQSLLEDNPTDEVRFSYIDGGALCYD 186
Query: 175 VGLPYAEKMLVLPSF 189
+ L L +
Sbjct: 187 CAASHVHVALSLHTL 201
>gi|225012385|ref|ZP_03702821.1| DNA repair protein RecO [Flavobacteria bacterium MS024-2A]
gi|225003362|gb|EEG41336.1| DNA repair protein RecO [Flavobacteria bacterium MS024-2A]
Length = 241
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 7/157 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM-----QPILQAGNLVR 55
M +A+ L YG+ ++I T++YG ++ S R + + + L+
Sbjct: 1 MQSSTEALTLTTVKYGDSSLIAACYTKEYGLQSYMLKGILSSRTNKKTPKSLFEPLTLLE 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREP--CLELYDM 113
+ LG + L + L + + + + + E +LY
Sbjct: 61 LEATKNSTDRLGFIKEAKLHYPYQTIPFDLRKKTLLFFLAEVIQQVIKEEQEANNQLYAF 120
Query: 114 LNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L + +G +++ L L K IGF +++
Sbjct: 121 LKKRMLWLDTEENVGLFHIKLMLDLSKFIGFYPNISD 157
>gi|167764150|ref|ZP_02436277.1| hypothetical protein BACSTE_02534 [Bacteroides stercoris ATCC
43183]
gi|167698266|gb|EDS14845.1| hypothetical protein BACSTE_02534 [Bacteroides stercoris ATCC
43183]
Length = 242
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q +LV +
Sbjct: 1 MLQKTQGIVLHSLKYKDTSIIVDIYTEVSGRASFLVPVSRSRKAAVKSVLFQPLSLVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R ++ + + + + L L+R L E L+ L
Sbjct: 61 ADFRPNTSIYKVKEAKSFYPFTSIPYDPYKSAIALFLSEFLYRALREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ S + + L + +G +L
Sbjct: 121 SIVWLDECGSGFANFHLVFLMRLSRFLGLYPNLEDYHGGDYFD 163
>gi|15924556|ref|NP_372090.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus Mu50]
gi|15927146|ref|NP_374679.1| hypothetical protein SA1395 [Staphylococcus aureus subsp. aureus
N315]
gi|156979884|ref|YP_001442143.1| hypothetical protein SAHV_1553 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257793642|ref|ZP_05642621.1| DNA repair protein RecO [Staphylococcus aureus A9781]
gi|258411058|ref|ZP_05681338.1| DNA repair protein RecO [Staphylococcus aureus A9763]
gi|258420138|ref|ZP_05683093.1| DNA repair protein RecO [Staphylococcus aureus A9719]
gi|258423994|ref|ZP_05686876.1| DNA repair protein RecO [Staphylococcus aureus A9635]
gi|258437398|ref|ZP_05689382.1| DNA repair protein recO [Staphylococcus aureus A9299]
gi|258443604|ref|ZP_05691943.1| DNA repair protein recO [Staphylococcus aureus A8115]
gi|258446811|ref|ZP_05694965.1| DNA repair protein recO [Staphylococcus aureus A6300]
gi|258448725|ref|ZP_05696837.1| DNA repair protein recO [Staphylococcus aureus A6224]
gi|258453542|ref|ZP_05701520.1| DNA repair protein recO [Staphylococcus aureus A5937]
gi|282893067|ref|ZP_06301301.1| DNA repair protein RecO [Staphylococcus aureus A8117]
gi|282928199|ref|ZP_06335804.1| DNA repair protein RecO [Staphylococcus aureus A10102]
gi|295406689|ref|ZP_06816494.1| DNA repair protein RecO [Staphylococcus aureus A8819]
gi|297245729|ref|ZP_06929594.1| DNA repair protein RecO [Staphylococcus aureus A8796]
gi|54039036|sp|P65986|RECO_STAAN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|54041796|sp|P65985|RECO_STAAM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|166221911|sp|A7X2W3|RECO_STAA1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|13701364|dbj|BAB42658.1| SA1395 [Staphylococcus aureus subsp. aureus N315]
gi|14247337|dbj|BAB57728.1| similar to DNA repair protein RecO [Staphylococcus aureus subsp.
aureus Mu50]
gi|156722019|dbj|BAF78436.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|257787614|gb|EEV25954.1| DNA repair protein RecO [Staphylococcus aureus A9781]
gi|257840208|gb|EEV64672.1| DNA repair protein RecO [Staphylococcus aureus A9763]
gi|257843849|gb|EEV68243.1| DNA repair protein RecO [Staphylococcus aureus A9719]
gi|257845615|gb|EEV69647.1| DNA repair protein RecO [Staphylococcus aureus A9635]
gi|257848603|gb|EEV72591.1| DNA repair protein recO [Staphylococcus aureus A9299]
gi|257851010|gb|EEV74953.1| DNA repair protein recO [Staphylococcus aureus A8115]
gi|257854386|gb|EEV77335.1| DNA repair protein recO [Staphylococcus aureus A6300]
gi|257858003|gb|EEV80892.1| DNA repair protein recO [Staphylococcus aureus A6224]
gi|257864273|gb|EEV87023.1| DNA repair protein recO [Staphylococcus aureus A5937]
gi|282590006|gb|EFB95088.1| DNA repair protein RecO [Staphylococcus aureus A10102]
gi|282764385|gb|EFC04511.1| DNA repair protein RecO [Staphylococcus aureus A8117]
gi|285817248|gb|ADC37735.1| DNA recombination and repair protein RecO [Staphylococcus aureus
04-02981]
gi|294968436|gb|EFG44460.1| DNA repair protein RecO [Staphylococcus aureus A8819]
gi|297177380|gb|EFH36632.1| DNA repair protein RecO [Staphylococcus aureus A8796]
gi|329727140|gb|EGG63596.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus 21172]
gi|329733186|gb|EGG69523.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus 21193]
Length = 250
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|82751169|ref|YP_416910.1| recombination protein [Staphylococcus aureus RF122]
gi|119361488|sp|Q2YT13|RECO_STAAB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|82656700|emb|CAI81127.1| probable recombination protein [Staphylococcus aureus RF122]
Length = 250
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|197122960|ref|YP_002134911.1| DNA repair protein RecO [Anaeromyxobacter sp. K]
gi|238689872|sp|B4UG90|RECO_ANASK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|196172809|gb|ACG73782.1| DNA repair protein RecO [Anaeromyxobacter sp. K]
Length = 254
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 3/157 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF--VRNGQSHRMQPILQAGNLVRVNWR 59
+ ++L YGE + ++ ++T + G+ F R L+ L+ R
Sbjct: 3 RVKLTGVVLRAVDYGESDRVVTLLTAERGKVSAFARGARASRRRFGGALEPFTLLSAEVR 62
Query: 60 SRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + LG V+ A + + + +P EL+++L +L
Sbjct: 63 ERSGSDLLGLDSVSVVRGFGALRGDLGRIACAGYAAELARELVRDHQPHDELFELLVAYL 122
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL L+ G L C G
Sbjct: 123 DALDAGPPRPAALRAFELGALRAAGLMPRLDACARCG 159
>gi|220917752|ref|YP_002493056.1| DNA repair protein RecO [Anaeromyxobacter dehalogenans 2CP-1]
gi|254790505|sp|B8JDE1|RECO_ANAD2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|219955606|gb|ACL65990.1| DNA repair protein RecO [Anaeromyxobacter dehalogenans 2CP-1]
Length = 254
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 3/153 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGF--VRNGQSHRMQPILQAGNLVRVNWRSRL- 62
++L YGE + ++ ++T + G+ F R L+ L+ R R
Sbjct: 7 TGVVLRAVDYGESDRVVTLLTAERGKVSAFARGARASRRRFGGALEPFTLLSAEVRERSG 66
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ LG V+ A + + + +P EL+++L +L+
Sbjct: 67 SDLLGLDSVSVVRGFGALRGDLGRIACAGYAAELARELVRDHQPHDELFELLVAYLDALD 126
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
EL L+ G L C G
Sbjct: 127 AGPPRPAALRAFELGALRAAGLMPRLDACARCG 159
>gi|71279899|ref|YP_270775.1| recombination protein O [Colwellia psychrerythraea 34H]
gi|71145639|gb|AAZ26112.1| recombination protein O [Colwellia psychrerythraea 34H]
Length = 236
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 18/243 (7%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M Q +A +L R Y E +++++T Q G+ V GQS R + ++Q +++
Sbjct: 1 MIEQ-NAFVLHSRPYRENQQLVDLLTEQDGKVTALVYVGQSKRSIKKGLIQPFLPLKLTL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + +S+ L L R L E+ C L+ L
Sbjct: 60 KGQGNVKYITQIDSISKSYS---LVKYSLFSSFYINELLIRLLTEQIACQHLFSQYQTTL 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I EL LL+ +G D + V + + G
Sbjct: 117 TALAQGEEIAPQLRLFELALLEELGLSFDFSPVFEHDV--NYFHYIAEQGFVPVYDPFPK 174
Query: 179 YAEKMLVLPSFLWKEE-----QTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
+ + + Q ++ + F+L L + + + + R+ F
Sbjct: 175 NSTQCFDKTHLQAIAQRGSLYQNGMSEDVSYTFKL----LMRQVINQLLGNKPLNSRKLF 230
Query: 233 LGK 235
K
Sbjct: 231 ANK 233
>gi|327382538|gb|AEA54014.1| DNA repair protein recO [Lactobacillus casei LC2W]
gi|327385735|gb|AEA57209.1| DNA repair protein recO [Lactobacillus casei BD-II]
Length = 259
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/187 (13%), Positives = 65/187 (34%), Gaps = 2/187 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ +++ ++Y E +++++++T ++G+ + + + ++ R +
Sbjct: 9 EGLVMSRQNYRESDMLVKILTDRFGKKMFLLNRARKPGFTLGAGILPFTHADYIGEVRES 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + +L Y + P+ P ++ + L
Sbjct: 69 GLSYLSAIKNATQYRQISDDITLNAYAAYIFGLIDLAFPDGRPVGFWFNQIKQALYLIDS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I IE+ +LK G + CV+ G L S GG +C++ ++
Sbjct: 129 GLDPQIIANVIEVQMLKEYGVEPNWRGCVIDGRADLPLDFSESYGGLLCQNHWDKDPHRL 188
Query: 184 LVLPSFL 190
P +
Sbjct: 189 HASPRVI 195
>gi|312869095|ref|ZP_07729269.1| DNA repair protein RecO [Lactobacillus oris PB013-T2-3]
gi|311095341|gb|EFQ53611.1| DNA repair protein RecO [Lactobacillus oris PB013-T2-3]
Length = 261
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ R Y E++++++++T + G + +VR+ + + ++ L +
Sbjct: 9 RGIIIYRRDYRERDLLIKILTDRIGPAMFYVRDAKKRGFRLASDILPFTHGSYIGSLDDH 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ S Y + + + +P +D + L
Sbjct: 69 GLSFINTASETHQYQHIAGDLSRNAYATYILALVDHAFTDGQPLGGWFDQVAAALALIDR 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ IE LL G +CV+ G L S + GG +C
Sbjct: 129 GQDEQVVTNVIETQLLTVFGVAPTWDRCVICGRADRPLDFSEQYGGMLCNRH 180
>gi|21283247|ref|NP_646335.1| hypothetical protein MW1518 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486401|ref|YP_043622.1| putative recombination protein O [Staphylococcus aureus subsp.
aureus MSSA476]
gi|38258613|sp|Q8NWB5|RECO_STAAW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56749514|sp|Q6G901|RECO_STAAS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|21204687|dbj|BAB95383.1| MW1518 [Staphylococcus aureus subsp. aureus MW2]
gi|49244844|emb|CAG43305.1| putative recombination protein O [Staphylococcus aureus subsp.
aureus MSSA476]
Length = 250
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLFVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|118444042|ref|YP_878551.1| DNA repair protein RecO [Clostridium novyi NT]
gi|171472989|sp|A0Q1P9|RECO_CLONN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118134498|gb|ABK61542.1| DNA repair protein RecO [Clostridium novyi NT]
Length = 256
Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 7/202 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-S 60
++ A+IL + Y E + ++ + T + G+ + + + + I +
Sbjct: 8 IFKTKALILKTQDYKENDKLVWLFTEKIGKVCAIAKGAKKSKSKFIASTQTFCFGEYVLY 67
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R E+++S + L YG + L + + EL+
Sbjct: 68 RGKSLYSINEVEIIDSFQSLLSDMDTITYGSYFCELILIALEQEQSDRELFKDFIKSFYF 127
Query: 121 HKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSV--- 175
K ++ + EL LLK G+G D KC + G + S + G VC +
Sbjct: 128 LKNQAMDLEILARTFELKLLKATGYGFDFEKCCICGKRINKTNYLSIQYYGGVCDNCEKT 187
Query: 176 -GLPYAEKMLVLPSFLWKEEQT 196
G + + FL+K
Sbjct: 188 GGFKISYAAYGVLKFLYKTSIE 209
>gi|332881733|ref|ZP_08449381.1| DNA repair protein RecO [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680372|gb|EGJ53321.1| DNA repair protein RecO [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 241
Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 5/154 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + ++L Y + ++I+++ T G V+ +S + + +++ ++
Sbjct: 1 MQEKTQGVVLRTLKYNDNSLIVDIYTATRGTVSFMVKLPKSRKATLKGVFFRPLSILEID 60
Query: 58 WRSRLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L ++ + L L R L L+ +
Sbjct: 61 FDYRQKSALQRIRDVRFDYTYQSLPYDPYKSSIALFLAEFLCRVLKHEAGGGPLFSYILY 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLT 149
L F L + +GF ++
Sbjct: 121 SLQWLDASERAFSNFHLVFITRLTRFLGFYPNVE 154
>gi|213963746|ref|ZP_03391996.1| DNA repair protein RecO [Capnocytophaga sputigena Capno]
gi|213953626|gb|EEB64958.1| DNA repair protein RecO [Capnocytophaga sputigena Capno]
Length = 238
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
MY + +AI++ Y + ++I++ T+ G + S + + Q L+ +
Sbjct: 1 MYEKVEAIVISNLKYSDNSLIVKCFTKTLGTRSYLQQGILSAKKNSQTIALFQPFTLLEL 60
Query: 57 NWRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ +LG + + + + L P +EL++ L
Sbjct: 61 VATHKSNGSLGRIKEAKVTTPYLSLHTDIYKSTVSLFLSEICANICTSEAPDIELFNYLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLD 147
L ++ L L K +GF D
Sbjct: 121 EKLIYLDRNEFSANFHLKFLLDLSKYLGFYPD 152
>gi|167747960|ref|ZP_02420087.1| hypothetical protein ANACAC_02692 [Anaerostipes caccae DSM 14662]
gi|167652610|gb|EDR96739.1| hypothetical protein ANACAC_02692 [Anaerostipes caccae DSM 14662]
Length = 246
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 2/179 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ ++L + GE + + ++T++ GR F R + L +
Sbjct: 4 EIKVTGLVLNAGNIGEFDKRVTLLTKERGRITAFARGAKKATSPYAAACQPLTFGEFSLY 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM--LNIFLN 119
++ + + + + L + +L +
Sbjct: 64 EGRSSFNLMWADVGHYFEGVKEDLLLVSYGSYFCEFASYLTRENNDEKEILKLLYLSLRA 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K I E+ L+ G G+++ C G T+DL +GG +C +
Sbjct: 124 LEKKTIDPKLIRRVFEIKLMALYGQGMEVFCCTQCGSTEDLSCFDSSAGGILCSNCRKS 182
>gi|283770642|ref|ZP_06343534.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus H19]
gi|283460789|gb|EFC07879.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus H19]
Length = 250
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 3/181 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAIDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 P 178
Sbjct: 181 K 181
>gi|302333242|gb|ADL23435.1| putative recombinational DNA repair protein (RecF pathway)
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 250
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDIH 184
>gi|238924232|ref|YP_002937748.1| DNA repair and genetic recombination protein [Eubacterium rectale
ATCC 33656]
gi|238875907|gb|ACR75614.1| DNA repair and genetic recombination protein [Eubacterium rectale
ATCC 33656]
gi|291529104|emb|CBK94690.1| DNA replication and repair protein RecO [Eubacterium rectale
M104/1]
Length = 242
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 2/179 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L G+ + + ++T++ G+ F R + Q + + + ++
Sbjct: 8 TGMVLSAMPVGDFDKRITILTKERGKITAFARGARRPNSQLMAGSNPFSFGEFELFEGKS 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ +L +Y G + F E ++ +L L + P
Sbjct: 68 AYSLSKVTISNYFRELTQDLEAVYTGFYFLEFCGYFCQENNDEKDMLKLLYQSLRALESP 127
Query: 125 -SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ EL + G G L C+ + L S + GG C + G +
Sbjct: 128 AYKNELVRAVFELKAITINGEGPSLFSCIHCHSREGLNVFSARRGGVFCDNCGTQVQGR 186
>gi|282911204|ref|ZP_06319006.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282324899|gb|EFB55209.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
WBG10049]
Length = 250
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEYGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NKWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDVAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKYDGAISRQEAS 180
Query: 178 PYAE 181
Sbjct: 181 KDVH 184
>gi|282916836|ref|ZP_06324594.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus D139]
gi|282319323|gb|EFB49675.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus D139]
Length = 250
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 3/181 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + Q V +
Sbjct: 1 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H + + Y + + R + E + Y +L L
Sbjct: 61 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 121 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS 180
Query: 178 P 178
Sbjct: 181 K 181
>gi|227495960|ref|ZP_03926271.1| Recombinational DNA repair protein (RecF pathway) [Actinomyces
urogenitalis DSM 15434]
gi|226834514|gb|EEH66897.1| Recombinational DNA repair protein (RecF pathway) [Actinomyces
urogenitalis DSM 15434]
Length = 161
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 9/156 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AI+L GE + I+ ++TR +G+ + + R L+ ++V V +
Sbjct: 6 YRDEAIVLRTYRLGEADRIIVMLTRAHGQVRAVAKGVRKTGSRFGARLEPFSMVDVQLHA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-----EPCLELYDMLN 115
+ ++ + ++F + R + + + +L
Sbjct: 66 GRSLDVVTQVETIEPFSAPVCSDYAVFTCASTMVETAERLTEDDGDLGTTDSPQQFLLLY 125
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
L + ++ LL+ + C
Sbjct: 126 GALAAMARRRHAPGLV--LDSYLLRALALAGWAPSC 159
>gi|298387921|ref|ZP_06997470.1| DNA repair protein RecO [Bacteroides sp. 1_1_14]
gi|298259328|gb|EFI02203.1| DNA repair protein RecO [Bacteroides sp. 1_1_14]
Length = 242
Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 5/191 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRTSFLVPVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRVKEAKSFYPFTSIPYDPYKSSMALFLAEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L + +G +L L + + S
Sbjct: 121 SVIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTSTRPQLHSSY 180
Query: 176 GLPYAEKMLVL 186
P L
Sbjct: 181 INPEEAGRLRQ 191
>gi|121595568|ref|YP_987464.1| DNA repair protein RecO [Acidovorax sp. JS42]
gi|166221880|sp|A1WAW3|RECO_ACISJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|120607648|gb|ABM43388.1| DNA repair protein RecO [Acidovorax sp. JS42]
Length = 262
Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 3/138 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A +L + E ++ILE TR YGR + + +P+L +RV +
Sbjct: 8 DEPAYVLHSYDWSESSLILETFTRHYGRVALVAKGAKKPTSNFRPVLLPLQPLRVTYTLG 67
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + + L GL L R L + L+D +
Sbjct: 68 GEGHGEIHALKGAEWAGGHVMPTGDALLSGLYLNELLLRLLAREDTHAPLFDTYAGVVRV 127
Query: 121 HKIPSVIGKIFVQIELML 138
G+ +E +L
Sbjct: 128 LATVDHEGEHGDALEPVL 145
>gi|261416565|ref|YP_003250248.1| DNA repair protein RecO [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373021|gb|ACX75766.1| DNA repair protein RecO [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327326|gb|ADL26527.1| putative DNA repair protein RecO [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 263
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 24/197 (12%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+ AI+L Y + + I++ +T + G V+ G+ + L L V +R
Sbjct: 2 IKTRAIVLHRFPYSDSSFIVKALTEESGIVSFIVKGGKKKESPFRGALDPLALSEVVFRQ 61
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+L + L L + L + R+ P+ P E ++ L ++
Sbjct: 62 NPNTDLQFIKEATLLDWRKNLRNDLLSTAKAQVMTEMILRYAPQGVPLQEEFERLEQAIS 121
Query: 120 CHKIPSVI----------------GKIFVQIELMLLKNI---GFGLDLTKCVVTGVT--Q 158
S LL G+ LDLT C G T +
Sbjct: 122 EFDSDSPQDSPTPEGSAHSSTSSVPDKSRIFAQWLLDTCDMWGYNLDLTTCSRCGHTLEE 181
Query: 159 DLLWVSPKSGGAVCRSV 175
P++GG VC++
Sbjct: 182 PAADFFPETGGFVCQAC 198
>gi|166032678|ref|ZP_02235507.1| hypothetical protein DORFOR_02393 [Dorea formicigenerans ATCC
27755]
gi|166027035|gb|EDR45792.1| hypothetical protein DORFOR_02393 [Dorea formicigenerans ATCC
27755]
Length = 246
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 2/179 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++L G+ + + ++T++ G+ F R + + +
Sbjct: 3 QITVTGMVLSATPVGDYDRRVVLLTKERGKIAAFARGARRTNSSLLGVTSPFSFGEFVVY 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++ ++L + YG + + E EL +L L
Sbjct: 63 EGRTSYTLMSASISNYFSELRTDVEGAYYGFYFLDFAGYYAREANDETELLKLLYQTLRA 122
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I EL + G G + +CV G ++ + S + GG VCR +
Sbjct: 123 LTNVHIPNRLIRCIYELKAVCINGEGPQVFECVSCGRWEENMKFSVRKGGLVCRKCEIH 181
>gi|310659077|ref|YP_003936798.1| DNA double strand break repair/recombination protein [Clostridium
sticklandii DSM 519]
gi|308825855|emb|CBH21893.1| DNA double strand break repair and homologous recombination factor
[Clostridium sticklandii]
Length = 248
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + I++ YGE + IL +++++ G+ F + + + + + N+
Sbjct: 1 MQIETEGIVVKTVKYGEADTILTIVSQKLGKITVFTKASKRVKSPLMSASQIFAYSNFVL 60
Query: 61 -RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + R E+++++ F Y + + + E + ++L+++L L+
Sbjct: 61 THQSGSYRLQRVELIKNYYKISTDLDKFFYASYFMELSEKLMIEHQTNIKLFNLLKDTLD 120
Query: 120 CHKIPSVI--GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + EL +L+ GF ++ KC G+ Q
Sbjct: 121 ILLELDTQKLELMRIVYELKILECSGFKPEVLKCANCGIIQ 161
>gi|326386768|ref|ZP_08208389.1| recombinational DNA repair protein (RecF pathway)-like protein
[Novosphingobium nitrogenifigens DSM 19370]
gi|326208821|gb|EGD59617.1| recombinational DNA repair protein (RecF pathway)-like protein
[Novosphingobium nitrogenifigens DSM 19370]
Length = 202
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + +AI+ +R +GE I+ +T +G +V + ++P+L GN + V R+
Sbjct: 1 MLIRVEAILCAMRPHGEHGGIIRALTGDHGMVAAYVSGARGRTLRPVLIPGNTLAVEIRA 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R L R E++ S L + LPE P L+ L L+
Sbjct: 61 RGGSQLPGARTELVASRAPWLGEPLPAAAIDWATALTAATLPEGHPYPALHTALGALLDA 120
Query: 121 HKIPSV---IGKIFVQIELMLLKNIGFG 145
++ E +LL+ +G+G
Sbjct: 121 ICHAPSARGWARVLAGYEALLLREVGYG 148
>gi|289550663|ref|YP_003471567.1| DNA recombination and repair protein RecO [Staphylococcus
lugdunensis HKU09-01]
gi|315658158|ref|ZP_07911030.1| recombination protein O [Staphylococcus lugdunensis M23590]
gi|289180195|gb|ADC87440.1| DNA recombination and repair protein RecO [Staphylococcus
lugdunensis HKU09-01]
gi|315496487|gb|EFU84810.1| recombination protein O [Staphylococcus lugdunensis M23590]
Length = 251
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 10/209 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + ++ ++ + VR + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKVITILNEHGAKVPLMVRRAKKAKSGFQAHTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y S + + + ++E Y++L+ L
Sbjct: 61 NQWRGMGTLNSIDVINQHYELRLDLYTHSYASLSAEIIDKAMDDQEISKYYYELLHFVLT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCRSVGL 177
+ + + L + GF + CV+TG T +L+ S K GA+ +
Sbjct: 121 KITAGTSAQLMSIITMLKCMHKYGFSANFNHCVITGSTNPSNLIGYSFKFHGAISQEAA- 179
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAF 206
P L +T+ ++
Sbjct: 180 ------YRDPHALLISNKTLYLLNILQQL 202
>gi|29348840|ref|NP_812343.1| DNA repair protein [Bacteroides thetaiotaomicron VPI-5482]
gi|81586736|sp|Q8A275|RECO_BACTN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|29340746|gb|AAO78537.1| DNA repair protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 242
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 5/191 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRTSFLVPVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADFRPNATLYRVKEAKSFYPFTSIPYDPYKSSMALFLAEFLYRAVREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L + +G +L L + + S
Sbjct: 121 SVIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTSTRPQLHSSY 180
Query: 176 GLPYAEKMLVL 186
P L
Sbjct: 181 INPEEAGRLRQ 191
>gi|224542129|ref|ZP_03682668.1| hypothetical protein CATMIT_01304 [Catenibacterium mitsuokai DSM
15897]
gi|224524966|gb|EEF94071.1| hypothetical protein CATMIT_01304 [Catenibacterium mitsuokai DSM
15897]
Length = 245
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 14/225 (6%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ + ++L + E + IL + T YGR + + + + + +L R
Sbjct: 8 KTEGVVLKITPSKESDAILSIYTHDYGRISVYGKGIRKINSKNARGVTPSSLSLFELNIR 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
R +E + + + +R++PE +P L+ Y L L
Sbjct: 68 -KGLSTLVRATGIEYYIHIQDHIETDILAQCLLEYYYRYVPENKPDLDTYAFLVDALKAI 126
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I+ I + ++K+ G L++ CV G T + S GG VCR P
Sbjct: 127 DTGYSYKLIYALILVFIMKDNGIELEVDGCVHCGHTS-VTSFSLVDGGFVCRKHQTPQDV 185
Query: 182 KM----------LVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
+M + + +ID LK + +Y++++Y
Sbjct: 186 QMSIEALKAIRHIYKTPMAHIDTLSIDESVLKEILFIFEYYIDEY 230
>gi|291542201|emb|CBL15311.1| DNA repair protein RecO [Ruminococcus bromii L2-63]
Length = 248
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 2/173 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M ++ + +I+ ++ GE++ ++ +T+ G FV+ ++ + A L
Sbjct: 1 MKFRTEGLIIKEQNIGEQDKLVFALTKSNGVIRAFVKGAKNIKNGKCAAASLLSYSRLTI 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ + + + P + ++ L
Sbjct: 61 YKGRESYIIGEAQPIRIFSKLRSDVTKMCLAQYFCELALTICPREQKADSFLSLVLNSLY 120
Query: 120 CHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
I +E+ L G+ DL C G L GA+
Sbjct: 121 LLSENKRSADLIKPCLEMRLASMAGYMPDLRMCRECGEYITPLMYFLPRIGAL 173
>gi|86157729|ref|YP_464514.1| DNA replication and repair protein RecO [Anaeromyxobacter
dehalogenans 2CP-C]
gi|119361446|sp|Q2IQJ8|RECO_ANADE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|85774240|gb|ABC81077.1| DNA replication and repair protein RecO [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 254
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 3/157 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF--VRNGQSHRMQPILQAGNLVRVNWR 59
+ ++L YGE + ++ ++T + G+ F R L+ L+ R
Sbjct: 3 RVKLTGVVLRAVDYGESDRVVTLLTAERGKVSAFARGARASRRRFGGALEPFTLLSAEVR 62
Query: 60 SRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + LG V+ A + + + +P EL+D+L +L
Sbjct: 63 ERSGSDLLGLDSVSVVRGFGALRGDLGRIACAGYAAELARELVRDHQPHDELFDLLVAYL 122
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
EL L+ G L C G
Sbjct: 123 GALDAAPPRPAALRAFELGALRAAGLMPRLDACARCG 159
>gi|325105246|ref|YP_004274900.1| DNA repair protein RecO [Pedobacter saltans DSM 12145]
gi|324974094|gb|ADY53078.1| DNA repair protein RecO [Pedobacter saltans DSM 12145]
Length = 241
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 13/219 (5%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L V Y E ++++++ T ++G + + + + +LQA +L+ +
Sbjct: 1 MLHKTRGIVLKVTDYSESSVVVKIFTEKFGVQSYLINGVKKPKAKVKMNMLQALHLLDMV 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + + + + +++ + E+ L++ ++
Sbjct: 61 VYHKPMATMHKVSDVRSSPILSSIPYDISKSAIAMFLNEVIYKSIKEQVDDALLFEFIST 120
Query: 117 FLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + + L + +GF DL+ + K G V
Sbjct: 121 SIELLDQEDGSVANFHLVFLMKLTRFLGFHPDLS------FADTSSYFDLKEGAFVSSEP 174
Query: 176 GLPYAEKMLVLPSFLWKEEQTI-DADSLKSAFQLTDYFL 213
+ K L F+ I D ++K LT +L
Sbjct: 175 PHAFFIKEFFLEKFIEIIRTPIQDYKNVKLD-NLTRKYL 212
>gi|152995277|ref|YP_001340112.1| DNA repair protein RecO [Marinomonas sp. MWYL1]
gi|150836201|gb|ABR70177.1| DNA repair protein RecO [Marinomonas sp. MWYL1]
Length = 245
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 18/219 (8%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M A ++ R + + I+L+++T + G G R + + I + +
Sbjct: 1 MRVS--AYVIHTRPFQDSKILLDMLTLEQGLIRGVWRLPK-KEARVIPGPFLCYEMEFTG 57
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + A L L L + LP P +++++ +
Sbjct: 58 RSDLKT---VKSLESIKSASSLDGLPLYAALYVHELLEKLLPINLPLPDVFELYKWLIEN 114
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ I + + E+ L +G G+++ V + + G
Sbjct: 115 LHAGAPIAPLLRRFEVGLFSELGVGINMVSTGRGEVLEARQLYQFHYKFGLRPYYG---- 170
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQ 219
E +P + + +D + +++K L
Sbjct: 171 EIPKQMPMLYVEGQVALDYHA--------GKWMDKQVLS 201
>gi|317508571|ref|ZP_07966232.1| recombination protein O [Segniliparus rugosus ATCC BAA-974]
gi|316253115|gb|EFV12524.1| recombination protein O [Segniliparus rugosus ATCC BAA-974]
Length = 247
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 6/184 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++TR++G + + + L+ + V V
Sbjct: 4 YRDVGVVLRNHQLGEADRIVALLTREHGLVRAVAKGVRRTRSKFGARLEPFSCVDVQLYQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + L+++ ++ + +I+ L +
Sbjct: 64 GRSLDV-ITQAATLDANSEEITADYGKYTTGCAILETATLLAGPQGAPAGQLHTLTRGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + L+ + G+ L C G P++GG VC
Sbjct: 123 AALRKGEKPRDLILAAFFLRAMGHAGWMPALADCARCGKEGPHRAFHPRAGGVVCPLCRP 182
Query: 178 PYAE 181
P +
Sbjct: 183 PGSS 186
>gi|6647943|sp|Q9ZD01|Y549_RICPR RecName: Full=Uncharacterized protein RP549
gi|3861098|emb|CAA14998.1| unknown [Rickettsia prowazekii]
Length = 135
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 102 PEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL 161
+ + L + L +L+ + ++ EL LL G+ LDLTKC V+ VT DL
Sbjct: 1 MKEKNILFFFSFLINYLDNLSKNFCF-RDYISFELNLLAETGYKLDLTKCCVSHVTTDLT 59
Query: 162 WVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN 221
+VSPKS A+ VG PY +K+L+LP FL ++ I + K A LT+YF N+Y +N
Sbjct: 60 YVSPKSARALSYKVGKPYRDKLLILPKFLLAKDSEITLEEKKQALTLTNYFFNRYLFHNN 119
Query: 222 IIHCHLLRENFLGKLLEL 239
RE F+ + +
Sbjct: 120 --RQVKAREEFIEYITNI 135
>gi|320534193|ref|ZP_08034719.1| DNA repair protein RecO [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133588|gb|EFW26010.1| DNA repair protein RecO [Actinomyces sp. oral taxon 171 str. F0337]
Length = 171
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 12/163 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++D+AIIL GE + I+ ++TR +G+ + + R L+ ++ V +
Sbjct: 6 YRDEAIILRTYKLGEADRIIVMLTRHHGQVRAVAKGVRRTTSRFGARLEPFSMTDVQLHA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-----EPCLELYDMLN 115
+ ++ + A ++F + R + E + + +L
Sbjct: 66 GRSLDVVTQAEIIDPFGRAVSADYAMFTCASTMVETAERLSADDGDLGTEASPQQFLLLA 125
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG 155
L + ++ LL+ + G+ C + G
Sbjct: 126 GALAAMSHRRHAPGL--ILDSYLLRALALGGWAPSCYDCALCG 166
>gi|312890249|ref|ZP_07749790.1| DNA repair protein RecO [Mucilaginibacter paludis DSM 18603]
gi|311297361|gb|EFQ74489.1| DNA repair protein RecO [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 72/208 (34%), Gaps = 7/208 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+ +YGE ++I++V T ++G V + R + +LQ L+ +
Sbjct: 1 MLHKTRGIVFKTTNYGESSVIVQVYTEKFGLQSYIVNGVKKPRAKISRNMLQPLYLLDMV 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYG-LQSIVPLFRFLPEREPCLELYDMLNI 116
+ N+ + + L L++ + ++ L++ +
Sbjct: 61 VYHKATGNVQRIAELKNSPVLQSIPYDMIKTSIVLFLNEVLYKAVKHQDTDENLFNFIFH 120
Query: 117 FLNCHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ--DLLWVSPKSGGAVCR 173
+ + + L L + +GF ++ + + D ++ K A+
Sbjct: 121 GIEWLEHQQEGLANFHLLFLLKLTRYMGFYPEVNQDINADFFDMKDGVFKRYKPDHALYL 180
Query: 174 SVGLPYAEKMLVLPSFLWKEEQTIDADS 201
S L+ SF ++ + D
Sbjct: 181 SPPHTQNFNKLLQYSFENMQQLKLSNDE 208
>gi|253568815|ref|ZP_04846225.1| DNA repair protein [Bacteroides sp. 1_1_6]
gi|251840834|gb|EES68915.1| DNA repair protein [Bacteroides sp. 1_1_6]
Length = 242
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 5/191 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRTSFLVPVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADFRPNATLYRVKEAKSFYPFTSIPYDPYKSSMALFLAEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L + +G +L L + + S
Sbjct: 121 SVIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTSTRPQLHSSY 180
Query: 176 GLPYAEKMLVL 186
P L
Sbjct: 181 INPEEAGRLRQ 191
>gi|223985699|ref|ZP_03635746.1| hypothetical protein HOLDEFILI_03052 [Holdemania filiformis DSM
12042]
gi|223962310|gb|EEF66775.1| hypothetical protein HOLDEFILI_03052 [Holdemania filiformis DSM
12042]
Length = 250
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 7/160 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+A+IL + Y E + ++ V+++ YG+ R + + L + + +
Sbjct: 7 EAVILKQQDYRENDALITVLSKDYGKLGFVCRGIRKMASKNAVSCMPFVLSELMFDYKEQ 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-----ELYDMLNIFL 118
L + + + + + Q + + L E+ E+Y++L++ L
Sbjct: 67 ATLFSLKSARVLAAHRHIREDLEKMTIAQVMCEIADKLLEQGESDLEAAGEVYELLSVSL 126
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + I Q + LK G + +CV+ TQ
Sbjct: 127 DRLDSETDSYLILAQFTALALKTEGIEPVVDECVLCSNTQ 166
>gi|259503182|ref|ZP_05746084.1| recombination protein O [Lactobacillus antri DSM 16041]
gi|259168839|gb|EEW53334.1| recombination protein O [Lactobacillus antri DSM 16041]
Length = 268
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLA 63
II+ R Y E++++++++T + G + +VR+ + R+ L
Sbjct: 16 RGIIIYRRDYRERDLLIKILTDRIGPAMFYVRDAKKRGFRLAGDLLPFTHGSYIGSLADN 75
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ S Y + + +P +D + L
Sbjct: 76 GLSFINAASETHQYRHIAGDLSKNAYATYILALADHAFADGQPLGGWFDQVAAALALIDH 135
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ IE LL G +CV+ G L S + GG +C
Sbjct: 136 GQDEQVVTNVIETQLLTVFGVAPTWDRCVICGRADRPLDFSEQYGGMLCSQH 187
>gi|312793588|ref|YP_004026511.1| DNA repair protein reco [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312875915|ref|ZP_07735905.1| DNA repair protein RecO [Caldicellulosiruptor lactoaceticus 6A]
gi|311797396|gb|EFR13735.1| DNA repair protein RecO [Caldicellulosiruptor lactoaceticus 6A]
gi|312180728|gb|ADQ40898.1| DNA repair protein RecO [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 244
Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 3/187 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V+T +G+ +N + + + Q R
Sbjct: 4 IKTKGIVLKETNFEESSKILTVLTSDFGKIQVLSKNCRRLLSVLSAVSQPLMFCEFVIR- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V+ES +L +Y I + FL + ++ +L L
Sbjct: 63 KTKDIYSISSASVIESFFELSQDVNLAIYSGYLIELVDSFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K + E+ +L GF T+CV G +
Sbjct: 123 LKKGKDPEVVSRIFEIKILVYTGFFPQFTQCVKCQRKDITRAFFSFKNGGLTCEACKEDN 182
Query: 181 EKMLVLP 187
+ + +
Sbjct: 183 DIEIEIE 189
>gi|297590890|ref|ZP_06949528.1| recombination protein O [Staphylococcus aureus subsp. aureus MN8]
gi|297575776|gb|EFH94492.1| recombination protein O [Staphylococcus aureus subsp. aureus MN8]
gi|315195468|gb|EFU25855.1| putative recombination protein O [Staphylococcus aureus subsp.
aureus CGS00]
Length = 248
Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNKW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDVAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKYDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|167759229|ref|ZP_02431356.1| hypothetical protein CLOSCI_01576 [Clostridium scindens ATCC 35704]
gi|167663103|gb|EDS07233.1| hypothetical protein CLOSCI_01576 [Clostridium scindens ATCC 35704]
Length = 247
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 3/216 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++L GE + + ++T++ G+ F R + + +
Sbjct: 3 QVTVTGMVLKASPIGEYDRRVVILTKERGKITAFARGARRPNSSLVGVTSPFTFGEFMVY 62
Query: 62 LAQNLGEFRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++ + + YG + + E + +L L
Sbjct: 63 EGRTSFTLVSASVTNYFSELRIDVEGAYYGFYFLEFADYYAREYNDETQPLKLLYQTLRA 122
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ EL + G + KC+ G + S + GG VC +
Sbjct: 123 LTNPHLDNRLVRYIYELKAVAINGEAPQVFKCICCGDRERPALFSVRKGGLVCSACSGRI 182
Query: 180 -AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
L + + F + + L
Sbjct: 183 TDGMALKTSTLYAMQYIISSNIEKLYTFTVKEEILE 218
>gi|330997805|ref|ZP_08321640.1| DNA repair protein RecO [Paraprevotella xylaniphila YIT 11841]
gi|329569693|gb|EGG51458.1| DNA repair protein RecO [Paraprevotella xylaniphila YIT 11841]
Length = 285
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + ++L Y + ++I+++ T G V+ +S + + +++ ++
Sbjct: 45 MQEKTQGVVLRTLKYNDNSLIVDIYTAIRGTVSFMVKLPKSRKAALKGVFFRPLSILEID 104
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L R + L L L R L E L+ +
Sbjct: 105 FDYRQKSALQRIRDVRFKYVYQTLPYDPRKSSMALFLAEFLCRVLKHEEGSDTLFSYILY 164
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTK 150
L F L + +GF ++ +
Sbjct: 165 SLQWLDASGEGFSNFHLVFLTRLTRFLGFYPNVEE 199
>gi|168704036|ref|ZP_02736313.1| probable DNA repair protein recO [Gemmata obscuriglobus UQM 2246]
Length = 308
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP--ILQAGNLVRVNWRSRLAQ 64
AI+ + E + I + TR++G+ + G+ + + V + + +
Sbjct: 8 AIVTRGTDWSETSRITTLFTREFGKIRALAKGGRRLKSNFDVAFDLLTVCEVVFIRKASG 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E A + G L L + +P L+D L
Sbjct: 68 LELLTEARMNEQFPALRKNLPALYAGYYVAELLAEGLQDYDPHPVLFDAALAILRAL 124
>gi|239631409|ref|ZP_04674440.1| DNA repair protein recO [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239525874|gb|EEQ64875.1| DNA repair protein recO [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 259
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 4/199 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ +++ ++Y E +++++++T ++G+ + + + ++ R +
Sbjct: 9 EGLVMSRQNYRESDMLVKILTDRFGKKMFLLNRARKPGFTLGAGILPFTHADYIGEVRES 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + +L Y + P+ P ++ + L
Sbjct: 69 GLSYLSAIKNATQYRQISDDITLNAYAAYIFGLIDLAFPDGRPVGFWFNQIKQALYLIDS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I IE+ +LK G + CV+ G L S GG +C++ ++
Sbjct: 129 GLDPQIIANVIEVQMLKEYGVEPNWRGCVIDGRADLPLDFSESYGGLLCQNHWDKDPHRL 188
Query: 184 LVLPS--FLWKEEQTIDAD 200
P F + T+D +
Sbjct: 189 HASPRAIFYLRRFSTLDLN 207
>gi|118462249|ref|YP_881252.1| DNA repair protein RecO [Mycobacterium avium 104]
gi|118163536|gb|ABK64433.1| DNA repair protein RecO [Mycobacterium avium 104]
Length = 256
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 6/171 (3%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRLAQNLG 67
L GE + I+ ++TR +G + + + L+ +
Sbjct: 2 LRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIDAQLHP-GRNLDI 60
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +++ ++S +++ L E +
Sbjct: 61 VTQVVSIDAFATDIVSDYGRYTCACAMLETAERLAGEERAPAPALHGLTVSALRAVADGR 120
Query: 128 GKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ ++ LL+ + G+ LT+C +GG+VC
Sbjct: 121 RSRDLLLDAYLLRAMGIAGWAPALTECARCATPGPHRAFHVGAGGSVCPHC 171
>gi|88195374|ref|YP_500178.1| hypothetical protein SAOUHSC_01667 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|284024625|ref|ZP_06379023.1| hypothetical protein Saura13_08540 [Staphylococcus aureus subsp.
aureus 132]
gi|87202932|gb|ABD30742.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|269941056|emb|CBI49440.1| putative recombination protein O [Staphylococcus aureus subsp.
aureus TW20]
gi|302751397|gb|ADL65574.1| putative recombinational DNA repair protein (RecF pathway)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|315198739|gb|EFU29067.1| hypothetical protein CGSSa01_09464 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140549|gb|EFW32403.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144086|gb|EFW35855.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314242|gb|AEB88655.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus T0131]
Length = 248
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|323340795|ref|ZP_08081047.1| recombination protein O [Lactobacillus ruminis ATCC 25644]
gi|323091918|gb|EFZ34538.1| recombination protein O [Lactobacillus ruminis ATCC 25644]
Length = 264
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 57/172 (33%), Gaps = 3/172 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR-LAQN 65
I++ R Y E++++++++T +YG ++R + + +
Sbjct: 11 GIVVSKRDYKERDLLVKILTNRYGYKTFYIRGAKKRGFRLGAIILPFSHGRYLGSINDDG 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFLNCHKI 123
L + + + ++ L + + + Y + L
Sbjct: 71 LSYLSTGKEIDQYQNIFNDIMLNAYASYVLGLGEAAIKDDCILASQWYRKIERALQLIDQ 130
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I +E+ +L+ G + C V G + S GG +C++
Sbjct: 131 GVNPLIIVSIMEIQMLELFGVAPEWRFCAVCGNQRSSFDYSESYGGILCKNH 182
>gi|212696009|ref|ZP_03304137.1| hypothetical protein ANHYDRO_00545 [Anaerococcus hydrogenalis DSM
7454]
gi|212676996|gb|EEB36603.1| hypothetical protein ANHYDRO_00545 [Anaerococcus hydrogenalis DSM
7454]
Length = 224
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 8/176 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+ +L +Y E + I+E+ T+ G+ + + + + V+ ++ +
Sbjct: 10 EGFVLREFTYKESSKIIEIFTKNMGKISVIAKGVLNKKNTNLSSTQRFVKASYNLYKSGD 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L +K + + +I L + + +Y++L+ +
Sbjct: 70 KFFGIKDASLIKSYSKSNKNFDIIVYKSAICDLLLRTIDFDQKELVYNLLDKTFESFEKA 129
Query: 125 SVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSV 175
LLK I GF +L C + G + + ++ S + GG VC S
Sbjct: 130 --SENYLNIFLCFLLKYISFSGFKPNLKGCSICGENIKPNYVYFSIEDGGVVCNSC 183
>gi|189464546|ref|ZP_03013331.1| hypothetical protein BACINT_00888 [Bacteroides intestinalis DSM
17393]
gi|189438336|gb|EDV07321.1| hypothetical protein BACINT_00888 [Bacteroides intestinalis DSM
17393]
Length = 245
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 5/169 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + ++I ++ T GR V+ +S + + Q LV +
Sbjct: 1 MLQKTLGIVLHTLKYNDTSLIADIYTEVVGRASFIVKIPRSRKAAVKPVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R ++ + + + L L+R + E L+ L
Sbjct: 61 ADFRPNASIYKITEAKSFYPFSSIPYDPYKSSIALFLAEFLYRAVREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVS 164
+ + + L + +G +L L
Sbjct: 121 SIIWLDECRDNFANFHLVFLMRLSRFLGLYPNLEDYQKGDYFDMLNACF 169
>gi|308048451|ref|YP_003912017.1| DNA repair protein RecO [Ferrimonas balearica DSM 9799]
gi|307630641|gb|ADN74943.1| DNA repair protein RecO [Ferrimonas balearica DSM 9799]
Length = 241
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 15/232 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLA 63
A +L R Y E +++L++++ +GR R + LQ + ++ R
Sbjct: 9 RAYLLHARPYRESSLLLDLLSETHGRVAAVARVGGKTGGARKAQLQPFRPLMISLSGRST 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
++ L+ GL R L E +P L+D + L
Sbjct: 69 LRT---LAQLEAPTLPMPLNGQRLFAGLYLNELCQRLLREWQPLDGLFDHYHEALLGLAG 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVS-PKSGGAVCRSVGLPYAEK 182
+ + + E LL +G + + G V R
Sbjct: 126 ETPMEPHLREFERALLDLLGVLPPPGEDADGVALMAEARYAWQPQQGWVLRGAAGSGYSG 185
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFL 233
+L + + + +K A + L+ + R FL
Sbjct: 186 DSLLQWQQQRLQTPQAMNEIKRA--------VRELLRPLLGDKPLHSRTLFL 229
>gi|210617162|ref|ZP_03291429.1| hypothetical protein CLONEX_03651 [Clostridium nexile DSM 1787]
gi|210149437|gb|EEA80446.1| hypothetical protein CLONEX_03651 [Clostridium nexile DSM 1787]
Length = 242
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 2/177 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
+IL GE + + ++T++ G+ F + + + + ++
Sbjct: 2 GMILSASPIGENDKRIVILTKEKGKISAFAKGARRQNSHLLGATNPFSFGEFVLYEGRSS 61
Query: 67 GEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KIP 124
+ ++ +L YG + + E ++ +L L
Sbjct: 62 YNLMQANISNYFMELATDLEGAYYGFYFMEFADYYTKEHNDERQMLRLLYQTLRALSSNK 121
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ EL L G D+ C G + + S ++ G VC ++
Sbjct: 122 IPRELVRYIFELKTLVVNGEYPDVFHCTGCGAQEQGVLFSSRNRGIVCEKCRRTVSD 178
>gi|291522459|emb|CBK80752.1| DNA replication and repair protein RecO [Coprococcus catus GD/7]
Length = 250
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 61/185 (32%), Gaps = 2/185 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ + GE + + ++T++ G+ GF R + + A V + ++
Sbjct: 8 TGMVISTMAVGEYDKRVVILTKERGKIHGFARGAKRPGNSLMAAAQPFVFGEFMLLEGRS 67
Query: 66 LGEFRFEVLESHCAKLLSSSLF-LYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ + YG + + E LE+ +L +
Sbjct: 68 AYTISSVKVMNYFEEFRKDMDATCYGCYFLEFADYYGRENADDLEMLKLLYQTVRALCKK 127
Query: 125 SV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
++ I EL ++ G +C T++L S + G +C
Sbjct: 128 TIAYPLIRCIYELKIMAVNGECPQCFECACCHTTENLSVFSARYRGLLCEKCAGHEKMTT 187
Query: 184 LVLPS 188
+ +
Sbjct: 188 ISISP 192
>gi|300866448|ref|ZP_07111140.1| DNA repair protein recO [Oscillatoria sp. PCC 6506]
gi|300335552|emb|CBN56300.1| DNA repair protein recO [Oscillatoria sp. PCC 6506]
Length = 306
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 11/210 (5%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRV 56
M ++ I L GE + +L ++TR++G + R + + +
Sbjct: 1 MNRTYKATGINLKSMPMGEHDRLLTILTREFGLIRAVAPGVRKQRSHLGGRSELFVVNEL 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
++ + E +ES+ G + +P EL+ +LN
Sbjct: 61 LL-AKGRSLDKITQAETIESYSGLSRDLGKLASGQYLAELVLTQALSEQPQEELFSLLNE 119
Query: 117 FLNCHKIPSVIGK------IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
L+ + LL G + C +T + + P
Sbjct: 120 HLSRLERLPRKTDSKTVVAHLAHGIFHLLALGGIAPQVQVCGITQRPLNPNFTDPDWQVG 179
Query: 171 VCRSVGLPYAEKMLVLPSFLWKEEQTIDAD 200
S G + L + ++I+ +
Sbjct: 180 FSISDGGTISLSELASLEIKQQGNESIEKE 209
>gi|225010218|ref|ZP_03700690.1| DNA repair protein RecO [Flavobacteria bacterium MS024-3C]
gi|225005697|gb|EEG43647.1| DNA repair protein RecO [Flavobacteria bacterium MS024-3C]
Length = 239
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 59/202 (29%), Gaps = 7/202 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM----QPILQAGNLVRV 56
M AI+L YG+ ++I+++ T G + S + + + + +
Sbjct: 1 MQQTTKAIVLKTIKYGDNSLIVKLYTASSGLKSYMLNGVLSRKKGKFNKAHFLPLSQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ R NL L + + + L L + E EL+ +
Sbjct: 61 VAQHRDKGNLERLIEAKLSYPYQSAHTHMAKNAIVLFLSEFLSNAIQEETENKELFSFIE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
L I + + + K GF DL+ S + +
Sbjct: 121 TALQWLDNEDQIANFHLFFLVEISKYFGFYPSDNHMDSPYF--DLVEGDFCSHAGLNPHM 178
Query: 176 GLPYAEKMLVLPSFLWKEEQTI 197
G P + + + I
Sbjct: 179 GEPEISFFKSILGINFDKLNDI 200
>gi|227534996|ref|ZP_03965045.1| recombination protein RecO [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227187387|gb|EEI67454.1| recombination protein RecO [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 259
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 4/199 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLA 63
+ +++ ++Y E +++++++T ++G+ + + + ++ R +
Sbjct: 9 EGLVMSRQNYRESDMLVKILTDRFGKKMFLLNRARKPGFTLGAGILPFTHADYIGEVRES 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + +L Y + P+ P ++ + L
Sbjct: 69 GLSYLSAIKNATQYRQISDDITLNAYAAYIFGLIDLAFPDGRPVGFWFNQIKQALYLIDS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I IE+ +LK G + CV+ G L S GG +C++ ++
Sbjct: 129 GLDPQIIANVIEVQMLKEYGVEPNWRGCVIDGRADLPLDFSESYGGLLCQNHWDKDPHRL 188
Query: 184 LVLPS--FLWKEEQTIDAD 200
P F + T+D +
Sbjct: 189 HASPRAIFYLRRFSTLDLN 207
>gi|282880623|ref|ZP_06289329.1| DNA repair protein RecO [Prevotella timonensis CRIS 5C-B1]
gi|281305518|gb|EFA97572.1| DNA repair protein RecO [Prevotella timonensis CRIS 5C-B1]
Length = 241
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + +AI+L YG+ +I+++ T + G R ++ + Q + +
Sbjct: 1 MLVKTEAIVLRALKYGDAQLIVDLFTERMGCVTFIHRVKKTKHGRIGVQFFQPLTHLEIE 60
Query: 58 WRS-RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + ++ + + + L L++ + + LY +
Sbjct: 61 YDALHNGRLPRLKEVRMVNPYLSIPFDALKLSISLFIAEFLYQCVKGEQASGALYQYVTT 120
Query: 117 FLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
++ + + L L + IGF +L
Sbjct: 121 SVHWLDAATAGFANFHLVFMLHLTRFIGFYPNLEDDTGHDFFD 163
>gi|242279454|ref|YP_002991583.1| DNA repair protein RecO [Desulfovibrio salexigens DSM 2638]
gi|259563676|sp|C6BV69|RECO_DESAD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|242122348|gb|ACS80044.1| DNA repair protein RecO [Desulfovibrio salexigens DSM 2638]
Length = 246
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 3/159 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRV-N 57
M + +IL + E ++ + ++ G F G R + L+ + V
Sbjct: 1 MELTEKVVILKTGKFKENDLWVRFLSATRGVQNAFAFGGSRSRRRFGGCLEPFSQVLFKT 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++ +++ + + + ER+ ++D+L
Sbjct: 61 GTNKTGTYQVLQEGSLVKGYPGIRSDFRKMGLAANCFKFIESAVLERDGNRAVFDLLTET 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
L+ + + + G+ D T C G
Sbjct: 121 LDVIEEADPDDFFPLFFRAKVAFEQGYNPDFTICAQCGK 159
>gi|296394229|ref|YP_003659113.1| DNA repair protein RecO [Segniliparus rotundus DSM 44985]
gi|296181376|gb|ADG98282.1| DNA repair protein RecO [Segniliparus rotundus DSM 44985]
Length = 247
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 62/178 (34%), Gaps = 6/178 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
++D ++L GE + I+ ++TR++G + + + L+ + V V
Sbjct: 4 YRDVGVVLRNHQLGEADRIVALLTREHGVVRAVAKGVRRTRSKFGARLEPFSCVDVQLYQ 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + L+++ ++ + +I+ L +
Sbjct: 64 GRSLDV-ITQAMTLDANSEEITADYGKYTTGCAILETATLLAGPQGAPAQQLHTLTRGAL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L+ + G+ L C G +P++GGAVC
Sbjct: 123 VALRKGEKPRDLILSAFFLRAMGHAGWMPALVDCARCGAQGPHRAFNPRAGGAVCPLC 180
>gi|304380845|ref|ZP_07363505.1| recombination protein O [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|304340572|gb|EFM06506.1| recombination protein O [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
Length = 248
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|325849578|ref|ZP_08170816.1| DNA repair protein RecO [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480059|gb|EGC83136.1| DNA repair protein RecO [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 252
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 66/176 (37%), Gaps = 8/176 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+ +L +Y E + I+E+ T+ G+ + + + + V+ ++ + +
Sbjct: 10 EGFVLREFTYKESSKIIEIFTKNMGKISVIAKGVLNKKNTNLSSTQRFVKASYNLYKSGE 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L +K + + +I L + + +Y++L+ +
Sbjct: 70 KFFGIKDASLIKSYSKSNKNFDIIVYKSAICDLLLRTIDFDQKELVYNLLDKTFESFEKA 129
Query: 125 SVIGKIFVQIELMLLKNI---GFGLDLTKCVVTG--VTQDLLWVSPKSGGAVCRSV 175
LLK I GF +L +C + G + + ++ S + GG VC S
Sbjct: 130 --SENYLNIFLCFLLKYISFSGFKPNLKECSICGENIKPNYVYFSIEDGGVVCNSC 183
>gi|291524970|emb|CBK90557.1| DNA replication and repair protein RecO [Eubacterium rectale DSM
17629]
Length = 242
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 2/179 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L G+ + + ++T++ G+ F R + Q + + + +N
Sbjct: 8 TGMVLSAMPVGDFDKRITILTKERGKITAFARGARRPNSQLMAGSNPFSFGEFELFEGKN 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ +L +Y G + F E ++ +L L + P
Sbjct: 68 AYSLSKVTISNYFRELTQDLEAVYTGFYFLEFCGYFCQENNDEKDMLKLLYQSLRALESP 127
Query: 125 -SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ EL + G G L C+ + L S + GG C + G +
Sbjct: 128 AYKNELVRAVFELKAITINGEGPLLFSCIHCHSREGLNVFSARRGGVFCDNCGTQVQGR 186
>gi|320529425|ref|ZP_08030513.1| DNA repair protein RecO [Selenomonas artemidis F0399]
gi|320138391|gb|EFW30285.1| DNA repair protein RecO [Selenomonas artemidis F0399]
Length = 242
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 70/202 (34%), Gaps = 3/202 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + IILG +++GE + ++ V TR+ G + R V +++
Sbjct: 1 MLYTAEGIILGAKNWGEADKVMTVFTRERGMLRAAAFGCRRPRSALAGAMQMFVHADFQL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
L + V+ +H AKL + Y + FLPE P + +D L L
Sbjct: 61 AEGPRLETVKTAVVRAHHAKLSADLTALAYATFVAEVVREFLPEGVPDEQFFDRLAQILT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L G G +C+ G + + GGA+C
Sbjct: 121 AFETRNPRITALAAVLQ-ILSAAGLGQTYERCLHCGTEITGNAFFHAREGGALCAGCRTA 179
Query: 179 YAEKMLVLPSFLWKEEQTIDAD 200
AE L D
Sbjct: 180 DAEDFPAELRELLTGLGAFDWA 201
>gi|148268050|ref|YP_001246993.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus JH9]
gi|150394118|ref|YP_001316793.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus JH1]
gi|253316041|ref|ZP_04839254.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253732219|ref|ZP_04866384.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733184|ref|ZP_04867349.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006352|ref|ZP_05144953.2| DNA repair protein RecO [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|269203194|ref|YP_003282463.1| RecO family DNA repair protein [Staphylococcus aureus subsp. aureus
ED98]
gi|296275812|ref|ZP_06858319.1| DNA repair protein recO [Staphylococcus aureus subsp. aureus MR1]
gi|147741119|gb|ABQ49417.1| DNA replication and repair protein RecO [Staphylococcus aureus
subsp. aureus JH9]
gi|149946570|gb|ABR52506.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus JH1]
gi|253724008|gb|EES92737.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728724|gb|EES97453.1| recombination protein RecO [Staphylococcus aureus subsp. aureus
TCH130]
gi|262075484|gb|ACY11457.1| RecO family DNA repair protein [Staphylococcus aureus subsp. aureus
ED98]
gi|312829954|emb|CBX34796.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129844|gb|EFT85834.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus CGS03]
Length = 248
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|298694848|gb|ADI98070.1| probable recombination protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 248
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|311748757|ref|ZP_07722542.1| DNA repair protein RecO [Algoriphagus sp. PR1]
gi|126577291|gb|EAZ81539.1| DNA repair protein RecO [Algoriphagus sp. PR1]
Length = 229
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----V 56
M + I+L Y E +II+++ TR+ G V +S + + + + V
Sbjct: 1 MLHKTKGIVLSYFRYKETSIIVKIFTRELGLKPYLVNGVRSQKSKSKIALYQPMTLLDLV 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + ++ ++ + L + R + E L+D L++
Sbjct: 61 VYNKENSGLQRISEAKLAKAQQLTPFDFNRTGLALFMTEIVSRSIFENYQNEHLFDFLSM 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLD 147
+ K F + K +GF D
Sbjct: 121 SILVLDQKDTSLKHFPLVFLMEQAKYLGFAPD 152
>gi|120437510|ref|YP_863196.1| DNA repair protein RecO [Gramella forsetii KT0803]
gi|254764634|sp|A0M684|RECO_GRAFK RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|117579660|emb|CAL68129.1| DNA repair protein RecO [Gramella forsetii KT0803]
Length = 239
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 5/222 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR----MQPILQAGNLVRV 56
M AII+ YGE ++I++ T G ++ R + Q+ + +
Sbjct: 1 MLIHTKAIIISALKYGEADLIVKAYTLSDGLCTYMLKGVLKSRKGKFKASMFQSLTQLEI 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
R + + + ++ + + L + E E L+ L
Sbjct: 61 VANHRGGGKMEYLKEAKVTGNYQSLHTHPIKLAMVMFLAEMLRNAIREEESNEPLFHYLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I + L L + +GF ++ + S C
Sbjct: 121 YSFQFLDSTDKIANFHLLFLLNLTRYLGFQPEMGIKDLPVFNLLDGIFQDFSSNDYCIEG 180
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
K + F + ++ S + + +
Sbjct: 181 KNVDLLKSFLGTDFDALQYIKMNQTSRNDFLSMLLLYYELHI 222
>gi|302871792|ref|YP_003840428.1| DNA repair protein RecO [Caldicellulosiruptor obsidiansis OB47]
gi|302574651|gb|ADL42442.1| DNA repair protein RecO [Caldicellulosiruptor obsidiansis OB47]
Length = 244
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 3/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V T +G+ +N + + + Q R
Sbjct: 4 IKTKGIVLKEINFEESSKILTVFTSDFGKIQVLSKNCKRLLSVLSAVSQPLMYCEFVIR- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V+ES +L +Y I + FL + ++ +L L
Sbjct: 63 KTKDIFSISSASVIESFFELSQDVNLAIYSGYLIELVDSFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
K + E+ +L GF T+CV
Sbjct: 123 LKKGKDPEVVSRIFEIKILVYTGFFPQFTQCVKCQRKD 160
>gi|222111789|ref|YP_002554053.1| DNA repair protein Reco [Acidovorax ebreus TPSY]
gi|254790520|sp|B9MDP4|RECO_DIAST RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|221731233|gb|ACM34053.1| DNA repair protein RecO [Acidovorax ebreus TPSY]
Length = 262
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 3/138 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A +L + + ++ILE TR YGR + + +P+L +RV +
Sbjct: 8 DEPAYVLHSYDWSDSSLILETFTRHYGRVALVAKGAKKPTSNFRPVLLPLQPLRVTYTLG 67
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + + L GL L R L + L+D +
Sbjct: 68 GEGHGEIHALKGAEWAGGHVMPTGDALLSGLYLNELLLRLLAREDTHAPLFDTYAGVVRV 127
Query: 121 HKIPSVIGKIFVQIELML 138
G+ +E +L
Sbjct: 128 LATVDHEGEHGDALEPVL 145
>gi|227529167|ref|ZP_03959216.1| recombination protein O [Lactobacillus vaginalis ATCC 49540]
gi|227350892|gb|EEJ41183.1| recombination protein O [Lactobacillus vaginalis ATCC 49540]
Length = 256
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ R Y E++++++++T + G + FV+ + + + L N
Sbjct: 9 RGIIMFRRDYRERDLLVKILTDKIGPAMFFVKGAKKRGFRLAADILPFTHGEYIGSLTDN 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + S Y + + + + ++ + L+
Sbjct: 69 GLSFINTASDTSQYRSIASDISKNAYATYILALVDSAFQDGQGIGGWFNQVAAALDLINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I IE LL G +CV+ G L S + GG +CR+
Sbjct: 129 GLDEQVIANVIETQLLVRFGVAPTWDRCVICGRDDLPLDFSEQYGGMLCRNH 180
>gi|241668235|ref|ZP_04755813.1| DNA repair protein RecO [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876770|ref|ZP_05249480.1| DNA repair protein recO [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842791|gb|EET21205.1| DNA repair protein recO [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 233
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 89/233 (38%), Gaps = 14/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLV--RVNWRSRLAQN 65
IL Y E ++++ + TR++G+ G +R + + + Q + +++ +
Sbjct: 8 YILHQCKYQENSLLVSIFTREFGKISGLIR--VNKKTINLYQPLVKLRGQISLAKKSDGL 65
Query: 66 LGEFRFEVLES-HCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ E +ES + ++ Y + I L + E E E Y + +N
Sbjct: 66 SKIYNVEFVESFYQNTYINLLSLQYMNELIYLLLSYSHEEEFLFEKYGFILKNINEINYK 125
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ EL LL ++G G+ + + + + L S + G +P +
Sbjct: 126 ----YLLRMFELELLDSLGQGIYVDCDIDGMLIDESLNYSILTAGFKKNLSAIPNSIAGK 181
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
L + + + + LK+ ++T +++ YAL R+ + L
Sbjct: 182 NLLK-INQSVSSWTDEDLKAISKVTRAYID-YALA---GKQLRSRKLLIDYLN 229
>gi|261366883|ref|ZP_05979766.1| DNA repair protein RecO [Subdoligranulum variabile DSM 15176]
gi|282570997|gb|EFB76532.1| DNA repair protein RecO [Subdoligranulum variabile DSM 15176]
Length = 247
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++L GE + IL ++T + G + + + G +
Sbjct: 1 MQIATTGLVLRQVKVGEADQILTLLTPELGVVSASAKGSLRLKNKLFSACGLFCYSEFSL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLE--LYDMLNIFL 118
++ ++ + S + + + L P + L +LN
Sbjct: 61 TSGRSHYFVESAQVKKVFHGVSESVEAMSLATYMAEIVLSLSPAPPEADAQLRLLLNSLY 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ-DLLWVSPKSGGAVCRSVGL 177
+ ++ EL + G+ +L C G + + P G +C
Sbjct: 121 MIGLKKLSLRQLKTIYELRAMSMAGYQPNLLACSECGKYEGGEFYFDPVEGNLLCEECAD 180
Query: 178 PYAE 181
Sbjct: 181 KARH 184
>gi|56750569|ref|YP_171270.1| DNA repair protein RecO [Synechococcus elongatus PCC 6301]
gi|81299793|ref|YP_400001.1| DNA repair protein RecO [Synechococcus elongatus PCC 7942]
gi|62287376|sp|Q5N4L9|RECO_SYNP6 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|123557076|sp|Q31PK5|RECO_SYNE7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|56685528|dbj|BAD78750.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168674|gb|ABB57014.1| DNA replication and repair protein RecO [Synechococcus elongatus
PCC 7942]
Length = 266
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 7/155 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLV---RVNWR 59
+ AI+L GE + +L +++ G + R + + V +
Sbjct: 5 YTTTAIVLKATPLGEADRLLTLLSPDQGLLRVVATGARKPRSKLGGRTALFVVGDCLIAC 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ L + E L SH A + + ER P EL+ +L L
Sbjct: 65 GKSLDRL--QQVETLTSHTALSGDLARLAAAQYLTELVLAQALERHPQPELFALLCRDLA 122
Query: 120 CHKIPSVIGKIFVQIE--LMLLKNIGFGLDLTKCV 152
+ S + + ++ LL G+ C
Sbjct: 123 RIETQSGLEVLPYLLQSTWQLLAWAGWAPQTHYCC 157
>gi|297207715|ref|ZP_06924150.1| recombination protein O [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911796|ref|ZP_07129239.1| recombination protein O [Staphylococcus aureus subsp. aureus TCH70]
gi|296887732|gb|EFH26630.1| recombination protein O [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886042|gb|EFK81244.1| recombination protein O [Staphylococcus aureus subsp. aureus TCH70]
Length = 248
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLFVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|282878005|ref|ZP_06286813.1| DNA repair protein RecO [Prevotella buccalis ATCC 35310]
gi|281299840|gb|EFA92201.1| DNA repair protein RecO [Prevotella buccalis ATCC 35310]
Length = 241
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR---NGQSHRMQPILQAGNLVRVN 57
M + AI+L YG+ +I ++ T+ G R +P Q ++ +
Sbjct: 1 MLVKTQAIVLRTIKYGDSQLITDLFTQAMGNVSFIQRMRTGKGGRVGKPYFQPLTILDIE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R + L + L + + +S L L+ + LY +
Sbjct: 61 FDERPNKQLQRIKEMRLAYPFSTIPFNSYKLSISLFLSEFLYFSVRGEHEVGALYQYVEN 120
Query: 117 FLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTK 150
+ + + L + IGF +L
Sbjct: 121 SIRWLDSAEGAFANFHLVFMMHLTRFIGFYPNLEN 155
>gi|323440464|gb|EGA98176.1| recombination protein [Staphylococcus aureus O11]
gi|323443238|gb|EGB00856.1| recombination protein [Staphylococcus aureus O46]
Length = 248
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L+ L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLDFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|298207087|ref|YP_003715266.1| possible DNA repair protein RecO [Croceibacter atlanticus HTCC2559]
gi|83849721|gb|EAP87589.1| possible DNA repair protein RecO [Croceibacter atlanticus HTCC2559]
Length = 238
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 4/205 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR----MQPILQAGNLVRV 56
M AI++ YGE ++I+++ T G +R + Q L+ V
Sbjct: 1 MLVTTKAIVISALKYGEADLIVKLFTESSGLKSYLLRGILKSKRGKFRASQFQPLTLLEV 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + L R + + L + L + + L R + E
Sbjct: 61 VAKHKDKGTLETLRDAKILATYQTLHTDLLKSTVIMFLAELLRNAIQEEEKNPELFGFLE 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + L +GF + T + S + C S
Sbjct: 121 TAFLWFDKYNSSNFHLLFLVKLSLFLGFYPEGTNKNASFFNLLDGTFQEVSTNSYCISGI 180
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADS 201
++L+ +F EE ++ +
Sbjct: 181 HKDTLELLLGINFDGLEELKLNQTN 205
>gi|298372573|ref|ZP_06982563.1| DNA repair protein RecO [Bacteroidetes oral taxon 274 str. F0058]
gi|298275477|gb|EFI17028.1| DNA repair protein RecO [Bacteroidetes oral taxon 274 str. F0058]
Length = 237
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/226 (13%), Positives = 69/226 (30%), Gaps = 14/226 (6%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWR 59
M +AI+L +Y + I+ + +RQ G +R + +L+ + V + +
Sbjct: 1 MLITTEAIVLNHIAYSDNKRIITLFSRQEGLLSAMLRSGNRKSTKVSLLEPFSTVEIIAK 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ L+ + + L L ++R + E+ LYD L+ ++
Sbjct: 61 RGNGSLVYINDISPLKIYKTIPFDAEKRLTTLFMAEVVYRTIREQYRDTSLYDFLDRTIS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKN---IGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
V + LL+ +G + + +
Sbjct: 121 LLDFTCD--NTLVFSLIFLLEYGRRLGIYPNTETYSEGAIFD---MQNGVFCRQTTHHEH 175
Query: 177 LPYAEKMLVLPSFLWKEEQTIDA-----DSLKSAFQLTDYFLNKYA 217
E +L FL ++ + D + + F +
Sbjct: 176 FATEESSRILAQFLNEKTDSYDIGQYTRTQMIEILDIVVRFFELHL 221
>gi|332525371|ref|ZP_08401534.1| DNA replication and repair protein RecO [Rubrivivax benzoatilyticus
JA2]
gi|332108643|gb|EGJ09867.1| DNA replication and repair protein RecO [Rubrivivax benzoatilyticus
JA2]
Length = 251
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 6/145 (4%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLAQN 65
+L + E ++I+E+ TR+ GR + + + +++P+L + V A
Sbjct: 12 YVLHSWDWSETSLIVELFTRERGRVVVAAKGAKRPTSQLRPVLLPFQRIAVQLGRTPADE 71
Query: 66 LGEFRFEVLESHCAKLLSSS--LFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
E + L + L ++ +L+D L +
Sbjct: 72 AAEIHTLRTAEWGGGVPPVPAAAMFSAFYCNELLMKLLARQDAYPQLFDAYAETLAA--L 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDL 148
+ EL+LL+ G +L
Sbjct: 130 AADEASALRAFELVLLRETGLLPEL 154
>gi|312437965|gb|ADQ77036.1| recombination protein O [Staphylococcus aureus subsp. aureus TCH60]
Length = 248
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEYGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNKW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDVAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKYDGAISRQEASKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|227498621|ref|ZP_03928765.1| DNA repair protein recO [Acidaminococcus sp. D21]
gi|226904077|gb|EEH89995.1| DNA repair protein recO [Acidaminococcus sp. D21]
Length = 247
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 7/201 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP--ILQAGNLVRVNWRS 60
+QD+A+IL VR++ + R +G+ + I+Q +RV
Sbjct: 6 FQDEAVILEVRNWQTADKYAVCFCRHHGKVPFIAYGAAYPKSTSGRIVQPFAQLRVTLMP 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++ YG + + E EP E + ++
Sbjct: 66 GRKVATLRGCEFM---NLPHVMDIEGMAYGAIIAEAVMQLFEEEEPLEEAFFLICQAFT- 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPY 179
+ LL GF L C G ++ + SP GG +CR L +
Sbjct: 122 LFPNHNKRLVTDSTLFKLLALCGFDPVLDYCTTCGKPMEEDGYFSPVQGGFLCRDCALDH 181
Query: 180 AEKMLVLPSFLWKEEQTIDAD 200
+ V L + T+D
Sbjct: 182 DLPLTVKAKALVQHLLTLDFK 202
>gi|319900372|ref|YP_004160100.1| DNA replication and repair protein RecO [Bacteroides helcogenes P
36-108]
gi|319415403|gb|ADV42514.1| DNA replication and repair protein RecO [Bacteroides helcogenes P
36-108]
Length = 242
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II EV T GR V +S + + Q LV +
Sbjct: 1 MLQKTQGIVLHTLKYKDTSIIAEVYTEVAGRASFMVPVPRSRKAVVKAVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
R ++ + + + L L L+R + E L+ L
Sbjct: 61 ADFRPNASIYKIKEAKSSWPFSTLPYDPCKAAIALFLSEFLYRAVREEAENRPLFAYLRH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SIIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHRGDYFD 163
>gi|300361842|ref|ZP_07058019.1| recombination protein O [Lactobacillus gasseri JV-V03]
gi|300354461|gb|EFJ70332.1| recombination protein O [Lactobacillus gasseri JV-V03]
Length = 250
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +++ ++MT+ +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADVLAKIMTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L
Sbjct: 69 GISTLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKDIGSFYDLIMKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I ++L LL G L +C++ G Q S + GG +C +++M
Sbjct: 129 GEDAAIITQMVQLKLLNAYGVAPQLDRCLICGKVQGTFDYSLELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKVVA 196
>gi|312622366|ref|YP_004023979.1| DNA repair protein reco [Caldicellulosiruptor kronotskyensis 2002]
gi|312202833|gb|ADQ46160.1| DNA repair protein RecO [Caldicellulosiruptor kronotskyensis 2002]
Length = 244
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 3/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V+T +G+ +N + + Q R
Sbjct: 4 IKTKGIVLKETNFEESSKILTVLTSDFGKIQVLSKNCRRLLSVLSACSQPLMFCEFVIR- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V+ES +L +Y I + FL + ++ +L L
Sbjct: 63 KTKDIYSISSASVIESFFELSQDVNLAIYSGYLIELVDSFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
K + E+ +L GF T+CV
Sbjct: 123 LKKGKDPEMVSRIFEIKILVYTGFFPQFTQCVKCQRKD 160
>gi|228475983|ref|ZP_04060691.1| DNA repair protein RecO [Staphylococcus hominis SK119]
gi|228269806|gb|EEK11286.1| DNA repair protein RecO [Staphylococcus hominis SK119]
Length = 249
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 9/201 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + VR + + V +
Sbjct: 1 MLEKQKGIIIKSVDYGESDKIITILNEHGAKIPIMVRRAKKSKTGLQAHTQLFVYGLFIY 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+V+ + L Y + + R L E L Y +L LN
Sbjct: 61 NKWKGMGTLSSIDVINQYYQLRLDIFDSSYATLCVEAIDRSLEPDEVSLYHYKLLEFVLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVC----- 172
+ + + + L + GFG C +TG T L+ S K G +
Sbjct: 121 KISEGNSAQLMSIIVLLKCMNKFGFGAFFNYCAITGDTDQSKLIAYSFKYDGTISETVLN 180
Query: 173 -RSVGLPYAEKMLVLPSFLWK 192
L + K L L K
Sbjct: 181 NDPYALKLSNKTFYLLDILQK 201
>gi|283470844|emb|CAQ50055.1| DNA repair protein RecO [Staphylococcus aureus subsp. aureus ST398]
Length = 248
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 3/181 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ II+ YGE + I+ ++ + R + + Q V +
Sbjct: 2 RQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQW 61
Query: 64 QNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ +G +V+ H + + Y + + R + E + Y +L L +
Sbjct: 62 RGMGTLNSVDVISQHYKLQMDLYVSSYSSLAAETIERSMDEGDIAPYNYQLLQFVLEKIE 121
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLPYA 180
+ + V + L +K GF +C V+G DL+ S K GA+ R
Sbjct: 122 SGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAFKDV 181
Query: 181 E 181
Sbjct: 182 H 182
>gi|89900540|ref|YP_523011.1| DNA repair protein RecO [Rhodoferax ferrireducens T118]
gi|119361477|sp|Q21XM3|RECO_RHOFD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|89345277|gb|ABD69480.1| DNA repair protein RecO [Rhodoferax ferrireducens T118]
Length = 251
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 2 YWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
D+ A +L + E ++ILEV TR +GR + + +PIL L+ V +
Sbjct: 5 RISDEPAYVLHRHDWSESSLILEVFTRHHGRIALVAKGVKRPSSSFRPILLPLQLLHVAF 64
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + GL L L +P L+D+ +
Sbjct: 65 ---GGDAEIRILKAAEWQGGHVMPTGDALMSGLYLNELLLTLLARDDPHTRLFDVYTQVV 121
Query: 119 NCHKIPS 125
Sbjct: 122 QVIASGH 128
>gi|153809179|ref|ZP_01961847.1| hypothetical protein BACCAC_03490 [Bacteroides caccae ATCC 43185]
gi|149128155|gb|EDM19375.1| hypothetical protein BACCAC_03490 [Bacteroides caccae ATCC 43185]
Length = 242
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVAVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRIKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAVREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 121 SIIWLDECGGGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 171
>gi|325681541|ref|ZP_08161066.1| DNA repair protein RecO [Ruminococcus albus 8]
gi|324106808|gb|EGC01099.1| DNA repair protein RecO [Ruminococcus albus 8]
Length = 251
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 12/221 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH-RMQPILQAGNLVRVNW----RS 60
++L GE + + V+T + G +VR G+ + QA + + + +
Sbjct: 5 KGLVLKEIDSGESSKSICVLTAELGVIYIYVRGGRKSGKTASSTQALSYSTLCFEEKRNA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E ++ L + L E E E+ + L+
Sbjct: 65 KGQVSRYLNSSEPVKLFYNIRLDAKKVALAAYFSEMLIYCGTEGEDHTEVLRLALNSLHF 124
Query: 121 HK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS-GGAVCRSVGLP 178
+ E LL IG L C + C
Sbjct: 125 LNEDKMDPELLKCVFEFRLLCEIGLRPGLVGCANCFSYESEPMYFDFDRNCLECADCCQD 184
Query: 179 YAEKMLVLPS----FLWKEEQTIDADSLKSAFQLTDYFLNK 215
+ L+ +L + D + L F+++D +L K
Sbjct: 185 AENRGLMALDKTMLYLVRFIALTDYERLFY-FKISDRYLEK 224
>gi|298243469|ref|ZP_06967276.1| DNA repair protein RecO [Ktedonobacter racemifer DSM 44963]
gi|297556523|gb|EFH90387.1| DNA repair protein RecO [Ktedonobacter racemifer DSM 44963]
Length = 276
Score = 70.2 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 24/176 (13%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ DAIIL GE + +L ++T G+ + + R L+ R+ + +
Sbjct: 7 YSTDAIILKHSDLGEADRVLTLLTPYKGKIHAVAKGVRRPVSRKSGHLELLCQSRL-YIA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLL--SSSLFLYGLQSIVPLFRFLPEREPCLELY------- 111
+ + + ++ A + + RF+ + ++Y
Sbjct: 66 QGRNLHIITQAQTSDAFLALRQGDDIWYRTCAIYLAELVDRFVEDDTQHEDVYNLLLLAL 125
Query: 112 ------------DMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L+ + E+ LL IG+ L C
Sbjct: 126 KTLDEDARKVQQQHLDDSSEPEHERDRSMLLLRYFEIYLLSCIGYEPLLRTCAHCD 181
>gi|289209106|ref|YP_003461172.1| recombination protein O RecO [Thioalkalivibrio sp. K90mix]
gi|288944737|gb|ADC72436.1| Recombination protein O RecO [Thioalkalivibrio sp. K90mix]
Length = 219
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 9/143 (6%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
++L R+ E + +LE++T + GR VR +Q L+ + WR R
Sbjct: 9 TQGVVLHARALRENSRVLELLTGEAGRVAAVVRG-----KAGSVQPFVLLDLAWRGRGEL 63
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + L+ + GL + R P P E L
Sbjct: 64 PTLQVAEQQRVFP----LTGRTLVCGLYLNELVLRLYPREAPIPEALPALLTAYARLAAR 119
Query: 125 SVIGKIFVQIELMLLKNIGFGLD 147
+ + E LL I GL+
Sbjct: 120 ERADVVLRRAEWALLLPIDSGLE 142
>gi|167739549|ref|ZP_02412323.1| DNA repair protein RecO [Burkholderia pseudomallei 14]
Length = 207
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 11/211 (5%)
Query: 29 YGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSL 86
+GR + + + +LQ + ++W + L+
Sbjct: 1 HGRIALVAKGAKRPHSALRGVLQTFQPLSLSWSGKSELRT---LTGAEWVGGMLPLAGDA 57
Query: 87 FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGL 146
L G + L +F +P L+ + L ++ E +LL+ G+ +
Sbjct: 58 LLCGFYANELLVKFCAREDPHPPLFQHYLVTLTRLAHGEPPVQVLRSFERVLLRETGYAM 117
Query: 147 DLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE-KMLVLPSFLWKEEQTIDADSLKSA 205
L + V + V + + ++ + L EE +
Sbjct: 118 TLKRTVARRAVEPDKLYVFDPQRGVRDAGSDAPSHWPVIAGQTLLDMEEDDYHRAQTVAQ 177
Query: 206 FQLTDYFLNKYALQHNIIHCHLL-RENFLGK 235
+ L ++ L + L R+ +
Sbjct: 178 SKT----LMRFLLNTYLGGTPLATRQILIDL 204
>gi|312127539|ref|YP_003992413.1| DNA repair protein reco [Caldicellulosiruptor hydrothermalis 108]
gi|311777558|gb|ADQ07044.1| DNA repair protein RecO [Caldicellulosiruptor hydrothermalis 108]
Length = 244
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 3/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V+T +G+ +N + + + Q R
Sbjct: 4 IKTKGIVLKETNFEESSKILTVLTSDFGKIQVLSKNCRRLLSVLSAVSQPLMFCEFVIR- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R V+ES +L +Y I + FL + ++ +L L
Sbjct: 63 RTKDIYSISSASVIESFFELSQDVNLAIYSGYLIELVDTFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
K + E+ +L GF T+CV
Sbjct: 123 LKKGKDPEVVSRIFEIKILVYTGFFPQFTQCVKCQRKD 160
>gi|119513475|ref|ZP_01632500.1| DNA repair protein RecO [Nodularia spumigena CCY9414]
gi|119461876|gb|EAW42888.1| DNA repair protein RecO [Nodularia spumigena CCY9414]
Length = 295
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ I L + GE + I+ ++TR++G + ++G V ++
Sbjct: 5 YKATGINLKAQVLGESDRIVTILTREFGLIQAVAPGARKQNSSLGGRSGMFVVNELLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + ++++ G + +P ELY +LN +L+
Sbjct: 65 GRSLDRITQAQTVKTYPDLAKDLGKLAAGQYLAEIVLCQALSEQPQEELYQLLNEYLHQL 124
Query: 122 KIPSVIGKIFVQIE-----LMLLKNIGFGLDLTKCVVTGVT 157
++ + + G + C +T
Sbjct: 125 ELLPKTDTSAIYAQLAQGVFHFFALAGLSPQVQVCCLTQKI 165
>gi|42519245|ref|NP_965175.1| DNA repair protein RecO [Lactobacillus johnsonii NCC 533]
gi|61215125|sp|Q74IZ0|RECO_LACJO RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|41583533|gb|AAS09141.1| DNA repair protein RecO [Lactobacillus johnsonii NCC 533]
Length = 250
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +++ ++MT+ +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADVLTKIMTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L
Sbjct: 69 GISTLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKDIGSFYDLIIKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I ++L LL G L +C++ G Q S + GG +C +++M
Sbjct: 129 GEDAAIITQMVQLKLLNAYGVAPQLDRCLICGKVQGKFDYSLELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKVVA 196
>gi|220906414|ref|YP_002481725.1| DNA repair protein RecO [Cyanothece sp. PCC 7425]
gi|254790518|sp|B8HXS5|RECO_CYAP4 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|219863025|gb|ACL43364.1| DNA repair protein RecO [Cyanothece sp. PCC 7425]
Length = 293
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++ I L GE + +L ++TR+YG + R ++G V
Sbjct: 5 YKATGINLKAMPLGESDRLLTILTREYGLIRVVAPGARKPRSSLGGRSGLFVVNELLIAP 64
Query: 63 AQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++L + + E L S+ S + +P +EL+D+L +L+
Sbjct: 65 GRSLHKLSQAETLTSYARLSKHLSTLTASQYLAELVIYQALSEQPQVELFDLLCYYLSWL 124
Query: 122 KIPSVIGKIFV--QIELMLLKNIGFGLDLTKCV 152
+ + V + LL+ G + +C
Sbjct: 125 EQSPEQEVLAVLSRAVFHLLEWAGIAPQVQQCC 157
>gi|110639673|ref|YP_679883.1| DNA replication and repair protein RecO [Cytophaga hutchinsonii
ATCC 33406]
gi|110282354|gb|ABG60540.1| DNA replication and repair protein RecO [Cytophaga hutchinsonii
ATCC 33406]
Length = 224
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLV----RV 56
M + I+L Y + +II +V T +G + + +S + + + + V
Sbjct: 1 MLHKTKGIVLNYIKYSDTSIIAKVYTEAFGLQSYIINSVRSAKAKNKIALFQPLTLLDMV 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ E + + + L + L E EL+D L
Sbjct: 61 VYHKNNHGLQRISEMRCAEPYFSIPFDIHKTSISIFLSELLLKTLKEESDNQELFDFLFH 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLD 147
L+ F L +GF
Sbjct: 121 SLHALDKIEKNVLNFHVSFMLRYSFYLGFFPQ 152
>gi|262405439|ref|ZP_06081989.1| DNA repair protein RecO [Bacteroides sp. 2_1_22]
gi|262356314|gb|EEZ05404.1| DNA repair protein RecO [Bacteroides sp. 2_1_22]
Length = 242
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 121 SIIWLDECGDGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 171
>gi|253580800|ref|ZP_04858063.1| DNA repair protein RecO [Ruminococcus sp. 5_1_39B_FAA]
gi|251847870|gb|EES75837.1| DNA repair protein RecO [Ruminococcus sp. 5_1_39BFAA]
Length = 247
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 5/190 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + + ++TR+ G+ F + + Q + A V + ++
Sbjct: 5 QGVVLSAMPVGEYDKRIVLLTRERGKISAFAKGARRPNSQFLAAANPFVFGTFALYEGRS 64
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL--NCHKI 123
+ H +L +Y + L + + + L
Sbjct: 65 SYNLNQVSISHHFVELAGEQPGIYYGYYFLELADYFGQEGIDEKESMNLLYVTVKALLNP 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG---VTQDLLWVSPKSGGAVCRSVGLPYA 180
+ EL ++ G L CV V + L+ S ++ G + ++
Sbjct: 125 NIDNRLVRCIFELRMMAAQGLCPSLFHCVCCERQPVEGEELFFSQQNHGILDKACLGHVN 184
Query: 181 EKMLVLPSFL 190
+ + L
Sbjct: 185 DAKRISAPAL 194
>gi|75906952|ref|YP_321248.1| DNA repair protein RecO [Anabaena variabilis ATCC 29413]
gi|123610555|sp|Q3MF83|RECO_ANAVT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|75700677|gb|ABA20353.1| DNA replication and repair protein RecO [Anabaena variabilis ATCC
29413]
Length = 296
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 8/160 (5%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN- 57
M ++ I L ++ GE + I+ ++T+++G + + ++G V
Sbjct: 1 MNKTYKATGINLKAQAMGESDRIVTILTQEFGLIRAIAPGSRKYNSSLGGRSGMFVVNEL 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++ + + ++++ + +P ELY++LN
Sbjct: 61 LIAKGRSLDKITQAQTIKTYPGLAKDLGKLAASQYLAEIVLCQALSEQPQEELYELLNEH 120
Query: 118 LNCHKIPSVIGKIFV-----QIELMLLKNIGFGLDLTKCV 152
L+ + V LL G + C
Sbjct: 121 LHRLEELPKGESFGVLAYLAHAVFHLLALAGLTPQVQICC 160
>gi|87118654|ref|ZP_01074553.1| DNA repair protein RecO [Marinomonas sp. MED121]
gi|86166288|gb|EAQ67554.1| DNA repair protein RecO [Marinomonas sp. MED121]
Length = 254
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 8/195 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A ++ R + + I+L+++T + G R + + I +V + R
Sbjct: 11 AYVIHTRPFQDNKILLDLLTLEMGLVRAVFRLPK-KEARVIPGPFLRYQVQLKGRTELKT 69
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
A L G+ L + LP P +++ ++ +
Sbjct: 70 VYVLESTE---PASQLEGLRLFAGMYVHEILLKLLPTNLPLSIFFELYQWLIHSLHSNAP 126
Query: 127 IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVL 186
+ + + E L + IG ++L V + G +K L
Sbjct: 127 VAPLLRRFEYALFEEIGSSINLAMTATGSVLDPSAMYRFDVRFGLRPYYG----DKPKQL 182
Query: 187 PSFLWKEEQTIDADS 201
P + +D
Sbjct: 183 PDLFVSGQLALDYTE 197
>gi|268319373|ref|YP_003293029.1| DNA repair protein RecO [Lactobacillus johnsonii FI9785]
gi|262397748|emb|CAX66762.1| DNA repair protein RecO [Lactobacillus johnsonii FI9785]
Length = 250
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +++ ++MT +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADVLTKIMTEDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L
Sbjct: 69 GISTLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKNIGSFYDLIMKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I ++L LL G L +C++ G Q + S + GG +C +++M
Sbjct: 129 GEDAAIITQMVQLKLLNAYGVAPQLDRCLICGKVQGVFDYSMELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKIVA 196
>gi|224476674|ref|YP_002634280.1| putative recombination protein O [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254790738|sp|B9DNL2|RECO_STACT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|222421281|emb|CAL28095.1| putative recombination protein O [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 251
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 9/201 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-R 59
M + II+ YGE + I+ ++ + V+ + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNENGAKVPLMVKRAKKSKTGLQANTQLFVHGLFIY 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++L +V+ + L + + + + + E + +L LN
Sbjct: 61 AKLRGLGILNSIDVINQNYQLRLDIYDSSFAALCAEIIDKSMEDEEISNFNFKLLEFCLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSV-- 175
K + + + L + + GF +D KC ++ L+ S K G +
Sbjct: 121 RIKEKDSAQLMSIIVLLKKMPSFGFSIDFDKCSISEENDQSKLIAFSFKYHGVISEQYID 180
Query: 176 ----GLPYAEKMLVLPSFLWK 192
+ + K L L L K
Sbjct: 181 RDPHAINISNKTLYLMDILQK 201
>gi|329667245|gb|AEB93193.1| DNA repair protein [Lactobacillus johnsonii DPC 6026]
Length = 250
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +++ ++MT+ +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADVLTKIMTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + Y+++ L
Sbjct: 69 GISTLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKDIGSFYNLIMKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I ++L LL G L +C++ G Q + S + GG +C +++M
Sbjct: 129 GEDAAIITQMVQLKLLNAYGVAPQLDRCLICGKVQGVFDYSMELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKVVA 196
>gi|288800567|ref|ZP_06406025.1| DNA repair protein RecO [Prevotella sp. oral taxon 299 str. F0039]
gi|288332780|gb|EFC71260.1| DNA repair protein RecO [Prevotella sp. oral taxon 299 str. F0039]
Length = 241
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 9/186 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M AI+L Y + +I++++T Q GR VR G+ + Q L+ +
Sbjct: 1 MLTNTSAIVLHSFKYKDNQMIVDMLTEQLGRISFIVRVGKKGSSATKRQFFQPLTLLELA 60
Query: 58 WRSRLAQNLGEFRFEVL-ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L + + + L L+ L++ +
Sbjct: 61 FDYRENVGLQKLNDIKIAHPFNSIFFDPFKCSIALFVAEFLYHATKSEAQTALLHNYIEA 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLD----LTKCVVTGVTQDLLWVSPKSGGAV 171
L S + + L + IGF + C+ T SP +
Sbjct: 121 GLLWLDGCTSSFANFHLVFMIKLTRFIGFYPNTEGFNEGCIFNLRTGCFEEYSPIHADYL 180
Query: 172 CRSVGL 177
+ +
Sbjct: 181 TPTDSI 186
>gi|237720394|ref|ZP_04550875.1| DNA repair protein [Bacteroides sp. 2_2_4]
gi|293370458|ref|ZP_06617011.1| DNA repair protein RecO [Bacteroides ovatus SD CMC 3f]
gi|298480565|ref|ZP_06998762.1| DNA repair protein RecO [Bacteroides sp. D22]
gi|229450145|gb|EEO55936.1| DNA repair protein [Bacteroides sp. 2_2_4]
gi|292634450|gb|EFF52986.1| DNA repair protein RecO [Bacteroides ovatus SD CMC 3f]
gi|298273386|gb|EFI14950.1| DNA repair protein RecO [Bacteroides sp. D22]
Length = 242
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 121 SIIWLDECGDGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 171
>gi|294646220|ref|ZP_06723874.1| DNA repair protein RecO [Bacteroides ovatus SD CC 2a]
gi|294809113|ref|ZP_06767831.1| DNA repair protein RecO [Bacteroides xylanisolvens SD CC 1b]
gi|292638438|gb|EFF56802.1| DNA repair protein RecO [Bacteroides ovatus SD CC 2a]
gi|294443667|gb|EFG12416.1| DNA repair protein RecO [Bacteroides xylanisolvens SD CC 1b]
Length = 264
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + + +
Sbjct: 23 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIELE 82
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 83 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 142
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 143 SIIWLDECGDGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 193
>gi|160883900|ref|ZP_02064903.1| hypothetical protein BACOVA_01873 [Bacteroides ovatus ATCC 8483]
gi|260172415|ref|ZP_05758827.1| DNA repair protein [Bacteroides sp. D2]
gi|299147114|ref|ZP_07040181.1| DNA repair protein RecO [Bacteroides sp. 3_1_23]
gi|315920711|ref|ZP_07916951.1| DNA repair protein [Bacteroides sp. D2]
gi|156110630|gb|EDO12375.1| hypothetical protein BACOVA_01873 [Bacteroides ovatus ATCC 8483]
gi|298514999|gb|EFI38881.1| DNA repair protein RecO [Bacteroides sp. 3_1_23]
gi|313694586|gb|EFS31421.1| DNA repair protein [Bacteroides sp. D2]
Length = 242
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 121 SIIWLDECGEGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 171
>gi|197303355|ref|ZP_03168395.1| hypothetical protein RUMLAC_02078 [Ruminococcus lactaris ATCC
29176]
gi|197297639|gb|EDY32199.1| hypothetical protein RUMLAC_02078 [Ruminococcus lactaris ATCC
29176]
Length = 231
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 2/168 (1%)
Query: 16 GEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLE 75
GE + + ++T++ G+ F + + + + ++ + +
Sbjct: 2 GEYDRRVVLLTKEQGKVSAFAKGSRRPNSPLVGVVNPFTFGEFTMYEGRSSYTIQSAKVI 61
Query: 76 SHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KIPSVIGKIFVQ 133
++ ++L L YG + + E LE+ +L + I
Sbjct: 62 NYFSELREDVLGAYYGFYFLEVANYYAREFNDELEMLKLLYQTMRALTNPHIPDALIRCI 121
Query: 134 IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
EL +L G G + +CV G + S GG VC + +
Sbjct: 122 YELKILTINGQGPQVFQCVNCGNKAETAVFSAGRGGLVCETCAGEVRD 169
>gi|325954539|ref|YP_004238199.1| DNA repair protein recO [Weeksella virosa DSM 16922]
gi|323437157|gb|ADX67621.1| DNA repair protein recO [Weeksella virosa DSM 16922]
Length = 237
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 8/232 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG-QSHRMQPILQAGNLVRVNWR 59
M +L YG+ +IL + T+++G V N ++ + V V +R
Sbjct: 1 MDITTRGFVLSAVKYGDTRLILRIYTQEFGLRSFIVGNAFAKNKSAALYFPLASVEVFFR 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ L + ++ + + + + L E E LY L L
Sbjct: 61 LKNNSTLVNAKQLSAANYFHTIHVNPVKSTMVMFLAEVMQMVLKEEESNTLLYRYLEENL 120
Query: 119 NCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + L K +GF ++ + + +S +
Sbjct: 121 IRFDEREKNYADFHLWFLMQLTKFLGFFPNIEAMEQDYFDLENGVFTSESVHVEHLTQTQ 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHN-IIHCHLL 228
K L+ F K+ + + + L KY H
Sbjct: 181 TQLWKALLQLDFREKQSSAFNQSQRRELL----HLLMKYYQIHLPNFFQPKS 228
>gi|312135209|ref|YP_004002547.1| DNA repair protein reco [Caldicellulosiruptor owensensis OL]
gi|311775260|gb|ADQ04747.1| DNA repair protein RecO [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 3/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V+T +G+ +N + + + Q
Sbjct: 4 IKTKGIVLKETNFEESSKILTVLTSDFGKIQVLSKNCRRLLSVLSAVSQPLMFCEFV-IK 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V+ES + +L +Y I + FL + ++ +L L
Sbjct: 63 KTKDIYSISSASVIESFFELSQNVNLAIYSGYLIELVDDFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
K ++ E+ +L GF T+CV
Sbjct: 123 LKKGKDPEEVSRIFEIKILVYTGFFPQFTQCVKCQRKD 160
>gi|149277016|ref|ZP_01883158.1| possible DNA repair protein [Pedobacter sp. BAL39]
gi|149231893|gb|EDM37270.1| possible DNA repair protein [Pedobacter sp. BAL39]
Length = 241
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 5/151 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L Y E ++I+++ T + G + + + + +LQ +LV +
Sbjct: 1 MLHKTRGIVLKTTLYSESSVIVQIFTEKLGIQSYMINGVKKPKAKIHMNMLQPLHLVDMI 60
Query: 58 WRSR-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + L++ + ++ L+D +
Sbjct: 61 VYHKANTNIQRVSELRPSPVFRSIPYDIIKSTIAMFLNEVLYKSIRQQTTDEHLFDFIFS 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGL 146
+ + F L L + +GF
Sbjct: 121 AICWFDETNEQQHNFHLAFLLKLTRFLGFAP 151
>gi|187250605|ref|YP_001875087.1| DNA repair protein RecO [Elusimicrobium minutum Pei191]
gi|186970765|gb|ACC97750.1| DNA repair protein RecO [Elusimicrobium minutum Pei191]
Length = 232
Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 3/147 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSR 61
D+ I+L +++ E + ++ + T+ YGR + +++ + + +
Sbjct: 2 TDEGIVLIRQNFREADRMVSLYTKSYGRLNLRFPSVNKSAGKLKALSEPFVHANYRIYVK 61
Query: 62 LAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+G +ES ++ L +FR PE +P E + +L LN
Sbjct: 62 RGAVIGCVTGGKIESVFPQIRQDGPKTKMALHFCELMFRLTPEHQPSEEKFLLLQEALNS 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLD 147
+ + L L+ GFG+D
Sbjct: 122 LQKTDCNPSLSPAFILRLMTLAGFGMD 148
>gi|315224182|ref|ZP_07866022.1| recombination protein O [Capnocytophaga ochracea F0287]
gi|314945915|gb|EFS97924.1| recombination protein O [Capnocytophaga ochracea F0287]
Length = 238
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 5/155 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRV 56
MY + AI++ + ++I++ T+ G ++ + + + Q L+ +
Sbjct: 1 MYDKVRAIVISSLKCSDNSLIVKCFTQTMGTRSYLLQGVLAQKKGNLKTALFQPFMLLEL 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ LG + + + + + P E++ L
Sbjct: 61 VATHKNNGTLGRVKEAKIAVPYYSLHTDMYKSAVSMFLSEVCAFVCTSEAPDEEMFLFLE 120
Query: 116 IFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
L ++ L + + +GF D T
Sbjct: 121 QKLLFFDRNDFSANFHLKFLLDITRYLGFYPDTTH 155
>gi|295086260|emb|CBK67783.1| DNA replication and repair protein RecO [Bacteroides xylanisolvens
XB1A]
Length = 264
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 5/171 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 23 MLQKTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIEFE 82
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 83 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 142
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 143 SIIWLDECGDGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 193
>gi|256825022|ref|YP_003148982.1| DNA replication and repair protein RecO [Kytococcus sedentarius DSM
20547]
gi|256688415|gb|ACV06217.1| DNA replication and repair protein RecO [Kytococcus sedentarius DSM
20547]
Length = 279
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 7/206 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++D AI+L GE + I+ ++ Q G+ + + R + L+ +V V
Sbjct: 4 YRDAAIVLRTHPLGEADRIVTLLGHQRGKVRAVAKGVRRTRSRFGARLEPAMVVDVQCYE 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + A ++ + E E + + +L L+
Sbjct: 64 GRTLDTITQAEGLAAYGEAIARDYPRWVCSTVMCETADSLVDEGETSPQQFRLLAGALSA 123
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ + G+ + C G +GGAVC S
Sbjct: 124 LAVGQWPADL--LLDGYLLRAMAIAGWPMMARDCARCGAPGPHRAFHVAAGGAVCPSCRT 181
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLK 203
AE + D +++
Sbjct: 182 AGAEAPHPDSFTMLHALGESDWGTVR 207
>gi|227890108|ref|ZP_04007913.1| recombination protein O [Lactobacillus johnsonii ATCC 33200]
gi|227849552|gb|EEJ59638.1| recombination protein O [Lactobacillus johnsonii ATCC 33200]
Length = 250
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +++ ++MT+ +G R + + N +
Sbjct: 9 QGLIFKRKKYKEADVLTKIMTKDHGIFTIDARGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L +
Sbjct: 69 GISTLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKNIGSFYDLIMKALLKINL 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I ++L LL G L +C++ G Q + S + GG +C +++M
Sbjct: 129 GEDAAIITQMVQLKLLNAYGVAPQLDRCLICGKVQGVFDYSMELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKIVA 196
>gi|314936313|ref|ZP_07843660.1| DNA repair protein RecO [Staphylococcus hominis subsp. hominis C80]
gi|313654932|gb|EFS18677.1| DNA repair protein RecO [Staphylococcus hominis subsp. hominis C80]
Length = 249
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 9/201 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + VR + + V +
Sbjct: 1 MLEKQKGIIIKSVDYGESDKIITILNEHGAKIPIMVRRAKKSKTGLQAHTQLFVYGLFIY 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+V+ + L Y + + R L E L Y +L LN
Sbjct: 61 NKWKGMGTLSSIDVINQYYQLRLDIFDSSYATLCVEAIDRSLEPDEVSLYHYKLLEFVLN 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVC----- 172
+ + + + L + GF C +TG T L+ S K G +
Sbjct: 121 KISEGNSAQLMSIIVLLKCMNKFGFDAFFNYCAITGDTDQSKLIAYSFKYDGTISETVLN 180
Query: 173 -RSVGLPYAEKMLVLPSFLWK 192
L + K L L K
Sbjct: 181 NDPYALKLSNKTFYLLDILQK 201
>gi|222529400|ref|YP_002573282.1| DNA repair protein RecO [Caldicellulosiruptor bescii DSM 6725]
gi|254790507|sp|B9MS55|RECO_ANATD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|222456247|gb|ACM60509.1| DNA repair protein RecO [Caldicellulosiruptor bescii DSM 6725]
Length = 244
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 3/158 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
+ I+L ++ E + IL V+T +G+ +N + + Q R
Sbjct: 4 IKTKGIVLKETNFEESSKILTVLTSDFGKIQVLSKNCRRLLSVLSACSQPLMFCEFVIR- 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ V+ES +L +Y I + FL + ++ +L L
Sbjct: 63 KTKDIYSISSASVIESFFELSQDVNLAIYSGYLIELVDSFLEFEQKNEDVLRLLLNSLYL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
K + E+ +L GF L T+CV
Sbjct: 123 LKKGKDPEVVSRIFEIKILVYTGFFLQFTQCVKCQRKD 160
>gi|309790752|ref|ZP_07685300.1| DNA repair protein RecO [Oscillochloris trichoides DG6]
gi|308227202|gb|EFO80882.1| DNA repair protein RecO [Oscillochloris trichoides DG6]
Length = 251
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 2/154 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
++ +A+IL E + +L + T G+ + + + + +
Sbjct: 6 YRTEALILRRSDMAEADRLLLIATPN-GKVRVVAKGVRKISSRLAGHIELFTHASLLLAV 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL-ELYDMLNIFLNCH 121
+NL + L + L + L+ L E ++ +L
Sbjct: 65 GRNLDIVTQSQAINTFTTLRNDITRLSCAYYVADLYATLTEEGEENRPIFQLLVETFAAL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I EL LL+ G+ L C G
Sbjct: 125 DLSINPDLILRSFELRLLQIAGYRPHLHHCAQCG 158
>gi|330823893|ref|YP_004387196.1| DNA repair protein RecO [Alicycliphilus denitrificans K601]
gi|329309265|gb|AEB83680.1| DNA repair protein RecO [Alicycliphilus denitrificans K601]
Length = 257
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
+ A IL + E ++IL+V T YGR + + +P+L +R+ W
Sbjct: 6 IVDEPAYILHAYDWSESSLILDVFTCHYGRVALVAKGAKKPTSNFRPVLLPLQPLRLAWG 65
Query: 60 SRLAQNLGEFRFEV--LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
GE L + L GL L R L + +L+D+
Sbjct: 66 LAGEVGQGEIHTLKAAEWVGGHVLPTGDALLSGLYLNELLLRLLAREDTHAQLFDLY 122
>gi|304438433|ref|ZP_07398373.1| recombination protein O [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368516|gb|EFM22201.1| recombination protein O [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 243
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 1/200 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ + I+LG RS+GE + ++ + T+++G + R V + +
Sbjct: 3 IYGAEGIVLGTRSWGEADKVVTLYTKEHGLVRAAAFGCRRPRSPLAGAMQLFVHADLQLA 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L + + + ++ L + E + +
Sbjct: 63 EGTRLETVKTASVRASHHRIADDLAALAYATFTAEVVCAFMPEGVEDETFFDALAQIMTA 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLPYA 180
+ L L G C+ G GGA+C A
Sbjct: 123 FETRQPRVTALAAVLRTLDAAGLQQTYDHCLHCGTKISGDAVFHAAEGGALCADCAGEGA 182
Query: 181 EKMLVLPSFLWKEEQTIDAD 200
L E + ID
Sbjct: 183 MPFSAELRTLLTELRQIDWK 202
>gi|292669774|ref|ZP_06603200.1| DNA repair protein RecO [Selenomonas noxia ATCC 43541]
gi|292648571|gb|EFF66543.1| DNA repair protein RecO [Selenomonas noxia ATCC 43541]
Length = 243
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 3/198 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+ I+LG R++GE + I+ V TR+ G + R V + + + A+
Sbjct: 7 EGIVLGARNWGEADKIVTVFTRRQGILRAAAFGCRRPRSPLAGAMQMFVHADLQLAEGAR 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V + H L + Y + FLPE +D L L +
Sbjct: 67 LETVKTASVRDHHAKISLDLASLAYATFVAEVIREFLPEGVSDEAFFDRLVHILTAFETR 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV-TQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ + + +L G +C+ G + + + GGA+C A
Sbjct: 127 NPRVTALASV-VQILAAAGLQQSYERCIHCGKAIEGDAFFLAREGGALCADCRTEGAVLF 185
Query: 184 LVLPSFLWKEEQTIDADS 201
L QT+D +
Sbjct: 186 SAELRELLIGLQTLDWQN 203
>gi|6647944|sp|Q9ZD02|Y548_RICPR RecName: Full=Uncharacterized protein RP548
gi|3861097|emb|CAA14997.1| unknown [Rickettsia prowazekii]
Length = 115
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D +I+ + E I+ V T+ +G + G ++ S + + I Q GN+V W++
Sbjct: 1 MNIKDIGVIISKKPLKENTFIIRVFTKNHGLYSGVIK-ESSKKNKFIYQEGNIVDFLWKA 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
RL +++G + E+++S+ + + LY S++ L + L ++ ++
Sbjct: 60 RLHEHIGIAKCELIKSYTGYFIINKAKLYAFNSVISLIQELFHEREEHSIFFFISN 115
>gi|319763843|ref|YP_004127780.1| DNA repair protein reco [Alicycliphilus denitrificans BC]
gi|317118404|gb|ADV00893.1| DNA repair protein RecO [Alicycliphilus denitrificans BC]
Length = 257
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
+ A IL + E ++IL+V T YGR + + +P+L +R+ W
Sbjct: 6 IVDEPAYILHAYDWSESSLILDVFTCHYGRVALVAKGAKKPTSNFRPVLLPLQPLRLAWG 65
Query: 60 SRLAQNLGEFRFEV--LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
GE L + L GL L R L + +L+D+
Sbjct: 66 LAGEVGQGEIHTLKAAEWVGGHVLPTGDALLSGLYLNELLLRLLAREDTHAQLFDLY 122
>gi|167627663|ref|YP_001678163.1| DNA repair protein RecO [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254764632|sp|B0TYI6|RECO_FRAP2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|167597664|gb|ABZ87662.1| DNA repair protein RecO [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 233
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 14/233 (6%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLV--RVNWRSRLAQN 65
IL Y E ++++ + TR++G+ G +R + + + Q + +++ +
Sbjct: 8 YILHQCKYKENSLLVSIFTREFGKISGLIR--VNKKTINLYQPLVKLRGQISLAKKSDGL 65
Query: 66 LGEFRFEVLES-HCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ E +ES + ++ Y + I L + E E E Y + +N
Sbjct: 66 SKIYNVEFVESFYQNTYINLLSLQYMNELIYLLLSYSHEEEFLFEKYGFILKNINEINYK 125
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKML 184
+ EL LL ++G G+ + + + + L S + G +P +
Sbjct: 126 ----YLLRMFELELLDSLGQGVYVDCDIDGMLIDESLSYSILATGFKKNLSTIPNSIAGK 181
Query: 185 VLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
L + + + LK+ ++T +++ YAL R+ + L
Sbjct: 182 NLLK-INQSVSLWTDEDLKAISKVTRAYID-YALA---GKQLRSRKLLIDYLN 229
>gi|329964538|ref|ZP_08301592.1| DNA repair protein RecO [Bacteroides fluxus YIT 12057]
gi|328524938|gb|EGF51990.1| DNA repair protein RecO [Bacteroides fluxus YIT 12057]
Length = 242
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q LV +
Sbjct: 1 MLQKTSGIVLHTLKYKDTSIIVDIYTEVAGRASFVVSVPRSRKAAVKSVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L L L+R + E L+ L
Sbjct: 61 ADFRPTATIYKVKEAKSFYPFSTLPYDPYKSAIALFLSEFLYRAVREEAENRPLFAYLRH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + + L + +G +L
Sbjct: 121 SIIWLDECGTGFANFHLVFLMRLSRFLGLYPNLEDYHKGDYFD 163
>gi|17231667|ref|NP_488215.1| DNA repair protein RecO [Nostoc sp. PCC 7120]
gi|20139486|sp|Q8YPL9|RECO_ANASP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|17133310|dbj|BAB75874.1| alr4175 [Nostoc sp. PCC 7120]
Length = 296
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 8/160 (5%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN- 57
M ++ I L ++ GE + I+ ++T+++G + H ++ V
Sbjct: 1 MNKTYKATGINLKAQAMGESDRIVTILTQEFGLIRAIAPGSRKHNSSLGGRSAMFVVNEL 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++ + + ++++ + +P ELY++LN
Sbjct: 61 LIAKGRSLDKITQAQTIKTYPGLAKDLGKLAASQYLAEIVLCQALSEQPQEELYELLNEH 120
Query: 118 LNCHKIPSVIGKIFV-----QIELMLLKNIGFGLDLTKCV 152
L+ + V LL G + C
Sbjct: 121 LHRLEELPKGESFGVLAYLAHAVFHLLALAGLTPQVQICC 160
>gi|293400672|ref|ZP_06644817.1| DNA repair protein RecO [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305698|gb|EFE46942.1| DNA repair protein RecO [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 243
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 5/177 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M + + II+ + Y E + IL V+ R+ G R Q + P Q VR+
Sbjct: 1 MKDELEGIIIRYQEYREHDAILHVLCRKRGIVHVNARGIQKVKSKNAPACQLFTHVRMQL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +++ R + + L + ++++++ L
Sbjct: 61 PLQETRSIYTLRSAEIIEGYRHIREDLLKQSIAAYVCECIDASKFE---EDVFEVVQTVL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + +I + ++ + G + CV G + + +S + GG +C S
Sbjct: 118 DILQETTHPIRILCLFQAIMNRMHGIEPYVDGCVRCGNQKAIYAISIRDGGFICHSC 174
>gi|116629755|ref|YP_814927.1| recombinational DNA repair protein (RecF pathway) [Lactobacillus
gasseri ATCC 33323]
gi|311110603|ref|ZP_07712000.1| DNA repair protein RecO [Lactobacillus gasseri MV-22]
gi|122273307|sp|Q042Y3|RECO_LACGA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116095337|gb|ABJ60489.1| DNA replication and repair protein RecO [Lactobacillus gasseri ATCC
33323]
gi|311065757|gb|EFQ46097.1| DNA repair protein RecO [Lactobacillus gasseri MV-22]
Length = 250
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +I+ ++MT+ +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADILTKIMTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L
Sbjct: 69 GISSLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKDIGSFYDLIMKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I ++L LL G L +C++ G Q S + GG +C +++M
Sbjct: 129 GEDVAVITQMVQLKLLNAYGVAPQLDRCLICGKVQGTFDYSLELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKVVA 196
>gi|184200938|ref|YP_001855145.1| DNA repair protein RecO [Kocuria rhizophila DC2201]
gi|183581168|dbj|BAG29639.1| DNA repair protein RecO [Kocuria rhizophila DC2201]
Length = 252
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 6/208 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS 60
++DDA++L + GE + I+ +++ Q+G+ + + R L+ N+ V
Sbjct: 11 YRDDAVVLRTYTLGEADRIVILLSAQHGQVRAVAKGVRRTTSRFGARLEPFNVAEVQLVH 70
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + F R + + L
Sbjct: 71 GRSLDIVSQAIGKRSYGERIVSDYERFTAAAAMAETAERLTADDHDTAAQHYRLL-VGAL 129
Query: 121 HKIPSVIGKIFVQIELMLLK---NIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + ++ LL+ G+ C G S GGAVC
Sbjct: 130 SATARGLHRPGRILDSYLLRAVSLAGWTPSFVDCARCGAPGPHRSFSAPLGGAVCPQCRP 189
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSA 205
P + L D ++ +A
Sbjct: 190 PGSAAPSDATFVLLNGLLHGDWPTIDAA 217
>gi|291544278|emb|CBL17387.1| DNA repair protein RecO [Ruminococcus sp. 18P13]
Length = 252
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 5/191 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M I++ RS GE++ ++++T G VR + R Q +
Sbjct: 1 MLTTVTGIVIRERSVGEQDKFIDLLTADQGVLEVSVRGAKKITSRHGAASQLYAYGQYCL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
SR + +V + + + ++ +L L
Sbjct: 61 DSRRDRYY-LNSAQVERIFYDLRQDLTRLSLATYFSELIGFAVGAEHAKSDILRLLLNTL 119
Query: 119 NCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD-LLWVSPKSGGAVCRSVG 176
+ + + + EL L +G D+ C V G L ++G +C
Sbjct: 120 HYLEEGSRPVPLLKALFELRFLTELGMMPDIVCCDVCGEYAPAQLIFRLQAGNFICAHCA 179
Query: 177 LPYAEKMLVLP 187
A +P
Sbjct: 180 GEIAPDREQMP 190
>gi|206602233|gb|EDZ38715.1| Recombination protein O (RecO) [Leptospirillum sp. Group II '5-way
CG']
Length = 246
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 6/175 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRLAQ 64
A++L Y E + ++ +R+ G GF R S+R L+ L R+ R L
Sbjct: 5 ALVLRSVRYLESDKVVTFFSREEGVLTGFARGAAGMSNRFGASLEPLTLSRILGRFHLEG 64
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQS-IVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
L + + + + S Y I L LP P ++D+ +L
Sbjct: 65 TLYRIHKASIVNPFSSIKSDLDRCYWAGMGIRLLLGLLPAALPEPPVFDIAVNYLELLSA 124
Query: 124 PSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSV 175
+ + L +G+ + C + L+ P G +C
Sbjct: 125 QEISPAFSWLRFAASALDLLGYQIRADDCSFCKEAPFGNSLFYYPMDGRVLCSRC 179
>gi|212692801|ref|ZP_03300929.1| hypothetical protein BACDOR_02300 [Bacteroides dorei DSM 17855]
gi|237709489|ref|ZP_04539970.1| DNA repair protein [Bacteroides sp. 9_1_42FAA]
gi|237724915|ref|ZP_04555396.1| DNA repair protein [Bacteroides sp. D4]
gi|265754696|ref|ZP_06089748.1| DNA repair protein RecO [Bacteroides sp. 3_1_33FAA]
gi|212664590|gb|EEB25162.1| hypothetical protein BACDOR_02300 [Bacteroides dorei DSM 17855]
gi|229436653|gb|EEO46730.1| DNA repair protein [Bacteroides dorei 5_1_36/D4]
gi|229456545|gb|EEO62266.1| DNA repair protein [Bacteroides sp. 9_1_42FAA]
gi|263234810|gb|EEZ20378.1| DNA repair protein RecO [Bacteroides sp. 3_1_33FAA]
Length = 241
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L Y + + I+++ TR+ GR V +S + + Q +++
Sbjct: 1 MLQKTVGIVLHTLKYNDTSNIVDIYTRENGRASFLVSVPRSRKSAVKTVLFQPLSMIEFE 60
Query: 58 WRSRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + L+R L E L+ L
Sbjct: 61 ADYRPMSNLYRIKEAKSWHPFRTLPYDPYKSSIAMFLAEFLYRALREEAENGPLFAYLEH 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + + +G +
Sbjct: 121 SIRWLDECDRSFSNFHLVFLMRFSRFLGLYPNTEDY 156
>gi|282851788|ref|ZP_06261151.1| DNA repair protein RecO [Lactobacillus gasseri 224-1]
gi|282557030|gb|EFB62629.1| DNA repair protein RecO [Lactobacillus gasseri 224-1]
Length = 250
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--A 63
+I + Y E +I+ +MT+ +G VR + + N +
Sbjct: 9 QGLIFKRKKYKEADILTNIMTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWK 68
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F+ ++ L + Y + L E + YD++ L
Sbjct: 69 GISSLRTFKDVKQLDQLYLDLTKNAYSSYVLDLLDHAFVEYKDIGSFYDLIMKALLKINS 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ I ++L LL G L +C++ G Q S + GG +C +++M
Sbjct: 129 GEDVAVITQMVQLKLLNAYGVAPQLDRCLICGKVQGTFDYSLELGGIICSDHFNSVSQRM 188
Query: 184 LVLPSFLW 191
+ P +
Sbjct: 189 HLDPKVVA 196
>gi|258508544|ref|YP_003171295.1| DNA repair protein recO [Lactobacillus rhamnosus GG]
gi|257148471|emb|CAR87444.1| DNA repair protein recO [Lactobacillus rhamnosus GG]
Length = 259
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 4/197 (2%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLAQNLGE 68
++Y E +++++++T Q+G+ + V + ++ R +
Sbjct: 2 SRQNYRESDMLVKILTDQFGKKMFLVNRARKPGFTLAAGILPFTHADYIGEVRDSGLSYL 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG 128
+ + +L Y L P+ P + + L+
Sbjct: 62 SAIKNPTQYRQISNDITLNAYAAYIFGLLDLAFPDGRPVGFWFKQVKQALHLIDTGLDPQ 121
Query: 129 KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
I +E+ +LK G + CV+ G T L S GG +C+ ++ P
Sbjct: 122 IIANVVEVQMLKAYGVEPNWRGCVIDGRTDLPLDFSESYGGLLCQQHWDKDPHRLHASPR 181
Query: 189 --FLWKEEQTIDADSLK 203
F + T+D +K
Sbjct: 182 AIFYLRRFSTLDLSQVK 198
>gi|237716663|ref|ZP_04547144.1| DNA repair protein [Bacteroides sp. D1]
gi|229442646|gb|EEO48437.1| DNA repair protein [Bacteroides sp. D1]
Length = 241
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 6/171 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + + +
Sbjct: 1 MQ-KTKGIVLHTLKYNDTSIIVDMYTELSGRASFLVTVPRSRKAAVKSVLFQPLSFIELE 59
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 60 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSSMALFLSEFLYRAIREEAENRPLFAYLQH 119
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + + L + +G +L L
Sbjct: 120 SIIWLDECGDGFANFHLVFLMRLSRFLGLYPNLEDYHTGDYFDLLNACFTS 170
>gi|113477991|ref|YP_724052.1| DNA repair protein RecO [Trichodesmium erythraeum IMS101]
gi|119361497|sp|Q10VZ5|RECO_TRIEI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|110169039|gb|ABG53579.1| DNA replication and repair protein RecO [Trichodesmium erythraeum
IMS101]
Length = 288
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 55/188 (29%), Gaps = 10/188 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSR 61
++ I L + GE + +L ++T +YG + + + +V S+
Sbjct: 5 YKATGINLKAMALGESDRLLTILTPEYGLIRVVAPGVRKQKSKLGGRGELFVVNQLLISK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E + S+ + G + + + P EL+ +LN L
Sbjct: 65 GRSLDRINQAETITSYTGLSQNLGKLAAGQYLAELVQQIALKENPQTELFHLLNEHLERI 124
Query: 122 KIPSVIGKIFVQIE---------LMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + LL G + +C TG + + K
Sbjct: 125 EQLQHKTDRLWSTQLIAFLAHGIYHLLAIEGIAPQVHQCCATGNELQPDFNNSKWQVGFS 184
Query: 173 RSVGLPYA 180
G
Sbjct: 185 IDAGGIIK 192
>gi|46580308|ref|YP_011116.1| DNA repair protein RecO [Desulfovibrio vulgaris str. Hildenborough]
gi|120602310|ref|YP_966710.1| DNA repair protein RecO [Desulfovibrio vulgaris DP4]
gi|81566609|sp|Q72AU1|RECO_DESVH RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254790555|sp|A1VCW7|RECO_DESVV RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|46449725|gb|AAS96375.1| DNA repair protein RecO, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562539|gb|ABM28283.1| DNA replication and repair protein RecO [Desulfovibrio vulgaris
DP4]
gi|311233709|gb|ADP86563.1| DNA repair protein RecO [Desulfovibrio vulgaris RCH1]
Length = 251
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 4/163 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + D A++L V + E ++ + + RQ G F G R + L N+V +
Sbjct: 1 MDFTDQALVLRVGRFREADLWVRFLCRQRGIISAFAFGGCRSRRRFCGCLDIFNVVLMRV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL--PEREPCLELYDMLNI 116
+ + L +L + + L L +
Sbjct: 61 QGTRGGLYQSLQEATLLKGPDRLRRDWRRYGVAVNCLRFIEALGAGPDGADSAFTLTLEM 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ V + + G+ C G D
Sbjct: 121 LELLETVDVVPPLLPLLFRARFAFEQGYAPRFESCASCGEPFD 163
>gi|317153440|ref|YP_004121488.1| DNA repair protein RecO [Desulfovibrio aespoeensis Aspo-2]
gi|316943691|gb|ADU62742.1| DNA repair protein RecO [Desulfovibrio aespoeensis Aspo-2]
Length = 252
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L V + E + +++ T G F G R + L +LV +
Sbjct: 1 MNATEKALVLKVGCFRESDCWVKLFTPSRGIFNAFAFGGARSRRRFVGCLDPLSLVLFSI 60
Query: 59 RS-RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
S R +L + + I + + ++D+L
Sbjct: 61 GSDRRGSYAVLSEGSLLHNFSGIRADAVATGLAANCIRFVEAVDIDPSDAAPVHDLLLKT 120
Query: 118 LNCHKIPSVIG-KIFVQIELMLLKNIGFGLDLTKCVVTG 155
L + +G+ D T C G
Sbjct: 121 LYMLDAGHGSADFVPWFFRARFAFEMGYNPDFTACGTCG 159
>gi|225570968|ref|ZP_03779991.1| hypothetical protein CLOHYLEM_07072 [Clostridium hylemonae DSM
15053]
gi|225160430|gb|EEG73049.1| hypothetical protein CLOHYLEM_07072 [Clostridium hylemonae DSM
15053]
Length = 239
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 2/169 (1%)
Query: 9 ILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGE 68
+L GE + + ++T++ G+ F R + + + +
Sbjct: 2 VLHASPIGEYDRRVVILTKERGKISAFARGARKPHSALVGVTSPFTFGEFTVYEGRTSYT 61
Query: 69 FRFEVLESHCA-KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ ++ + + YG + + E L +L L P +
Sbjct: 62 LVSASVSNYFSELRVDVEGAYYGFYFLDFAGYYARENSDETLLLKLLYQTLRALTNPHLD 121
Query: 128 GKI-FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
++ EL + G + +CV + S GG VC
Sbjct: 122 NRLVRYIFELKAVAVNGEAPQVFECVRCADKERPAVFSVSKGGLVCSEC 170
>gi|239814411|ref|YP_002943321.1| DNA repair protein RecO [Variovorax paradoxus S110]
gi|259563686|sp|C5CSF7|RECO_VARPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|239800988|gb|ACS18055.1| DNA repair protein RecO [Variovorax paradoxus S110]
Length = 257
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 1/122 (0%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ A +L + E ++ILEV TR +GR + + ++ +
Sbjct: 9 HEPAYVLHRYDWSESSLILEVFTRHHGRIALVAKGAKRP-SSNFRPVLLPLQPLQLNYGG 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ + L G L R L + L+D +
Sbjct: 68 DAEIRTLKGAEWMGGHVMPTGEALLSGYYVNELLLRLLARDDAHEALFDAYAGVVQVLAG 127
Query: 124 PS 125
Sbjct: 128 DH 129
>gi|332706215|ref|ZP_08426284.1| DNA replication and repair protein RecO [Lyngbya majuscula 3L]
gi|332355052|gb|EGJ34523.1| DNA replication and repair protein RecO [Lyngbya majuscula 3L]
Length = 321
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ I L GE + ++ ++TR+ G + + + ++G V ++
Sbjct: 5 YKATGINLKSIPLGEADRLVTILTRELGLIRVVAPGARKQKSKLGGRSGLFVVNQLLLAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E ES+ S + +P ELY++LN L
Sbjct: 65 GRSLDKIIQAETTESYPGLSQELSKLAASQYLAELVLCHALSEQPQEELYELLNEHLRRL 124
Query: 122 KIPSVI----------GKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ I LL G + C +T T
Sbjct: 125 EQLPKITANPSGLSLVLAHLSHGVFHLLALAGIAPQVQLCCITQHT 170
>gi|50085653|ref|YP_047163.1| DNA repair protein [Acinetobacter sp. ADP1]
gi|49531629|emb|CAG69341.1| DNA repair protein [Acinetobacter sp. ADP1]
Length = 236
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 27/241 (11%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T +YGR G +R + +
Sbjct: 7 HGYLIHHRRYREKSHIVHLFTEEYGRIDGILRQ----------IPPPQYQPITLQATGKG 56
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ ++ + F G L R P E + + I L ++ +
Sbjct: 57 ELKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLN 116
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA---VCRSV 175
+I Q E +LL+ +G+ +D L + V +
Sbjct: 117 QHQQPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPVSQQS 176
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLG 234
L + +++ ++ QL L + + + R+ ++
Sbjct: 177 HLTVSGQLICCMQNYQAGQEFSTEQ-----LQLLGK-LYRQMITSLLGDRPLKSRQLWIQ 230
Query: 235 K 235
Sbjct: 231 N 231
>gi|332703854|ref|ZP_08423942.1| DNA repair protein recO [Desulfovibrio africanus str. Walvis Bay]
gi|332554003|gb|EGJ51047.1| DNA repair protein recO [Desulfovibrio africanus str. Walvis Bay]
Length = 248
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 4/161 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + +IL V + E + + ++T G F G R + L V +++
Sbjct: 1 MEFTEHGLILKVGRFREYDQWVRLLTPTRGILTAFAFGGSRSRRRFCGCLDALNLVLFKA 60
Query: 61 RLAQNLGEFRFEV---LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R ++N+ + E L + + I L F + +YD+
Sbjct: 61 RSSRNMAYLQLEESTLLSGYPRLKANLPKLGMAANCIKFLQAFQLGVDTSRAVYDLTLAT 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVT 157
L + + GF D C + G
Sbjct: 121 LEALDDGGEDQDFWPLFFRAAVAFESGFAPDFKSCHLCGKN 161
>gi|189462929|ref|ZP_03011714.1| hypothetical protein BACCOP_03630 [Bacteroides coprocola DSM 17136]
gi|189430356|gb|EDU99340.1| hypothetical protein BACCOP_03630 [Bacteroides coprocola DSM 17136]
Length = 240
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 5/173 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y +K I+ V T Q GR + +S + Q + Q ++V
Sbjct: 1 MLQKYVGIVLHTVKYSDKANIVHVYTEQSGRMSFLIPAQRSRKSAVKQVLFQPLSVVEFE 60
Query: 58 WRSRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L+R L E + L+ L
Sbjct: 61 ADMRPRSGIHPIKEAKAWYVFTSLPYDPYKSAIAMFLAEFLYRALKEETTNIPLFAYLVH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG 168
+ + + + L + +G ++ + + L S
Sbjct: 121 SVQWLDVCETSFANFHLVFLMRLSRFLGLYPNVEEYSSSDYFDLLNACFVSSQ 173
>gi|167957341|ref|ZP_02544415.1| DNA repair protein RecO [candidate division TM7 single-cell isolate
TM7c]
Length = 225
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
AI+L +Y E + +L+++T + GR + + R + + R +
Sbjct: 8 KAIVLRRTNYAEADRVLQLLTPK-GRRSVIAKGVRRERSKLAGGIELFAICDMVIRSGRG 66
Query: 66 L-GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
G L + +L + + + L E E Y +L+ L P
Sbjct: 67 DLGLLTSARLAAFYRHILEDYERMQFAYAAMKLVSTASENIDEPEWYFVLSQVLEQLNNP 126
Query: 125 SVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
V K I + +G L+L V S
Sbjct: 127 VVNQKLIETWFYVQYASLLGDELNLRTDVTAQALVPDKKYMYDSAEK 173
>gi|116491020|ref|YP_810564.1| DNA replication and repair protein RecO [Oenococcus oeni PSU-1]
gi|290890501|ref|ZP_06553576.1| hypothetical protein AWRIB429_0966 [Oenococcus oeni AWRIB429]
gi|122276798|sp|Q04F73|RECO_OENOB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|116091745|gb|ABJ56899.1| DNA replication and repair protein RecO [Oenococcus oeni PSU-1]
gi|290479897|gb|EFD88546.1| hypothetical protein AWRIB429_0966 [Oenococcus oeni AWRIB429]
Length = 258
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 3/193 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + I++ VR Y E + ++++++ G + R + + + ++
Sbjct: 1 MVDKISGIVISVRDYSENDSLIKIISPTIGINTYLARGSKKTKSSLKIATQLFTYGDFFG 60
Query: 61 RLAQNLGEFRFEVLESHC---AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + G ES L L Y L E + Y M
Sbjct: 61 KYPKKNGLGYLNSSESTSIFKNISLDIILNAYASHIAELLAAAFDENTNIDQWYFMFFQA 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L I E+ LL G +L + G T+ S + G + +
Sbjct: 121 LKKIDAGLDPQVIANVFEIQLLSVFGVEPNLFSDPINGQTEGEFDFSEQYNGILSKKNYH 180
Query: 178 PYAEKMLVLPSFL 190
++ P +
Sbjct: 181 LDDRRLHANPKAI 193
>gi|160900691|ref|YP_001566273.1| DNA repair protein RecO [Delftia acidovorans SPH-1]
gi|238687166|sp|A9BNJ3|RECO_DELAS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|160366275|gb|ABX37888.1| DNA repair protein RecO [Delftia acidovorans SPH-1]
Length = 256
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+ A +L + E ++ILEV TR GR + + +P+L + +++
Sbjct: 9 DEPAYVLHSYDWSESSLILEVFTRHRGRVALAAKGVKRPTSNFRPVLLPLQPLSLSYSLG 68
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
N + + + GL L R L +P L+D+ +
Sbjct: 69 GEGNAEIHTLKGAEWVGGHVMPQGDALMSGLYLNELLMRLLARDDPYAALFDIYAGVVRV 128
Query: 121 HKIPS 125
Sbjct: 129 LAGQH 133
>gi|186684466|ref|YP_001867662.1| DNA repair protein RecO [Nostoc punctiforme PCC 73102]
gi|238691195|sp|B2ITL1|RECO_NOSP7 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|186466918|gb|ACC82719.1| DNA repair protein RecO [Nostoc punctiforme PCC 73102]
Length = 300
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 6/159 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ I L + GE + I+ ++T ++G + H ++G V ++
Sbjct: 5 YKASGINLKTQVLGESDKIVTILTPEFGLIRAVAPGARKHNSSLGGRSGMFVVNELLIAK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L+++ + +P ELY++ N L+
Sbjct: 65 GRSLDKITQAQTLKTYPGLAKDLGKLAASQYLAEIVLSQALSEQPQEELYELFNEHLHRL 124
Query: 122 KIPSVIGKIFVQIE-----LMLLKNIGFGLDLTKCVVTG 155
+ S V LL G + C ++G
Sbjct: 125 EALSNANASGVLAHLAHGVFHLLALAGVTPQVQICCLSG 163
>gi|284036117|ref|YP_003386047.1| DNA repair protein RecO [Spirosoma linguale DSM 74]
gi|283815410|gb|ADB37248.1| DNA repair protein RecO [Spirosoma linguale DSM 74]
Length = 230
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF---VRNGQSHRMQ-PILQAGNLVRV 56
M + I L Y E +II V T ++G VR +S + + Q L+ +
Sbjct: 1 MLQKTRGIALSYIRYRETSIIARVYTEEFGLQSYIINSVRTARSKNNKIALFQPLTLLEM 60
Query: 57 NWRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ ++L + + L + L E L+ L
Sbjct: 61 VVYYKSDRDLTRLSEVKTNYPFQSLPFEVGKSTIAMFVTEMLNKVLKEEAGSPVLFRFLV 120
Query: 116 IFLNCHKI-PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ + + + L L +GFG + + + ++
Sbjct: 121 ESVVFLEEATTNYENFHLAFLLKLSSFLGFGPESAREFEDQLREN 165
>gi|1001446|dbj|BAA10070.1| slr0181 [Synechocystis sp. PCC 6803]
Length = 260
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 50/174 (28%), Gaps = 6/174 (3%)
Query: 15 YGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFE 72
+GE + ++ + + +YG + + + + + + + + +
Sbjct: 6 FGESDRLVTIFSPEYGLIRAIAPGARKPKSSLRGRTELFVVNQFLLFAGKSLDRINQAET 65
Query: 73 VLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFV 132
S+ + G I + E LY++ L + + + I+
Sbjct: 66 Q-YSYPGLGQNVCNLAAGQYLIELILALGTEASAQTSLYELFTEHLRRLETEATVENIYG 124
Query: 133 QIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
+ L + G C +T T + + +G +
Sbjct: 125 HLAQALFHCLGAEGIAPQFHHCAITAQTISPNFYDRQWRVGFSPELGGIVDLRS 178
>gi|254880796|ref|ZP_05253506.1| DNA repair protein [Bacteroides sp. 4_3_47FAA]
gi|294775121|ref|ZP_06740650.1| DNA repair protein RecO [Bacteroides vulgatus PC510]
gi|319639806|ref|ZP_07994536.1| DNA repair protein [Bacteroides sp. 3_1_40A]
gi|254833589|gb|EET13898.1| DNA repair protein [Bacteroides sp. 4_3_47FAA]
gi|294451165|gb|EFG19636.1| DNA repair protein RecO [Bacteroides vulgatus PC510]
gi|317388623|gb|EFV69472.1| DNA repair protein [Bacteroides sp. 3_1_40A]
Length = 241
Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L Y + + I+++ TR+ GR V +S + + Q +++
Sbjct: 1 MLQKTVGIVLHTLKYNDTSNIVDIYTRENGRASFLVSVPRSRKSAVKTVLFQPLSMIEFE 60
Query: 58 WRSRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + L+R L E L+ L
Sbjct: 61 ADYRPMSNLYRIKEAKSWYPFRTLPYDPYKSSIAMFLAEFLYRALREEAENGPLFAYLEH 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + + +G +
Sbjct: 121 SIRWLDECDRSFSNFHLVFLMRFSRFLGLYPNTEDY 156
>gi|323697786|ref|ZP_08109698.1| DNA repair protein RecO [Desulfovibrio sp. ND132]
gi|323457718|gb|EGB13583.1| DNA repair protein RecO [Desulfovibrio desulfuricans ND132]
Length = 252
Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 43/159 (27%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + A++L + E ++ + ++T G GF G R + L + V
Sbjct: 1 MSATEKALVLKTGRFREADVWVRLLTPSRGIFNGFAFGGSRSRRRFVGCLDPLSHVLFTI 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNI 116
+ L + ++ + V + +L
Sbjct: 61 GTNKTGAYTVLEEGTLLHNFPEVRKDPARTGLAVNCVKFVEAVEIDPSDAKPAYDLLLET 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
L ++GF D +C V G
Sbjct: 121 LHMLEAGGGSSDFTPWLFRARLAFDLGFTPDFLRCGVCG 159
>gi|323343847|ref|ZP_08084074.1| recombination protein O [Prevotella oralis ATCC 33269]
gi|323095666|gb|EFZ38240.1| recombination protein O [Prevotella oralis ATCC 33269]
Length = 242
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + AI+ +G+ +I+++ T GR + ++ + + Q+ ++ +
Sbjct: 1 MLIKTKAIVFHSLKFGDAQLIVDLFTEACGRVSFIQQISKNPKAKIKKQFFQSLTILEIE 60
Query: 58 WRSRLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ R L + +E L L+ + L+ +
Sbjct: 61 FDFRQNAKLQRLKNARIETPFSNIPFDPYKLTILLFLADFLYYSTRSEQQNEPLFRYIEA 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQ 158
+ F + L K IGF +L
Sbjct: 121 SIKWLDASQGNIANFHLVFMMRLSKFIGFFPNLDNHDHNIYFD 163
>gi|319400902|gb|EFV89121.1| DNA repair protein RecO [Staphylococcus epidermidis FRI909]
Length = 253
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 9/199 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDRIITILNEYGAKIPLMARRAKKVKSGFQANTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y + R + E E YD+L L+
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLFESSYASLCAETIDRSMEENEVSKYNYDLLQFVLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVC----- 172
+ + V + L + GF C +TG+ L+ S K GA+
Sbjct: 121 KINEGTPAQLMSVIVLLKSMSKFGFTASFDHCAITGIQDQSKLIAYSFKYDGAISESALY 180
Query: 173 -RSVGLPYAEKMLVLPSFL 190
+ + L L + L
Sbjct: 181 QDQHAFQLSNRTLYLLNIL 199
>gi|242242838|ref|ZP_04797283.1| recombination protein RecO [Staphylococcus epidermidis W23144]
gi|242233739|gb|EES36051.1| recombination protein RecO [Staphylococcus epidermidis W23144]
Length = 253
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 9/199 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGFQANTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y + R + E E YD+L L+
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLFESSYASLCAETIDRSMEENEVSKYNYDLLQFVLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVC----- 172
+ + V + L + GF C +TG+ L+ S K GA+
Sbjct: 121 KINEGTPAQLMSVIVLLKSMSKFGFTASFDHCAITGIQDQSKLIAYSFKYDGAISESALY 180
Query: 173 -RSVGLPYAEKMLVLPSFL 190
+ + L L + L
Sbjct: 181 QDQHAFQLSNRTLYLLNIL 199
>gi|332638282|ref|ZP_08417145.1| DNA replication and repair protein RecO [Weissella cibaria KACC
11862]
Length = 264
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 4/201 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
DAI++ + EK+++++++T+Q G+ + +++NG+S R Q L + L
Sbjct: 6 DAIVMYQQDRKEKDLMVKMLTKQGGKRMFYIKNGKSKRYQFAADVQPLTVATFEGTLNPT 65
Query: 66 LGEFRFEVLESHCA--KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
F V ESH + ++ + Y + + + +P + Y+ + + +
Sbjct: 66 GLSFINAVKESHQSRELMMDVTKNAYMTYILGLIDAAFVDNQPIGKWYEWARLAIEKIER 125
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I E+ LL G +CVV G L S K G +C+ ++M
Sbjct: 126 GLDPQGIANFFEIKLLPAFGLEPTWGECVVCGRRDLPLDFSEKLNGTLCQLHWDQDEQRM 185
Query: 184 LVLPS--FLWKEEQTIDADSL 202
P + + ID L
Sbjct: 186 NANPRSVRVLSQLNKIDLKQL 206
>gi|167749634|ref|ZP_02421761.1| hypothetical protein EUBSIR_00592 [Eubacterium siraeum DSM 15702]
gi|167657387|gb|EDS01517.1| hypothetical protein EUBSIR_00592 [Eubacterium siraeum DSM 15702]
Length = 254
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 2/153 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M +++G R GE + L++ T + G + + A +
Sbjct: 1 MLITLKGLVIGQRIIGENSCFLDLFTDKLGMIEVMAHGAKKIGGKNSGAASLFSYATFCV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFL 118
SR ++ E + S + E +L +
Sbjct: 61 SRSSKGYTLNSAEPICSFYNISADIEALSLAAYFADIIKYCATSEEEHEDLLRFTCMTYF 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
K + I E L IGF DL C
Sbjct: 121 QLEKQKLPLRFIKAIFEFRFLSRIGFMPDLRAC 153
>gi|313896076|ref|ZP_07829630.1| DNA repair protein RecO [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975501|gb|EFR40962.1| DNA repair protein RecO [Selenomonas sp. oral taxon 137 str. F0430]
Length = 242
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 3/202 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + IILG +++GE + ++ V TR+ G + R V +++
Sbjct: 1 MLYTAEGIILGAKNWGEADKVMTVFTRERGMLRAAAFGCRRPRSALAGAMQMFVHADFQL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLL-SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
L + V+ +H AKL + Y + FLPE P + +D L L
Sbjct: 61 AEGPRLETVKTAVVRAHHAKLSADLTALAYATFVAEVVREFLPEGVPDEQFFDRLAEILT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG-VTQDLLWVSPKSGGAVCRSVGLP 178
+ + + +L G +C+ G + GGA+C S
Sbjct: 121 AFERRNPRVAALAAVLQ-ILSAAGLRQTYERCLHCGTEITGDAFFHAGEGGALCPSCRTA 179
Query: 179 YAEKMLVLPSFLWKEEQTIDAD 200
A L ++
Sbjct: 180 DAADFPAELRELLTGLSALNWA 201
>gi|242373871|ref|ZP_04819445.1| recombination protein RecO [Staphylococcus epidermidis M23864:W1]
gi|242348425|gb|EES40027.1| recombination protein RecO [Staphylococcus epidermidis M23864:W1]
Length = 253
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 10/209 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGLQAHTQMFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y + R + E E Y++L+ L
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLYESSYASLCAETIERSMEENEVSKYNYELLHFVLT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ + + + L + GF +CV+TG L+ S K GA+ + V
Sbjct: 121 KISEGTSAQLMSIVVLLKCMAKFGFTASFNRCVITGNDDQSKLMGYSFKFDGAISQEVA- 179
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAF 206
P L +++ +
Sbjct: 180 ------YQDPHALKLTNRSLYLLDILQKL 202
>gi|289750962|ref|ZP_06510340.1| DNA repair protein recO [Mycobacterium tuberculosis T92]
gi|289691549|gb|EFD58978.1| DNA repair protein recO [Mycobacterium tuberculosis T92]
Length = 148
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 33 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIEVQ 92
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFL 88
++ V +
Sbjct: 93 LHPGRNLDIVTQVVSVDAFATDIVADYGPLH 123
>gi|215427738|ref|ZP_03425657.1| DNA repair protein RecO [Mycobacterium tuberculosis T92]
Length = 124
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 1 MY-WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVN 57
M ++D A++L GE + I+ ++TR +G + + + L+ + V
Sbjct: 9 MRLYRDRAVVLRQHKLGEADRIVTLLTRDHGLVRAVAKGVRRTRSKFGARLEPFAHIEVQ 68
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFL 88
++ V +
Sbjct: 69 LHPGRNLDIVTQVVSVDAFATDIVADYGPLH 99
>gi|254411982|ref|ZP_05025757.1| DNA repair protein RecO [Microcoleus chthonoplastes PCC 7420]
gi|196180948|gb|EDX75937.1| DNA repair protein RecO [Microcoleus chthonoplastes PCC 7420]
Length = 289
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 49/188 (26%), Gaps = 11/188 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+ I L GE + ++ ++T ++G + + + G V +
Sbjct: 5 YNATGINLKSMPLGEADRLVTILTPEWGLIRVVAPGSRKQNSKLAGRMGLFVVNQLLIYK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E LES+ + +P ELY + N L
Sbjct: 65 GRSLDKITQAETLESYPGLAKDLGKLAASQYLAELVLCHALSEQPQAELYALFNEHLRRL 124
Query: 122 KIPSVIGKIF----------VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAV 171
+ + Q LL G + +C ++ +
Sbjct: 125 EQLPPLSSSHSGTSLLLAHLCQGIFHLLALAGIAPQVQQCCISQHPIQPDFTDQNWQVGF 184
Query: 172 CRSVGLPY 179
G Y
Sbjct: 185 SVEAGGTY 192
>gi|291557708|emb|CBL34825.1| DNA repair protein RecO [Eubacterium siraeum V10Sc8a]
Length = 254
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 2/153 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M +++G R GE + L++ T + G + + A +
Sbjct: 1 MLITLKGLVIGQRIIGENSCFLDLFTDKLGMIEVMAHGAKKIGGKNSGAASLFSYATFCV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFL 118
SR ++ E + S + E +L +
Sbjct: 61 SRSSKGYTLNSAEPICSFYNISADIEALSLAAYFADIIKYCATSEEEHEDLLRFTCMTYF 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
K + I E L IGF DL C
Sbjct: 121 QLEKQKLPLRFIKAIFEFRFLSRIGFMPDLRAC 153
>gi|291530787|emb|CBK96372.1| DNA repair protein RecO [Eubacterium siraeum 70/3]
Length = 254
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 2/153 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR- 59
M +++G R GE + L++ T + G + + A +
Sbjct: 1 MLITLKGLVIGQRIIGENSCFLDLFTDKLGMIEVMAHGAKKIGGKNSGAASLFSYATFCV 60
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFL 118
SR ++ E + S + E +L +
Sbjct: 61 SRSSKGYTLNSAEPICSFYNISADIEALSLAAYFADIIKYCATSEEEHEDLLRFTCMTYF 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
K + I E L IGF DL C
Sbjct: 121 QLEKQKLPLRFIKAIFEFRFLSRIGFMPDLRAC 153
>gi|160891427|ref|ZP_02072430.1| hypothetical protein BACUNI_03877 [Bacteroides uniformis ATCC 8492]
gi|156858834|gb|EDO52265.1| hypothetical protein BACUNI_03877 [Bacteroides uniformis ATCC 8492]
Length = 242
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + ++I ++ T GR V +S + + Q LV +
Sbjct: 1 MLQKTLGIVLHTLKYKDTSLIADIYTEVAGRASFMVSIPRSRKAAVKPVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L L L+R + E L+ L
Sbjct: 61 ADFRPNATIYKVKEAKSLYPFATLPYDPYKSAIALFLSEFLYRAVREEAENRPLFAYLYH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SVIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHAGDYFD 163
>gi|282882452|ref|ZP_06291073.1| DNA repair protein RecO [Peptoniphilus lacrimalis 315-B]
gi|281297594|gb|EFA90069.1| DNA repair protein RecO [Peptoniphilus lacrimalis 315-B]
Length = 230
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 1/145 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ R +GE + IL++ T++ G + S + + + V + R +N
Sbjct: 9 EGIVIYERKHGESSKILKIFTKELGNISIMAKGSCSPKSSILSLSQVFVEGLYLFRPGRN 68
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L + +L ++ Y + + + + +Y +L+ L
Sbjct: 69 FYYIKSGRLINSNYELRNNFTNLCYASLILEIVEKSTLQSSSLNNIYRLLSKILRILCSS 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLT 149
+ L + +G+ L+
Sbjct: 129 KDPLAKTMAFILKFMSFMGYRPILS 153
>gi|300813867|ref|ZP_07094172.1| DNA repair protein RecO [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512054|gb|EFK39249.1| DNA repair protein RecO [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 230
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 1/145 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I++ R +GE + IL++ T++ G + S + + + V + R +N
Sbjct: 9 EGIVIYERKHGESSKILKIFTKELGNISIMAKGSCSPKSSILSLSQVFVEGLYLFRPGRN 68
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L + +L ++ Y + + + + +Y +L+ L
Sbjct: 69 FYYIKSGRLINSNYELRNNFTNLCYASLILEIVEKSTLQSSSLNNIYRLLSKILRILCSS 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLT 149
+ L + +G+ L+
Sbjct: 129 KDPLAKTMAFILKFMSFMGYRPILS 153
>gi|227544910|ref|ZP_03974959.1| recombination protein O [Lactobacillus reuteri CF48-3A]
gi|300910063|ref|ZP_07127523.1| recombination protein O [Lactobacillus reuteri SD2112]
gi|227185122|gb|EEI65193.1| recombination protein O [Lactobacillus reuteri CF48-3A]
gi|300892711|gb|EFK86071.1| recombination protein O [Lactobacillus reuteri SD2112]
Length = 261
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ + Y E++++++++T + G + FV+N + + + L +N
Sbjct: 9 TGIIMYRQDYRERDLLVKMLTDKIGPAMFFVKNAKKRGFRMTADILPFTHGTYIGSLDEN 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ S Y + + + ++ + L+ +
Sbjct: 69 GLSFINTASDTSQYKNIASDISKNAYVTYILALVDSAFNDGRSIGGWFNQVAAALDLIEK 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I IE LL G +CVV G L S + GG +C++
Sbjct: 129 GLDGQIITNIIETQLLVAFGVAPIWDRCVVCGRNDLALDFSEQYGGMLCQNH 180
>gi|20532223|sp|Q8XIU9|RECO_CLOPE RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 4/209 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
+ +I+ + Y E + +L + T + G+ + + + + L ++ +
Sbjct: 4 IESGGVIIKAQDYKENDKLLWIFTEKMGKITAIAKGAKKSKSKLFSLTHPLCYGDYLLFK 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ S L Y + L + E LY L
Sbjct: 64 GKGLYRLSEGKIRTSFQTSLTDLEKLTYASYLCELIDISLQDEEENFNLYKEFITCLYLI 123
Query: 122 KIP-SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
+ EL LLK G+GL CV L + S
Sbjct: 124 NTEAISYELLIRAFELKLLKYTGYGLRFDNCVFC--KNKLSVSNYISLRYFGGVCDKCPK 181
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
E L + + + ++ SL ++LT
Sbjct: 182 EHGLYINKATYNALRFLNNTSLDKVYRLT 210
>gi|255010095|ref|ZP_05282221.1| DNA repair protein RecO [Bacteroides fragilis 3_1_12]
gi|313147890|ref|ZP_07810083.1| DNA repair protein [Bacteroides fragilis 3_1_12]
gi|313136657|gb|EFR54017.1| DNA repair protein [Bacteroides fragilis 3_1_12]
Length = 242
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L + Y + + I+E+ T GR V +S + + Q L+
Sbjct: 1 MLQKTVGIVLHILKYNDTSNIVEMYTELSGRASFLVAVPRSKKAAVKSVLFQPLALIEFE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
R +L + S A + L L+R + E L+ L
Sbjct: 61 ADYRPNTSLFRIKEAKSFSPFASIPYDPFKSAIALFLAEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SILWLDACKISFANFHLVFLMRLSRFLGLYPNLDDYHTGDYFD 163
>gi|254448819|ref|ZP_05062275.1| DNA repair protein RecO [gamma proteobacterium HTCC5015]
gi|198261509|gb|EDY85798.1| DNA repair protein RecO [gamma proteobacterium HTCC5015]
Length = 206
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)
Query: 22 LEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKL 81
+E+++R G+ ++ R L+ NL+ + R R + +
Sbjct: 1 MELLSRSAGKVSAVAPGARNRRKNFSLEPFNLLDIACRGRGSLLTLSRAEPFGQYWA--- 57
Query: 82 LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK---IPSVIGKIFVQIELML 138
L+ GL + L FL E + EL+D +I L+ K + + EL L
Sbjct: 58 LAGESLYCGLYANELLSYFLAEGDAQPELFDRYSILLSDLKGATERGDRERCLREFELDL 117
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTID 198
L +GF +D ++ + ++ + L + + D
Sbjct: 118 LWLLGFSIDFSQDINEDEIVAETRYGLRADAGFYPLASSGSESVSGSVIGKLRQRQ--WD 175
Query: 199 ADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENF 232
+SL +A ++ + + RE F
Sbjct: 176 EESLLAAKRICRELIAFHL----NGRVLHSRELF 205
>gi|331083114|ref|ZP_08332231.1| DNA repair protein RecO [Lachnospiraceae bacterium 6_1_63FAA]
gi|330405116|gb|EGG84653.1| DNA repair protein RecO [Lachnospiraceae bacterium 6_1_63FAA]
Length = 247
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 4/194 (2%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW 58
M ++L GE + L ++TR+ G+ F + + + + V ++
Sbjct: 1 MNDFITVTGMVLSAMPVGEYDKRLVILTREKGKITVFAKGARRQNSTMMAVSNPFVFGSF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + R ++++ ++L YG + + E ++ ++L I
Sbjct: 61 LIYEGRTAYQLRSASVKNYFSELAGIQPEVYYGFYFLELADFYARENTDEKDMLNLLYIT 120
Query: 118 LNCHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + I EL + G + C G T++L W S + G C++ G
Sbjct: 121 LKALIAQRIEPMLIRYIFELKTVAINGEAPYVFACEECGTTEELQWFSVREAGVFCKNCG 180
Query: 177 LPYAEKMLVLPSFL 190
M + PS L
Sbjct: 181 NGKKGVMYISPSAL 194
>gi|308177457|ref|YP_003916863.1| DNA repair protein RecO [Arthrobacter arilaitensis Re117]
gi|307744920|emb|CBT75892.1| DNA repair protein RecO [Arthrobacter arilaitensis Re117]
Length = 249
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 5/207 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
+ ++L GE + I+ ++T G + + S RM L+ V
Sbjct: 11 YHTRGLVLRTHKLGEADRIITLLTP-QGIVRAVAKGVRRTSSRMGATLEPFMEVDALMVM 69
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLN 119
++ ++ + + L + Y + + +
Sbjct: 70 GRNLDIVSQAQLRNSYGQLLVMDYPSYTVANAMSEIAEKLLEAESDSTQQQYQLFHGAIA 129
Query: 120 CH-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K G + L L G+ T CV G V + GG VC +
Sbjct: 130 LLSKQRVDSGAVLDSYILRALSVAGWAPSFTSCVRCGAPGPHQAVHVQLGGVVCTNCRPS 189
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ + + D ++ A
Sbjct: 190 GSLSPHPITIGYLQALLEGDWATVAEA 216
>gi|262368559|ref|ZP_06061888.1| recombinational DNA repair protein [Acinetobacter johnsonii SH046]
gi|262316237|gb|EEY97275.1| recombinational DNA repair protein [Acinetobacter johnsonii SH046]
Length = 236
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 17/177 (9%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y E++ I+ + T+++GR G +R Q + + +
Sbjct: 7 HGYLIHHRKYRERSHIVHLFTQEHGRVDGILR-------QTPPPQYQPICLQASGKSELK 59
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML-------NIFL 118
++ + F G L R P + +
Sbjct: 60 N---FTKLEIVNQPIFFFGDAFFSGFYLNEILLRLCPLEVQMEQSFAQYAHTLTQLQQLA 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ +I Q E LL+++G+ LD + Q L + +
Sbjct: 117 QQADPNQFLKQILRQFEHELLEDLGYALDFSTDANQLEIQASLNYIFQLNEGFIPTA 173
>gi|270295443|ref|ZP_06201644.1| DNA repair protein RecO [Bacteroides sp. D20]
gi|317478440|ref|ZP_07937601.1| DNA repair protein RecO [Bacteroides sp. 4_1_36]
gi|270274690|gb|EFA20551.1| DNA repair protein RecO [Bacteroides sp. D20]
gi|316905399|gb|EFV27192.1| DNA repair protein RecO [Bacteroides sp. 4_1_36]
Length = 242
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + ++I ++ T GR V +S + + Q LV +
Sbjct: 1 MLQKTLGIVLHTLKYKDTSLIADIYTEVAGRASFMVSIPRSRKAAVKPVLFQPLALVELE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + + L L L+R + E L+ L
Sbjct: 61 ADFRPNATIYKVKEAKSLYPFATLPYDPYKSAIALFLSEFLYRAVREEAENRPLFAYLYH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SVIWLDECREGFANFHLVFLMRLSRFLGLYPNLEDYHAGDYFD 163
>gi|260589682|ref|ZP_05855595.1| DNA repair protein RecO [Blautia hansenii DSM 20583]
gi|260539922|gb|EEX20491.1| DNA repair protein RecO [Blautia hansenii DSM 20583]
Length = 247
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 4/194 (2%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW 58
M ++L GE + L ++TR+ G+ F + + + + V ++
Sbjct: 1 MNDFITVTGMVLSAMPVGEYDKRLVILTREKGKITVFAKGARRQNSTMMAVSNPFVFGSF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + R ++++ ++L YG + + E E+ ++L I
Sbjct: 61 LIYEGRTAYQLRSASVKNYFSELAGIQPEVYYGFYFLELADFYARENIDEKEVLNLLYIT 120
Query: 118 LNCHKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + I EL + G + C G T++L W S + G C++ G
Sbjct: 121 LKALIAQRIEPMLIRYIFELKTVAINGEAPYVFACEECGTTEELQWFSVREAGVFCKNCG 180
Query: 177 LPYAEKMLVLPSFL 190
M + PS L
Sbjct: 181 NGKKGVMYISPSAL 194
>gi|295099667|emb|CBK88756.1| DNA repair protein RecO [Eubacterium cylindroides T2-87]
Length = 244
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 8/202 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
+ I+L V+ Y E + I+ ++T+ R Q + + I Q + VR +
Sbjct: 8 EGIVLSVQDYRESDGIIRLLTQDK-ILSILARGIQKQTSKNRMITQVFSHVRYTIEQKEN 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ V++SH + + RF +Y + + L +
Sbjct: 67 GLSLLYYGNVIDSHYKIMEDLMKSSICFVLAEVITRF----HGNPTIYMLFDKCLKEFQN 122
Query: 124 PSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + +++ G + C++ L +S GG +C +
Sbjct: 123 DDAKAYNYACLLLAQIIQKEGIAPFVDGCILCKRKDHLETLSVTDGGFLCTTCNHDRILP 182
Query: 183 MLVLPSFLWKEEQTIDADSLKS 204
+ +
Sbjct: 183 RSKQEMIQIRSLFKANEKDFTQ 204
>gi|148543970|ref|YP_001271340.1| DNA replication and repair protein RecO [Lactobacillus reuteri DSM
20016]
gi|184153365|ref|YP_001841706.1| DNA repair protein RecO [Lactobacillus reuteri JCM 1112]
gi|227364883|ref|ZP_03848929.1| recombination protein O [Lactobacillus reuteri MM2-3]
gi|325682492|ref|ZP_08162009.1| recombination protein O [Lactobacillus reuteri MM4-1A]
gi|166918731|sp|A5VJH9|RECO_LACRD RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|229485535|sp|B2G6Z4|RECO_LACRJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|148531004|gb|ABQ83003.1| DNA replication and repair protein RecO [Lactobacillus reuteri DSM
20016]
gi|183224709|dbj|BAG25226.1| DNA repair protein RecO [Lactobacillus reuteri JCM 1112]
gi|227070087|gb|EEI08464.1| recombination protein O [Lactobacillus reuteri MM2-3]
gi|324978331|gb|EGC15281.1| recombination protein O [Lactobacillus reuteri MM4-1A]
Length = 261
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 2/181 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ + Y E++++++++T + G + FV+N + + + L +N
Sbjct: 9 TGIIMYRQDYRERDLLVKMLTDKIGPAMFFVKNAKKRGFRMTADILPFTHGTYIGSLDEN 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ S Y + + + + + L+ +
Sbjct: 69 GLSFINTASDTSQYKKIASDISKNAYVTYILALVDSAFNDGRSIGGWFKQVAAALDLIEK 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I IE LL G +CVV G L S + GG +C++ ++
Sbjct: 129 GLDEQIITNVIETQLLVAFGVAPVWDRCVVCGRNDLALDFSEQYGGMLCQNHWSLDEHRL 188
Query: 184 L 184
Sbjct: 189 Y 189
>gi|86609992|ref|YP_478754.1| DNA repair protein RecO [Synechococcus sp. JA-2-3B'a(2-13)]
gi|119361495|sp|Q2JIQ7|RECO_SYNJB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|86558534|gb|ABD03491.1| DNA repair protein RecO [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 285
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 13/165 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGN-----LVR 55
++ I L GE + I+ ++TR+ G + + ++ ++ +VR
Sbjct: 6 YRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVINDLLMVR 65
Query: 56 VNWRSRLA---QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYD 112
W ++ + + E L++ S + + EL+
Sbjct: 66 GRWSAQTETSQRLQRIVQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQEELFV 125
Query: 113 MLNIFLNCHKIPSVIG---KIFVQIELMLLKNIGFGLDLTKCVVT 154
+L L + + + LL GF + C
Sbjct: 126 VLVEHLERIERAASEQAVLPLLTHGLYHLLALAGFAPQVQACYFC 170
>gi|238060552|ref|ZP_04605261.1| hypothetical protein MCAG_01518 [Micromonospora sp. ATCC 39149]
gi|237882363|gb|EEP71191.1| hypothetical protein MCAG_01518 [Micromonospora sp. ATCC 39149]
Length = 68
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVN 57
++DDA++L V+ GE + I+ ++TR++GR R + + L+ V V
Sbjct: 9 YRDDAVVLRVQKLGESDRIITLLTRRHGRLRAVARGVRRTTSKFGARLEPFGHVDVQ 65
>gi|255530373|ref|YP_003090745.1| DNA repair protein RecO [Pedobacter heparinus DSM 2366]
gi|255343357|gb|ACU02683.1| DNA repair protein RecO [Pedobacter heparinus DSM 2366]
Length = 241
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 5/151 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L Y E ++I+++ T ++G + + R + +LQ +LV +
Sbjct: 1 MLHKTRGIVLKTTLYSESSVIVQIFTEKFGIQSYIINGVKKPRAKISMNMLQPLHLVDMI 60
Query: 58 WRSR-LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + L L++ + ++ L+D +
Sbjct: 61 VYHKANTNIQRVSALRPSPVFRSIPYDIIKSTIVLFLNEVLYKSIRQQTTDEHLFDFIFN 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGL 146
+ + F L L + +GF
Sbjct: 121 AICWFDETEELNVNFHLSFLLKLSRFLGFAP 151
>gi|150003957|ref|YP_001298701.1| DNA repair protein [Bacteroides vulgatus ATCC 8482]
gi|254790556|sp|A6L065|RECO_BACV8 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|149932381|gb|ABR39079.1| DNA repair protein [Bacteroides vulgatus ATCC 8482]
Length = 241
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L +Y + + I+++ TR+ GR V +S + + Q +++
Sbjct: 1 MLQKTVGIVLHTLNYNDTSNIVDIYTRENGRASFLVSVPRSRKSAVKTVLFQPLSMIEFE 60
Query: 58 WRSRL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + + L+R L E L+ L
Sbjct: 61 ADYRPMSNLYRIKEAKSWYPFRTLPYDPYKSSIAMFLAEFLYRALREEAENGPLFAYLEH 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ F + + +G +
Sbjct: 121 SIRWLDECDRSFSNFHLVFLMRFSRFLGLYPNTEDY 156
>gi|260438845|ref|ZP_05792661.1| DNA repair protein RecO [Butyrivibrio crossotus DSM 2876]
gi|292808684|gb|EFF67889.1| DNA repair protein RecO [Butyrivibrio crossotus DSM 2876]
Length = 247
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/210 (12%), Positives = 62/210 (29%), Gaps = 3/210 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQA-GNLVRVNWRS 60
+ +++ GE + + ++T++ G+ FVR + + + + +
Sbjct: 4 QIKVRGMVISSSPIGENDKRVVLLTKEKGKISAFVRGARRPGNHLMAASDSFSFGIFYLM 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
E+ + F E E + +++ +
Sbjct: 64 YGRDAYTVVNAEISNFFRELTSDLQKTYTAYYFLELAEYFTVENEDESMMLNLIYASFSA 123
Query: 121 H-KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
K I EL L G + C G + L S G +C++
Sbjct: 124 LVKGRINPRLIRYIFELKTLVINGEYPEFFACRNCGTKEHLTGFSIFHDGILCKNCA-KV 182
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLT 209
++ ++ + Q I +K+ F
Sbjct: 183 SKDVMEINGSTLYALQYIVYSDIKNLFTFV 212
>gi|265764975|ref|ZP_06093250.1| DNA repair protein RecO [Bacteroides sp. 2_1_16]
gi|263254359|gb|EEZ25793.1| DNA repair protein RecO [Bacteroides sp. 2_1_16]
Length = 242
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L V Y + + I+E+ T GR V +S + + Q L+
Sbjct: 1 MLQKTVGIVLHVLKYNDTSNIVEMYTELSGRASFLVTVPRSKKVTVKSVLFQPLALIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R +L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNTSLFRIKEAKSFSPFTSIPYDPFKSAIALFLAEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SILWLDTCKISFANFHLVFLMRLSRFLGLYPNLDDYHAGDYFD 163
>gi|53711591|ref|YP_097583.1| DNA repair protein [Bacteroides fragilis YCH46]
gi|60679841|ref|YP_209985.1| DNA repair protein RecO [Bacteroides fragilis NCTC 9343]
gi|253564358|ref|ZP_04841815.1| DNA repair protein RecO [Bacteroides sp. 3_2_5]
gi|81317086|sp|Q5LIK3|RECO_BACFN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|81608766|sp|Q64ZM7|RECO_BACFR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|52214456|dbj|BAD47049.1| DNA repair protein [Bacteroides fragilis YCH46]
gi|60491275|emb|CAH06023.1| possible DNA repair protein RecO [Bacteroides fragilis NCTC 9343]
gi|251948134|gb|EES88416.1| DNA repair protein RecO [Bacteroides sp. 3_2_5]
gi|301161361|emb|CBW20901.1| possible DNA repair protein RecO [Bacteroides fragilis 638R]
Length = 242
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L V Y + + I+E+ T GR V +S + + Q L+
Sbjct: 1 MLQKTVGIVLHVLKYNDTSNIVEMYTELSGRASFLVTVPRSKKATVKSVLFQPLALIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R +L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNTSLFRIKEAKSFSPFTSIPYDPFKSAIALFLAEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + L + +G +L
Sbjct: 121 SILWLDTCKISFANFHLVFLMRLSRFLGLYPNLDDYHAGDYFD 163
>gi|326797482|ref|YP_004315301.1| DNA repair protein recO [Sphingobacterium sp. 21]
gi|326548246|gb|ADZ76631.1| DNA repair protein recO [Sphingobacterium sp. 21]
Length = 240
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 5/151 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + I+L + Y E +++ ++ T ++G + + R + ILQ +L+ +
Sbjct: 1 MLHKTRGIVLKITPYAETSVVAQIFTEKFGIQSYLINGVKRARAKIHLNILQPLHLLDLV 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
+ L ++ + L +++ + ++ P +L++ L
Sbjct: 61 VYQKTTTGLNRMAEARQLPVFQRIPYDIIKSSMALFITEIIYKSIRQQGPDEKLFEYLFS 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGL 146
+ F L L K +GF
Sbjct: 121 AICWLDSSEETPINFHLAFLLKLTKYLGFYP 151
>gi|325299171|ref|YP_004259088.1| DNA repair protein recO [Bacteroides salanitronis DSM 18170]
gi|324318724|gb|ADY36615.1| DNA repair protein recO [Bacteroides salanitronis DSM 18170]
Length = 240
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 5/172 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRVN 57
M + I+L Y +++ I V T Q GR + +S + Q + Q +LV +
Sbjct: 1 MLQKHRGIVLHTLKYNDRSNIAHVYTEQGGRMSFLIPAQRSRKSMVRQVLFQPLSLVEFD 60
Query: 58 WRSRLA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R + + L L+R L E L L+ L
Sbjct: 61 AEVRPHAGLHPVREAKAWHVFQSLPYDPYKSAIALFLAEFLYRALKEEAANLPLFAYLVH 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS 167
+ + + L + +G + L S
Sbjct: 121 SVQWLDACGKSFANFHLVFLMRLSRFLGLYPNTEDYASGDYFDLLNACFVPS 172
>gi|226951497|ref|ZP_03821961.1| recombinational DNA repair protein (RecF pathway) [Acinetobacter
sp. ATCC 27244]
gi|226837790|gb|EEH70173.1| recombinational DNA repair protein (RecF pathway) [Acinetobacter
sp. ATCC 27244]
Length = 235
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R + ++
Sbjct: 8 HGYLIHHRRYREKSHIVHLFTQEYGRVDGILRQ----------IPPPQYQPIRLQATGKS 57
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ ++ + F G + R P E + + + L ++ +
Sbjct: 58 ELKNLTKLEILNQPVFFHGDAFFAGFYLNEIVLRLCPLEEAMPQTFQQYQLILLQLQLLA 117
Query: 126 VIGKIFVQ-------IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ E +LL+ +G+ +D + V Q +
Sbjct: 118 THEHAPLFLRQILRQFEHVLLQELGYAIDFSIDANQQVIQHEQNYQFQ 165
>gi|218885393|ref|YP_002434714.1| recombination protein O RecO [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218756347|gb|ACL07246.1| Recombination protein O RecO [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 506
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + + +I+ + E ++ + ++ G F G R + L N +
Sbjct: 1 MEFSEQVLIVRTGRFREADLWVRFLSPTRGLLTAFAFGGCRSRKRFCGCLDLFNRSLLRI 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+S + L +L + + L L +
Sbjct: 61 KSTRGGQYLSIQEGTLLRGPDRLRRDWPRFGAAVNCLKFLEALGCGPEGAAATHQLVEDV 120
Query: 119 NCHKI--PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
V + V L L G+ L C G
Sbjct: 121 LELLEGGGPVPDMLPVLFRLRLTAEQGYAPRLDSCASCG 159
>gi|294651019|ref|ZP_06728359.1| DNA repair protein RecO [Acinetobacter haemolyticus ATCC 19194]
gi|292823120|gb|EFF81983.1| DNA repair protein RecO [Acinetobacter haemolyticus ATCC 19194]
Length = 235
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R + ++
Sbjct: 8 RGYLIHHRRYREKSHIVHLFTQEYGRVDGILRQ----------IPPPQYQPIRLQATGKS 57
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ ++ + F G + R P E + + + L ++ +
Sbjct: 58 ELKNLTKLEILNQPVFFHGDAFFAGFYLNEIVLRLCPLEEAMPQTFQQYQLILLQLQLLA 117
Query: 126 VIGKIFVQ-------IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ E +LL+ +G+ +D + V Q +
Sbjct: 118 THEHAPLFLRQILRQFEHVLLQELGYAIDFSIDANQQVIQHEQNYQFQ 165
>gi|158337750|ref|YP_001518926.1| DNA repair protein RecO [Acaryochloris marina MBIC11017]
gi|229485521|sp|B0C0B6|RECO_ACAM1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|158307991|gb|ABW29608.1| DNA repair protein RecO [Acaryochloris marina MBIC11017]
Length = 293
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 3/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS-R 61
++ I L +GE + +L ++TR+ G + + + ++ V + +
Sbjct: 5 YKATGINLKSMPFGEADRLLTILTREQGLVRAVAPGCRKPKSKLGGRSALFVVNDLMLVQ 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E LES+ + + +P EL+D+ L
Sbjct: 65 GRSLDKIAQAETLESYPGLSQNLAKLTTSQYLAELTLYQALSGQPQTELWDLFCQQLTQL 124
Query: 122 KIPSVIGKIFVQIEL--MLLKNIGFGLDLTKCVVTG 155
+ ++ I LL G + C VT
Sbjct: 125 QNATLAQVPCCLIHGTLKLLAGAGIAPQVHACCVTH 160
>gi|284928635|ref|YP_003421157.1| DNA replication and repair protein RecO [cyanobacterium UCYN-A]
gi|284809094|gb|ADB94799.1| DNA replication and repair protein RecO [cyanobacterium UCYN-A]
Length = 278
Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/190 (11%), Positives = 64/190 (33%), Gaps = 4/190 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
++ I+L GE + ++ +++ + G + + ++ ++ + + +
Sbjct: 5 YKTTGIVLKSMPLGEADRLIIILSPEKGLIRAIAPSSRKNKSPLSGRSELFMVNQFLIIK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ E L+ + + + + +P ELY++LN L
Sbjct: 65 GHSLDKIAQAETLQFYPGLRKELVKLAAAQYLSELILKLSIDEQPQEELYELLNEHLRRL 124
Query: 122 KIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ S+ ++ + + + G G + +C +T + +P +G
Sbjct: 125 EKMSLAENLYGYLAQAIFHFLIVTGIGPQIYQCCLTQEKLTPNFKNPDWQVGFSHEMGGL 184
Query: 179 YAEKMLVLPS 188
L +
Sbjct: 185 INLNSLAYTN 194
>gi|241763852|ref|ZP_04761897.1| Recombination protein O RecO [Acidovorax delafieldii 2AN]
gi|241366896|gb|EER61310.1| Recombination protein O RecO [Acidovorax delafieldii 2AN]
Length = 310
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 2 YWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
D+ A +L + E ++ILEV R +GR + + S +P+L + V +
Sbjct: 6 RISDEPAFVLHSYDWSESSLILEVFCRHHGRVALVAKGAKKPSSNFRPVLLPLQPLLVTY 65
Query: 59 RSRLAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + + L G+ L R L +P L+D
Sbjct: 66 TLGGDGSAEVHTLKGAEWVGGHVMPTGDALLSGMYLNELLLRLLARDDPHPALFDAYAGV 125
Query: 118 LNCHKIPS 125
+
Sbjct: 126 VRVLASVH 133
>gi|332977454|gb|EGK14229.1| recombination protein O [Psychrobacter sp. 1501(2011)]
Length = 285
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 14/162 (8%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A L R Y EK I ++T+++G G + G + + +
Sbjct: 8 AYSLHQRPYQEKRSIYYLLTKEHGVLHGIAKKG---------IPQFVPLTLFATGKKSLK 58
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ ++E+ + + L + LP + +Y+ + + + P
Sbjct: 59 TLQQVNIVEAVPSLM--GQQQYAALYLNEITLKLLPVEDSMPVVYEQYSRTIRQLQQPLS 116
Query: 127 IGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP 165
+ ++ E +L +GF +D + V + W
Sbjct: 117 LDQLKLVLRLYEQVLFSELGFAIDFEQDSEQAVIDENQWYYF 158
>gi|194467793|ref|ZP_03073779.1| DNA repair protein RecO [Lactobacillus reuteri 100-23]
gi|194452646|gb|EDX41544.1| DNA repair protein RecO [Lactobacillus reuteri 100-23]
Length = 261
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 2/172 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ + Y E++++++++T + G + FV+N + + + L +N
Sbjct: 9 TGIIMYRQDYRERDLLVKMLTDKIGPAMFFVKNAKKRGFRMTADILPFTHGTYIGSLDEN 68
Query: 66 --LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ S Y + + + + + L+ +
Sbjct: 69 GLSFINTASDTSQYKKIASDISKNAYVTYILALVDSAFNDGRSIGGWFKQVAAALDLIEK 128
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
I IE LL G +CVV G L S + GG +C++
Sbjct: 129 GLDEQIITNVIETQLLVAFGVAPVWDRCVVCGRNDLALDFSEQYGGMLCQNH 180
>gi|153810739|ref|ZP_01963407.1| hypothetical protein RUMOBE_01123 [Ruminococcus obeum ATCC 29174]
gi|149833135|gb|EDM88217.1| hypothetical protein RUMOBE_01123 [Ruminococcus obeum ATCC 29174]
Length = 250
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 5/190 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ GE + + ++TR+ G+ F + + + A V N+ +
Sbjct: 8 QGVVISAMPVGEYDKRIVLLTRERGKISAFAKGARRLNSPFMAAADPFVFGNFTLYEGRT 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL--NCHKI 123
+ H +L + +Y + L + + L
Sbjct: 68 SYNLNQVSVTHHFVELATMQPGVYYGYYFLELADYFGREGTDEKEMMNLLYVTVKALLNS 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSVGLPYA 180
I EL + G L +C G ++ + S + G +C S
Sbjct: 128 RMDNRLIRCIYELRTMTEQGLCPQLFQCAGCGCEITGEESCFFSQELHGILCESCARGKR 187
Query: 181 EKMLVLPSFL 190
E + PS L
Sbjct: 188 EARRISPSAL 197
>gi|223044384|ref|ZP_03614418.1| DNA repair protein RecO [Staphylococcus capitis SK14]
gi|222442253|gb|EEE48364.1| DNA repair protein RecO [Staphylococcus capitis SK14]
Length = 253
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 3/193 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGLQAHTQMFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V++ H L Y + R + E E YD+L L+
Sbjct: 61 NKWRGMGTLNSVDVIDQHYELQLDLFESSYASLCTETIERSMEENEVSKYNYDLLYFVLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ + + + L + GF +CV+TG L+ S K GA+ V
Sbjct: 121 KIAEGTSAQLMSIVVLLKCMSKFGFTASFNQCVITGNEDQSKLVGYSFKFDGAISEEVLY 180
Query: 178 PYAEKMLVLPSFL 190
+ + L
Sbjct: 181 QDSHAFKLTNRSL 193
>gi|299144154|ref|ZP_07037234.1| DNA repair protein RecO [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518639|gb|EFI42378.1| DNA repair protein RecO [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 233
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 1/149 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRS 60
+ + I+L + YGE + I+ V +++ G+ + + + + N + +
Sbjct: 3 KIRTELIVLSEQKYGESSKIIRVFSKEKGKITILAKGALNAKSPLVSITQLFSHSNAYIN 62
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +L S+ + + L + E E +++D+ L
Sbjct: 63 KGRSFYYIESATILNSNFKIRKKYETLIISSYILELLDKTFLEGEVNKKIFDLTVKTLKI 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLT 149
+ + I I + EL + +G+ L
Sbjct: 123 IQNINYIMPIILAFELKYITFLGYRPSLE 151
>gi|218961362|ref|YP_001741137.1| hypothetical protein CLOAM1059 [Candidatus Cloacamonas
acidaminovorans]
gi|167730019|emb|CAO80931.1| hypothetical protein CLOAM1059 [Candidatus Cloacamonas
acidaminovorans]
Length = 251
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 1/182 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + AI++ Y E ++IL+ TRQ G + + + L +
Sbjct: 1 MKNKLLAILIKQSQYSESSLILQYFTRQQGMISVIAKGIRKKNEKQQLLPLCEYELIAYE 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
Q L F + + + SSS + + + + +E +YD+ +L+
Sbjct: 61 PKEQGLWLFSEANITRNFSAYPSSSTWAAAETGLELISHLIISQEDIATIYDLTISYLDY 120
Query: 121 HKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
K IF + + G G L+ C + D+ K+ G LP
Sbjct: 121 LKKVERNAILIFWRFLNRITILSGIGNPLSYCCLCKNPLDVPNAYLKTKGGFVCEKCLPE 180
Query: 180 AE 181
Sbjct: 181 IN 182
>gi|329920155|ref|ZP_08276986.1| DNA repair protein RecO [Lactobacillus iners SPIN 1401G]
gi|328936609|gb|EGG33053.1| DNA repair protein RecO [Lactobacillus iners SPIN 1401G]
Length = 248
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|86606064|ref|YP_474827.1| DNA repair protein RecO [Synechococcus sp. JA-3-3Ab]
gi|119361494|sp|Q2JQL5|RECO_SYNJA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|86554606|gb|ABC99564.1| DNA repair protein RecO [Synechococcus sp. JA-3-3Ab]
Length = 301
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 14/187 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRV---- 56
++ I L GE + I+ ++TR+ G + + + ++ + +
Sbjct: 6 YRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVNDLLVAR 65
Query: 57 -NWRSRLAQNLGEF---RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYD 112
W ++ + + E L+S S + +P EL+
Sbjct: 66 GRWSAQTDPSQCLQRIAQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQEELFV 125
Query: 113 MLNIFLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVT-QDLLWVSPKSG 168
+L L + + + L + G + C G + SP +G
Sbjct: 126 LLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGVAPSVQACYSCGEELAGEAFFSPHAG 185
Query: 169 GAVCRSV 175
G VC
Sbjct: 186 GLVCDPC 192
>gi|312872996|ref|ZP_07733056.1| DNA repair protein RecO [Lactobacillus iners LEAF 2062A-h1]
gi|325912081|ref|ZP_08174479.1| DNA repair protein RecO [Lactobacillus iners UPII 143-D]
gi|311091518|gb|EFQ49902.1| DNA repair protein RecO [Lactobacillus iners LEAF 2062A-h1]
gi|325476031|gb|EGC79199.1| DNA repair protein RecO [Lactobacillus iners UPII 143-D]
Length = 248
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|259500587|ref|ZP_05743489.1| DNA repair protein RecO [Lactobacillus iners DSM 13335]
gi|302191278|ref|ZP_07267532.1| DNA repair protein recO [Lactobacillus iners AB-1]
gi|309806596|ref|ZP_07700593.1| DNA repair protein RecO [Lactobacillus iners LactinV 03V1-b]
gi|312871774|ref|ZP_07731862.1| DNA repair protein RecO [Lactobacillus iners LEAF 3008A-a]
gi|312875542|ref|ZP_07735543.1| DNA repair protein RecO [Lactobacillus iners LEAF 2053A-b]
gi|259167971|gb|EEW52466.1| DNA repair protein RecO [Lactobacillus iners DSM 13335]
gi|308167016|gb|EFO69198.1| DNA repair protein RecO [Lactobacillus iners LactinV 03V1-b]
gi|311088796|gb|EFQ47239.1| DNA repair protein RecO [Lactobacillus iners LEAF 2053A-b]
gi|311092716|gb|EFQ51072.1| DNA repair protein RecO [Lactobacillus iners LEAF 3008A-a]
Length = 248
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALMKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|325912662|ref|ZP_08175045.1| DNA repair protein RecO [Lactobacillus iners UPII 60-B]
gi|325478083|gb|EGC81212.1| DNA repair protein RecO [Lactobacillus iners UPII 60-B]
Length = 248
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|312874194|ref|ZP_07734228.1| DNA repair protein RecO [Lactobacillus iners LEAF 2052A-d]
gi|311090264|gb|EFQ48674.1| DNA repair protein RecO [Lactobacillus iners LEAF 2052A-d]
Length = 248
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|300741495|ref|ZP_07071516.1| DNA repair protein RecO [Rothia dentocariosa M567]
gi|300380680|gb|EFJ77242.1| DNA repair protein RecO [Rothia dentocariosa M567]
Length = 255
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 6/158 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+D A+IL ++ GE + I+ ++T+ G ++ + + L+ ++
Sbjct: 8 RDHALILRTQNLGEADRIIIMLTQNNGVIHAVAKSIRKPNSKFGARLEPYMHTDISLTRG 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + ++ A L+ + +I + L + ++
Sbjct: 68 KTNLHIISQTATIHAYTATLMGNYNAYTAANTIAEIAETLNTNSTPHDTNPHYHLTHGAI 127
Query: 122 KIPSVIGKIFVQIELML----LKNIGFGLDLTKCVVTG 155
+ +I +K G+ + C
Sbjct: 128 ATLAHNKHTPQRILTSYILRAMKFAGWLIFTDTCTYCN 165
>gi|309803173|ref|ZP_07697270.1| DNA repair protein RecO [Lactobacillus iners LactinV 11V1-d]
gi|308164681|gb|EFO66931.1| DNA repair protein RecO [Lactobacillus iners LactinV 11V1-d]
Length = 248
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALMKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S + GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 188
>gi|314933738|ref|ZP_07841103.1| DNA repair protein RecO [Staphylococcus caprae C87]
gi|313653888|gb|EFS17645.1| DNA repair protein RecO [Staphylococcus caprae C87]
Length = 253
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 9/201 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGLQAHTQMFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y + R + E E YD+L L
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLFESSYASLCTETIERSMEENEVSKYNYDLLYFVLT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRS--- 174
+ + + + L + GF +CV+TG L+ S K GA+
Sbjct: 121 KIAEGTSAQLMSIVVLLKCMSKFGFTASFNQCVITGNEDQSKLVGYSFKFDGAISEEVLY 180
Query: 175 ---VGLPYAEKMLVLPSFLWK 192
+ L L L K
Sbjct: 181 QDPHAFKLTNRSLYLLDILQK 201
>gi|191638503|ref|YP_001987669.1| DNA repair protein recO (Recombination protein O) [Lactobacillus
casei BL23]
gi|190712805|emb|CAQ66811.1| DNA repair protein recO (Recombination protein O) [Lactobacillus
casei BL23]
Length = 247
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 2/182 (1%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLAQNLGE 68
++Y E +++++++T ++G+ + + + ++ R +
Sbjct: 2 SRQNYRESDMLVKILTDRFGKKMFLLNRARKPGFTLGAGILPFTHADYIGEVRESGLSYL 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG 128
+ + +L Y + P+ P ++ + L
Sbjct: 62 SAIKNATQYRQISDDITLNAYAAYIFGLIDLAFPDGRPVGFWFNQIKQALYLIDSGLDPQ 121
Query: 129 KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
I IE+ +LK G + CV+ G L S GG +C++ ++ P
Sbjct: 122 IIANVIEVQMLKEYGVEPNWRGCVIDGRADLPLDFSESYGGLLCQNHWDKDPHRLHASPR 181
Query: 189 FL 190
+
Sbjct: 182 VI 183
>gi|309810250|ref|ZP_07704095.1| DNA repair protein RecO [Lactobacillus iners SPIN 2503V10-D]
gi|308169522|gb|EFO71570.1| DNA repair protein RecO [Lactobacillus iners SPIN 2503V10-D]
Length = 248
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 2/179 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--Q 64
++ + Y + +++ ++MT + G ++ G + + + N N+
Sbjct: 10 GLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++V+ Y + + + +P + Y ++ L
Sbjct: 70 LSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALMKINEG 129
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
I +EL LL G + CV +Q + S GG VC++ +M
Sbjct: 130 IDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLPLGGIVCKNHFGSANTRM 188
>gi|317490527|ref|ZP_07949005.1| DNA repair protein RecO [Eggerthella sp. 1_3_56FAA]
gi|316910378|gb|EFV32009.1| DNA repair protein RecO [Eggerthella sp. 1_3_56FAA]
Length = 256
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 5/157 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+ AI+L GE ++IL ++ + + + + V+ +R
Sbjct: 6 YDARAIVLRKTKLGESDLILTLLAEDGSQIRAVAKGARKPVSSFAARLELYSVVDLLVAR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ES+ L R L+ + L+
Sbjct: 66 GRSLDIVKEARLVESNERLRRDIEHAAGAAPMAELLDRVTQMGLENPRLFALTRTALSSL 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFG---LDLTKCVVTG 155
++ LLK + F L CV G
Sbjct: 126 -GRVDPAQVPAVCAAHLLKTLAFAGLRPSLDVCVSCG 161
>gi|121609301|ref|YP_997108.1| DNA repair protein RecO [Verminephrobacter eiseniae EF01-2]
gi|171769489|sp|A1WKD3|RECO_VEREI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|121553941|gb|ABM58090.1| DNA repair protein RecO [Verminephrobacter eiseniae EF01-2]
Length = 254
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSR 61
+ A +L + E ++ILEV R GR + + S +P+L + +++
Sbjct: 9 DEPAFVLHSYDWSESSLILEVFCRHQGRVALVAKGAKKPSSNFRPVLLPLQPLWLSYALA 68
Query: 62 LAQNLGEFRFEV-LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
N + + + L GL L R L +P L+D +
Sbjct: 69 ADGNADIHTLKGAEWVGGHVMPTGDALLSGLYLNELLLRLLARSDPHAALFDAYTGVVRV 128
Query: 121 HKIPS 125
Sbjct: 129 LASEH 133
>gi|332678542|gb|AEE87671.1| DNA recombination and repair protein RecO [Francisella cf. novicida
Fx1]
Length = 232
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R + G
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + + + L LQ I L L ++ F+ + +
Sbjct: 65 LSKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDILFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 125 RHLLRMFELELLNSLGQGIYVDSDIDGMLIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISKVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|295100849|emb|CBK98394.1| DNA replication and repair protein RecO [Faecalibacterium
prausnitzii L2-6]
Length = 248
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 3/182 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
++L Y E + I+ ++T G ++ + + G + +
Sbjct: 6 TPGLVLKETRYKESDRIITLLTPGLGVISASAQSSLRLKSKLFSACGLFCYSEFVLVPGR 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
N+ R +++ + SS + + + L E EL +LN F K
Sbjct: 66 NMYTVREADVKNVFHGISSSIEGMSLAMYMAEMASALSPTGDEAAKELRLLLNCFYMISK 125
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV-SPKSGGAVCRSVGLPYAE 181
+ + I EL + GF L C G + P G +C S +
Sbjct: 126 KKADLRVIKAVFELRTMSECGFLPQLVYCRDCGTYDGPAFYLDPAEGCLLCESCAQKAGK 185
Query: 182 KM 183
K
Sbjct: 186 KC 187
>gi|198274302|ref|ZP_03206834.1| hypothetical protein BACPLE_00446 [Bacteroides plebeius DSM 17135]
gi|198272792|gb|EDY97061.1| hypothetical protein BACPLE_00446 [Bacteroides plebeius DSM 17135]
Length = 241
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM---QPILQAGNLVRVN 57
M + D ++L V Y +K+ I+ + T Q+G + +S + + + +LV V
Sbjct: 1 MLQKLDGVVLHVVRYSDKSNIVHIYTCQHGSMSFVIPATRSRKSLVNGALFRPLSLVEVE 60
Query: 58 WRSRLAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R +L + L + + L L E L+ L
Sbjct: 61 ADVRSRTSLPPVKEARLSYPLESVPYDPYKLSIAMFLAEFLSHALREEGKNEPLFAYLVS 120
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ S + + L + +GF +L
Sbjct: 121 SIRWLDACRSDYANFHLVFLIRLSRFLGFYPNLEDY 156
>gi|325831459|ref|ZP_08164713.1| DNA repair protein RecO [Eggerthella sp. HGA1]
gi|325486713|gb|EGC89161.1| DNA repair protein RecO [Eggerthella sp. HGA1]
Length = 256
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 5/157 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+ AI+L GE ++IL ++ + + + + V+ +R
Sbjct: 6 YDARAIVLRKTKLGESDLILTLLAEDGSQMRAVAKGARKPASSFAARLELYSVVDLLVAR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ES+ L R L+ + L+
Sbjct: 66 GRSLDIVKEARLVESNERLRRDIEHAAGAAPMAELLDRVTQMGLENPRLFALTRTALSSL 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFG---LDLTKCVVTG 155
++ LLK + F L CV G
Sbjct: 126 -GRVDPAQVPAVCAAHLLKTLAFAGLRPSLDACVSCG 161
>gi|325478390|gb|EGC81505.1| DNA repair protein RecO [Anaerococcus prevotii ACS-065-V-Col13]
Length = 255
Score = 65.2 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 4/189 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
+L Y E + I+EV T ++GR + + + ++VN + +
Sbjct: 10 TGFVLREFKYKESSKIVEVFTEKFGRISIIAKGVLKKNAKNLSLTARFMKVNLSLYKSGK 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + L K S + ++ L + +Y +L+ + +
Sbjct: 70 DFYGIKEGRLLETYKKSNKSFDIILYKSAMCDLLLRTIDETQIQTVYTLLDNSFHAFEKA 129
Query: 125 S-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL--WVSPKSGGAVCRSVGLPYAE 181
IF+ + + G + + C + G + S + +C +
Sbjct: 130 RGNYINIFLAFLIKYISFSGLKPNFSTCGICGKIIGRRDGYFSIEEASMICDDDMAKVGD 189
Query: 182 KMLVLPSFL 190
K+ + + +
Sbjct: 190 KLYLNHNQI 198
>gi|257439768|ref|ZP_05615523.1| DNA repair protein RecO [Faecalibacterium prausnitzii A2-165]
gi|257197788|gb|EEU96072.1| DNA repair protein RecO [Faecalibacterium prausnitzii A2-165]
Length = 250
Score = 65.2 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 2/181 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
++L Y E + IL ++T + G ++ + + G + +
Sbjct: 8 TPGLVLKETRYKESDRILTILTPELGVISASAQSSLRLKNKLFSACGLFCYSEFVLLPGR 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHK 122
N+ R + + + S+ + + + L E EL +LN +
Sbjct: 68 NMYTIREAEVRNVFHGISSTIEGMSLAMYLAEMAAALSPTGEEAAKELRLLLNCLYMISE 127
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ + + EL + GF L C + + G + A K
Sbjct: 128 GKTDLHVVKAVFELRTMSECGFLPQLVCCKICEKYDGPAFYLDPQEGILLCEDCAKKAGK 187
Query: 183 M 183
Sbjct: 188 T 188
>gi|208779892|ref|ZP_03247236.1| DNA repair protein RecO [Francisella novicida FTG]
gi|208744347|gb|EDZ90647.1| DNA repair protein RecO [Francisella novicida FTG]
Length = 232
Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R +
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINLAKKADSL 65
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + + L ++ L L+D + L +
Sbjct: 66 SKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANYR 125
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + Q+ G
Sbjct: 126 -YLLRMFELELLNSLGQGIYVDSDIDGMSIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISKVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|298491381|ref|YP_003721558.1| DNA repair protein RecO ['Nostoc azollae' 0708]
gi|298233299|gb|ADI64435.1| DNA repair protein RecO ['Nostoc azollae' 0708]
Length = 302
Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR---VNWR 59
+Q I L ++ GE + I+ ++T+++G + H ++G V + +
Sbjct: 5 YQATGINLKTQALGESDKIVTILTKEFGLIRAIATGARKHNSSLGGRSGIFVVNQLLISQ 64
Query: 60 SRLAQNLGE-----FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
R +Q + E ++++ + + +P ELY++L
Sbjct: 65 GRSSQPATPTLDKITQAETIKTYPSLTKDLGKLTASQYLAEIVLCQALSEQPQTELYELL 124
Query: 115 NIFLNCHKIPSVIGK-----IFVQIELMLLKNIGFGLDLTKCV 152
N L + LL G + C
Sbjct: 125 NEHLQRLEALPKTQGLDVVAHLAHGVFHLLALAGLTPQVQFCC 167
>gi|27468171|ref|NP_764808.1| DNA repair protein RecO [Staphylococcus epidermidis ATCC 12228]
gi|57867008|ref|YP_188709.1| RecO family DNA repair protein [Staphylococcus epidermidis RP62A]
gi|251810983|ref|ZP_04825456.1| recombination protein RecO [Staphylococcus epidermidis BCM-HMP0060]
gi|282876008|ref|ZP_06284875.1| DNA repair protein RecO [Staphylococcus epidermidis SK135]
gi|293366473|ref|ZP_06613150.1| DNA repair protein RecO family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|38258560|sp|Q8CP22|RECO_STAES RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|67461257|sp|Q5HNY1|RECO_STAEQ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|27315717|gb|AAO04852.1|AE016748_86 DNA repair protein RecO [Staphylococcus epidermidis ATCC 12228]
gi|57637666|gb|AAW54454.1| DNA repair protein RecO family [Staphylococcus epidermidis RP62A]
gi|251805493|gb|EES58150.1| recombination protein RecO [Staphylococcus epidermidis BCM-HMP0060]
gi|281295033|gb|EFA87560.1| DNA repair protein RecO [Staphylococcus epidermidis SK135]
gi|291319242|gb|EFE59611.1| DNA repair protein RecO family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725324|gb|EGG61807.1| DNA repair protein RecO [Staphylococcus epidermidis VCU144]
gi|329737236|gb|EGG73490.1| DNA repair protein RecO [Staphylococcus epidermidis VCU028]
Length = 253
Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGLQANTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L Y + R + E E YD+L L+
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLFESSYASLCAETIDRSMEENEVSKYNYDLLQFVLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSV 175
+ + V + L + GF C +TG+ L+ S K GA+ S
Sbjct: 121 KINEGTPAQLMSVIVLLKNMSKFGFTASFDHCAITGIQDQSKLIAYSFKFDGAISESA 178
>gi|88703549|ref|ZP_01101265.1| DNA repair protein RecO [Congregibacter litoralis KT71]
gi|88702263|gb|EAQ99366.1| DNA repair protein RecO [Congregibacter litoralis KT71]
Length = 259
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 73/248 (29%), Gaps = 23/248 (9%)
Query: 1 MYWQ-DDAIILGVRSYGEKNIILEVMTRQYGRHLGFV----RNGQSHRMQPILQAGNLVR 55
M Q + +L R + + + +L+V + +GR R + + +LQ +
Sbjct: 1 MRVQLEPCYLLHRRPFRDNSELLDVFSVAHGRLGLVARGLSRRRRGGSLGAVLQPFRPLL 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+++ + L L L R L E ++
Sbjct: 61 LSFSGKGELLT---LTGAESGGALPPLHGDALLSAFYLNELLLRLLQRFEEQPAIFTAYG 117
Query: 116 IFLNCHKIPSVIGKIF-------VQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPK 166
+ + + + E LL+ +G+ ++L G + +D +
Sbjct: 118 AAIGDLCDAANHEQERTVLEPALRRFEFRLLEELGYAVNLDVEASRGTPIREDGHYALVP 177
Query: 167 SGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
G + + + + D + +A + + + LQ + +
Sbjct: 178 EYGLREIEGDVCGSASSFTGEQIMAIADGRFDGEHAPAAKK-----MARALLQPQLGNAP 232
Query: 227 -LLRENFL 233
R F
Sbjct: 233 LRSRSMFE 240
>gi|313114168|ref|ZP_07799720.1| DNA repair protein RecO [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623577|gb|EFQ06980.1| DNA repair protein RecO [Faecalibacterium cf. prausnitzii KLE1255]
Length = 275
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 2/161 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
++L Y E + IL ++T + G ++ + + G + +
Sbjct: 33 TTGLVLKETRYKESDRILTILTPELGVISAAAQSSLRLKSKLFSACGLFCYSEFTLVPGR 92
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
N+ R +++ + SS + + P + +L
Sbjct: 93 NMYTVREAEVKNVFHGISSSIEGMSLAMYMAEMAMTLSPTGQEAQRELRLLLNCFYMISE 152
Query: 124 PSVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ I EL + GF + C +
Sbjct: 153 SKTDLRVIKAVFELRTMSECGFMPQIVCCRDCSAYDGAAFY 193
>gi|228474004|ref|ZP_04058745.1| DNA repair protein RecO [Capnocytophaga gingivalis ATCC 33624]
gi|228274518|gb|EEK13359.1| DNA repair protein RecO [Capnocytophaga gingivalis ATCC 33624]
Length = 236
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/231 (12%), Positives = 65/231 (28%), Gaps = 9/231 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRVNW 58
+ AI+L + + ++I+ T + G ++ S + + + + + +
Sbjct: 2 IRTKAIVLSHLKFRDTSLIVRCYTLE-GVRSYLLKGVLSQKKKALSPAYFEPLSQLELVT 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPL-FRFLPEREPCLELYDMLNIF 117
R +L + + KL S + L + + L E P L+
Sbjct: 61 TERNDGSLEYIKEAKVCFPYKKLQQSVIRSSVLFFLSEIGCSVLQEEHPNPSLFSFWEES 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L + ++ + L +G + + + + G S
Sbjct: 121 LQWYDRAEYFANFHLKFLVDLTLYLGVLPNTSAMELPYFDLEAGVFVAMHNGHSLMSEQD 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLL 228
K + S I + ++ + LN Y
Sbjct: 181 SLLLKFFLSHSLEEVCLLKISREE-RNGL--LEQLLNYYLWHLPNFKIPKS 228
>gi|116494997|ref|YP_806731.1| recombinational DNA repair protein (RecF pathway) [Lactobacillus
casei ATCC 334]
gi|301066559|ref|YP_003788582.1| recombinational DNA repair protein [Lactobacillus casei str. Zhang]
gi|116105147|gb|ABJ70289.1| DNA replication and repair protein RecO [Lactobacillus casei ATCC
334]
gi|300438966|gb|ADK18732.1| Recombinational DNA repair protein (RecF pathway) [Lactobacillus
casei str. Zhang]
Length = 247
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 4/194 (2%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS--RLAQNLGE 68
++Y E +++++++T ++G+ + + + ++ R +
Sbjct: 2 SRQNYRESDMLVKILTDRFGKKMFLLNRARKPGFTLGAGILPFTHADYIGEVRESGLSYL 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG 128
+ + +L Y + P+ P ++ + L
Sbjct: 62 SAIKNATQYRQISDDITLNAYAAYIFGLIDLAFPDGRPVGFWFNQIKQALYLIDSGLDPQ 121
Query: 129 KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
I IE+ +LK G + CV+ G L S GG +C++ ++ P
Sbjct: 122 IIANVIEVQMLKEYGVEPNWRGCVIDGRADLPLDFSESYGGLLCQNHWDKDPHRLHASPR 181
Query: 189 --FLWKEEQTIDAD 200
F + T+D +
Sbjct: 182 AIFYLRRFSTLDLN 195
>gi|309775527|ref|ZP_07670527.1| DNA repair protein RecO [Erysipelotrichaceae bacterium 3_1_53]
gi|308916621|gb|EFP62361.1| DNA repair protein RecO [Erysipelotrichaceae bacterium 3_1_53]
Length = 246
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 5/183 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M + I++ VR Y E + +L+V+ R + + P +Q L R+
Sbjct: 1 MQEEVCGILVDVREYREHDALLKVLCEDGSLMSLSARGVRKVTSKNAPAVQLFTLARLQL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ ++ R + + K+ + +Y +L L
Sbjct: 61 NYQETSSMQSLRRAEIINSYRKIREDLMKQSIAAYFCECIHKSGFE---DNVYGLLKQSL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + ++ + ++ + G + CV QD+ VS + GG VC+
Sbjct: 118 DILQDAEHPLQLLCLFQAIMNRMHGIEPYVDGCVRCQNMQDIQAVSRRDGGFVCKHCLRS 177
Query: 179 YAE 181
Sbjct: 178 GDH 180
>gi|260642619|ref|ZP_05859466.1| DNA repair protein RecO [Bacteroides finegoldii DSM 17565]
gi|260621280|gb|EEX44151.1| DNA repair protein RecO [Bacteroides finegoldii DSM 17565]
Length = 164
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 6/149 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M + I+L Y + +II+++ T GR V +S + + Q + +
Sbjct: 1 MLQKTKGIVLHTLKYNDTSIIVDIYTELSGRASFLVAVPRSRKAAVKSVLFQPLSFIEFE 60
Query: 58 WRSRLAQNLGEFRF-EVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
R L + + + L L+R + E L+ L
Sbjct: 61 ADYRPNATLYRVKEAKSFYPFSSIPYDPYKSAMALFLSEFLYRAIREEAENRPLFAYLQH 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFG 145
+ + L++ F
Sbjct: 121 SIIWLD--ECREGFSNFHLVFLMRLSRFW 147
>gi|317122969|ref|YP_004102972.1| DNA repair protein RecO [Thermaerobacter marianensis DSM 12885]
gi|315592949|gb|ADU52245.1| DNA repair protein RecO [Thermaerobacter marianensis DSM 12885]
Length = 303
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 5/155 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQ 64
+ I+L R YGE++ ++ ++ R+ R + + R + +
Sbjct: 7 EGIVLRTREYGERDRLVTLVDREGTRRTVLAKGVRRPRSSLAAGVQPYTYSRFLLWKGRS 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
G + +VL++ S F E P ++ ++ L
Sbjct: 67 LDGVSQVQVLDALTGLRGSLEALAAAAYVAELAEAFTQEGAPSPGVFPVVLQGLRGLAAA 126
Query: 125 SV----IGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
EL LL G G L C G
Sbjct: 127 PGDGVAHALWLRHAELRLLDLAGLGPQLDACQDCG 161
>gi|311113587|ref|YP_003984809.1| recombination protein O [Rothia dentocariosa ATCC 17931]
gi|310945081|gb|ADP41375.1| recombination protein O [Rothia dentocariosa ATCC 17931]
Length = 255
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 6/158 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSR 61
+D A+IL ++ GE + I+ ++T+ G ++ + + L+ ++
Sbjct: 8 RDHALILRTQNLGEADRIIIMLTQNNGVIHAVAKSIRKPNSKFGARLEPYMHTDISLTRG 67
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + ++ L+ + +I + L + ++
Sbjct: 68 KTNLHTISQTATIHAYTVTLMGNYNAYTAANTIAEIAETLNTNSTPHDTNPHYHLTHGAI 127
Query: 122 KIPSVIGKIFVQIELML----LKNIGFGLDLTKCVVTG 155
+ +I +K G+ + C
Sbjct: 128 ATLAHNKHTPQRILTSYILRAMKLAGWLIFTDTCTYCN 165
>gi|227485435|ref|ZP_03915751.1| DNA repair protein recO (Recombination protein O) [Anaerococcus
lactolyticus ATCC 51172]
gi|227236565|gb|EEI86580.1| DNA repair protein recO (Recombination protein O) [Anaerococcus
lactolyticus ATCC 51172]
Length = 258
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 9/214 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
I+L +Y E + I+EV T G+ + + + + ++ + +
Sbjct: 10 RGIVLREFNYKESSKIIEVFTETMGKISISCQGVLKKNSKNLALTTRFILASFDLYKSGK 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
R ++ + K + + +I L + ++ +L + +
Sbjct: 70 EFYGLREGIVLNPYYKSNKNFDIILYKSAICDLLLRTIDHIQIGTVFTLLTNSFDAFEEA 129
Query: 125 SVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVT--QDLLWVSPKSGGAVCRSVGLPY 179
LLK I GF + C + G L+ SP A+C
Sbjct: 130 KKNQ--VNIFLGFLLKYISFSGFKPNFKTCGICGKNIRGKYLYFSPSESSAICDECKDQI 187
Query: 180 AEKMLV-LPSFLWKEEQTIDADSLKSAFQLTDYF 212
+++ + F++ + +L + +
Sbjct: 188 FDRVFMTYEEFVYFNKLLYTKSEELEDIKLVEAY 221
>gi|260886790|ref|ZP_05898053.1| DNA repair protein RecO [Selenomonas sputigena ATCC 35185]
gi|330839398|ref|YP_004413978.1| DNA repair protein RecO [Selenomonas sputigena ATCC 35185]
gi|260863389|gb|EEX77889.1| DNA repair protein RecO [Selenomonas sputigena ATCC 35185]
gi|329747162|gb|AEC00519.1| DNA repair protein RecO [Selenomonas sputigena ATCC 35185]
Length = 257
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 2/153 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+A++L R++GE + + ++TR+ GR + + ++
Sbjct: 5 SAEALVLATRNWGEADKMASLLTRECGRVEAAAFGCRRPKSALAAGMQMFSHLDVELTEG 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC-LELYDMLNIFLNCHK 122
+ R L+ +L + + L L + +D L F +
Sbjct: 65 GRVWTVRQCSLKGRFRRLSEDLSAMAYGSFVAELALELFPEHEPAPDAFDRLLQFFCAFE 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ +L G L L CV G
Sbjct: 125 ERNPRLVALAAAYQLL-ALAGLSLHLASCVHCG 156
>gi|89256109|ref|YP_513471.1| DNA repair protein recO [Francisella tularensis subsp. holarctica
LVS]
gi|115314583|ref|YP_763306.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
OSU18]
gi|134301757|ref|YP_001121725.1| DNA repair protein RecO [Francisella tularensis subsp. tularensis
WY96-3418]
gi|167010796|ref|ZP_02275727.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
FSC200]
gi|169656567|ref|YP_001428192.2| putative DNA repair protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|187931491|ref|YP_001891475.1| RecFOR complex, RecO component [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254367434|ref|ZP_04983460.1| DNA repair protein recO [Francisella tularensis subsp. holarctica
257]
gi|290954506|ref|ZP_06559127.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
URFT1]
gi|295312022|ref|ZP_06802837.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
URFT1]
gi|89143940|emb|CAJ79159.1| DNA repair protein recO [Francisella tularensis subsp. holarctica
LVS]
gi|115129482|gb|ABI82669.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
OSU18]
gi|134049534|gb|ABO46605.1| DNA repair protein RecO [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134253250|gb|EBA52344.1| DNA repair protein recO [Francisella tularensis subsp. holarctica
257]
gi|164551635|gb|ABU61236.2| putative DNA repair protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|187712400|gb|ACD30697.1| RecFOR complex, RecO component [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 232
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R + G
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + + + L LQ I L L ++ F+ + +
Sbjct: 65 LSKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 125 RHLLRMFELELLNSLGQGIYVDSDIDGMLIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|254369112|ref|ZP_04985124.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
FSC022]
gi|157122062|gb|EDO66202.1| DNA repair protein RecO [Francisella tularensis subsp. holarctica
FSC022]
Length = 232
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R + G
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + + + L LQ I L L ++ F+ + +
Sbjct: 65 LSKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 125 RHLLRMFELELLNSLGQGIYVDSDIDGMLIQNNCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|291546835|emb|CBL19943.1| DNA replication and repair protein RecO [Ruminococcus sp. SR1/5]
Length = 252
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 2/152 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L G+ + + ++TR+ G+ F + + + A V ++ +
Sbjct: 8 QGVVLSAMPVGDYDKRIVLLTRERGKISAFAKGARRQNSPFMAAANPFVFGSFTLYEGRT 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL--NCHKI 123
++ H +L + +Y + L + + + L
Sbjct: 68 SYNLNQVSVQHHFVELATRQPGVYYGYYFLELADYFGKEGTDEKEMMNLLYVTIKAILNP 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL + G L +C G
Sbjct: 128 HIEDRLVRCIYELRTMVIQGVMPQLFQCAGCG 159
>gi|300726295|ref|ZP_07059748.1| DNA repair protein RecO [Prevotella bryantii B14]
gi|299776492|gb|EFI73049.1| DNA repair protein RecO [Prevotella bryantii B14]
Length = 240
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 5/160 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR---NGQSHRMQPILQAGNLVRVNWRS 60
+ AI+L + + I++++T + GR + + + Q L+ V +
Sbjct: 3 KTRAIVLHSIKFKDSQQIVDMLTEEQGRISFICHVSSSKKGKYKKQFFQPLTLLVVEYDY 62
Query: 61 RLAQNLGEFRFEVLE-SHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R L + +E +C+ + + L + + + L+ ++ +
Sbjct: 63 RSNSKLQHLQDIAIEFPYCSVPFDAFKLAISMFMAEFLLYATRDEQQNIPLFSYIHNSMR 122
Query: 120 CHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQ 158
F + L +GF +L +
Sbjct: 123 WLDGAVSSFSNFHLVFMMKLSLFLGFYPNLEDYHPGDIFD 162
>gi|210623876|ref|ZP_03294111.1| hypothetical protein CLOHIR_02062 [Clostridium hiranonis DSM 13275]
gi|210153302|gb|EEA84308.1| hypothetical protein CLOHIR_02062 [Clostridium hiranonis DSM 13275]
Length = 230
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 3/167 (1%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEF-RFEVLESHC 78
+IL + TR G+ + + ++ + A N+ + + + + E+++S
Sbjct: 1 MILTIFTRNLGKVSAIAKGAKRNKSALLPSAQLFAYSNFTLKKQRGMYRVSQSEIIKSFY 60
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELM 137
F Y + L E + +L++++ + I EL
Sbjct: 61 DISYDIDAFSYASYISRLVENSLLENQTNRKLFNLIVKTMYLLSQKDVDKEFITAAFELK 120
Query: 138 LLKNIGFGLDLTKCVVTGVTQDL-LWVSPKSGGAVCRSVGLPYAEKM 183
+GF +C V G D + + GG +C+ ++ +
Sbjct: 121 FSDCMGFRPITDRCSVCGDESDQRAIFNIEEGGMLCKKCAENFSGNI 167
>gi|330686117|gb|EGG97738.1| DNA repair protein RecO [Staphylococcus epidermidis VCU121]
Length = 252
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 3/184 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVEYGESDKIITILNEYGSKVPLMARRAKKIKSGLQAHTQMFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L + + R + E E YD+LN L
Sbjct: 61 NKWRGMGTLNCVDVINQHYELQLDLYESSFATLCAETIDRSMEENEISKYNYDLLNFVLT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ + + L + GF KCV++G T L+ S K GA+ +SV
Sbjct: 121 KISSGQSAQLMSIIVLLKCMNKFGFSALFNKCVISGNTDQSKLVGYSFKFDGAISQSVAY 180
Query: 178 PYAE 181
Sbjct: 181 QDPH 184
>gi|313159033|gb|EFR58408.1| DNA repair protein RecO family protein [Alistipes sp. HGB5]
Length = 242
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 7/151 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRVN- 57
++ ++L YG+ ++++ ++T GR V+ +S + + Q V
Sbjct: 4 YKGRGVVLHTLKYGDSSMVVYLLTDAGGRRSYMVQGVRSRNGRGSKLALFQPMFPVEFEG 63
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP-EREPCLELYDMLNI 116
S Q + L L+R + EP L+D +
Sbjct: 64 LESPRQQMHRFKEVRGGFVLQSLPFDVRKSTMALFMAEVLYRLVREYDEPNEALFDFVWN 123
Query: 117 FLNCHK-IPSVIGKIFVQIELMLLKNIGFGL 146
+ + + + L + +GF
Sbjct: 124 CVGALDSMDEGVANFHLWFLANLSRFLGFCP 154
>gi|313676335|ref|YP_004054331.1| DNA repair protein reco [Marivirga tractuosa DSM 4126]
gi|312943033|gb|ADR22223.1| DNA repair protein RecO [Marivirga tractuosa DSM 4126]
Length = 229
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 6/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----V 56
M + I+LG YGE ++I++V T ++G + + + + + V
Sbjct: 1 MLHKTKGIVLGHVKYGESSLIIQVYTEKFGIQSYIENGVRKAKAKHKMAIFQPLTLLDLV 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP-EREPCLELYDMLN 115
++ + +V + G+ L L E E ++ ++
Sbjct: 61 VYKKANSSINRMSEIKVNPPYRTIPYEIIKSSIGIFLAEFLNHILRGEEEDNPVMFGFIH 120
Query: 116 IFLNCHKIP-SVIGKIFVQIELMLLKNIGFGL 146
L +Q L +GF
Sbjct: 121 DSLTYFDQKGEDYINFHLQFLAQLTTYLGFKP 152
>gi|254373185|ref|ZP_04988674.1| hypothetical protein FTCG_00767 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570912|gb|EDN36566.1| hypothetical protein FTCG_00767 [Francisella novicida GA99-3549]
Length = 232
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R +
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINLAKKADSL 65
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + + L ++ L L+D + L +
Sbjct: 66 SKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANYR 125
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 126 -HLLRMFELELLNSLGQGIYVDSDIDGMLIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + + LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNNDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|329735352|gb|EGG71644.1| DNA repair protein RecO [Staphylococcus epidermidis VCU045]
Length = 253
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGLQANTQLFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L + R + E E YD+L L+
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLFESSCASLCAETIDRSMEENEVSKYNYDLLQFVLS 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSV 175
+ + V + L + GF C +TG+ L+ S K GA+ S
Sbjct: 121 KINEGTPAQLMSVIVLLKNMSKFGFTASFDHCAITGIQDQSKLIAYSFKFDGAISESA 178
>gi|124515729|gb|EAY57238.1| Recombination protein O (RecO) [Leptospirillum rubarum]
Length = 246
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 6/175 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRLAQ 64
A++L Y E + ++ +R+ G GF R S+R L+ L + R L
Sbjct: 5 ALVLRSVRYLESDRVVTFFSREEGVLTGFARGATGMSNRFGASLEPLTLSTILGRFHLEG 64
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQS-IVPLFRFLPEREPCLELYDMLNIFLNCH-K 122
L + + + + S Y I L LP P ++D+ +L
Sbjct: 65 TLYRIHKASIVNPFSYVKSDLDRCYWAGMGIRLLLGLLPPALPEPPVFDLAVNYLELLSA 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSV 175
+++ L +G+ + C + + L+ P G +C
Sbjct: 125 QKISPAFAWIRFAASALDLLGYQIRADDCSLCKESPFGNSLFYYPMDGRVLCSRC 179
>gi|153005322|ref|YP_001379647.1| DNA repair protein RecO [Anaeromyxobacter sp. Fw109-5]
gi|171769309|sp|A7HD67|RECO_ANADF RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|152028895|gb|ABS26663.1| DNA repair protein RecO [Anaeromyxobacter sp. Fw109-5]
Length = 256
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 3/153 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGF--VRNGQSHRMQPILQAGNLVRVNWRSR-L 62
++L YGE + ++ ++TR+ G+ GF R L+ L+ R R
Sbjct: 8 TGLVLRAVDYGESDRVVTLLTRERGKVSGFARGARASRRRFGGALEPFTLLVAEARERPG 67
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ LG VL +H + + + + EP EL +L +L
Sbjct: 68 SDMLGLESVSVLRAHGGIRGELARIACAGYAAELSRELVRDHEPHAELLALLLEYLGALD 127
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ EL L+ G + CV G
Sbjct: 128 AGPARPEGLRAFELGALRAAGLMPRVDACVACG 160
>gi|167753894|ref|ZP_02426021.1| hypothetical protein ALIPUT_02179 [Alistipes putredinis DSM 17216]
gi|167658519|gb|EDS02649.1| hypothetical protein ALIPUT_02179 [Alistipes putredinis DSM 17216]
Length = 245
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 6/150 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP----ILQAGNLVRVNW 58
++ I+L YG+ +++ ++T GR V+ +S R + + Q +
Sbjct: 8 YKARGIVLNSLKYGDSAMVVHLLTDALGRQSYMVQGVRSSRGRGSKLALFQPMFALEFEG 67
Query: 59 RSRLAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ Q + FR ++ L L+R + E EP +L+D +
Sbjct: 68 LTSSRQQMHRFREVQSGIVLQRMPFDVRRSTIALFMAEVLYRLVKESEPDSQLFDFVWES 127
Query: 118 LNCHK-IPSVIGKIFVQIELMLLKNIGFGL 146
+ + + + + L + +GF
Sbjct: 128 IGALDSMEEGVANFHLWFLVNLSRFLGFYP 157
>gi|254496977|ref|ZP_05109813.1| DNA repair protein recO [Legionella drancourtii LLAP12]
gi|254353801|gb|EET12500.1| DNA repair protein recO [Legionella drancourtii LLAP12]
Length = 204
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 14/213 (6%)
Query: 22 LEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKL 81
+ TR++G + G++ + Q +LQA + R + F +
Sbjct: 1 MSFFTREFGLIHCLCKGGRTPKKQALLQAFTPSWLTVDERYER---FFVKTIESISPTLQ 57
Query: 82 LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH---KIPSVIGKIFVQIELML 138
L L L+ L P L+D LN K + + + E L
Sbjct: 58 LVGHSLFSALYVNEILYHALSPHYPDTALFDAYLFTLNALVLTKDRLALESLLRRFEWTL 117
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTID 198
LK G+ T T + + G A + + L +D
Sbjct: 118 LKVCGYSFSFTHEARTDDC-----IVAELSYQFIAGEGFIIANRGIPGAHILALAADNLD 172
Query: 199 ADSLKSAFQLTDYFLNKYALQHNIIHCHLLREN 231
+ + + + K R
Sbjct: 173 EIDCLKSAK---HIMRKAIEHLLGGREIKARAL 202
>gi|303327128|ref|ZP_07357570.1| DNA repair protein RecO [Desulfovibrio sp. 3_1_syn3]
gi|302863116|gb|EFL86048.1| DNA repair protein RecO [Desulfovibrio sp. 3_1_syn3]
Length = 251
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M W D A++L + + E ++ L+++ R G F G R + L N ++
Sbjct: 1 MEWADQAVVLRIGHFRESDLWLKLLCRGRGLLTLFAFGGSRSRRRFCGCLDVLNTLQCRV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
++ +N VL S L + + + + L E + L L
Sbjct: 61 KTSGRENFLNLEEAVLLSGPQCLRGNWQRMGLAANCLRFVEALGVNEEGADETFALVEDL 120
Query: 119 N--CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ P + + + L L +GF +L +C G
Sbjct: 121 RRVLEEEPRLPSLLPLFFRLRLAGALGFAPNLGQCGACG 159
>gi|291520562|emb|CBK75783.1| DNA repair protein RecO [Butyrivibrio fibrisolvens 16/4]
Length = 241
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 2/173 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L GE + L ++T++ GR F + + + + + +N
Sbjct: 7 TGIVLVSSDVGEFDKRLVILTKESGRVTAFAKGARRPNNPLVAACSPFCFGTFEAFEGRN 66
Query: 66 LGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++ ++ G + E +L L +
Sbjct: 67 SYHISKANISNYFRDLVMDYEKVCLGSYFLEVADYLSVEGVDEKPRLALLYQSLKALESD 126
Query: 125 SVIGKIFVQIELMLLKNI-GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ I + I G ++ C G ++L S K G +C+
Sbjct: 127 KFSHRLLKNIYDLKTWVIDGEYPNVFTCSCCGKKENLTTFSLKRHGILCKECA 179
>gi|256828794|ref|YP_003157522.1| DNA repair protein RecO [Desulfomicrobium baculatum DSM 4028]
gi|256577970|gb|ACU89106.1| DNA repair protein RecO [Desulfomicrobium baculatum DSM 4028]
Length = 247
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + ++L V ++ E + + + +G F G+ R + L V++R
Sbjct: 1 MEFSEKVLVLRVGTFREADCWVRFFSPTHGLLTAFAFGGRRSRKRFCGCLDQLSLVHFRV 60
Query: 61 RLAQNLG-EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLP--EREPCLELYDMLNIF 117
+ + L + +L L + + V F LP +L
Sbjct: 61 SQGRQEYLCLQEGTLINGFGELKRDLKKLGMVSNCVRFFESLPFTPDGYAPAHELLLETL 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I + + + G+ DL +C G
Sbjct: 121 EALDEERPGSWFIPLMFRAKMAFSQGYQPDLQRCRQCG 158
>gi|295105594|emb|CBL03138.1| DNA replication and repair protein RecO [Faecalibacterium
prausnitzii SL3/3]
Length = 249
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 9/216 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L Y E + IL ++T + G N + + G + +N+
Sbjct: 8 GLVLKETRYREADRILTILTPKLGVITAMAANSLRLKSKLFSACGLFCYSEFTLVPGRNM 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHKIP 124
R +++ + SS + + L L E EL +LN ++
Sbjct: 68 YTVREADVQNIFHGISSSIEGVSLAMYLTELAAALSPTGEEAARELRLVLNSLYMINEHR 127
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG-----GAVCRSVGLPY 179
+ + I EL + GF + C G + + A C +
Sbjct: 128 TDLRVIKAVFELRTMSECGFMPQIVCCRDCGTYDEGDAFYLDAQEGHLLCASCAAKAGKN 187
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
L D AF+++ L K
Sbjct: 188 CNLDKAALFALRHICLVEDKKIF--AFKISVGSLEK 221
>gi|317056493|ref|YP_004104960.1| DNA repair protein RecO [Ruminococcus albus 7]
gi|315448762|gb|ADU22326.1| DNA repair protein RecO [Ruminococcus albus 7]
Length = 251
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 10/220 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-SHRMQPILQAGNLVRVNW----RS 60
++L GE + + V+T + G +VR G+ S + Q+ + + + +
Sbjct: 5 KGLVLKETDSGESSKSICVLTAEMGVIYIYVRGGRKSSKTTSATQSFSYSELCFEEKKNA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E ++ L ++ L E + C E+ + L
Sbjct: 65 KGQVSRYLNSSEPVKLFYNIRLDAAKVALASYFSELLIYSGTEGQNCAEVMRLALNTLYF 124
Query: 121 HKIPSVIGK-IFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVGLP 178
+ + E LL +G L C D + + C+
Sbjct: 125 LDEDKMETDLLKCVFEFRLLCELGMRPKLVGCAFCFKYEDDKMHFNYLEDRLECQDCCPN 184
Query: 179 YA---EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNK 215
+L + F+++D +L K
Sbjct: 185 PDSVHTIILDKQLLYIVRFIALTEYEKLFYFKISDKYLKK 224
>gi|148652188|ref|YP_001279281.1| DNA repair protein RecO [Psychrobacter sp. PRwf-1]
gi|148571272|gb|ABQ93331.1| DNA repair protein RecO [Psychrobacter sp. PRwf-1]
Length = 235
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A L R + EK I ++T+++G G + G + + S
Sbjct: 7 QAYSLHQRPFQEKRSIYYLLTKEHGVLHGVAKKG---------IPQFVPLTLFASGKKSL 57
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH---K 122
+ + ES + + L + LP + +Y+ + +
Sbjct: 58 KTLQQVHIAESVPSLM--GQQQYAALYVNEITLKLLPVEDSVPIIYEQYSQTMRQLQGVL 115
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV 163
+ + E +L +GF +DL + +
Sbjct: 116 SRDDLKMVLRAYEQVLFNELGFAIDLDQDCDQYPIEAEPLY 156
>gi|254514116|ref|ZP_05126177.1| DNA repair protein RecO [gamma proteobacterium NOR5-3]
gi|219676359|gb|EED32724.1| DNA repair protein RecO [gamma proteobacterium NOR5-3]
Length = 258
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 23/248 (9%)
Query: 1 MYWQDD-AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR----MQPILQAGNLVR 55
M Q +L R + + + +L+V + +YGR R R + +LQ +
Sbjct: 1 MRVQLQPCYLLHRRPFRDNSELLDVFSVEYGRLGLIARGLSRRRRGGPLGALLQPFRPLL 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+++ + E L L L R L E L+
Sbjct: 61 LSFSGKGELLTLTGAESGGELAP---LHGEALLSAFYLSELLLRLLQRFEVQPALFTAYG 117
Query: 116 IFLNCH-------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG--VTQDLLWVSPK 166
+ + + E LL+ +G+ +DL+ G + D +
Sbjct: 118 AAIADLSDVASTGNARLSLEPALRRFEFRLLEELGYAVDLSTDASCGAVIRADAHYALVP 177
Query: 167 SGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH 226
G + + + E D S +A ++ + L ++
Sbjct: 178 DFGFREVAAAASPSNASFAGTDIMAIAEGHFDGVSGLAAKRMV-----RTLLHPHLGSTP 232
Query: 227 -LLRENFL 233
R F
Sbjct: 233 LRSRSMFE 240
>gi|95929740|ref|ZP_01312481.1| DNA repair protein RecO [Desulfuromonas acetoxidans DSM 684]
gi|95134036|gb|EAT15694.1| DNA repair protein RecO [Desulfuromonas acetoxidans DSM 684]
Length = 251
Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGF--VRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+AI+L YGE + I+ ++TR +G F R L + +R+ W++R
Sbjct: 7 EAIVLRCTDYGEADRIVTLLTRDHGICGAFARNARSSRRRFGGALHPFSRLRITWQTRRR 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFL-PEREPCLELYDMLNIFLNCHK 122
L + L L+++ + L L PE + E+YD+L FL
Sbjct: 67 GGLPQLAEVELLDGAHGLMTNLDGMALAAYGCELIMALWPEEQAIPEVYDLLRSFLPAAA 126
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
+ + +EL LL G L C
Sbjct: 127 SSGAGETLRLLMELRLLDAAGLLPHLGHC 155
>gi|160895176|ref|ZP_02075949.1| hypothetical protein CLOL250_02736 [Clostridium sp. L2-50]
gi|156863210|gb|EDO56641.1| hypothetical protein CLOL250_02736 [Clostridium sp. L2-50]
Length = 247
Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 2/174 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
I+L GE + L ++TR+ G+ F + + Q I + V + +N
Sbjct: 9 GIVLSSGLQGEYDRRLVILTREQGKITAFAKGVRRPSSQLISKTQLFVMGAFTVYPGRNA 68
Query: 67 GEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP- 124
+ + +L + + YG + F E + + ++L + LN K
Sbjct: 69 YTLINVDAKEYFHELTFDMNKYCYGSYFCEMMSYFTREGDRSADYLNLLFVSLNALKKGL 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ I EL ++ G GL C + G + P SGG +C +
Sbjct: 129 LPVKLIRCVYELKIMDIFGQGLQSFHCPICGSDRLTRIFDPLSGGILCENCRSK 182
>gi|239637622|ref|ZP_04678594.1| DNA repair protein RecO [Staphylococcus warneri L37603]
gi|239596840|gb|EEQ79365.1| DNA repair protein RecO [Staphylococcus warneri L37603]
Length = 252
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 10/206 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + R + + V +
Sbjct: 1 MLMKQKGIIIKSVEYGESDKIITILNEYGSKVPLMARRAKKIKSGLQAHTQMFVYGLFIY 60
Query: 61 RLAQNLGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +G +V+ H L + + R + E E YD+LN L
Sbjct: 61 NKWRGMGTLNSVDVINQHYELQLDLYESSFATLCAETIDRSMEEDEISKYNYDLLNFVLT 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD--LLWVSPKSGGAVCRSVGL 177
+ + + L + GF +CV++G + L+ S K GA+ ++V
Sbjct: 121 KISSGQSAQLMSIIVLLKCMNKFGFSALFNQCVISGNSDQSKLVGYSFKFDGAISQAVA- 179
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLK 203
P L +T+ +
Sbjct: 180 ------YQDPHALQLSNKTLYLLDVL 199
>gi|70726351|ref|YP_253265.1| hypothetical protein SH1350 [Staphylococcus haemolyticus JCSC1435]
gi|82581563|sp|Q4L6R6|RECO_STAHJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|68447075|dbj|BAE04659.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 250
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 48/182 (26%), Gaps = 1/182 (0%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + II+ YGE + I+ ++ + VR + + V +
Sbjct: 1 MLEKQKGIIIKSVDYGESDKIITILNEHGAKIPLMVRRAKKSKTGLQAHTQLFVYGLFIY 60
Query: 61 RL-AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+V+ + L Y + R + + Y +L+ L
Sbjct: 61 NKWKGMGTLSSVDVINQYYDLRLDIFNSSYATLCTEAIERSMDNDDISPFHYKLLHFVLE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + + L + GF ++ V+ Y
Sbjct: 121 KISNGDSAQLMSIIVLLKCMNRFGFTAFFNHSAISNSYDQSKLVAYSFVYDGTILESELY 180
Query: 180 AE 181
+
Sbjct: 181 KD 182
>gi|299769160|ref|YP_003731186.1| DNA repair protein RecO [Acinetobacter sp. DR1]
gi|298699248|gb|ADI89813.1| DNA repair protein RecO [Acinetobacter sp. DR1]
Length = 237
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 72/238 (30%), Gaps = 21/238 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 N---FTKLEILNQPVFFFGDAFFAGFYLNEVVLRLCPLEETMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+I Q E +LL +G+ LD + Q + + V
Sbjct: 118 SHENPDLFLRQILRQFEHILLPELGYALDFSVDAQQQPIQAHQFYQFQVTEGFAPVVQAS 177
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+ + EQ D QL L + + + R+ ++
Sbjct: 178 RSSLSGKAILSMLDYEQGQDFS--LEQLQLLGK-LYRQMITSLLGDRPLKSRQLWIQN 232
>gi|323342096|ref|ZP_08082329.1| hypothetical protein HMPREF0357_10509 [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464521|gb|EFY09714.1| hypothetical protein HMPREF0357_10509 [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 232
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 6/205 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M +D I+ + + E + ++ + +YG + + + +V +R
Sbjct: 1 MNNKDVGFIVSIVPFREHDAMVHFLGYEYGLIRMILPGYYRAKSKQGRLGLEFSKVQYRF 60
Query: 61 RLAQNLGEFRFEVLESHCAK-LLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
++ + + + +L + + L + + Y +
Sbjct: 61 NFQEHKLNRIIGGESINAYLQVRQNLDWLMYMSLVSELTVRCFDFDSHHLFYQWFENCIE 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + ++ +++ GF D+ CV+ G T ++ S + GG VC +
Sbjct: 121 SNN----LEVHCIKYLAFIIQTQGFTPDVEGCVMCGST-NVNAFSIEHGGYVCATHAQHT 175
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKS 204
+ L L D D+
Sbjct: 176 IKTTKSLMIALLGIFSNRDVDAYLE 200
>gi|313903266|ref|ZP_07836658.1| DNA repair protein RecO [Thermaerobacter subterraneus DSM 13965]
gi|313466354|gb|EFR61876.1| DNA repair protein RecO [Thermaerobacter subterraneus DSM 13965]
Length = 288
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 5/155 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQ 64
+ I+L R YGE++ ++ ++ R R + + R + +
Sbjct: 7 EGIVLRTREYGERDRLVTLVDRDGTRRTVLAKGVRRPRSSLAAGVQPYTYSRFLLWKGRS 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
G + +VL++H S F E P ++ +L L
Sbjct: 67 LDGVSQVQVLDAHAGLRGSLEALAAAAYVAELAEAFTHEGAPSPGVFPVLLAVLRGLAAA 126
Query: 125 SVIGKIFVQI----ELMLLKNIGFGLDLTKCVVTG 155
EL LL G G+ L C G
Sbjct: 127 PADRVAQGLWLRHAELRLLDLAGLGIQLEACQDCG 161
>gi|262373075|ref|ZP_06066354.1| DNA repair protein RecO [Acinetobacter junii SH205]
gi|262313100|gb|EEY94185.1| DNA repair protein RecO [Acinetobacter junii SH205]
Length = 235
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R + ++
Sbjct: 8 HGYLIHHRKYREKSHIVHLFTQEYGRVDGILRQ----------TPPPQYQPIRLQASGKS 57
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ ++ + F G L R P E + + L + +
Sbjct: 58 ELKNFTKLEILNQPVFFHGDAFFAGFYLNEILLRLCPLEEAMSHTFQQYQVILLQLQQLA 117
Query: 126 VIGKIFVQ-------IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ V E +LL+ +G+ +D + +
Sbjct: 118 SHPQASVFLKQILRQFEHVLLQELGYAIDFSIDANQQEILAFQHYQFQ 165
>gi|257791389|ref|YP_003181995.1| DNA repair protein RecO [Eggerthella lenta DSM 2243]
gi|257475286|gb|ACV55606.1| DNA repair protein RecO [Eggerthella lenta DSM 2243]
Length = 256
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 5/157 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
+ AI+L GE ++IL ++ + + + + V+ +R
Sbjct: 6 YDARAIVLRKTKLGESDLILALLAEDGSQIRAVAKGARKPASSFAARLELYSVVDLLVAR 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++ES+ L R L+ + L+
Sbjct: 66 GRSLDIVKEARLVESNERLRRDIEHAAGAAPIAELLDRVTQMGLENPRLFALTRTALSSL 125
Query: 122 KIPSVIGKIFVQIELMLLKNIGFG---LDLTKCVVTG 155
++ LLK + F L CV G
Sbjct: 126 -GRVDPAQVPAVCAAHLLKTLAFAGLRPSLDVCVSCG 161
>gi|220904187|ref|YP_002479499.1| DNA repair protein RecO [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868486|gb|ACL48821.1| DNA repair protein RecO [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 250
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 4/158 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
W D A++L + + E ++ L+ + R++G F G R + L ++ R +
Sbjct: 3 EWADHALVLRMGHFRESDLWLKTLCRKHGLLTLFAFGGSRSRRRFCGCLDVLNSLHCRVK 62
Query: 62 LAQNLGEFRFEV---LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ G E L A + + + E + ++
Sbjct: 63 TSPRGGFLNLEEAVLLGGPQALRQDWRRMGLAANCLRFVEALGVNDDGADEAFALVEDMR 122
Query: 119 NCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTG 155
+ + +F L L +GF L C + G
Sbjct: 123 RTLEEAPALPALFPLFFRLRLAGALGFAPSLDVCGLCG 160
>gi|56708286|ref|YP_170182.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670757|ref|YP_667314.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
FSC198]
gi|224457407|ref|ZP_03665880.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370770|ref|ZP_04986775.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
FSC033]
gi|254875107|ref|ZP_05247817.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
MA00-2987]
gi|54113119|gb|AAV29193.1| NT02FT1265 [synthetic construct]
gi|56604778|emb|CAG45857.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110321090|emb|CAL09240.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
FSC198]
gi|151569013|gb|EDN34667.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
FSC033]
gi|254841106|gb|EET19542.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159515|gb|ADA78906.1| DNA repair protein recO [Francisella tularensis subsp. tularensis
NE061598]
Length = 232
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R + G
Sbjct: 8 YILYQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + + + L LQ I L L ++ F+ + +
Sbjct: 65 LSKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 125 RHLLRMFELELLNSLGQGIYVDSDIDGMLIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|332184360|gb|AEE26614.1| DNA recombination and repair protein RecO [Francisella cf. novicida
3523]
Length = 232
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ + TR++G+ + + + + Q ++ + + G
Sbjct: 8 YILHQRKYRENSLLVSIFTREFGKVSALI--TVNKKTTNLYQPLVKLKGQIKL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + S + L LQ I L L ++ F+ + +
Sbjct: 65 LAKIYNIEFVESFYQKSYINLLSLQYINELIYLLLNYSHEEDILFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + Q+ + G L
Sbjct: 125 RYLLRMFELELLNSLGQGIYADSDIDGISIQNDCSYTILPNGFRKDLD-LATNCISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ YAL R+ + L
Sbjct: 184 KKINQPLSSWSNDDLKAISRVTRVCID-YALA---GKQLKSRKLLIDYLN 229
>gi|160945170|ref|ZP_02092396.1| hypothetical protein FAEPRAM212_02689 [Faecalibacterium prausnitzii
M21/2]
gi|158442901|gb|EDP19906.1| hypothetical protein FAEPRAM212_02689 [Faecalibacterium prausnitzii
M21/2]
Length = 249
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 68/233 (29%), Gaps = 16/233 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L Y E + IL ++T + G N + + G + +N+
Sbjct: 8 GLVLKETRYREADRILTILTPKLGVITAMAANSLRLKSKLFSACGLFCYSEFTLVPGRNM 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPE--REPCLELYDMLNIFLNCHKIP 124
R +++ + SS + + L L E EL +LN ++
Sbjct: 68 YTVREADVQNIFHGISSSIEGVSLAMYLTELAAALSPTGEEAARELRLVLNSLYMINEHR 127
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG-----GAVCRSVGLPY 179
+ + I EL + GF + C G + + A C +
Sbjct: 128 TDLRVIKAVFELRTMSECGFMPQIVCCRDCGTYDEGDAFYLDAQEGHLLCASCAAKAGKN 187
Query: 180 AEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFL-------NKYALQHNIIHC 225
L D AF+++ L YAL H
Sbjct: 188 CNLDKAALFALRHICLVEDKKIF--AFKISVGSLAKLSAVAENYALTHLDKPL 238
>gi|284047994|ref|YP_003398333.1| DNA repair protein RecO [Acidaminococcus fermentans DSM 20731]
gi|283952215|gb|ADB47018.1| DNA repair protein RecO [Acidaminococcus fermentans DSM 20731]
Length = 248
Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 17/246 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRS 60
+QD+A+IL V+++ + R++G+ + ++Q +R+
Sbjct: 6 FQDEAVILRVKNWQTADKYAVCFCREHGKISFVAYGAAYPRSQSGRLVQPFAHLRLTLNP 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + YG L E EP E++ +L
Sbjct: 66 GRKVASLRGCESLEM---PLAMDWENLAYGAIIGEAAEHLLGEEEPQEEVFQLLLEAFRL 122
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT-GVTQDLLWVSPKSGGAVCRSVG--- 176
+ + L LL G L +C + + S GG +C+
Sbjct: 123 LGKRNRRL-VTDSTLLKLLALCGLNPILDQCTSCGESVTEDGYFSLVQGGFLCKKCAMGD 181
Query: 177 ---LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLR-ENF 232
A + L+ + D + L+++ L R F
Sbjct: 182 ELPFTVATRDLMDRLLHLDLQAPPDFTVRGRELMAMEKILHQFILYQTDRPL---RSLEF 238
Query: 233 LGKLLE 238
L K+
Sbjct: 239 LAKMEN 244
>gi|330836366|ref|YP_004411007.1| DNA repair protein RecO [Spirochaeta coccoides DSM 17374]
gi|329748269|gb|AEC01625.1| DNA repair protein RecO [Spirochaeta coccoides DSM 17374]
Length = 267
Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 6/185 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
D I+L R G+ + L ++ G + + Q + +
Sbjct: 8 DGIVLRTRRMGDMHRRLSLLCPDLGIIDVIAYGARKGKRAMNAQMFSRSTFFLYHNPVRK 67
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ H R L+ +L+ L+ +
Sbjct: 68 EYTLKDARMESPHDGVRSRLDSMWAASFWSELCTRTAGGDW--NALFLLLSECLDALEED 125
Query: 125 S-VIGKIFVQIELMLLKNIGFGLDLTKC--VVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + +Q LL G DLT+C T D + S + C +
Sbjct: 126 PSSVERASIQFVWHLLHLAGIAPDLTRCPVSERVYTHDEILGFSASLLSPCSRENGDVDD 185
Query: 182 KMLVL 186
+L
Sbjct: 186 MLLPP 190
>gi|239906719|ref|YP_002953460.1| putative DNA repair protein [Desulfovibrio magneticus RS-1]
gi|259563677|sp|C4XS52|RECO_DESMR RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|239796585|dbj|BAH75574.1| putative DNA repair protein [Desulfovibrio magneticus RS-1]
Length = 249
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + D A+IL V+ + E + + +++ G + F G R + + L V ++
Sbjct: 1 MEYSDQALILAVKRFREIDAWVRLLSPTRGVYTAFAFGGLKSRRRFLGCLDPLNHVQFKV 60
Query: 61 RLAQNLGEFRFEV---LESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
R + G L++ + + + Y ++
Sbjct: 61 RRSGYRGYHCLAEGKLLDAPRQLRSHPQRLGMAVNCLKFFEAAPVAPGSFAQAYGLMRAM 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTG 155
L+ +F + G +C V G
Sbjct: 121 LSTLDAADEPSPLFPLLFRARMTFLHGMLPACGQCAVCG 159
>gi|83319326|ref|YP_424479.1| DNA repair protein RecO [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|123535681|sp|Q2SRY4|RECO_MYCCT RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|83283212|gb|ABC01144.1| DNA repair protein RecO [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 249
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 6/211 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN--- 57
M I+L + + + I+ + + YG+ + + L N
Sbjct: 1 MEKTLKGIVLNSFDFRDYDKIITIYSNLYGKISLVCLGVNKTKSKNKYAINYLSYSNFEI 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++++ L + + L + + + + + L L + L+ +L +
Sbjct: 61 FKAKNKLGLSKLKRSELINSFSHIATDFNLYVYANVLTSLVMNLEDHMKNYNLFKILKLS 120
Query: 118 LNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ I LK IG ++LT C + + + C S
Sbjct: 121 IFLINSKPNISFKVCILFMFYFLKIIGNQINLTVCGFCNSKINPIIAISFTNY--CSSCK 178
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
Y + L++ + L +I D ++
Sbjct: 179 FCYFDDCLIIDNQLKNFINSIVKDDFIASLN 209
>gi|227500711|ref|ZP_03930760.1| DNA repair protein RecO [Anaerococcus tetradius ATCC 35098]
gi|227217169|gb|EEI82518.1| DNA repair protein RecO [Anaerococcus tetradius ATCC 35098]
Length = 255
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 63/212 (29%), Gaps = 5/212 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
IL Y E + I+EV T + G+ R + G ++VN + +
Sbjct: 10 TGFILREFPYHETSKIVEVFTDKLGKVSILARGVYRKNSDKLSLTGRFMKVNLSLYKSGK 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI- 123
+ R + + K + + +I + ++ +L+ +
Sbjct: 70 DFYGIREGEVLENYKKSQKNFDVILYKSAICDFLLKTMDETQIDTVFKLLDTSFRAFEEA 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT--QDLLWVSPKSGGAVCRSVGLP-YA 180
IF+ + + G + + C + G + S + +C
Sbjct: 130 EKNYINIFLAFMIKYISFSGLKPNFSTCGICGKIIDNGNNFFSIEEASVICEDDKKKALD 189
Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYF 212
L FL+ + + ++ +
Sbjct: 190 RIFLSYDEFLYFYKLLYSRSDELANLSPSENY 221
>gi|257065849|ref|YP_003152105.1| DNA repair protein RecO [Anaerococcus prevotii DSM 20548]
gi|256797729|gb|ACV28384.1| DNA repair protein RecO [Anaerococcus prevotii DSM 20548]
Length = 255
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 4/190 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQ 64
IL SY E + I+EV T + GR R + G ++VN ++
Sbjct: 10 TGFILREFSYKETSKIIEVFTDKVGRISIMARGVYRKNSGLLSLTGRFMKVNLSLYKMKG 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH-KI 123
+ R L K + + ++ + ++ +L+
Sbjct: 70 DFYGIRDGYLVESYKKSAKNFDIILYKSAMCDFLLKTIDTNQKDTVFKLLDTSFRALEDA 129
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL--WVSPKSGGAVCRSVGLPYAE 181
IF+ + + G + + C + G D + S + +C +
Sbjct: 130 DYGYLNIFLGFLIKYISFSGLKPNFSTCGICGRIIDKATGYFSIREASLICEEHKKDAGD 189
Query: 182 KMLVLPSFLW 191
+ + L
Sbjct: 190 VIYLTRDDLL 199
>gi|295109869|emb|CBL23822.1| DNA replication and repair protein RecO [Ruminococcus obeum A2-162]
Length = 250
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 5/190 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ GE + + ++TR+ G+ F + + + A V N+ +
Sbjct: 8 QGVVISAMPVGEYDKRIVLLTRERGKISAFAKGARRLNSPFMAAADPFVFGNFTLYEGRT 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL--NCHKI 123
+ H +L + +Y + L + + L
Sbjct: 68 SYNLNQVSVTHHFVELATMQPGVYYGYYFLELADYFGREGTDEKEMMNLLYVTVKALMNH 127
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSVGLPYA 180
I EL + G L +C + + S + G +C S L
Sbjct: 128 QLDDRLIRCIYELRTMVEQGLCPQLFQCTGCEKEISDSEDCFFSQEMHGILCISCALGKR 187
Query: 181 EKMLVLPSFL 190
+ + PS L
Sbjct: 188 DARRISPSAL 197
>gi|169632756|ref|YP_001706492.1| DNA repair protein [Acinetobacter baumannii SDF]
gi|169151548|emb|CAP00315.1| DNA repair protein [Acinetobacter baumannii]
Length = 236
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 7 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 59
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY-------DMLNIFL 118
++ + F G + R P E + + L
Sbjct: 60 N---FTKLEILNQPVFFFCDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLF 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+ + +I Q E +LL +G+ +D + + +
Sbjct: 117 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 164
>gi|149918195|ref|ZP_01906687.1| DNA repair protein RecO [Plesiocystis pacifica SIR-1]
gi|149820955|gb|EDM80362.1| DNA repair protein RecO [Plesiocystis pacifica SIR-1]
Length = 268
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 3/155 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSRL 62
A++L R+Y E ++++ ++T G+ F R + + L G
Sbjct: 13 TPAVVLRTRAYREADLVVILLTPTLGKVDAFARAARRSHKRFPGGLPVGGRGEAVLGRGR 72
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN-CH 121
RF H F Y R L + +L +
Sbjct: 73 GSLTPLDRFSPTTEHSRLGRDLEAFAYVNYLCELSDRLLGGSAADPTSFALLCDAIETAL 132
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ + EL LL ++G L C V G
Sbjct: 133 DPDARDPGTLRRFELSLLHSLGLLPALASCSVCGD 167
>gi|213859105|ref|ZP_03385076.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 46
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM 44
A +L R + E +++L+ T + GR + +S R
Sbjct: 2 RAFVLHSRPWSETSLMLDAFTEESGRVRLVAKGARSKRS 40
>gi|333029411|ref|ZP_08457472.1| DNA repair protein recO [Bacteroides coprosuis DSM 18011]
gi|332740008|gb|EGJ70490.1| DNA repair protein recO [Bacteroides coprosuis DSM 18011]
Length = 242
Score = 61.8 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 61/225 (27%), Gaps = 8/225 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVN 57
M + ++L V Y + I+++ T GR V +S + + + Q ++ +N
Sbjct: 1 MEEKTLGVVLKVIKYNDTTNIVDLYTECLGRCSVAVNIPKSSKARVKSNLFQPLAILDLN 60
Query: 58 W-RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
RS+ + + + + ++ + E L+ L
Sbjct: 61 LSRSKKGGLYRVKDAKPHLAFQSIPYNPYKSAIAFFIAEFIYYAVKEEGESGSLFSYLMN 120
Query: 117 FLNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + + L +G ++ L + +
Sbjct: 121 SIQWLDESQNSYANFHLVFMMRLSLFLGLYPNIDNYTEGDYFDLLNASFISYKPTLHNNY 180
Query: 176 GLPYAEKMLVLPSFLWKEEQ---TIDADSLKSAFQLTDYFLNKYA 217
P +V + E ++ + F +
Sbjct: 181 LEPLGASHIVQLMRMNYETMYLFKLNRHDRNEILDVLSDFYKIHI 225
>gi|326794407|ref|YP_004312227.1| DNA repair protein RecO [Marinomonas mediterranea MMB-1]
gi|326545171|gb|ADZ90391.1| DNA repair protein RecO [Marinomonas mediterranea MMB-1]
Length = 243
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 47/173 (27%), Gaps = 4/173 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R++ E ++++++T + G +R Q + + R
Sbjct: 4 RGYVIHTRTFQENKVLIDILTAEAGLLRTVLR-VSKKEAQVLPGPFLRYELEVSGRGELK 62
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ A + L + +P P L+ + +N
Sbjct: 63 T---LKSIEGVGAAFRFEGLYLYSAMYIHEILEKVVPLNLPLENLFALYEWLINGFNDQL 119
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I + + E L +G +++ + + G
Sbjct: 120 PIAPVLRRFEAGLFDEVGMSINMGSTATGQLLSPQQVYQFIPRFGLKPYHGEQ 172
>gi|294661225|ref|YP_003573101.1| hypothetical protein Aasi_1674 [Candidatus Amoebophilus asiaticus
5a2]
gi|227336376|gb|ACP20973.1| hypothetical protein Aasi_1674 [Candidatus Amoebophilus asiaticus
5a2]
Length = 217
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 5/138 (3%)
Query: 14 SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLV-RVNWRSRLAQNLGEF 69
Y E +II+ + T +G+ V + + + + + Q + V + +
Sbjct: 2 KYREASIIVRIFTELFGKQSYVVNSVRMLKARHSIALFQPFMPLDMVVYHKKSVTLQRIV 61
Query: 70 RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI-PSVIG 128
+ L L + L E E L++ L +
Sbjct: 62 EVKCHTPITNILCDLKKATIATFLTELLNKVLYEEEHNENLFEFLLQAVIKLNSLADRYE 121
Query: 129 KIFVQIELMLLKNIGFGL 146
++ L L +GFGL
Sbjct: 122 LFYLDFMLQLCSYLGFGL 139
>gi|222151465|ref|YP_002560621.1| hypothetical protein MCCL_1218 [Macrococcus caseolyticus JCSC5402]
gi|254764642|sp|B9E6V7|RECO_MACCJ RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|222120590|dbj|BAH17925.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 251
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 2/192 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + I++ +YG+ ++I+ + + RN + + S
Sbjct: 1 MLKKAVGIVIRRVAYGDNHLIITFLNEAGVKVALMARNARKSTKYGSGLDLFYENLFIFS 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + SH + Y + + R L E E Y +L + L
Sbjct: 61 QFKGMGTLSSVDTINSHYEIREDIYVMTYAQYVVELIDRALEEDETNPYAYQLLKVALTH 120
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGLP 178
+ I + + + + G+ + G +D + S + V + +
Sbjct: 121 MERSDKARLIALLVSIKCMPLYGYVPNFKYSTYDGNMTHKDFIAYSFQFNSVVTQEALIE 180
Query: 179 YAEKMLVLPSFL 190
+ + L
Sbjct: 181 DPHAIPMTNKSL 192
>gi|330752341|emb|CBL87294.1| DNA repair protein [uncultured Sphingobacteria bacterium]
Length = 197
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 4/150 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRV---- 56
M + AI+L +Y E ++I ++ T++YG + + + + + +
Sbjct: 1 MIAKTKAIVLHNTNYSENSVISKMYTKEYGLRTYIIPSIRKGKSAIRPSMILALSLVELD 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ A + L L + + L+D L
Sbjct: 61 IYEKANASINRIKELRNSQLLVNIHSDIVKTSIALFLSEILNHCITFDQGDEYLFDFLQR 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGL 146
+ + + + L K++G
Sbjct: 121 EILILENEETNSLYPIFFLVNLSKHLGVQP 150
>gi|257453600|ref|ZP_05618890.1| DNA repair protein RecO [Enhydrobacter aerosaccus SK60]
gi|257449058|gb|EEV24011.1| DNA repair protein RecO [Enhydrobacter aerosaccus SK60]
Length = 251
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 22/196 (11%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
IL + YGE ++ + + ++G G + P+ + + +
Sbjct: 7 TGYILHQKPYGESRSLVYLFSEEWGVVHGI-----GKKNLPLFVP-----IQFFGNGKNS 56
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH---- 121
L F + + L+ G+ L + LP E E++ L
Sbjct: 57 LKTFSQSQILQN-HITLTGQSLYAGMYLNEILQKLLPVEESFAEIWQAYQQCLANMATLF 115
Query: 122 -------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + E +L + +G+G D K + + +
Sbjct: 116 VEPAQSSHDMIFLKWHLRRFENVLFEQLGYGFDFAKDALGDLIAPSQRYQYQLQQGFMPV 175
Query: 175 VGLPYAEKMLVLPSFL 190
+ L + + L
Sbjct: 176 LPLDKPDMAITGEQLL 191
>gi|225018644|ref|ZP_03707836.1| hypothetical protein CLOSTMETH_02594 [Clostridium methylpentosum
DSM 5476]
gi|224948552|gb|EEG29761.1| hypothetical protein CLOSTMETH_02594 [Clostridium methylpentosum
DSM 5476]
Length = 263
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 2/189 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + +IL RSY + L ++TR G +R + G L +
Sbjct: 1 MIIKTEGMILSQRSYRDSEKFLTILTRDQGVIEAKLRQFGQIKRSQFNLIGPLGYFRFDL 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY--DMLNIFL 118
+ + L L L + L +Y +LN
Sbjct: 61 FVLKQRYTVDAAEKIEDFFPLRYDVEKLALAGYFCELTQSLASPREDAWVYLRLLLNTLA 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K + EL L GF DL C + G + S LP
Sbjct: 121 LLEKDRRSPAFLKAVFELRALSLGGFMPDLVCCKHCCQFEGKKLYFLPFAGTLVCSDCLP 180
Query: 179 YAEKMLVLP 187
+ + L
Sbjct: 181 GSPENNQLH 189
>gi|257468593|ref|ZP_05632687.1| DNA repair protein recO [Fusobacterium ulcerans ATCC 49185]
gi|317062850|ref|ZP_07927335.1| DNA repair protein recO [Fusobacterium ulcerans ATCC 49185]
gi|313688526|gb|EFS25361.1| DNA repair protein recO [Fusobacterium ulcerans ATCC 49185]
Length = 237
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 11/222 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ + I++ + +GE + + + T +G+ V+ + + + L + +
Sbjct: 4 FDSNGIVINKKDFGEADRYITIFTETFGKVNVLVKGIRKSKKREQSSTDILALSKFTFYK 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++S + + GL L L + EL+ + LN
Sbjct: 64 KGENFI-LSNLTTIDSFSEIKENIDVLGIGLYITSILNSILVDNNRKKELFSLTLKSLNF 122
Query: 121 HKIPSVIGKIFVQIELMLLKN-----IGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
K + K ++ L K +GF C + LL + G S
Sbjct: 123 LKSSNDEKKNYILTAFYLFKVIKDEGLGFSTGEGYCFSFERSTFLL---EATEGFFKVSP 179
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
+ + E+ +K+ L + +LN +
Sbjct: 180 KEKDIIEKFLNDKVKSIIEEDYSIKEIKNVIFLFERYLNFHL 221
>gi|163784120|ref|ZP_02179065.1| Recombinational DNA repair protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159880611|gb|EDP74170.1| Recombinational DNA repair protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 230
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 17/229 (7%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+D+AI+L S G ++ + V T+ +G+ +++ GQ + P LQ N ++ +
Sbjct: 4 IKDEAIVLRSSSSGTNDLSITVFTKGFGKENIYIKGGQILKNMYLPKLQPFNWIKGVFVK 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + E + L + +F +LY +L L
Sbjct: 64 YKEKTFIKEIDENVNLSYPFTKDLDKLDTALWILHIFDKFTIFN--DEKLYSLLKNALYY 121
Query: 121 HKIPSVIGKIFVQ--IELMLLKNIGFGLDLTKCVVTGVT---QDLLWVSPKSGGAVCRSV 175
+ + + + G KCV GV ++ S K G++C+
Sbjct: 122 LQFTENKYLQTYKLTFLIKYIALYGILPSFNKCVKCGVKINRKNFQEFSFKKTGSLCKKC 181
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSL-KSAFQL-------TDYFLNKY 216
+ L + + + K + +L +
Sbjct: 182 SKNKKTDLSYEELVLTAKLLKLKFKDINKQGLIISPVLIKKFQDYLENH 230
>gi|34541600|ref|NP_906079.1| DNA repair protein RecO [Porphyromonas gingivalis W83]
gi|81572004|sp|Q7MTF5|RECO_PORGI RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|34397917|gb|AAQ66978.1| DNA repair protein RecO, putative [Porphyromonas gingivalis W83]
Length = 245
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 7/155 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV-----RNGQSHRMQPILQAGNLVR 55
M AI+L +Y + I + +R+ GR + R ++ ++ N +
Sbjct: 1 MIIVSRAIVLHNTAYNDSYSIAHLFSRESGRVSYLIPRSSKRGKSGGSLRLLISPLNELE 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDML 114
+ + ++L + L S ++ S + L L+ L E LYD +
Sbjct: 61 ITAEHKQHRDLHFIKEAKLCSLHGRIQSDPVRNSIALFLAEFLYLILRLPEADTNLYDFV 120
Query: 115 NIFLNCH-KIPSVIGKIFVQIELMLLKNIGFGLDL 148
++ ++ + + LL +G DL
Sbjct: 121 AFSIDKLEEMDGPMANFHLAFLFRLLVPLGLIPDL 155
>gi|206901957|ref|YP_002251034.1| DNA repair protein RecO [Dictyoglomus thermophilum H-6-12]
gi|206741060|gb|ACI20118.1| DNA repair protein RecO [Dictyoglomus thermophilum H-6-12]
Length = 236
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 17/225 (7%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
++ IIL + GE +++L + ++ G+ + + + + ++ R ++ R
Sbjct: 10 EEGIILFKKKIGEGDLLLTIYGKEKGKFFAIAKGALKIKNRLRGKVSIFSVGRGHFVKRR 69
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+L + L F+ I +F+P L +Y FL
Sbjct: 70 EVDLLISWESYEK-FLEILEDVDKFILISDYIRRADKFIPLEVKDLVIYSYFYDFLK--S 126
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLT----KCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + + LL+ +G+ L KCV D ++ + + C
Sbjct: 127 WRLIDRYLGDVFLIKLLQRLGYMGKLELKCKKCVKDLSKNDYMYFNLRDNVVYCEECKDI 186
Query: 179 YAEKMLVLPSFLWKEEQTIDADSL--------KSAFQLTDYFLNK 215
+ K+ + + E D + L + +
Sbjct: 187 GSVKVDLREVMEFNEILDKTFDEIVREKYINSLDNLNLIGRMIER 231
>gi|78357078|ref|YP_388527.1| DNA repair protein RecO [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|123552271|sp|Q30ZR4|RECO_DESDG RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78219483|gb|ABB38832.1| DNA replication and repair protein RecO [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 248
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 4/159 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + + A++L + E ++ + ++ G F G R + L A N V V
Sbjct: 1 MDFTEKALVLRTGRFREADLWVRFLSPSRGVITAFAFGGCRSRRRFCGCLDALNHVLVKV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
S + L + +L S I + E + YD+
Sbjct: 61 SSDKRRTYLCLDEGTLLNGPVRLRSDWGRTGVAANCIKFVEAMGVGPEGAADAYDLTCGM 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTG 155
L + V+ +IF L + G+ +D +C G
Sbjct: 121 LELLETADVVPEIFPVLFRGRLAFDQGYRIDPVRCARCG 159
>gi|154484524|ref|ZP_02026972.1| hypothetical protein EUBVEN_02238 [Eubacterium ventriosum ATCC
27560]
gi|149734372|gb|EDM50289.1| hypothetical protein EUBVEN_02238 [Eubacterium ventriosum ATCC
27560]
Length = 231
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 2/175 (1%)
Query: 15 YGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVL 74
E + L ++T+++G+ F R + Q + + + + +N +
Sbjct: 3 ISEYDKRLVLLTKEFGKITAFARGARKTTSQFLAGSQPMAFGEFTLYRGRNAYTVTSMKI 62
Query: 75 ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM--LNIFLNCHKIPSVIGKIFV 132
+ + + +Y + L + K I
Sbjct: 63 SDYFSSDMKDIDSMYMGMYFLELADYYGREGIEAGETLKLLYMSMKALSKNMLKKELIRC 122
Query: 133 QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
EL +L G ++ C G ++L + K+ +C + EK ++
Sbjct: 123 IFELRILVINGEYPNVFTCGNCGEKENLDYFDEKNSTMICSNCHGKVPEKNIIDN 177
>gi|188995818|ref|YP_001930070.1| probable DNA repair protein RecO [Porphyromonas gingivalis ATCC
33277]
gi|254764654|sp|B2RM78|RECO_PORG3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|188595498|dbj|BAG34473.1| probable DNA repair protein RecO [Porphyromonas gingivalis ATCC
33277]
Length = 245
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 7/155 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV-----RNGQSHRMQPILQAGNLVR 55
M AI+L +Y + I + +R+ GR + R ++ ++ N +
Sbjct: 1 MIIVSRAIVLHNTAYNDSYSIAHLFSRESGRVSYLIPRSSKRGKSGGSLRLLISPLNELE 60
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDML 114
+ + ++L + L S ++ S + L L+ L E LYD +
Sbjct: 61 ITAEHKQHRDLHFIKEAKLCSLHGRIQSDPVRNSIALFLAEFLYLILRLPEADTNLYDFV 120
Query: 115 NIFLNCH-KIPSVIGKIFVQIELMLLKNIGFGLDL 148
++ ++ + + LL +G DL
Sbjct: 121 AFSIDKLEEMDGPMANFHLAFLFRLLVPLGLIPDL 155
>gi|323466384|gb|ADX70071.1| DNA repair protein recO [Lactobacillus helveticus H10]
Length = 228
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 2/171 (1%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN--LGEFRFEVLESH 77
++ ++MT+Q G V+ + Q N + + + ++ ++
Sbjct: 1 MLAKIMTKQDGIITLIVKGALRPKSQLSAATLNFSMGTYVIYTSGHGLSNLRTYKEVKQF 60
Query: 78 CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELM 137
+ Y + E +P + YD+ L I +++
Sbjct: 61 DGLYRDLTKNAYTSFIFDLIDHAFVEYQPLGKYYDLAVFALKKIDAGVDNEMITQIVQMK 120
Query: 138 LLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS 188
+L G +L CV+ G + + S K GG VC ++ + P
Sbjct: 121 MLSAFGVEPELRHCVICGKERGVFDYSIKLGGIVCSDHFAKVNSRLHLTPK 171
>gi|46445974|ref|YP_007339.1| DNA repair protein RecO [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399615|emb|CAF23064.1| hypothetical protein pc0340 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 231
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 5/204 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNWRSR 61
+ IIL V + + + IL + T++ G + ++ + + V + ++ +
Sbjct: 7 TAEGIILKVIPFRDYDQILAIFTKEAGLIKVLCKKSRNKKGGAKSHYTPLTKVELVYKEQ 66
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ +L+ + S I L++ +P L+ + I+L
Sbjct: 67 KGEIFNCHEISILDFYRHLRTELSHLNAACDIIQLLYQTQLVGKPAPRLFTLTEIYLKKI 126
Query: 122 KIPSVIGKIFVQIELMLLK---NIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L LLK + L + C+ + +
Sbjct: 127 PQTQFPDILTTSFRLKLLKHEGILAHPLVCSVCLQPLHQEAFFFRGEVFCRLHYPMGASH 186
Query: 179 YAEKMLVLPSFLWKEEQTIDADSL 202
E + + L + + +
Sbjct: 187 LRENEINVLYQLLNCKNYQELTEI 210
>gi|300775773|ref|ZP_07085634.1| recombination protein O [Chryseobacterium gleum ATCC 35910]
gi|300505800|gb|EFK36937.1| recombination protein O [Chryseobacterium gleum ATCC 35910]
Length = 228
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 4/146 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRN--GQSHRMQPILQAGNLVRVNWRSRLAQ 64
+L YGE + +L T + G F++ + ++ + +LQ + + +
Sbjct: 6 GFLLSFIKYGENDAVLHCFTEEEGFQSYFLKGIYAKRNKKKALLQPLSQLNFSVNPSRGN 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ L + + L L + +Y ++ F++
Sbjct: 66 GIPSVSKFELVKNNDIYTDIKVNTVIFFISDFLSHILKYENKNIPIYSGIDDFVSELTNK 125
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTK 150
+ + L +LK G L++
Sbjct: 126 NYQAHL--LFLLAILKIQGVAPLLSE 149
>gi|139439610|ref|ZP_01773023.1| Hypothetical protein COLAER_02050 [Collinsella aerofaciens ATCC
25986]
gi|133774951|gb|EBA38771.1| Hypothetical protein COLAER_02050 [Collinsella aerofaciens ATCC
25986]
Length = 249
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 58/188 (30%), Gaps = 9/188 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQSH--RMQPILQAGNLVRVNWR 59
++ ++L E ++IL ++ + GR + + R+ + V +
Sbjct: 7 YRTKVLVLDKTKLKETDLILTML-DERGRQVRAVAKGARKPGGRLAARCELFCTVDMLLA 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ + A E + + L
Sbjct: 66 HGRSLDVVSQAELMEAPLGAA-PDYETTCAASAIAEVARVCSFEDAEDPFTFAITQRALT 124
Query: 120 CH---KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ + + LL ++G+ D + CV+ G L + SP++GG +C S
Sbjct: 125 LVGSGLDSAHMDLLVAAFVFKLLSHVGYRPDFSACVLCGDPM-LSYFSPQAGGLMCGSCA 183
Query: 177 LPYAEKML 184
L
Sbjct: 184 SSVPGAEL 191
>gi|93005199|ref|YP_579636.1| recombination protein O, RecO [Psychrobacter cryohalolentis K5]
gi|92392877|gb|ABE74152.1| DNA replication and repair protein RecO [Psychrobacter
cryohalolentis K5]
Length = 254
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 22/200 (11%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVR--------------NGQSHRMQPILQAGN 52
+L R Y EK + + ++Q+G G + + + + +
Sbjct: 8 GYLLHQRPYQEKRALYYLFSQQHGVIHGIGKKGAPLFMPLQLFATGKRDLKTFSQINIAS 67
Query: 53 LVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYD 112
V+ ++ N ES L L+R LP +P L+
Sbjct: 68 FSSVHTQAVQDDNAANVDIRHQESIT-----GQHQYAALYLNEILWRLLPTEDPMPILWQ 122
Query: 113 MLNIFLNCHKIPSVIGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
L+ K P ++ Q E L +GF L L + + +
Sbjct: 123 HYQNSLDALKKPLTADELRLCLRQFESYLFNELGFSLTLHQDSLENPIEPEQVYRFLPDM 182
Query: 170 AVCRSVGLPYAEKMLVLPSF 189
+ ++ E M+ F
Sbjct: 183 GLVPTLHTEDVESMVGHAVF 202
>gi|94984962|ref|YP_604326.1| DNA repair protein RecO [Deinococcus geothermalis DSM 11300]
gi|94555243|gb|ABF45157.1| DNA repair protein RecO [Deinococcus geothermalis DSM 11300]
Length = 243
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 5/151 (3%)
Query: 7 AIILGVR--SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
I++ R G +II+ ++T G+ R G + L + V +
Sbjct: 10 GIVIRRRVTPAG--DIIVTLLTP-QGKVKAIARGGVRGALSSRLNLFHHVAIQLYQTPQA 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L + VLE KL + + E E + +++ L
Sbjct: 67 DLATVQQTVLEGALPKLAEPERYAFAHLMAELADALFQEGEFSEQAFELFAGALRGISHQ 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + LL GF +C G
Sbjct: 127 PDPEWVALVMSYKLLGLAGFVPQTGRCARCG 157
>gi|187734828|ref|YP_001876940.1| Recombination protein O RecO [Akkermansia muciniphila ATCC BAA-835]
gi|187424880|gb|ACD04159.1| Recombination protein O RecO [Akkermansia muciniphila ATCC BAA-835]
Length = 178
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 6/148 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW 58
M +A +L + GE +I T + G ++ + L R+ W
Sbjct: 1 MN--AEATVLKLYPLGENGLIAVWCTEE-GLIRTAAKSARKPGSPFAGCLDIFYQCRMQW 57
Query: 59 -RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+++ ++L A S + L P E YD+L
Sbjct: 58 TQAKKGDLHTLTSADLLSPRLALRKSYLRLSAAGYFARLFLQMLEPDTPIPEFYDLLQRA 117
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFG 145
+ + + E L + G
Sbjct: 118 YTYLENNDPTLRAVLHFEQELARLHGIA 145
>gi|260551501|ref|ZP_05825685.1| DNA repair protein RecO [Acinetobacter sp. RUH2624]
gi|260405495|gb|EEW98988.1| DNA repair protein RecO [Acinetobacter sp. RUH2624]
Length = 237
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 25/240 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P EP + ++ + L + S
Sbjct: 61 N---FTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEPMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVT--QDLLWVSPKSGGAVCRSVG 176
+I Q E +LL +G+ +D + G A G
Sbjct: 118 SHENPDLFLRQILRQFEHILLPELGYAIDFSVDSSQKEILPNQFYQFQVTEGFAPVVQAG 177
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
+L +++ Q + QL L + + + R+ ++
Sbjct: 178 RSSLSGKAILSMLDYEQGQDFSHEQ----LQLLGK-LYRQMITSLLGDRPLKSRQLWIQN 232
>gi|229815235|ref|ZP_04445571.1| hypothetical protein COLINT_02281 [Collinsella intestinalis DSM
13280]
gi|229809245|gb|EEP45011.1| hypothetical protein COLINT_02281 [Collinsella intestinalis DSM
13280]
Length = 248
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 8/182 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
++ AI+L E ++IL + Q GR + + R+ + V +
Sbjct: 7 YRTKAIVLDKTKLKETDLILT-LVDQAGRQVRAVAKGARKPGSRLAARCELCCEVDLLLA 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ V ++ S L + E ++ + L
Sbjct: 66 HGRSLDIVSQAELVAAPLGSQ-PSYELLMSASAVAEVARHCTYEDAEDPFVFAITRAVLA 124
Query: 120 CHK--IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ I LL +IG+ D + CV + + S +GG +C S
Sbjct: 125 QLASLDAPHLDLIVAAYVFKLLSHIGYLPDCSSCVACED-EAPTYFSAHAGGLLCASCAS 183
Query: 178 PY 179
Sbjct: 184 SV 185
>gi|303245473|ref|ZP_07331757.1| DNA repair protein RecO [Desulfovibrio fructosovorans JJ]
gi|302493322|gb|EFL53184.1| DNA repair protein RecO [Desulfovibrio fructosovorans JJ]
Length = 249
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 6/192 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + A++L V + E + + + + G + F G R + + L V ++
Sbjct: 1 MEFSEQALVLKVGRFREIDAWVRLFSPVRGGYTAFAFGGMKSRRRFLGCLDPLNHVRFKV 60
Query: 61 RLAQNLGEFRFEV---LESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNI 116
R + G L++ + + + + + +
Sbjct: 61 RRSGRGGYHCLTEARLLDAPTNLRHDPPRLGMAINCLKFFEAVHIGPQGAADAYALLRAM 120
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT--QDLLWVSPKSGGAVCRS 174
+ + L G +C V G D ++G C
Sbjct: 121 LAALENASAPAALFPLFFRARLATLHGTFPVCDRCAVCGRPFGDDEAVCHVEAGRLTCPD 180
Query: 175 VGLPYAEKMLVL 186
+
Sbjct: 181 CRRGGDHGVRQH 192
>gi|22299777|ref|NP_683024.1| DNA repair protein RecO [Thermosynechococcus elongatus BP-1]
gi|81742410|sp|Q8DGS9|RECO_THEEB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|22295961|dbj|BAC09786.1| tlr2234 [Thermosynechococcus elongatus BP-1]
Length = 279
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 5/159 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
++ I L GE + +L V +R G + + R + + + + + S
Sbjct: 5 YRTIGINLKAMPLGESDRLLSVFSRDRGLLKLVAPHSRGSRSRLGGRVDLFVVNDL-FIS 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ E + ++ + + + ++P EL+D L+
Sbjct: 64 PGRNLDRILQAETVATYQGLHHQLTTLTAAQYLGEVVLYQIHPQQPQPELFDWFCATLDQ 123
Query: 121 HKIPSVIGKIFVQI--ELMLLKNIGFGLDLTKCVVTGVT 157
+ S + + + +L+ G + +C +G
Sbjct: 124 LQGASSRAALAILVRGLCGILRLGGIAPEWYQCHESGCK 162
>gi|169839804|ref|ZP_02872992.1| recombination protein RecO [candidate division TM7 single-cell
isolate TM7a]
Length = 162
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
+AI+L +YGE + I++ T GR R + R + ++ +L +V R
Sbjct: 31 TTEAIVLRRTNYGEADRIIQFSTP-LGRRSAMARGVRKSRSKLAGGVELLSLSQVVLRHG 89
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + +++ + +L + L + + + E + +L L
Sbjct: 90 RGEISTLVQARMIKFYKN-ILDNYDKLQFAYEAMKMVAYSSEIIDEPGWFSILKETLEAL 148
Query: 122 KIPSVIGKIFVQI 134
+I
Sbjct: 149 DNKRLICTNKTWF 161
>gi|326336333|ref|ZP_08202504.1| DNA repair protein [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691507|gb|EGD33475.1| DNA repair protein [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 236
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 9/229 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ----PILQAGNLVRVNW 58
AI+L + E ++I+ T + G ++ + + + + + +
Sbjct: 2 IHTKAIVLSHLKFQETSLIVRCYTLE-GVRSYLLKGVLVPKKKAITPAYFEPLSQLELIT 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGL-QSIVPLFRFLPEREPCLELYDMLNIF 117
R L + + KL S + L L E P L L+
Sbjct: 61 TERNDGTLEYIKEVKINYPYKKLHQSVIRSSVLFFLAEIGSSVLKEEHPNLPLFSFWEES 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L + ++ + L +G + + + + G +
Sbjct: 121 LQWYDQAESFTNFHLKFLVDLTLYLGVLPNTSAMELPYFDLEAGVFVSVHNGHFLMNEKE 180
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAF-QLTDYFLNKYALQHNIIHC 225
K + S + + + QL +Y+ ++ L I
Sbjct: 181 SLLLKFFLTHSMEEISQLKMSREERNDLLEQLLNYY--RWHLPAFKIPH 227
>gi|237743925|ref|ZP_04574406.1| DNA repair protein recO [Fusobacterium sp. 7_1]
gi|229432956|gb|EEO43168.1| DNA repair protein recO [Fusobacterium sp. 7_1]
Length = 233
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 18/226 (7%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + I++ R E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIVISKRDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEVLEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELML----------------LKNIGFGLDLTKCVVTGVTQDLLW 162
N + + K ++ I L ++ + + + V +
Sbjct: 121 NYLDVSNDERKNYLLILYFLYIIIKEEGISIENDNDMEELQVEVQTQRKVEIDDNVKKIL 180
Query: 163 VSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
Y + + + + D+ +A ++
Sbjct: 181 QYLFENNLKVVINDEKYKVDYIKKAILVLENYINFNLDTNINAKKI 226
>gi|332297730|ref|YP_004439652.1| DNA repair protein recO [Treponema brennaborense DSM 12168]
gi|332180833|gb|AEE16521.1| DNA repair protein recO [Treponema brennaborense DSM 12168]
Length = 269
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 2/152 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A++L R GE N I+ +++ G + G+ +++ ++ + V + ++
Sbjct: 9 ALVLTSRQAGEDNRIITLLSPVLGVFDAMLYGGRKSKLRALVSPWHSGTVWLYTDESKKS 68
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ L + L + ++ FL+ + S
Sbjct: 69 IKITDFDPNVFRPSLRENLFKNMAASLATELAVKTKAAGEYGSCWTLVCAFLDGLEFSSE 128
Query: 127 IGKIFV--QIELMLLKNIGFGLDLTKCVVTGV 156
+ L +G D CV G
Sbjct: 129 AEGRTGLLRFLWRYLGLLGVKPDADCCVRCGS 160
>gi|302338651|ref|YP_003803857.1| DNA repair protein RecO [Spirochaeta smaragdinae DSM 11293]
gi|301635836|gb|ADK81263.1| DNA repair protein RecO [Spirochaeta smaragdinae DSM 11293]
Length = 257
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 5/160 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+Q DAI+L G+ + + ++ G + + ++
Sbjct: 15 FQTDAIVLRTFRVGDIHKGVTFLSSDSGLVDAVAYGAYKGKGKLGGSTDPFTWGHFYCYR 74
Query: 63 AQNLGEFRFEVLESHC---AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
G + +ES+ A S F + L+ +L L
Sbjct: 75 DPVRGRTKINDIESYSIFEAIRGDLSRFYIACYWAELILASFGAGGESSLLFPLLLEALT 134
Query: 120 CHKIPSVIGKIFVQIE--LMLLKNIGFGLDLTKCVVTGVT 157
+ V I+ L +G ++ +C G
Sbjct: 135 RLDTMQSEDRWHVFIQFGWRFLGLLGVRSEVEECASCGHV 174
>gi|159029991|emb|CAO90370.1| recO [Microcystis aeruginosa PCC 7806]
Length = 259
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 6/154 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+Q I L ++GE + +L ++T +YG + ++ + + + + +
Sbjct: 5 YQATGINLQGMAFGEADRLLTILTAEYGLIRAIAPGARKYKSSLRGRSELFVVNNLLIVA 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
+ + +ES+ + + + +P ELY+++ L
Sbjct: 65 GKSLDKVVQAET-IESYPKLSQNLAKLTVSQYLCELVLAIALSEQPQRELYELICSHLAR 123
Query: 119 -NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
I Q L G + C
Sbjct: 124 IEVLDENQYILPYLCQAIFHFLIIAGLVPQVHNC 157
>gi|313897343|ref|ZP_07830886.1| DNA repair protein RecO [Clostridium sp. HGF2]
gi|312957713|gb|EFR39338.1| DNA repair protein RecO [Clostridium sp. HGF2]
Length = 246
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M + I++ V+ Y E + +L+V+ R + + P +Q L R+
Sbjct: 1 MQEEVCGILVDVKEYREHDALLKVLCEDGSLLSLSARGVRKVTSKNAPAVQLFTLARLQL 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ ++ R + + K+ + +Y +L L
Sbjct: 61 NYQQTASIQSLRRAEIINSYRKIREDLVKQSIASYFCECIYRSGFE---ENVYILLKQSL 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + +I + ++ + G + CV TQ + VS + GG +C+S
Sbjct: 118 DILQDAKHPLQILCLFQAVMNRMHGIEPFVDGCVRCQSTQHIQAVSRRDGGFICKSC 174
>gi|237736617|ref|ZP_04567098.1| DNA repair protein recO [Fusobacterium mortiferum ATCC 9817]
gi|229420479|gb|EEO35526.1| DNA repair protein recO [Fusobacterium mortiferum ATCC 9817]
Length = 238
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 3/122 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
D+ I++ R +GE + + V T +G+ + ++ + + + + L + +
Sbjct: 5 INDNGIVINKRDFGEADRYVSVFTENFGKLVFLLKGIRKSKKRELSSVDILTLSKFTFYR 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++S+ L + L L E LY++ LN
Sbjct: 65 KGENYTVSSF-NEVDSYLEIKSDLDNLGIALYILAILNEILVENNRKKSLYNITIKTLNY 123
Query: 121 HK 122
K
Sbjct: 124 LK 125
>gi|226356336|ref|YP_002786076.1| DNA repair protein RecO (Recombination protein O) [Deinococcus
deserti VCD115]
gi|226318326|gb|ACO46322.1| putative DNA repair protein RecO (Recombination protein O)
[Deinococcus deserti VCD115]
Length = 247
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 5/154 (3%)
Query: 7 AIILGVR--SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
I++ R G +II+ ++T G+ R G + L + V
Sbjct: 10 GIVIRRRVTPAG--DIIVTLLTP-QGKLKAVARGGVRGPLASRLNLFHHVATQIYQGPHN 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L + VLE +L + + E E + +D+ L
Sbjct: 67 DLASVKQAVLEGALPRLAEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAGALRGISHQ 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + LL G +C G
Sbjct: 127 PDPEWVALVMSYKLLGLAGMVPQTARCARCGQPD 160
>gi|88858202|ref|ZP_01132844.1| DNA repair protein recO (Recombination protein O)
[Pseudoalteromonas tunicata D2]
gi|88819819|gb|EAR29632.1| DNA repair protein recO (Recombination protein O)
[Pseudoalteromonas tunicata D2]
Length = 210
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 56/216 (25%), Gaps = 11/216 (5%)
Query: 21 ILEVMTRQYGRHLGFVR--NGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHC 78
+L+++ G+ R Q+ + LQ + + + +
Sbjct: 1 MLDMLVENLGQIRLLARLKGKQAVKHSAQLQPFQTLLIRFSGQGDLKYLTQFELASNI-A 59
Query: 79 AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELML 138
L+ G R +P EP Y + L + + E L
Sbjct: 60 DIQLAGKALYCGFYLNELCNRIIPINEPIDLAYQLYQQHLQALTTSCDVEQTLRSFEYQL 119
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTID 198
L+ +G+G+D + C+ + +
Sbjct: 120 LELLGYGVDFNYDAQGDPIEAAALYLYVDEQGWCKQ---NTTHSGFRGEQLMAFSQLDFS 176
Query: 199 ADSLKSAFQLTDYFLNKYALQHNIIHC-HLLRENFL 233
+L +Y L+ + RE FL
Sbjct: 177 QPQ----TRLLAKQFARYLLKPLLGERELKSRELFL 208
>gi|262278199|ref|ZP_06055984.1| recombinational DNA repair protein [Acinetobacter calcoaceticus
RUH2202]
gi|262258550|gb|EEY77283.1| recombinational DNA repair protein [Acinetobacter calcoaceticus
RUH2202]
Length = 237
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + +
Sbjct: 61 N---FTKLEILNQPVFFFGDAFFAGFYLSEIILRLCPLEEAMPQSFEQYQLTLLQLQQLA 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ LD + Q + +
Sbjct: 118 SNDQPDLFLRQILRQFEHVLLPELGYALDFSIDTQQQPIQSHQFYQFQ 165
>gi|325284038|ref|YP_004256579.1| DNA repair protein recO [Deinococcus proteolyticus MRP]
gi|324315847|gb|ADY26962.1| DNA repair protein recO [Deinococcus proteolyticus MRP]
Length = 253
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 4/155 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L + ++I+ ++T G+ R G + L + V + +R L
Sbjct: 22 GVVLRRWKTPKGDLIVSLLTP-QGKLRAIARGGLRGKHAGALNLFHHVGLQVYARPGDEL 80
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL---ELYDMLNIFLNCHKI 123
+ LE +L Y E E + +D+ L
Sbjct: 81 AVIQQASLEGALPRLALPERHPYAHLLAELADLLFQEGEADEYGQQAFDLFAGALRGVAH 140
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + LL GF C G
Sbjct: 141 HHDPEWVALVMSYKLLALAGFPQRTRMCARCGAAD 175
>gi|239501069|ref|ZP_04660379.1| DNA repair protein RecO [Acinetobacter baumannii AB900]
Length = 237
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ LD + + +
Sbjct: 118 SHENPDLFLRQILRQFEHILLAELGYALDFSIDSSQKEILPQQFYQFQ 165
>gi|313665393|ref|YP_004047264.1| DNA repair protein RecO [Mycoplasma leachii PG50]
gi|312949214|gb|ADR23810.1| DNA repair protein RecO [Mycoplasma leachii PG50]
Length = 249
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 66/211 (31%), Gaps = 6/211 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN--- 57
M I+L + + + I+ + + YG+ + + L N
Sbjct: 1 MEKTLKGIVLNSFDFRDYDKIITIYSNLYGKISLICLGVNKIKSKNKYAINYLSYSNFEI 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++++ L + + L + + + + L L + L+ +L +
Sbjct: 61 FKAKNKLGLSKLKRSELINSFNHIATDFNLYVYANVLTSLVMNLEDHIKNYNLFKILKLS 120
Query: 118 LNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ I LK IG ++LT C + + + C S
Sbjct: 121 IFLINNKPNISFKVCILFMFYFLKVIGNQINLTVCGFCNSKINPIIAISFTNY--CSSCK 178
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAFQ 207
Y + L++ + L ++ D ++
Sbjct: 179 FCYFDDCLIIDNQLKNFINSVVKDDFITSLN 209
>gi|72383569|ref|YP_292924.1| putative recombination protein O [Prochlorococcus marinus str.
NATL2A]
gi|72003419|gb|AAZ59221.1| DNA replication and repair protein RecO [Prochlorococcus marinus
str. NATL2A]
Length = 266
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 9/159 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ L V GE + +L +++ + G + + + + N + ++ +
Sbjct: 8 KGLSLKVGPLGESDRLLTILSEENGISRFAIPGARKPKSRLGATSPFNFLDLHIVGK-KN 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++L+S+ + + + +P +L ++ I LN
Sbjct: 67 LRRVTQIKILKSYGDLGRNIETLSAAQAISELIMVMVGNEDPQKDLLKLVLIHLNRLNDL 126
Query: 125 SVIGKIFVQIE-------LMLLKNIGFGLDLTKCVVTGV 156
++ + LL G+ L L C +G
Sbjct: 127 HKTEFNSLEALAISVQSCVHLLALGGYCLPLQNCCHSGS 165
>gi|166365593|ref|YP_001657866.1| DNA repair protein RecO [Microcystis aeruginosa NIES-843]
gi|166087966|dbj|BAG02674.1| DNA repair protein [Microcystis aeruginosa NIES-843]
Length = 260
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 6/154 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRS 60
+Q I L ++GE + +L ++T +YG + ++ + + + + +
Sbjct: 6 YQATGINLQGMTFGEADRLLTILTAEYGLIRAIAPGARKYKSSLRGRSELFVVNNLLIVA 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL-- 118
+ + +ES+ + + + +P ELY+++ L
Sbjct: 66 GKSLDKVVQAET-IESYPKLSQNLAKLTVSQYLCELVLAIALSEQPQRELYELICGHLAR 124
Query: 119 -NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
I Q L G + C
Sbjct: 125 IEVLDENQYILPYLCQAIFHFLIIAGLVPQVHNC 158
>gi|124025163|ref|YP_001014279.1| putative recombination protein O [Prochlorococcus marinus str.
NATL1A]
gi|123960231|gb|ABM75014.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. NATL1A]
Length = 259
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ L V GE + +L +++ + G + + + + NL+ ++ +
Sbjct: 2 KGLSLKVGPLGENDRLLTILSEESGISRLAIPGARKPKSRLGATSPFNLLDLHIVGKKDL 61
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++++S+ + + + +P +L ++ + LN
Sbjct: 62 KK-VTQIKIIKSYGNLGKNIETLSAAQAISELILIMVGNEDPQKDLLKLVLMHLNRLNEL 120
Query: 125 SVIGKIFVQIE-------LMLLKNIGFGLDLTKCVVTGVT 157
++ + LL G+ L L C +G
Sbjct: 121 HKTEFNSLEALAISVQSSIHLLALGGYCLPLQNCCHSGSK 160
>gi|258544194|ref|ZP_05704428.1| DNA repair protein RecO [Cardiobacterium hominis ATCC 15826]
gi|258520570|gb|EEV89429.1| DNA repair protein RecO [Cardiobacterium hominis ATCC 15826]
Length = 222
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSR 61
Q+ A L + Y E N ++++ + +G R Q R L++++ + +
Sbjct: 6 QEPAFALHRKPYKENNYLIDIFSLNFGLFRASARIQQKKTHRKTSNYAPFLLLQISGQRK 65
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L+ L LP +P ++
Sbjct: 66 GELASLWQAEVQYDFTP----RPARLLHAHYLNEILLGLLPPDDPAPTVFHQY-----LL 116
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ V Q E LL ++G ++
Sbjct: 117 ALQRVDALALRQFEYTLLTHLGLLPEVAHYAEFYRLD 153
>gi|71064911|ref|YP_263638.1| DNA replication and repair protein RecO [Psychrobacter arcticus
273-4]
gi|71037896|gb|AAZ18204.1| DNA replication and repair protein RecO [Psychrobacter arcticus
273-4]
Length = 254
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 22/200 (11%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLV------------ 54
+L R Y EK + + ++Q+G G + P+ L
Sbjct: 8 GYLLHQRPYQEKRALYYLFSQQHGVIHGI-----GKKGAPLFMPLQLFATGKRDLKTFSQ 62
Query: 55 --RVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYD 112
++ S E+ + ++ L L+R LP +P L+
Sbjct: 63 INIASFISAHQSAPQNDDAANAETRYQESITGQHQYAALYLNEILWRLLPTEDPMPILWQ 122
Query: 113 MLNIFLNCHKIPSVIGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
L K P ++ E L +GF L L + +
Sbjct: 123 HYQDSLYKLKKPLSADELRLCLRHFESYLFNELGFSLTLNQDSLENPIDSAQVYRFLPDV 182
Query: 170 AVCRSVGLPYAEKMLVLPSF 189
+ V +E ++ F
Sbjct: 183 GLMPIVHHEDSESLVRHTVF 202
>gi|160915034|ref|ZP_02077247.1| hypothetical protein EUBDOL_01042 [Eubacterium dolichum DSM 3991]
gi|158432833|gb|EDP11122.1| hypothetical protein EUBDOL_01042 [Eubacterium dolichum DSM 3991]
Length = 247
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 5/177 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M + AI++ R Y E + I++++ R Q + Q R
Sbjct: 1 MNSEYCAIVISYREYREHDAIIKLLDENGTISSLIARGVQKINSKNAAGCQQFTYGRYFV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R + L + + + + +L L
Sbjct: 61 NERQSTVLHSLCSAECLRTYRDIREDLYMQSIASYMCEVIEKSDFE---ENAFPLLKTML 117
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + ++ + G + CV G T+ + +S ++GG +C+S
Sbjct: 118 EHLSKKEQPFGVLCLFQAIVNRMHGIEPCVEGCVHCGTTKRIASISVQAGGFLCQSC 174
>gi|15805845|ref|NP_294543.1| hypothetical protein DR_0819 [Deinococcus radiodurans R1]
gi|56554135|pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
gi|56554136|pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
gi|61680145|pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
gi|61680146|pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
gi|151568117|pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
Insight Into Its Role In Dna Repair
gi|6458540|gb|AAF10403.1|AE001936_12 hypothetical protein DR_0819 [Deinococcus radiodurans R1]
Length = 244
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 5/154 (3%)
Query: 7 AIILGVR--SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
I++ R G +II+ ++T G+ R G + L + V V
Sbjct: 10 GIVIRRRVTPAG--DIIVTLLTP-QGKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHN 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L + VLE L + + E E + +D+ L
Sbjct: 67 DLASVKQAVLEGALPTLAEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAASLRGVAHQ 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + LL G +C G
Sbjct: 127 PDPEWVALVMSYKLLGLAGVIPQTARCARCGAPD 160
>gi|118497828|ref|YP_898878.1| RecFOR complex, RecO component [Francisella tularensis subsp.
novicida U112]
gi|194323801|ref|ZP_03057577.1| DNA repair protein RecO [Francisella tularensis subsp. novicida
FTE]
gi|254764633|sp|A0Q7A9|RECO_FRATN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|118423734|gb|ABK90124.1| RecFOR complex, RecO component [Francisella novicida U112]
gi|194322165|gb|EDX19647.1| DNA repair protein RecO [Francisella tularensis subsp. novicida
FTE]
Length = 232
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 69/230 (30%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R +
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINLAKKADSL 65
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ + + L ++ L L+D + L +
Sbjct: 66 SKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDVLFDKYDFILRNIDEANYR 125
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ + +L ++G G+ + + Q+ G
Sbjct: 126 YLLRLFELELL-NSLGQGIYVDSDIDGMSIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSDDDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|260556585|ref|ZP_05828803.1| DNA repair protein RecO [Acinetobacter baumannii ATCC 19606]
gi|260409844|gb|EEX03144.1| DNA repair protein RecO [Acinetobacter baumannii ATCC 19606]
Length = 237
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 118 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 165
>gi|167772056|ref|ZP_02444109.1| hypothetical protein ANACOL_03430 [Anaerotruncus colihominis DSM
17241]
gi|167665854|gb|EDS09984.1| hypothetical protein ANACOL_03430 [Anaerotruncus colihominis DSM
17241]
Length = 230
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 2/146 (1%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLE-SHCA 79
+L ++T++ G + R + R + L + + LE
Sbjct: 1 MLTLLTKERGVISAYARGAKKPRGTLRVPTELLSYSCFVLFSNKERYSVDRADLEGVFMG 60
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV-IGKIFVQIELML 138
P E E +L L I EL L
Sbjct: 61 VRGDVCKLSLASYLCELTAETAPRGESAGEYLRLLLNSLYMLDRDKRACAFIKPLYELRL 120
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVS 164
L G+ +L C G + L
Sbjct: 121 LTMAGYMPNLVACRGCGCFESELIYF 146
>gi|294784881|ref|ZP_06750169.1| DNA repair protein RecO [Fusobacterium sp. 3_1_27]
gi|294486595|gb|EFG33957.1| DNA repair protein RecO [Fusobacterium sp. 3_1_27]
Length = 233
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 4/224 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDTLSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEILEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + K ++ I L I + + L
Sbjct: 121 DYLNSSNDERKNYLLILYFLYIIIKEEGIFVE--DGTNIEGLQIEVQAKRKVEIDKNVKK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ + + ++ D +K A + + ++N +
Sbjct: 179 ILKYLFEDNLKVVINDEKYKIDYVKKAILVLENYINFNLDININ 222
>gi|193078013|gb|ABO12934.2| DNA repair protein [Acinetobacter baumannii ATCC 17978]
Length = 236
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 7 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 59
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 60 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 116
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 117 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 164
>gi|15894578|ref|NP_347927.1| DNA repair protein RecO [Clostridium acetobutylicum ATCC 824]
gi|15024225|gb|AAK79267.1|AE007641_13 Hypothetical protein CA_C1309 [Clostridium acetobutylicum ATCC 824]
Length = 218
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 9/217 (4%)
Query: 30 GRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQNLGEFRFEVLESHCAKLLSSSLFL 88
G+ R + +R + + N N+ + E+++S L
Sbjct: 2 GKISVIARGAKKNRSKYLPITINFCFGNFVFFKGKSMFSLNEGEIIDSFQEFLSDFDTLT 61
Query: 89 YGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELMLLKNIGFGLD 147
Y + + E E +L+ K I + EL LL+ G+ L+
Sbjct: 62 YCSYLCELIDISMAEGESNRDLFKEFVSTFYLIKNKVGDIETLSRAFELKLLRYTGYNLN 121
Query: 148 LTKCVVTGVTQDLLWVSPKSGGAV-----CRSVGLPYAEKMLVLPSFLWK-EEQTIDADS 201
L C + + G+ ++L K + + +
Sbjct: 122 LDYCSKCKKRINSASYISYKYYGGICGDCSKEGGMSVTPAAYSSLNYLSKLPIEKVYRVN 181
Query: 202 LKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLE 238
L + + + + + N + L + E
Sbjct: 182 LNDNIKNEMFEILRGFISQNYAKIPKS-LDLLNIIKE 217
>gi|169795099|ref|YP_001712892.1| DNA repair protein [Acinetobacter baumannii AYE]
gi|169148026|emb|CAM85889.1| DNA repair protein [Acinetobacter baumannii AYE]
Length = 236
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 7 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 59
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 60 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 116
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 117 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 164
>gi|282899614|ref|ZP_06307578.1| Recombination protein O, RecO [Cylindrospermopsis raciborskii
CS-505]
gi|281195493|gb|EFA70426.1| Recombination protein O, RecO [Cylindrospermopsis raciborskii
CS-505]
Length = 298
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM----QPILQAGNLVRVNWRSR 61
I L + GE + IL V+TR+ G + ++ + + N + ++
Sbjct: 8 RGINLKSQFLGESDKILTVLTRELGLIKAIAPGSRKYQSSLNGRSGIFTVNELLISLGKS 67
Query: 62 L----AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + L+++ S E +ELYD+LN
Sbjct: 68 NPTQTSNLYKINQAQTLKTYPGLTKSLGKLAASQYLAEIALHQALEEHTQVELYDLLNQH 127
Query: 118 LNCHKIPSVIGKIFVQIE-----LMLLKNIGFGLDLTKCV 152
L+ I +I + +LK G + C
Sbjct: 128 LDTLDSLPPIPQIAIVAHLAKGVFDMLKLAGISPQIQVCC 167
>gi|257063886|ref|YP_003143558.1| DNA repair protein RecO [Slackia heliotrinireducens DSM 20476]
gi|256791539|gb|ACV22209.1| DNA repair protein RecO [Slackia heliotrinireducens DSM 20476]
Length = 257
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 7/161 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQSHRMQPILQAGNLVRVN-WRSRLA 63
A+++ GE ++I+ ++ GR + + + V+
Sbjct: 9 HALVVRKTKLGETDLIVTLL-ADDGRLLRAVAKGARKPTSTFSSRIELFSVVDALLVEGR 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+++++ S + +L+ L
Sbjct: 68 NLDILKEARLVDANLGIRESMERAAAASPILELAGIIAQPELVHPKLFSCTVAGLKA-AC 126
Query: 124 PSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLL 161
+ + LLK GF +CV G DL
Sbjct: 127 DADPAQTLSLSAACLLKVFSFAGFRPSFNECVKCGSKIDLS 167
>gi|213158239|ref|YP_002320290.1| DNA repair protein RecO [Acinetobacter baumannii AB0057]
gi|215482648|ref|YP_002324842.1| DNA repair protein RecO [Acinetobacter baumannii AB307-0294]
gi|301345821|ref|ZP_07226562.1| DNA repair protein RecO [Acinetobacter baumannii AB056]
gi|301594767|ref|ZP_07239775.1| DNA repair protein RecO [Acinetobacter baumannii AB059]
gi|332851052|ref|ZP_08433161.1| DNA repair protein RecO [Acinetobacter baumannii 6013150]
gi|332869699|ref|ZP_08438887.1| DNA repair protein RecO [Acinetobacter baumannii 6013113]
gi|213057399|gb|ACJ42301.1| DNA repair protein RecO [Acinetobacter baumannii AB0057]
gi|213988028|gb|ACJ58327.1| DNA repair protein RecO [Acinetobacter baumannii AB307-0294]
gi|332730216|gb|EGJ61541.1| DNA repair protein RecO [Acinetobacter baumannii 6013150]
gi|332732601|gb|EGJ63834.1| DNA repair protein RecO [Acinetobacter baumannii 6013113]
Length = 237
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 118 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 165
>gi|254374639|ref|ZP_04990120.1| hypothetical protein FTDG_00813 [Francisella novicida GA99-3548]
gi|151572358|gb|EDN38012.1| hypothetical protein FTDG_00813 [Francisella novicida GA99-3548]
Length = 232
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 8/230 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
IL R Y E ++++ V TR++G+ + + + + Q +R + G
Sbjct: 8 YILHQRKYRENSLLVSVFTREFGKLSALI--AINKKTTNLYQPLVKLRGQINL-AKKADG 64
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ +E + + + L LQ I L L ++ F+ + +
Sbjct: 65 LSKIYNIEFVESFYQKTYINLLSLQYINELIYLLLNYSHEEDILFDKYDFILRNIDEANY 124
Query: 128 GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLP 187
+ EL LL ++G G+ + + + Q+ G
Sbjct: 125 RHLLRLFELELLNSLGQGIYVDSDIDGMLIQNDCNYIILPNGFRKDFS-FAVNSISGSSL 183
Query: 188 SFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLL 237
+ + + D LK+ ++T ++ Y L R+ + L
Sbjct: 184 KKINQPLSSWSDDDLKAISRVTRVCVD-YVLA---GKQLKSRKLLVDYLN 229
>gi|260495178|ref|ZP_05815306.1| DNA repair protein RecO [Fusobacterium sp. 3_1_33]
gi|260197235|gb|EEW94754.1| DNA repair protein RecO [Fusobacterium sp. 3_1_33]
Length = 233
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 4/227 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + + I++ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGNGIVISKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEVLEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
N + + K ++ I L I ++L
Sbjct: 121 NYLDVSNDERKNYLLILYFLYIIIKEEGI--SIENNNDMEELQVEVQTQRKVEIDDNVKK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
E + + ++ D +K A + + ++N +
Sbjct: 179 ILEYLFKDNLKVVINDEKYKIDYIKKAILVLENYINFNLDTNINAKK 225
>gi|282898320|ref|ZP_06306311.1| Recombination protein O, RecO [Raphidiopsis brookii D9]
gi|281196851|gb|EFA71756.1| Recombination protein O, RecO [Raphidiopsis brookii D9]
Length = 298
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 15/167 (8%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRV 56
M +Q I L GE + IL V+TR+ G + + + +
Sbjct: 1 MNGSYQVRGINLKSHFLGESDKILTVLTRELGLIKAIAPGARKYQSNLNGRSGIFMVNEL 60
Query: 57 NWRSRLAQNLG------EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL 110
+ + + L++H S E P +EL
Sbjct: 61 LISPGKSNPTQTSGLYRINQAQTLKTHAGLSKSLGKLAASQYLAEIALHQALEEHPQIEL 120
Query: 111 YDMLNIFLNCHKIPSVIGKIFVQIE-----LMLLKNIGFGLDLTKCV 152
YD+LN L+ +I +I + +L G + C
Sbjct: 121 YDLLNQHLDTLDSLPLIPQIAIVAHLAKGVFDMLNLAGISPQIQLCC 167
>gi|34762478|ref|ZP_00143477.1| DNA repair protein recO [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|237742600|ref|ZP_04573081.1| DNA repair protein recO [Fusobacterium sp. 4_1_13]
gi|27887877|gb|EAA24946.1| DNA repair protein recO [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|229430248|gb|EEO40460.1| DNA repair protein recO [Fusobacterium sp. 4_1_13]
Length = 233
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 4/224 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEILEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + K ++ I L I + + L
Sbjct: 121 DYLNSSNDERKNYLLILYFLYIIIKEEGIFVE--DGTNIEGLQIEVQAKRKVEIDKNVKK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ + + ++ D +K A + + ++N +
Sbjct: 179 ILKYLFEDNLKVVINDEKYKIDYVKKAILVLENYINFNLDININ 222
>gi|256845995|ref|ZP_05551453.1| DNA repair protein RecO [Fusobacterium sp. 3_1_36A2]
gi|256719554|gb|EEU33109.1| DNA repair protein RecO [Fusobacterium sp. 3_1_36A2]
Length = 233
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 4/224 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEILEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + K ++ I L I + + L
Sbjct: 121 DYLNNSNDERKNYLLILYFLYIIIKEEGIFVE--DGTNIEGLQIEVQAKRKVEIDKNVKK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ + + ++ D +K A + + ++N +
Sbjct: 179 ILKYLFEDNLKVVINDEKYKIDYVKKAILVLENYINFNLDININ 222
>gi|301511104|ref|ZP_07236341.1| DNA repair protein RecO [Acinetobacter baumannii AB058]
Length = 237
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 118 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 165
>gi|184159113|ref|YP_001847452.1| recombinational DNA repair protein (RecF pathway) [Acinetobacter
baumannii ACICU]
gi|332875942|ref|ZP_08443728.1| DNA repair protein RecO [Acinetobacter baumannii 6014059]
gi|183210707|gb|ACC58105.1| Recombinational DNA repair protein (RecF pathway) [Acinetobacter
baumannii ACICU]
gi|332735808|gb|EGJ66849.1| DNA repair protein RecO [Acinetobacter baumannii 6014059]
Length = 237
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ + F G + R P E + ++ + L + S
Sbjct: 61 ---NFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + + +
Sbjct: 118 SHENPDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEILSQQFYQFQ 165
>gi|256027465|ref|ZP_05441299.1| DNA repair protein recO [Fusobacterium sp. D11]
gi|289765427|ref|ZP_06524805.1| DNA repair protein recO [Fusobacterium sp. D11]
gi|289716982|gb|EFD80994.1| DNA repair protein recO [Fusobacterium sp. D11]
Length = 233
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/227 (11%), Positives = 67/227 (29%), Gaps = 4/227 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + I++ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIVISKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTIKDYIGIKSDIDKINIVFYIFSILNQILVENGRNRKIYEVLEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
N + + K ++ I L I ++L
Sbjct: 121 NYLDLSNDERKNYLLILYFLYIIIKEEGI--SIENNNDMEELQVEVQTQRKVEIDDNVKK 178
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
E + + ++ D +K A + + ++N +
Sbjct: 179 ILEYLFKDNLKVVINDEKYKIDYIKKAILVLENYINFNLDININAKK 225
>gi|293609823|ref|ZP_06692125.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828275|gb|EFF86638.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 237
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R Y EK+ I+ + T++YGR G +R + ++
Sbjct: 8 HGYMIHHRKYREKSHIVHLFTQEYGRVDGILRQ----------TPPPQYQPIRMQATGKS 57
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ ++ + F G + R P E + ++ + L + S
Sbjct: 58 ELKNFTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLS 117
Query: 126 VIG-------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D Q + +
Sbjct: 118 SHENPDLFLRQILRQFEHVLLPELGYAIDFLIDTQQQPIQAHQFYQFQ 165
>gi|256383954|gb|ACU78524.1| DNA repair protein RecO [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384786|gb|ACU79355.1| DNA repair protein RecO [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455960|gb|ADH22195.1| DNA repair protein RecO [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 249
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 6/210 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN--- 57
M I+L + + + I+ + + YG+ + + L N
Sbjct: 1 MEKTLKGIVLNSFDFQDYDKIITIYSNLYGKISLVCLGVNKIKSKNKYGINYLSYSNFEI 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++S+ NL + + L + + + I L L E+ LY L +
Sbjct: 61 FKSKNKFNLSKLKRSELINSFNHISTDFNLYLYANIITSLVLSLDEQIKNYNLYKTLKLS 120
Query: 118 LNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ K+ V LK IG +DL+KC + + + C S
Sbjct: 121 ISIINNKPDLGLKVCVLFMFYFLKIIGNQIDLSKCGFCNSKINPIIAISFTNY--CSSCK 178
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAF 206
Y + +++ + L +I + +
Sbjct: 179 FCYFDDCILIDNQLSNFINSIFKNDFITNL 208
>gi|42560998|ref|NP_975449.1| DNA repair protein recO [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|81618847|sp|Q6MTE5|RECO_MYCMS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|42492495|emb|CAE77091.1| DNA repair protein recO [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|301321287|gb|ADK69930.1| DNA repair protein RecO [Mycoplasma mycoides subsp. mycoides SC
str. Gladysdale]
Length = 249
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 6/210 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN--- 57
M I+L + + + I+ + + YG+ + + L N
Sbjct: 1 MEKTLKGIVLNSFDFQDYDKIITIYSNLYGKISLVCLGVNKIKSKNKYGINYLSYSNFEI 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++S+ NL + + L + + + I L L E+ LY L +
Sbjct: 61 FKSKNKFNLSKLKRSELINSFNHISTDFNLYLYANIITSLVLSLDEQIKNYNLYKTLKLS 120
Query: 118 LNCHKIPSVI-GKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ S K+ V LK IG +DL+KC + + + C S
Sbjct: 121 ISIINNKSDFGLKVCVLFMFYFLKIIGNQIDLSKCGFCNSKINPIIAISFTNY--CSSCK 178
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAF 206
Y + +++ + L +I + +
Sbjct: 179 FCYFDDCILIDNQLSNFINSIFKNDFITNL 208
>gi|269215642|ref|ZP_06159496.1| DNA repair protein RecO [Slackia exigua ATCC 700122]
gi|269131129|gb|EEZ62204.1| DNA repair protein RecO [Slackia exigua ATCC 700122]
Length = 259
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 7/162 (4%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQSHRM--QPILQAGNLVRVNWR 59
+ A+++ GE + I+ ++ GR + + L+ ++V V
Sbjct: 6 YSARALVVRKVKLGETDRIVHLI-ADDGRLVKAVAKGARKPTSPFSSRLEVFSVVDVLLA 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ ++ ++++H L I + + P Y L+
Sbjct: 65 QGRSLDI-VKEARLVDAHAGVRLDLLRAAAAAPLIECIAKAAQPDLPNPRSYACAVAALD 123
Query: 120 CHKI--PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
I L + GF CV G D
Sbjct: 124 AMDDAEAGDALAIGAAALLKVYSFTGFRPSFDACVSCGRRLD 165
>gi|332830216|gb|EGK02844.1| DNA repair protein RecO [Dysgonomonas gadei ATCC BAA-286]
Length = 240
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 5/163 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF---VRNGQSHRMQPILQAGNLVRVN 57
M ++ ++L +Y +K ++ +V T +GR R S + + ++ +
Sbjct: 1 MLYKTRGLVLNTINYNDKYVLAQVFTESFGRVTYMVSKARGKSSKVPKSLFSPLAILDME 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
+ ++++ R + + + L R L + L+ L
Sbjct: 61 VEHQASRDIQRIREARADMYLYDISGDLSKTSMAFFLSEFLTRVLKDTNDSRILFSFLEQ 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQ 158
+ ++ F L L +GF +L + +
Sbjct: 121 SVQILEMTDKSISNFHLVFMLKLSHFLGFYPNLEEYRENSMFD 163
>gi|253582379|ref|ZP_04859602.1| DNA repair protein recO [Fusobacterium varium ATCC 27725]
gi|251835918|gb|EES64456.1| DNA repair protein recO [Fusobacterium varium ATCC 27725]
Length = 134
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 3/132 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
+ + I++ + +GE + + + T +G+ V+ + + + L + +
Sbjct: 4 FDSNGIVINKKDFGEADRYITIFTETFGKVNVIVKGIRKSKRREQSSTDILALSKFTFYK 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++S + + GL L L + EL+ + LN
Sbjct: 64 KGENFILSNLIT-IDSFSEIKENIDVLGIGLYITSVLNSILVDNNRKKELFSLTLKTLNF 122
Query: 121 HKIPSVIGKIFV 132
K + KI
Sbjct: 123 LKKSNDEKKIIY 134
>gi|320335056|ref|YP_004171767.1| DNA repair protein recO [Deinococcus maricopensis DSM 21211]
gi|319756345|gb|ADV68102.1| DNA repair protein recO [Deinococcus maricopensis DSM 21211]
Length = 244
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 5/154 (3%)
Query: 7 AIILGV--RSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
I++ G ++IL ++T G+ G R G + L + V
Sbjct: 10 GIVIRRAVMPAG--DVILTLLTP-QGKVKGIARGGARGALMSRLNLFQHLAVQLYQTPNN 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L + LE +L + E E + +++ L
Sbjct: 67 DLATIQQATLEGALPRLSEPERYPLAHLLAELADALFQEGEHSEQAFELFAAALRGVAFQ 126
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
+ + + LL GF +C G
Sbjct: 127 PDPEWVALVMSYKLLAFAGFVTRAERCARCGAAD 160
>gi|237739503|ref|ZP_04569984.1| DNA repair protein recO [Fusobacterium sp. 2_1_31]
gi|229423111|gb|EEO38158.1| DNA repair protein recO [Fusobacterium sp. 2_1_31]
Length = 231
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/227 (11%), Positives = 73/227 (32%), Gaps = 6/227 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + +++ YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIISKKDVEEADRYIDIFMEDYGKVSTLIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + A L + L E +LY++L L
Sbjct: 61 FYKKNDSLIISNFSTVKDYLAIKSDIDKINMAFYIFSILNQILVENGRNRKLYEVLEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ K ++ + L + + G +L + P+
Sbjct: 121 DYLNNSDNTRKNYLLLLYFL----YIVIKEEGISIEGDIDELQFEIPEQKKIDLDKTSRK 176
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
E + + ++ + +S+K A + + ++N +
Sbjct: 177 ILEYLFEEKLKIVINDENFELNSVKKAILVLENYINFNLDTNINAKK 223
>gi|19704824|ref|NP_604386.1| DNA repair protein recO [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|19715170|gb|AAL95686.1| DNA repair protein recO [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 233
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 71/227 (31%), Gaps = 10/227 (4%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTVKDYIGIKSDIDKINIAFYIFSILNQILVENGRNRKIYEVLEKTL 120
Query: 119 NCHKIPSVIGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + K + + L+K G L+ ++L V
Sbjct: 121 DYLNTSNDERKNYLLILFFLNTLIKEEGISLE-----DNSNMEELQVVVETQRKVEIDDN 175
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ + + ++ + ++ A + + ++N + +
Sbjct: 176 VKRILQYLFEDNLKVVINDEKYKINYIRKAILVLENYINFHLDTNIN 222
>gi|283850612|ref|ZP_06367899.1| Recombination protein O RecO [Desulfovibrio sp. FW1012B]
gi|283573855|gb|EFC21828.1| Recombination protein O RecO [Desulfovibrio sp. FW1012B]
Length = 250
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + + A++L V + E + + + + G + F G R + + V ++
Sbjct: 1 MEFSEKALVLKVGRFREIDAWVRLFSPVRGLYTAFAFGGMKSRRRFLGCLDAFNHVRFKV 60
Query: 61 RLAQNLGEFRFEVLE 75
R + G +
Sbjct: 61 RRSGYRGYHCLTEAK 75
>gi|163816525|ref|ZP_02207889.1| hypothetical protein COPEUT_02715 [Coprococcus eutactus ATCC 27759]
gi|158448225|gb|EDP25220.1| hypothetical protein COPEUT_02715 [Coprococcus eutactus ATCC 27759]
Length = 247
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 2/178 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I+L GE + + +T++ GR F + + V ++ ++
Sbjct: 8 HGIVLSSSLQGEYDRRMVALTKERGRITVFATGVRRGTNPLQSKTQMFVMGSFTLIPGRD 67
Query: 66 LGE-FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+V E + + Y + E + + ++L + L +
Sbjct: 68 SYRLVNIDVDEYFHQLTMDIDAYCYASYFCEVMSFMTHEGDRAADYLNLLYVSLKALEKG 127
Query: 125 SVIGK-IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ K I E+ L+ G G+ C + G T+ SGG +C
Sbjct: 128 QMPAKLIRCVYEIKLMDVFGQGIQSFHCPICGKTEVSNVFDAASGGLLCDGCRGRAKH 185
>gi|304439783|ref|ZP_07399681.1| recombination protein O [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371770|gb|EFM25378.1| recombination protein O [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 227
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 2/169 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
+ + I+L R+ GE + L+V T G + + + + + S+
Sbjct: 2 IRTEGIVLSERNAGESSKALKVYTLDAGLVTIYAKGALKRSSKVTSSSQVFFVNEYTISK 61
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+L S+ S Y + + E Y +L +L
Sbjct: 62 SGVFYYIKSANILSSNLHLRQSLVKLSYANLVLEIYLKSNMEEIENKNAYLLLKKYLETI 121
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
+ + + + + IGF + L S
Sbjct: 122 EDSTARVRTMQLLLKY-ISFIGFRPAMKGKYFLVDGGGLSPNLEYSSKY 169
>gi|257452392|ref|ZP_05617691.1| DNA repair protein recO [Fusobacterium sp. 3_1_5R]
gi|317058935|ref|ZP_07923420.1| DNA repair protein recO [Fusobacterium sp. 3_1_5R]
gi|313684611|gb|EFS21446.1| DNA repair protein recO [Fusobacterium sp. 3_1_5R]
Length = 219
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ A +LG S+GE + L V+T +G+ V+ + + I+ L V+ +
Sbjct: 5 IRNKAFVLGNYSFGEADRNLIVLTEDFGKIQLTVKGILKSKKRDIVATEALSYVDLLLYK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ F +E+ A + + + RF+ E +++ +L L
Sbjct: 65 KGEQFIISDFSSIENFMAIRQDLDSLSFAFYLLAVVNRFVFEGYRVPKIFKLLKNSLYYL 124
Query: 122 KIPSVIGKIFVQIELMLLKNI 142
V K V + L +
Sbjct: 125 NREEVKKKQLVLLNYFLFILM 145
>gi|258405808|ref|YP_003198550.1| DNA repair protein RecO [Desulfohalobium retbaense DSM 5692]
gi|257798035|gb|ACV68972.1| DNA repair protein RecO [Desulfohalobium retbaense DSM 5692]
Length = 252
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 4/159 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW--- 58
+ + ++L V + E + + +++ G GF G R + + +V +
Sbjct: 4 EFTEPVVVLHVGLFREADCWVRLLSPSKGVVTGFAFGGMRSRRRFCGCLDAVSKVQFRFQ 63
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
RS+ + L +L+ + + + E++ +L L
Sbjct: 64 RSKRGEYLTLCEGALLDRFTGVRQRPGRLGMAVNCLKFVEAVQLGEHGAPEIFALLTQTL 123
Query: 119 NCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGV 156
+ + + G+ +L +C++ G
Sbjct: 124 QLLDETPALEPVVPLFFRARVAFEHGYQPELDQCLLCGC 162
>gi|298528168|ref|ZP_07015572.1| DNA repair protein RecO [Desulfonatronospira thiodismutans ASO3-1]
gi|298511820|gb|EFI35722.1| DNA repair protein RecO [Desulfonatronospira thiodismutans ASO3-1]
Length = 237
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 4/187 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNW 58
M + + ++L + E ++ + ++ G GF G R + L + NLV
Sbjct: 1 MSFSEKVLVLRTGRFKEHDLWVRFLSPTRGVQTGFAFGGCRSRRRFCGCLDSLNLVLFTI 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSS-LFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + L S +L + + + + + PE + +Y ++
Sbjct: 61 GYSSGKRYLTLQEGTLVSGFQELKNQRDKLGMAVNCLRFVQKICPEGDDSSRIYPLILEV 120
Query: 118 LNCHKIPSVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L + I F + G+ +C V G+ + + + S
Sbjct: 121 LEVMENHPDIPIFFPLLFKARAAFIHGYEPVPAECAVCGLGAENMHLGFFSFSDGRVFCP 180
Query: 177 LPYAEKM 183
++
Sbjct: 181 GCIRDQK 187
>gi|294783435|ref|ZP_06748759.1| DNA repair protein RecO [Fusobacterium sp. 1_1_41FAA]
gi|294480313|gb|EFG28090.1| DNA repair protein RecO [Fusobacterium sp. 1_1_41FAA]
Length = 231
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/228 (10%), Positives = 72/228 (31%), Gaps = 8/228 (3%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVN 57
M + + II+ + E + +++ YG+ ++ + + + + +L
Sbjct: 1 MIFLRGKGIIISKKDVEEADRYIDIFMEDYGKISTLIKGIRKSKRRDKTAVDILSLTDFQ 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+ + + ++ + A L + L E +LY++L
Sbjct: 61 FYKKNDNIIISNFST-VKDYLAIKSDIDKINMVFYIFSILNQILVENGRNRKLYEVLEKT 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L+ K ++ + L + + G +L + P+
Sbjct: 120 LDYLNSSEDNRKNYLLLLYFL----YIVIKEEGISIEGDINELQFEIPEQKKINLDETSK 175
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
E + + ++ + +S+K A + + ++N +
Sbjct: 176 KILEYLFEDKLKIVINDENYELNSVKKAILVLENYINFNLDTNINAKK 223
>gi|331703463|ref|YP_004400150.1| DNA repair protein RecO [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|328802018|emb|CBW54172.1| DNA repair protein RecO [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 249
Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 6/210 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN--- 57
M I+L + + + I+ + + YG+ + + L N
Sbjct: 1 MEKTLKGIVLNSFDFQDYDKIITIYSNLYGKISLVCLGVNKIKSKNKYGINYLSYSNFEI 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++S+ NL + + L + + + I L L E+ LY L +
Sbjct: 61 FKSKNKFNLSKLKRSELINSFNNISTDFNLYLYANIITSLVLSLDEQIKNYNLYKTLKLS 120
Query: 118 LNCHKIPSV-IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
++ K+ V LK IG ++L+KC + + + C S
Sbjct: 121 ISIINNKPDLGLKVCVLFMFYFLKIIGNQINLSKCGFCNSKINPIIAISFTNY--CSSCK 178
Query: 177 LPYAEKMLVLPSFLWKEEQTIDADSLKSAF 206
Y + +++ + L +I + +
Sbjct: 179 FCYFDDCILIDNQLSNFINSIFKNDFITNL 208
>gi|257784593|ref|YP_003179810.1| DNA repair protein RecO [Atopobium parvulum DSM 20469]
gi|257473100|gb|ACV51219.1| DNA repair protein RecO [Atopobium parvulum DSM 20469]
Length = 249
Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 5/180 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
AI+L E+++IL +++ + + + + ++ ++
Sbjct: 10 KAIVLDRTKLAEQDLILTMLSDTGEERRAVAKGARKPGGRFAARVELFCELDVLLAEGRS 69
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML----NIFLNCH 121
L L A L + +I + RF L
Sbjct: 70 LDILSEATLLEPHATLRGDLSKVAAASAICEVARFSCIDGVEDAFLFSLLSRALKACEEV 129
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + +L + G+ +L C+ G + L + SP +GGA+C S
Sbjct: 130 DDEKHLDLVVAAYVFKVLAHEGWRPELASCIACGD-EALTYFSPTAGGALCGSCAHEIEG 188
>gi|257465815|ref|ZP_05630126.1| DNA repair protein recO [Fusobacterium gonidiaformans ATCC 25563]
gi|315916972|ref|ZP_07913212.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
gi|313690847|gb|EFS27682.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 219
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 1/141 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++ A +LG S+GE + L V+T +G+ V+ + + + L V+ +
Sbjct: 5 IRNKAFVLGNYSFGEADRNLIVLTEDFGKIQLTVKGILKSKKRDKVATEALSYVDLLLYK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ F +E+ A + + + RF+ E +++ +L L
Sbjct: 65 KGEQFIISDFSSIENFMAIRQDLDSLSFAFYLLALVNRFVFEGYRVPKIFQLLKNSLYYL 124
Query: 122 KIPSVIGKIFVQIELMLLKNI 142
+ K V + L +
Sbjct: 125 NREATKKKQLVLLNYFLFVLM 145
>gi|325123049|gb|ADY82572.1| DNA repair protein [Acinetobacter calcoaceticus PHEA-2]
Length = 227
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 17/164 (10%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEF 69
+ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 2 IHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELKN--- 51
Query: 70 RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG- 128
++ + F G + R P E + ++ + L + S
Sbjct: 52 FTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLSSHEN 111
Query: 129 ------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
+I Q E +LL +G+ +D + Q + +
Sbjct: 112 PDLFLRQILRQFEHVLLPELGYAIDFSIDTQQQPIQAHQFYQFQ 155
>gi|213859493|ref|ZP_03385197.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 160
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 7/151 (4%)
Query: 84 SSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELMLLKNI 142
GL L R L EL+ + + + EL LL ++
Sbjct: 1 GITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHL 60
Query: 143 GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSL 202
G+G++ T C +G D + + + + D D+L
Sbjct: 61 GYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTL 120
Query: 203 KSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
++A + T + AL+ + RE F
Sbjct: 121 RAAKRFT-----RMALKPYLGGKPLKSRELF 146
>gi|262066169|ref|ZP_06025781.1| DNA repair protein RecO [Fusobacterium periodonticum ATCC 33693]
gi|291380143|gb|EFE87661.1| DNA repair protein RecO [Fusobacterium periodonticum ATCC 33693]
Length = 231
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 6/227 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + +++ YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIISKKDVEEADRYIDIFMEDYGKVSTLIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + A L + L E +LY++L L
Sbjct: 61 FYKKNDSLIISNFSTVKDYLAIKSDIDKINMAFYIFSILNQILVENGRNRKLYEVLEKTL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ K ++ + L + + G +L + P+
Sbjct: 121 DYLNSSEDNRKNYLLLLYFL----YIVIKEEGISIEGDINELQFEVPEQKKINLDETSKR 176
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
E + + ++ +S+K A + + ++N +
Sbjct: 177 ILEYLFEDKLKIVINDENFKINSVKKAILVLENYINSNLDTNINAKK 223
>gi|310779162|ref|YP_003967495.1| DNA repair protein RecO [Ilyobacter polytropus DSM 2926]
gi|309748485|gb|ADO83147.1| DNA repair protein RecO [Ilyobacter polytropus DSM 2926]
Length = 241
Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 71/227 (31%), Gaps = 7/227 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRSR 61
D +I+ YGE + ++ + +R+YG+ ++ + + + ++ + + +
Sbjct: 5 SSDGVIIKKLDYGEADRLITIFSRRYGKIQLNIKGIRKSKRRDKNAVELLAFSKFVFYRK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + L+S + + + L L E + LYD +N
Sbjct: 65 GERLITTNFEL-LDSFWGIRSNIKNIEIIMYILSVLNNILVENQRKSVLYDYFLKVINYL 123
Query: 122 KIPSVIGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
K +++ G +L++ ++ + + S
Sbjct: 124 DKSENQIKNHLLVCHFLSKMIQEEGIAFELSE-GEYFDIENSKFRKNSGSYFLKLSKMEK 182
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHC 225
+ + ++ D +K + + ++N +
Sbjct: 183 KILENISGEKSDGVLKEIRDITVVKKVINILERYINYHLHTSLNFKH 229
>gi|313905843|ref|ZP_07839201.1| DNA repair protein RecO [Eubacterium cellulosolvens 6]
gi|313469357|gb|EFR64701.1| DNA repair protein RecO [Eubacterium cellulosolvens 6]
Length = 215
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 3/147 (2%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L GE + + ++TR+ GR F R + Q + A V + ++
Sbjct: 9 GMVLSASPVGENDKRVVLLTRELGRISAFARGARRPGNQLMAVANPFVFGQFTLIPGRSA 68
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPC--LELYDMLNIFLNCHKIP 124
+ + ++ +Y + + L + K
Sbjct: 69 YSLVRAEIRDYFTEIAVEYPGVYYGYYFLDFAGYYGREGLDATDMLNLLYLTVKALLKKN 128
Query: 125 SVIGKIFVQIELMLLKNIG-FGLDLTK 150
+ EL L+ G F D +
Sbjct: 129 LDNRLVRRIFELRLMTMNGEFAPDPSG 155
>gi|270631537|ref|ZP_06222006.1| DNA repair protein RecO [Haemophilus influenzae HK1212]
gi|270317531|gb|EFA29000.1| DNA repair protein RecO [Haemophilus influenzae HK1212]
Length = 141
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 6/140 (4%)
Query: 99 RFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQ 158
R + P L+ L + + E LL+ +G+G+D C +G
Sbjct: 4 RVIESETPNPALFQHYLKCLTGLATETNVEPTLRLFEFQLLQILGYGVDFLHCAGSGEPV 63
Query: 159 DLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL 218
D + + ++ D ++A + T + AL
Sbjct: 64 DCPMTYRYREEKGFIASLVKDNLTFYGRDLLAFEALDFSDDAVRQAAKRFT-----RIAL 118
Query: 219 QHNIIHCH-LLRENFLGKLL 237
+ + RE F +L
Sbjct: 119 KPYLGDKPLKSRELFSQHIL 138
>gi|210633810|ref|ZP_03297857.1| hypothetical protein COLSTE_01774 [Collinsella stercoris DSM 13279]
gi|210159070|gb|EEA90041.1| hypothetical protein COLSTE_01774 [Collinsella stercoris DSM 13279]
Length = 255
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 14/166 (8%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
++ AI+L E ++IL + + GR + + R+ + V V +
Sbjct: 7 FRTKAIVLDKTKLKETDLILT-LVGESGRQIRAVAKGARKPGSRLAARCELCCEVDVLFA 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ +++ S S L E +Y + L
Sbjct: 66 H-GRNLDIVSQADLIASPLGAQPSYELLTAASAVAEVAETCTYEDAEDPFVYAITRAVLA 124
Query: 120 CH---------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ P+ + + LL ++G+ D + CV G
Sbjct: 125 HLAAAGADTPVEGPAHLDLLVAAYIFKLLSHVGYRPDYSACVACGD 170
>gi|283796158|ref|ZP_06345311.1| DNA repair protein RecO [Clostridium sp. M62/1]
gi|291076377|gb|EFE13741.1| DNA repair protein RecO [Clostridium sp. M62/1]
Length = 215
Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 4/147 (2%)
Query: 1 MY--WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW 58
M Q +++ G+ + L ++T++ G+ F R + Q V +
Sbjct: 1 MRELIQATGMVISASPVGDYDKRLVILTKERGKITCFARGAKRAASQLRAPCRPFVFGVF 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLF-LYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
++ +E++ +L S Y + E E +L
Sbjct: 61 SLTEGRDAYNLYGAEVENYFDELASDMECACYASYFAEFAGYYGRENVDESETIRLLYQS 120
Query: 118 LNCHKIPSVIGKI-FVQIELMLLKNIG 143
P++ ++ EL L+ G
Sbjct: 121 FRALLKPAIPNRLVRRIFELRLMAIQG 147
>gi|269120185|ref|YP_003308362.1| DNA repair protein RecO [Sebaldella termitidis ATCC 33386]
gi|268614063|gb|ACZ08431.1| DNA repair protein RecO [Sebaldella termitidis ATCC 33386]
Length = 219
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ + I++ + E +++L+V T++YG+ ++ + + + L + ++
Sbjct: 3 ILKTEGIVIKKTNVKEADLVLKVFTKEYGKIDIYINGIRKSKRREKLAVELMSVTDFLIY 62
Query: 62 LAQNLGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ L + K+ LS Y + + + +E Y+ +
Sbjct: 63 EKNSKYSSNSFTLTAFFPKIQLSFLKLKYSYYLLHLIDKIYEHNSEDIEFYEKIKNLFGY 122
Query: 121 HKIPSVIGKIFVQ 133
S K
Sbjct: 123 INTLSEDEKKTEI 135
>gi|221194425|ref|ZP_03567482.1| DNA repair protein RecO [Atopobium rimae ATCC 49626]
gi|221185329|gb|EEE17719.1| DNA repair protein RecO [Atopobium rimae ATCC 49626]
Length = 249
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 5/180 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
A++L GE+++IL +T + + + + V+ ++
Sbjct: 10 KALVLDRTKLGEQDLILTCLTDTGEELRAVAKGARKPGGRLAARTELFSEVDMLVAEGRS 69
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFR-FLPEREPCLELYDMLNIFLNCHKIP 124
L L S K+ + ++ + R E L+ +L+ L +
Sbjct: 70 LFVVSEASLLSAHEKIRGDLSRVSAASTLCEIARLTCIEGYTDTFLFPILSRALTAVERA 129
Query: 125 SVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
S + V + + K + G+ +L C+ G + + S ++GG +C S
Sbjct: 130 SDEAHLDVIVAAYVFKVLAHGGWRPELHSCIACGD-EAPTFFSSRAGGVLCASCAREVEG 188
>gi|33239847|ref|NP_874789.1| putative recombination protein O [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237373|gb|AAP99441.1| Recombinational DNA repair protein RecO [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 256
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 4/155 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ L V GE + +L ++T + G V + + + + +
Sbjct: 8 KGLCLKVGPLGENDRLLTLLTHEEGIVRIAVPGARRPKSRLAATSALTFLELLIGGKSTL 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ +V++S + +P E+ + I L +
Sbjct: 68 RRARQIKVIKSFSKLGEKLETLSAAQALSELAMLLVGTNDPQPEILQAVLIHLERLQKED 127
Query: 126 VIGK----IFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ VQ + LL G+GL + KC TG+
Sbjct: 128 IKPVEALANCVQACVHLLALGGYGLPIQKCCWTGI 162
>gi|303232260|ref|ZP_07318959.1| DNA repair protein RecO [Atopobium vaginae PB189-T1-4]
gi|302481670|gb|EFL44731.1| DNA repair protein RecO [Atopobium vaginae PB189-T1-4]
Length = 249
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 51/181 (28%), Gaps = 6/181 (3%)
Query: 6 DAIIL-GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
A+++ EK++I+ ++ + + + ++
Sbjct: 10 HALVIDHRVRLKEKDVIVRLLCEDGCLRSAVAKGALRPGGRFASRTELGCEADFLLSEGT 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCL----ELYDMLNIFLNC 120
+L + L + + + L R+L + + +
Sbjct: 70 SLDTIQEAQLRNANVHIREDPDTFALACAACELTRYLSSHDARDAYVFAICTAFLAAIKS 129
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
K + L L+ + G+ L C + + + S GGA+C S
Sbjct: 130 AKSRNSALAFMCAYTLKLMAHAGYMPILASCASCSD-EQVAYFSVLDGGALCASCARGQD 188
Query: 181 E 181
Sbjct: 189 M 189
>gi|319947867|ref|ZP_08022054.1| DNA repair protein RecO [Dietzia cinnamea P4]
gi|319438473|gb|EFV93406.1| DNA repair protein RecO [Dietzia cinnamea P4]
Length = 301
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 11/182 (6%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGR--HLGFVRNGQSHRMQPILQAGNLVRVNW-- 58
+ D +++ GE + I+ ++T ++G + RM L+ +V V
Sbjct: 4 FTDTGLVVRTYDLGEADRIVTLLTERHGLVRAVARAVRRTRSRMGASLEPFAVVEVQIAP 63
Query: 59 -RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER-EPCLELYDMLNI 116
R + + G + R E P L +
Sbjct: 64 GRGSSGLGTVRQATSRESLARPLVADYPAYTSGCVVLETAERLAGEEGAPTPRLLGLAVG 123
Query: 117 FLNCHKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCR 173
L + + LL+ + G+ L CV G SGG VC
Sbjct: 124 ALRSLAEHRRAPGLV--ADAFLLRAMAASGWEPVLDCCVRCGALGPHRAFHVASGGTVCV 181
Query: 174 SV 175
Sbjct: 182 HC 183
>gi|260889542|ref|ZP_05900805.1| putative DNA repair protein RecO [Leptotrichia hofstadii F0254]
gi|260860953|gb|EEX75453.1| putative DNA repair protein RecO [Leptotrichia hofstadii F0254]
Length = 168
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 47/135 (34%), Gaps = 3/135 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWR 59
+ + I+L + E ++ + + ++ YG+ + + + + L N V +
Sbjct: 3 IIKTNCIVLKKKEMKEADLQVTLFSKDYGKIMATAYGIRKSNKRNVVSLNPLNEVEITLS 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ E++++ + + + + L + + + + +D L L
Sbjct: 63 QKN-NYYVVKEVEIIKNFNSIIKNINKLEISLYVLDSIDKIYYMTNENGDFFDKLVEILA 121
Query: 120 CHKIPSVIGKIFVQI 134
I + K +
Sbjct: 122 FIDILPCLKKGYKYY 136
>gi|291287432|ref|YP_003504248.1| DNA repair protein RecO [Denitrovibrio acetiphilus DSM 12809]
gi|290884592|gb|ADD68292.1| DNA repair protein RecO [Denitrovibrio acetiphilus DSM 12809]
Length = 233
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 7/156 (4%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ +AII + Y + + I T +GR FV+ + + + +++ +
Sbjct: 5 KTEAIIYKLVRYADSSAIAFAFTEDFGRLKLFVQKAFTKK--GGIMCFMPGMLDFGKKDT 62
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ FE ++ L++ + + I + L E E + L + +
Sbjct: 63 DLSKYYSFENNTAYYH-YLNNHEIVMRMHLIFEIIEGLYEPELPDKKLFDLLLKYDDENF 121
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ I I LK G L C G D
Sbjct: 122 RKITPYIIYFI----LKRSGVMFQLDSCYNCGSKDD 153
>gi|322509027|gb|ADX04481.1| recO [Acinetobacter baumannii 1656-2]
gi|323519009|gb|ADX93390.1| recombinational DNA repair protein (RecF pathway) [Acinetobacter
baumannii TCDC-AB0715]
Length = 227
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 71/234 (30%), Gaps = 21/234 (8%)
Query: 10 LGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEF 69
+ R Y EK+ I+ + T++YGR G +R Q +R+ +
Sbjct: 2 IHHRKYREKSHIVHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELK---N 51
Query: 70 RFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG- 128
++ + F G + R P E + ++ + L + S
Sbjct: 52 FTKLEILNQPVFFFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLSSHEN 111
Query: 129 ------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+I Q E +LL +G+ +D + L + + + +
Sbjct: 112 PDLFLRQILRQFEHILLAELGYAIDFSIDSSQKEI--LSQQFYQFQVNEGFAPVVQASRS 169
Query: 183 MLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENFLGK 235
L + L D QL L + + + R+ ++
Sbjct: 170 SLSGKAILSMLNYEQGQDFSHEQLQLLGK-LYRQMITSLLGDRPLKSRQLWIQN 222
>gi|262037391|ref|ZP_06010855.1| DNA repair protein RecO [Leptotrichia goodfellowii F0264]
gi|261748553|gb|EEY35928.1| DNA repair protein RecO [Leptotrichia goodfellowii F0264]
Length = 224
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 2/137 (1%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + ++L + E ++ + TR+YG+ + + + + L +
Sbjct: 1 MNILKTKCLVLKNKKINESDLTATIFTREYGKINATAYGIRKSKSRNPITLNPLSMADMT 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ E+++ + L + + + +D L L
Sbjct: 61 IHKKNGFYTVNESELIKKFENITKNIEKLEISLYILDSVNKIYDINYEDRIFFDRLIEIL 120
Query: 119 NCHKIPSVIGKIFVQIE 135
I K +
Sbjct: 121 EFINTREKILKGYKYYL 137
>gi|217967703|ref|YP_002353209.1| DNA repair protein RecO [Dictyoglomus turgidum DSM 6724]
gi|217336802|gb|ACK42595.1| DNA repair protein RecO [Dictyoglomus turgidum DSM 6724]
Length = 236
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 9/207 (4%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRL 62
++ IIL + GE +++L + ++ G+ L R + + + ++ + + R
Sbjct: 10 EEGIILFKKKVGEGDLLLTIYGKEKGKFLAIARGALKIKNRLRGKVNIFSIGKGYFVKRR 69
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+L F + + F+ + + +F+P LE+Y+ L FL
Sbjct: 70 EVDLLIFWDSYEK-FFEIIKDVDKFIILSKYLKKADKFIPLEVKDLEIYEYLYKFLK--N 126
Query: 123 IPSVIGKIFVQIELMLLKNIGF----GLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + LL+ +G+ L C + + ++ + C
Sbjct: 127 WNLINKYSGDVFLIKLLQKLGYISKVELKCKGCDKDLLKDEYVYFDLDNRKIYCEDCRTL 186
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSA 205
+ K+ + E D L
Sbjct: 187 KSLKIKSEEVIKFNEILDRTFDELIMG 213
>gi|77414407|ref|ZP_00790561.1| recombination protein O [Streptococcus agalactiae 515]
gi|77159554|gb|EAO70711.1| recombination protein O [Streptococcus agalactiae 515]
Length = 176
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 2/176 (1%)
Query: 33 LGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ 92
+ FV++ + +LQ + + ++ + + Y
Sbjct: 1 MFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQETNSDLFKLSYASY 60
Query: 93 SIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCV 152
+ + +L+ L L + + E+ LL+ G L+ CV
Sbjct: 61 ITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCV 120
Query: 153 VTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS--FLWKEEQTIDADSLKSAF 206
S K G +C + + + P+ +L Q+I D K
Sbjct: 121 FCHRVGLPFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDYKQFL 176
>gi|171910510|ref|ZP_02925980.1| DNA repair protein RecO [Verrucomicrobium spinosum DSM 4136]
Length = 221
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 3/145 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNW-RS 60
AI++ E ++I+ + + G + + L V + S
Sbjct: 32 SATAILINRHRLTESSLIVHWCSPEQGLFKTVAKGALRPQSAFAGRLDLFVTCEVVFLPS 91
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +++ S + L G + + P ++++L L+
Sbjct: 92 TKSDLHSLKEVHLVQPRLQMRNSYARVLAGTYFSKLVELVVERETPLGGVHELLQKSLDY 151
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFG 145
+ ++ + E L + +G G
Sbjct: 152 LEGHEPSTRLVHRFENKLCEELGLG 176
>gi|315186752|gb|EFU20510.1| DNA repair protein RecO [Spirochaeta thermophila DSM 6578]
Length = 256
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 4/155 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ + +++ R G+++ + +++R+ G Q + A R + +
Sbjct: 6 RTEGVVVRSRPVGDQDRAVVILSRE-GLLEATAYGAQRPSSRLGAAAQVGSRAVFYLYVN 64
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
G + ++ L Q L E+Y +L + +
Sbjct: 65 PVKGHVKVSDVDRVEVLDAGGLEGLAVFQLWADLVVATHGAGHEAEVYRLLLEGRDALRR 124
Query: 124 PSVIGKIFVQIELMLLK---NIGFGLDLTKCVVTG 155
+ ++ + LL+ +G + +C G
Sbjct: 125 AGGVEEVERVLLGWLLRFLGLLGVAPEWDRCARCG 159
>gi|318042191|ref|ZP_07974147.1| putative recombination protein O [Synechococcus sp. CB0101]
Length = 264
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 7/161 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ ++L GE + ++ V++ G + + +
Sbjct: 8 EGLVLRSTPLGESDRLITVLSAGQGLVRLAAPGARKPKSSMAAAVPLALLNLQVGGRGDL 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ V + A +P + + + L + L ++
Sbjct: 68 KRVRQLSVQRNFAALAERLESLAAAQGLAEQTLLLVPSGDAVEGVLEDLLLQLARLELVV 127
Query: 126 VIGKIFVQIE-------LMLLKNIGFGLDLTKCVVTGVTQD 159
+ V+ + LL G+ L L C +G D
Sbjct: 128 KERQANVEALAIAVQGVVHLLALGGYALPLACCARSGTPLD 168
>gi|312898792|ref|ZP_07758180.1| DNA repair protein RecO [Megasphaera micronuciformis F0359]
gi|310619954|gb|EFQ03526.1| DNA repair protein RecO [Megasphaera micronuciformis F0359]
Length = 245
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 1/145 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
D IIL V+ + ++ V T Q GR F G + + R+ + +R N
Sbjct: 15 DGIILNVQKHPSGTRLITVFTLQAGRVRVFASGG-GRKRKNGNPFFQFARIAFEARRKDN 73
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ A + Q + + L E L
Sbjct: 74 TYTMGEYECRNAKALMNLDWNTYAYTQILAEIVTSLFPEGERDEEVYQLLKAYAETIDYK 133
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTK 150
+ + L+ + GF D+ +
Sbjct: 134 DVRTATIIAGWQLIASAGFFPDIDR 158
>gi|76798760|ref|ZP_00780977.1| DNA repair protein RecO [Streptococcus agalactiae 18RS21]
gi|76585890|gb|EAO62431.1| DNA repair protein RecO [Streptococcus agalactiae 18RS21]
Length = 220
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 48/168 (28%)
Query: 33 LGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ 92
+ FV++ + +LQ + + ++ + + Y
Sbjct: 1 MFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQETNSDLFKLSYASY 60
Query: 93 SIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCV 152
+ + +L+ L L + + E+ LL+ G L+ CV
Sbjct: 61 ITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCV 120
Query: 153 VTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDAD 200
S K G +C + + + P+ L+ +
Sbjct: 121 FCHRVGLPFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQ 168
>gi|328947959|ref|YP_004365296.1| DNA repair protein recO [Treponema succinifaciens DSM 2489]
gi|328448283|gb|AEB13999.1| DNA repair protein recO [Treponema succinifaciens DSM 2489]
Length = 250
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 6/174 (3%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
+IL ++ GE N +++V++ + G + G R++ ++Q + S ++N
Sbjct: 4 VILSLKESGENNRLVKVISAENGIFNAMLYGGPKSRLKSLVQPFYSGILYIYSDESRNSI 63
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVI 127
+ ++ +S L + L + + +L FL+
Sbjct: 64 KITDFDAQNCHLSFRTSLLKSWAASFACELVLKTKCAGETEKAFVLLCAFLDGIDSVDEN 123
Query: 128 GKIFVQ--IELMLLKNIGFGLDLTKCVVTG----VTQDLLWVSPKSGGAVCRSV 175
L +G + C G + + G VC
Sbjct: 124 EARLGILRFVWRYLGLLGLQPEPRTCCGCGSSLLSHEHNASYIERQNGFVCADC 177
>gi|302670579|ref|YP_003830539.1| DNA repair protein RecO [Butyrivibrio proteoclasticus B316]
gi|302395052|gb|ADL33957.1| DNA repair protein RecO [Butyrivibrio proteoclasticus B316]
Length = 217
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 44/144 (30%), Gaps = 4/144 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLA 63
I+L G+ + + + T + G+ F R+ + ++ +++ +
Sbjct: 8 RGIVLKHAPVGDYDWVATIFTAERGKITAFARSARKPSAKLSGLVEPFCFGTFKLFA-GK 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ ++ YG + + E +L ++L L
Sbjct: 67 NSYTIAEADIENYFEGFRADLEGACYGTFFLELCSFYTRENNEDKDLLNLLYFSLKALLK 126
Query: 124 PSVIGKI-FVQIELMLLKNIGFGL 146
++ ++ EL L G
Sbjct: 127 ENIPNRLVRCIFELRALVIEGEYP 150
>gi|291458561|ref|ZP_06597951.1| DNA repair protein RecO [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419094|gb|EFE92813.1| DNA repair protein RecO [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 217
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 2/144 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SRLAQN 65
++L R + + L ++T++ G+ + + + V +++ ++
Sbjct: 11 GVVLSSRPSRDYDKCLTLLTKELGKITVWASGAKKPGSPLMAACRPFVFGSFQLAKGRSG 70
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY-DMLNIFLNCHKIP 124
+ L + YG + E P E+ + K
Sbjct: 71 YNLRSASIARYFTEIALDLTNACYGSYFLEFSDYCAQEGLPSEEMVSLLYLSLCALLKEN 130
Query: 125 SVIGKIFVQIELMLLKNIGFGLDL 148
+ EL +L G +L
Sbjct: 131 IPNELVRRIFELRMLFLNGEYTEL 154
>gi|320539211|ref|ZP_08038882.1| putative gap repair protein [Serratia symbiotica str. Tucson]
gi|320030849|gb|EFW12857.1| putative gap repair protein [Serratia symbiotica str. Tucson]
Length = 155
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 7/151 (4%)
Query: 90 GLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK-IPSVIGKIFVQIELMLLKNIGFGLDL 148
GL L R L + L+ L Q EL LL ++G+GLD
Sbjct: 1 GLYVNELLSRVLEQETNYAVLFFDYLKCLQTLAAEEHSPEYALRQFELALLNHLGYGLDF 60
Query: 149 TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208
C +G D + + E Q D +L++A +
Sbjct: 61 LHCAGSGQPVDDGMTYRYREEKGFIASLVVDHYSFTGRELRALAERQFPDMATLRAAKRF 120
Query: 209 TDYFLNKYALQHNIIHCH-LLRENFLGKLLE 238
T + AL+ + RE F + +
Sbjct: 121 T-----RLALKPYLGGKPLKSRELFCQLVRK 146
>gi|254303911|ref|ZP_04971269.1| recombination protein RecO [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324103|gb|EDK89353.1| recombination protein RecO [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 233
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/227 (10%), Positives = 71/227 (31%), Gaps = 10/227 (4%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW- 58
M + + II+ + E + + + YG+ ++ + + + L ++
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVFTVIKGIRKSKKRDKTAVDILSLTDFQ 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +L F ++ + L + L E ++Y++L L
Sbjct: 61 FYKKNDSLIISNFSTVKDYIGIKSDIDKINIAFYIFSMLNQILVENGRNRKIYEVLEKTL 120
Query: 119 NCHKIPSVIGKIF---VQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + K + + L+K G ++ + ++L
Sbjct: 121 DYLNTSNDERKNYLLILFFLNTLIKEEGISIE-----DSSHMEELQVEMQNQRKVEIDDN 175
Query: 176 GLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNI 222
+ + + ++ D ++ A + + ++N + +
Sbjct: 176 VKKILQYLFEDNLKVVINDEKYKIDYVRKAILVLENYINFHLDTNIN 222
>gi|78778779|ref|YP_396891.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9312]
gi|78712278|gb|ABB49455.1| DNA replication and repair protein RecO [Prochlorococcus marinus
str. MIT 9312]
Length = 261
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE + ++ ++T + G V + + N + + +
Sbjct: 10 KGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + L+
Sbjct: 70 KS-VRQIKILKSYAGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLAHLDRIYLY 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + I +Q + LL G L + C TG
Sbjct: 129 EVSKEEDIKMLCISIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|257463569|ref|ZP_05627961.1| DNA repair protein recO [Fusobacterium sp. D12]
gi|317061124|ref|ZP_07925609.1| DNA repair protein recO [Fusobacterium sp. D12]
gi|313686800|gb|EFS23635.1| DNA repair protein recO [Fusobacterium sp. D12]
Length = 219
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 57/192 (29%), Gaps = 1/192 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSR 61
+ A +LG S+GE + L ++T +G+ V+ + + + + V + +
Sbjct: 5 ISNKAFVLGNYSFGEADRNLILLTEDFGKIQLTVKGILKSKRRDKVATEPISYVEFLLYK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ F +LES + L +F+ E +++ +L L
Sbjct: 65 KGEQFIVNDFSLLESFENIRQDLDSLGVAFYLLAVLNKFVFEGYRVPKIFRLLKNSLYYL 124
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
K + + L + + + L E
Sbjct: 125 NQERDRRKQLLLLNYFLFFLMQEEGIFRIDEILEHLSFEEKEISRLLYQKKIESILKEEE 184
Query: 182 KMLVLPSFLWKE 193
FL K+
Sbjct: 185 YTEEKLFFLIKK 196
>gi|11467307|ref|NP_043164.1| hypothetical protein CypaCp027 [Cyanophora paradoxa]
gi|1351792|sp|P48323|YCX1_CYAPA RecName: Full=Uncharacterized 24.3 kDa protein in hemA-psbN
intergenic region; AltName: Full=ORF206
gi|1016108|gb|AAA81195.1| orf206 [Cyanophora paradoxa]
Length = 206
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 4/161 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + +AIIL ++ + I + T + G + + ++ +
Sbjct: 1 MLFASNAIILKIKQRNSNSYIYTLYTYEEGLKEVIIF--TNQKILCSNLKLYRIYFVLFK 58
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ A R L + + + + L E C +Y + + L
Sbjct: 59 KGAPWDQIQRLYPLFFYPKIEQNPLKMIVLEYLSELIIYQLYSPENCTFIYFIFHYTLFQ 118
Query: 121 HKIPSVIGKIFVQI--ELMLLKNIGFGLDLTKCVVTGVTQD 159
I S + + I LLK +G+ +L+ CV TG + +
Sbjct: 119 LNICSNNMILPIFISSLYSLLKFLGWEPELSNCVYTGESLN 159
>gi|323483768|ref|ZP_08089148.1| DNA repair protein RecO [Clostridium symbiosum WAL-14163]
gi|323692741|ref|ZP_08106969.1| DNA repair protein RecO [Clostridium symbiosum WAL-14673]
gi|323402959|gb|EGA95277.1| DNA repair protein RecO [Clostridium symbiosum WAL-14163]
gi|323503183|gb|EGB19017.1| DNA repair protein RecO [Clostridium symbiosum WAL-14673]
Length = 215
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 3/131 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLA 63
++L GE + L ++T++ G+ F R + + + + +
Sbjct: 8 TGMVLSAFPVGEYDKRLVILTKERGKITAFARGAKRPGSLLRAPSRPFAFGTFSL-AEGR 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E+ Y + + E E+ +L
Sbjct: 67 DAYNLYGAEIENYFEDLEKDMECACYASYFVEFADYYEREGIEATEMLKLLYQSFRALLR 126
Query: 124 PSVIGKIFVQI 134
P++ ++ +I
Sbjct: 127 PAIPNRLVQRI 137
>gi|123967986|ref|YP_001008844.1| putative recombination protein O [Prochlorococcus marinus str.
AS9601]
gi|123198096|gb|ABM69737.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. AS9601]
Length = 261
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE + ++ ++T + G V + + + + +
Sbjct: 10 KGLCIKASPLGENDRLITILTDEQGIVRLAVPGARRPKSSLAAATPLTYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQHDYLSCVLAHLDRIYLF 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G L + C TG
Sbjct: 129 KESQEEDIKMLSMSLQSLIHLLAIGGINLPIHHCCKTG 166
>gi|157412811|ref|YP_001483677.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9215]
gi|157387386|gb|ABV50091.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. MIT 9215]
Length = 261
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + + GE + ++ ++T + G V + + + + +
Sbjct: 10 EGLCIKTSPLGENDRLITILTDEQGIVRLAVPGARRPKSSLAAATPLTYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQQNYLSCVLAHLDRIYLY 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I + +Q + LL G L + C TG
Sbjct: 129 EISKEEDIKILSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|91070331|gb|ABE11248.1| putative recombination protein O [uncultured Prochlorococcus
marinus clone HF10-88F10]
Length = 261
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + + GE + ++ ++T + G V + + + + +
Sbjct: 10 EGLCIKASPLGENDRLITILTDEQGIVRLAVPGARRPKSSLAAAIPLTYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAASQAITELTFLLVGNNDKQQNYLSCVLAHLDRIYLY 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G L + C TG
Sbjct: 129 EESKEEDIKMLSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|332883723|gb|EGK04003.1| DNA repair protein RecO [Dysgonomonas mossii DSM 22836]
Length = 280
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 5/161 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGF---VRNGQSHRMQPILQAGNLVRVNWR 59
++ ++L +Y +K ++ ++ T +GR R S + + ++ +
Sbjct: 43 YKTRGLVLNTINYNDKYLLAQLFTESFGRVTYMVSKARGKGSKVPKSLFSPLAILDMEVE 102
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYG-LQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ +++ R + + ++ L R L + + L+D L +
Sbjct: 103 HQSNRDIQRIREARSDFYLYEIAGDMGKTSMTFFLSEFLSRVLKDADTSQLLFDFLEQSV 162
Query: 119 NCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKCVVTGVTQ 158
++ F L L +GF +L + +
Sbjct: 163 QILEMTDKSIANFHLVFMLKLSHFMGFYPNLEEYRENNLFD 203
>gi|126695756|ref|YP_001090642.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9301]
gi|126542799|gb|ABO17041.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. MIT 9301]
Length = 261
Score = 52.9 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE + ++ ++T + G V + + + + +
Sbjct: 10 KGLCIKASPLGENDRLITILTDEQGIVRLAVPGARRPKSSLAAATPLTYLGLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQQDYLSCVLAHLDRIYLF 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G L + C TG
Sbjct: 129 KESQEEDIKMLSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|255534630|ref|YP_003095001.1| DNA recombination and repair protein RecO [Flavobacteriaceae
bacterium 3519-10]
gi|255340826|gb|ACU06939.1| DNA recombination and repair protein RecO [Flavobacteriaceae
bacterium 3519-10]
Length = 230
Score = 52.9 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 3/145 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG--QSHRMQPILQAGNLVRVNW 58
M +L YG+ + +L ++ G F R ++ + L N + +
Sbjct: 1 MMQNQVCFLLSYIKYGDNDAVLHCFSKDAGYQSFFARGIYSARNKKKAYLFPLNQIGITV 60
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIF 117
R ++ + L + + L E Y + F
Sbjct: 61 VPRRNSGGIPTISKIEMVSQDYDFADVKVNTVLLFVADFLNQVLREETHHSNTYSEIGRF 120
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNI 142
LN + +++ + +
Sbjct: 121 LNALYSGDLGAYTAFIFKILSCQGL 145
>gi|254526262|ref|ZP_05138314.1| DNA repair protein RecO [Prochlorococcus marinus str. MIT 9202]
gi|221537686|gb|EEE40139.1| DNA repair protein RecO [Prochlorococcus marinus str. MIT 9202]
Length = 261
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + + GE + ++ ++T + G V + + + + +
Sbjct: 10 EGLCIKASPLGENDRLITILTDEQGIVRLAVPGARRPKSSLAAATPLTYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQQNYLSCVLAHLDRIYLY 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ I + +Q + LL G L + C TG
Sbjct: 129 EISKEEDIKILSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|297621803|ref|YP_003709940.1| putative DNA repair protein recO [Waddlia chondrophila WSU 86-1044]
gi|297377104|gb|ADI38934.1| putative DNA repair protein recO [Waddlia chondrophila WSU 86-1044]
Length = 228
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 2/143 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ + IIL + ++++ T+++G + + GQS + L + R
Sbjct: 4 IRAEGIILQSLPVKDWDLLITAFTKEFGVMKFYYKKGQSKKRSKGALTSPLTCAEFICRK 63
Query: 63 AQNLGE--FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
V++ H + Y + + R +P LY +L FL+
Sbjct: 64 GNFDLIPLNEISVIDLHIDLRKTLEFLEYSCSWLKLIQRSQLPGKPAPNLYLLLKAFLHS 123
Query: 121 HKIPSVIGKIFVQIELMLLKNIG 143
+ L LL++ G
Sbjct: 124 LPQFPKPETLHACFLLKLLRHEG 146
>gi|307719318|ref|YP_003874850.1| hypothetical protein STHERM_c16370 [Spirochaeta thermophila DSM
6192]
gi|306533043|gb|ADN02577.1| hypothetical protein STHERM_c16370 [Spirochaeta thermophila DSM
6192]
Length = 275
Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 4/155 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+ + +++ R G+++ + +++R+ G Q + A R + +
Sbjct: 25 RTEGVVVRSRPVGDQDRQVVILSRE-GLLEATAYGAQRPSSRLGAAAQVGSRAVFYLYVN 83
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
G + ++ L Q L E+Y +L + +
Sbjct: 84 PVKGHVKVSDVDRVEVLGAGRLEGLAVFQLWADLVVATHGAGHEAEVYRLLLEGRDALRR 143
Query: 124 PSVIGKIFVQIELMLLK---NIGFGLDLTKCVVTG 155
+ ++ + LL+ +G + +C G
Sbjct: 144 AGGVEEVERVLVGWLLRFLGLLGVAPEWDRCARCG 178
>gi|269123605|ref|YP_003306182.1| Recombinational DNA repair protein (RecF pathway)-like protein
[Streptobacillus moniliformis DSM 12112]
gi|268314931|gb|ACZ01305.1| Recombinational DNA repair protein (RecF pathway)-like protein
[Streptobacillus moniliformis DSM 12112]
Length = 215
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 11/211 (5%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--PILQAGNLVRVNWRS 60
D AIIL + ++++ + T+++G+ + N ++ + + + ++ V
Sbjct: 4 INDVAIILNKKEISGSSVLVTMFTKEHGKISAIIFNARNSKKKHLASIMPLSISDVELEI 63
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + +S LL L + L + L P ELY+ L
Sbjct: 64 KSNSKIIKNSILK-KSFDKSLLKIEKLQLSLYVLHSLNQVLEFDNPEEELYNKSIEILEY 122
Query: 121 HK--------IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ I V L+ +G G+ + S A
Sbjct: 123 INELDENTFLDVNFNIFILVTFLRRLMIELGIYDISQLINQYGLIDEYKDYITYSKNANL 182
Query: 173 RSVGLPYAEKMLVLPSFLWKEEQTIDADSLK 203
+ +D +
Sbjct: 183 ENTNSLITMLNCFQDYINNYFNIKLDYKKIL 213
>gi|21903732|gb|AAM78623.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 218
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 2/173 (1%)
Query: 33 LGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQ 92
+ FV++ +M I+Q + ++ + + ++ Y
Sbjct: 1 MFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRYINNDIFRLAYASY 60
Query: 93 SIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCV 152
+ + + E L+ L L+ + + E+ +L G L+ +C
Sbjct: 61 VLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECA 120
Query: 153 VTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPS--FLWKEEQTIDADSLK 203
+ T L S + +C + + P+ +L Q I D L+
Sbjct: 121 ICHRTDLPLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLR 173
>gi|300770681|ref|ZP_07080560.1| recombination protein O [Sphingobacterium spiritivorum ATCC 33861]
gi|300763157|gb|EFK59974.1| recombination protein O [Sphingobacterium spiritivorum ATCC 33861]
Length = 240
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 46/153 (30%), Gaps = 5/153 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----V 56
M + I L + +Y E +++++V T +G V + + + + +
Sbjct: 1 MLHKTKGIALKLTNYSESSVVVQVYTESFGLQSYLVNGAKKPKAKIKANLFQPLHLLELI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + L++ L +++ L++ +
Sbjct: 61 VYHKDNNNLQRISEAHQTPPLLDLPYNIIKSSIAIFLNEVLYKSLKQQQHDGFLFNFIFQ 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDL 148
+ F + L +GF ++
Sbjct: 121 SIRYLDETDHSLANFHLTFLIKLSMFLGFLPNV 153
>gi|309805276|ref|ZP_07699328.1| DNA repair protein RecO [Lactobacillus iners LactinV 09V1-c]
gi|308165510|gb|EFO67741.1| DNA repair protein RecO [Lactobacillus iners LactinV 09V1-c]
Length = 221
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 2/161 (1%)
Query: 25 MTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--QNLGEFRFEVLESHCAKLL 82
MT + G ++ G + + + N N+ ++V+
Sbjct: 1 MTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCGLSVLRNYKVVHQLEHIYF 60
Query: 83 SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNI 142
Y + + + +P + Y ++ L I +EL LL
Sbjct: 61 DFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEGIDNEIICQMVELKLLSAF 120
Query: 143 GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
G + CV +Q + S + GG VC++ +M
Sbjct: 121 GTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 161
>gi|288871673|ref|ZP_06118541.2| DNA repair protein RecO [Clostridium hathewayi DSM 13479]
gi|288862487|gb|EFC94785.1| DNA repair protein RecO [Clostridium hathewayi DSM 13479]
Length = 223
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 1/117 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L GE + L ++T++ G+ F R + + + ++
Sbjct: 11 TGMVLKAVPSGEMDKRLVILTKERGKVTAFARGARRPGSMLMACGRPFAFGQFTLYEGRD 70
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + ++ +L + YG + + E + +L +
Sbjct: 71 AYSLQSAEISNYFDELSTDVEGTCYGSYFLEFSDYYTRENMDGTAMLKLLYQSVRAL 127
>gi|225619303|ref|YP_002720529.1| putative D repair protein recO [Brachyspira hyodysenteriae WA1]
gi|225214122|gb|ACN82856.1| putative D repair protein recO [Brachyspira hyodysenteriae WA1]
Length = 260
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 26/261 (9%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M +A IL Y +II +T + S L++ + + +N
Sbjct: 1 MIKNTNAFILSYNQYKTSSIIASFLTENS-IMQAICHKAKNNSKAFGSDLESISKLNINI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM--LNI 116
+ L + + + L S + I + + + M
Sbjct: 60 YEKKENQLSILKESSIIKNYKILEKSIYSSLAVFYIREVLLYCAKDFDNRYFVLMEKTLD 119
Query: 117 FLNCHKIPSVIGKIFVQI--------ELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSG 168
L + KI E+ L G L KC + G D+ + S G
Sbjct: 120 ALESLEEHYNDDKIKKIYINILIRAFEMKTLHIAGISPHLDKCTICGNNNDISYYSILEG 179
Query: 169 GAVCRSVGLPYAEKMLVL-----------PSFLWKEEQTIDADSLK-SAFQLTDYFLNKY 216
G +C+ + + ++ + L + + D + + Y +NK
Sbjct: 180 GLICQKCRNLIKDSINIMDYDIAFMRIIKHTSLIEIIKNEDLKKIYNDSIDNVKYIMNKS 239
Query: 217 ALQHNIIHCHLLRENFLGKLL 237
H + LL
Sbjct: 240 IFNHINKTI-KSQSVLEEILL 259
>gi|227539207|ref|ZP_03969256.1| possible DNA repair protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227240889|gb|EEI90904.1| possible DNA repair protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 240
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 46/153 (30%), Gaps = 5/153 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR----V 56
M + I L + +Y E +++++V T +G V + + + + +
Sbjct: 1 MLHKTKGIALKLTNYSESSVVVQVYTESFGLQSYLVNGAKKPKAKIKANLFQPLHLLELI 60
Query: 57 NWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + L++ L +++ L++ +
Sbjct: 61 VYHKDNNNLQRISEAHQTPPLLDLPYNIVKSSIAIFLNEVLYKSLKQQQHDGFLFNFIFQ 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDL 148
+ F + L +GF ++
Sbjct: 121 SIRYLDETDHSLANFHLTFLIKLSMFLGFLPNV 153
>gi|315653577|ref|ZP_07906497.1| DNA repair protein RecO [Lactobacillus iners ATCC 55195]
gi|315488939|gb|EFU78581.1| DNA repair protein RecO [Lactobacillus iners ATCC 55195]
Length = 221
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 2/161 (1%)
Query: 25 MTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA--QNLGEFRFEVLESHCAKLL 82
MT + G ++ G + + + N N+ ++V+
Sbjct: 1 MTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCGLSVLRNYKVVHQLEHIYF 60
Query: 83 SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNI 142
Y + + + +P + Y ++ L I +EL LL
Sbjct: 61 DFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALMKINEGIDNEIICQMVELKLLSAF 120
Query: 143 GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
G + CV +Q + S + GG VC++ +M
Sbjct: 121 GTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRM 161
>gi|212550407|ref|YP_002308724.1| DNA repair protein RecO [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|254790508|sp|B6YQ41|RECO_AZOPC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|212548645|dbj|BAG83313.1| DNA repair protein RecO [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 241
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 5/156 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR---MQPILQAGNLVRVN 57
M ++ AI L +Y + I+ V+T ++G + + + +LV +
Sbjct: 1 MLYKTKAITLYNINYNDNYSIVHVLTEEFGPVSYLTAKFKKQKTHLSKSFFHPLSLVELE 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY-GLQSIVPLFRFLPEREPCLELYDMLNI 116
+ + + + LL++ + + + + L E++ L++ +
Sbjct: 61 VEHKNLREIQYIKEAKTYIPLVSLLNNPIKSSICIFLAEFISKALKEKQSDKLLFNYILQ 120
Query: 117 FLNCHKIPSVIGKIFVQ-IELMLLKNIGFGLDLTKC 151
+ + F + L + +GF + T
Sbjct: 121 SIQVLEFIEKNYSNFHLVFTIRLSQFLGFYPNNTDY 156
>gi|302385325|ref|YP_003821147.1| DNA repair protein RecO [Clostridium saccharolyticum WM1]
gi|302195953|gb|ADL03524.1| DNA repair protein RecO [Clostridium saccharolyticum WM1]
Length = 221
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 1/130 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ V GE + L ++TR+ G+ F R + + + + ++
Sbjct: 8 TGMVIRVSPVGEMDKRLVILTRERGKITAFARGSRRPGSPLMAVSRPFAFGQFSLYEGRD 67
Query: 66 LGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
R + ++ A L YG + + E L +L + P
Sbjct: 68 SYTLRSAEIINYFDALSLDMEGTCYGSYFLELADYYARENMDGTGLLKLLYQSIRALLKP 127
Query: 125 SVIGKIFVQI 134
++ ++ ++
Sbjct: 128 ALKNQLVQRV 137
>gi|255012606|ref|ZP_05284732.1| hypothetical protein B2_01764 [Bacteroides sp. 2_1_7]
Length = 241
Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 4/138 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVN 57
M + I+L Y +K I+ + T +GR V R +S + + +++ +
Sbjct: 1 MLCKTRGIVLHTIPYNDKYSIIYMYTEAFGRASYLVSRSRGKKSTVSKALFIPLSVLEME 60
Query: 58 WRSRLAQNLGEFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNI 116
++L + + + + L LFR + + EP L+D L
Sbjct: 61 VEHLNKRDLHRIKETRICFPLNDVCCDPVKNVLALFLSEVLFRVVKDTEPDPRLFDYLYE 120
Query: 117 FLNCHKIPSVIGKIFVQI 134
++ + F +
Sbjct: 121 SIHLLEYADKGIANFHMV 138
>gi|325971473|ref|YP_004247664.1| DNA repair protein recO [Spirochaeta sp. Buddy]
gi|324026711|gb|ADY13470.1| DNA repair protein recO [Spirochaeta sp. Buddy]
Length = 251
Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 2/151 (1%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
AI+L + +G+ N L++++ +G + + +
Sbjct: 4 NVSSLAIVLHSQRHGQLNRRLKLLSVDFGIIDVISYGARKSLKSVKAEVFTDAQFFLYYN 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + + + + Y L E E Y +L+ L+
Sbjct: 64 PVKKDYTLKDAQVVATHDDIRDDLSRTYCALFFCELLLKTNGGESAGE-YQLLSTALDML 122
Query: 122 -KIPSVIGKIFVQIELMLLKNIGFGLDLTKC 151
P +I +Q L +G DLT C
Sbjct: 123 TAFPKRTDQILIQFVHRLTDLLGLRTDLTSC 153
>gi|239627752|ref|ZP_04670783.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517898|gb|EEQ57764.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 216
Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 14/198 (7%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L G+ + L ++TR+ GR F + + + + ++
Sbjct: 8 TGMVLISAPSGDYDRRLVLLTRERGRITAFAHGARKPGNPLMASSRPFSFGTFTLYEGRS 67
Query: 66 LGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + ++ L YG + F E EL +L L P
Sbjct: 68 AYNLQSSQIANYFDGLSLDMECTCYGSYFLEVADYFSQENMDGTELLKLLYQSLRALLNP 127
Query: 125 SVIGKIFVQ-IELMLLKNIGFG------LDLTKC------VVTGVTQDLLWVSPKSGGAV 171
S+ ++ + EL + G C VV + L K
Sbjct: 128 SIPNRLARRVFELKSMVINGEYTEEPPRPVSESCSYAWEYVVCSQVESLYKFILKDDVMR 187
Query: 172 CRSVGLPYAEKMLVLPSF 189
+ + + V F
Sbjct: 188 EFESVVEASRRYYVRHEF 205
>gi|291563936|emb|CBL42752.1| DNA replication and repair protein RecO [butyrate-producing
bacterium SS3/4]
Length = 217
Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+++ GE + L ++T + G+ F R + + + V + ++
Sbjct: 8 TGMVIKSAPAGEYDRRLVILTCERGKITAFARGARRPGSTLMAASAPFVFGTFALYEGRD 67
Query: 66 LGEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++++ ++ YG + + E +E +L L
Sbjct: 68 AYSLVSVDVQNYFREITEDMEAACYGSYFLEFADYYGRENLEAVETLKLLYQSLRALLKS 127
Query: 125 SVIGKIFV-QIELMLLKNIGFGLD 147
++ ++ EL L++ G ++
Sbjct: 128 AIPNRLVRAVFELKLMEINGEYME 151
>gi|302335753|ref|YP_003800960.1| DNA replication and repair protein RecO [Olsenella uli DSM 7084]
gi|301319593|gb|ADK68080.1| DNA replication and repair protein RecO [Olsenella uli DSM 7084]
Length = 250
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 6/184 (3%)
Query: 3 WQDDAIIL-GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RS 60
++ AI++ E+++IL ++ + + + ++ +
Sbjct: 7 YRTKAIVVDRRTRLKEQDLILVLLAEDGSEKSVVAKGALKPGGRLAARVDFFGETDFLLA 66
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R +H A + LY + + L
Sbjct: 67 RGRSLDVVAEASSTNAHLAIRGDLARMSAASAICEVARLTCFADVRDPFLYPICSRALCA 126
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ G + + LK + G+ +L C G +D+ + S SGG +C S
Sbjct: 127 CEEAGDQGHLDLVAAAYALKVLAHGGWRPELRFCTSCGD-EDVAFFSVASGGMLCASCAK 185
Query: 178 PYAE 181
A
Sbjct: 186 DVAG 189
>gi|332300655|ref|YP_004442576.1| hypothetical protein Poras_1475 [Porphyromonas asaccharolytica DSM
20707]
gi|332177718|gb|AEE13408.1| hypothetical protein Poras_1475 [Porphyromonas asaccharolytica DSM
20707]
Length = 243
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWR 59
M + I+L V Y ++++I + T +G V G+S + Q +++
Sbjct: 1 MITTVEGIVLRVIPYSDRSLIATLYTDLWGATAFSVPIGGRSRATSNLFQPLRGLQITTP 60
Query: 60 SRLAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
S +Q + R L + Y L L L + L LY+++ L
Sbjct: 61 SPASQPVKLIRQVQLVRGALPLAQRPAASGYFLYLSQLLRELLAQEPEDLHLYNIVAQAL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNI---GFGLD 147
+ ++ +L+ + G+ +
Sbjct: 121 EQLDGMETLEELQGFDLALLVSILRAKGYLPE 152
>gi|88797950|ref|ZP_01113537.1| DNA repair protein [Reinekea sp. MED297]
gi|88779147|gb|EAR10335.1| DNA repair protein [Reinekea sp. MED297]
Length = 227
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 10/177 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++ R GE + + T + G + + W R +
Sbjct: 10 HGYLIHHRPVGEHRYLAWLFTAEQGLVRTLATGQVPEKAR---------LAEWSLRTREQ 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
R + + + + L LFR P L+ + L P
Sbjct: 61 ESRLRDFRFTAPR-LVQTQAACFLTLYVHELLFRLAPVGIGETTLFQSFSACLVHLNYPD 119
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
E LL+ +G G+D V Q + +S Y +
Sbjct: 120 RQVLALRTFEAELLRALGQGIDYRFDVQQRPIQFDQRYEFHAQQGFDQSGQGLYTGQ 176
>gi|315652501|ref|ZP_07905485.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315485217|gb|EFU75615.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 214
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 7/103 (6%), Positives = 33/103 (32%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ I++ G+ + + + T++ G+ F + + Q + A ++
Sbjct: 4 NIELTGIVIKSMPVGDFDRRVTIFTKERGKIYAFAKGARRINNQMMGYARIFAYGKFKLY 63
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER 104
++ + ++ ++ + + + +
Sbjct: 64 EGRDSYNIISADIANYFEEISDDIESTCYGTYFLEMLDYYTKE 106
>gi|313886765|ref|ZP_07820472.1| putative DNA repair protein RecO [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923806|gb|EFR34608.1| putative DNA repair protein RecO [Porphyromonas asaccharolytica
PR426713P-I]
Length = 243
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWR 59
M + I+L V Y ++++I + T +G V G+S + Q +++
Sbjct: 1 MITTVEGIVLRVIPYSDRSLIATLYTDLWGATAFSVPIGGRSRATSNLFQPLRGLQITTP 60
Query: 60 SRLAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
S +Q + R L + Y L L L + L LY+++ L
Sbjct: 61 SPASQPVKLIRQVQLVRGALPLAQRPAASGYFLYLSQLLRELLAQEPEDLHLYNIVAQAL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNI---GFGLD 147
+ K+ +L+ + G+ +
Sbjct: 121 EQLDGMETLEKLQGFDLALLVSILRAKGYLPE 152
>gi|183221473|ref|YP_001839469.1| DNA repair protein RecO [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911560|ref|YP_001963115.1| recombinational DNA repair protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|254764639|sp|B0SB31|RECO_LEPBA RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|254764640|sp|B0SSV3|RECO_LEPBP RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|167776236|gb|ABZ94537.1| Recombinational DNA repair protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779895|gb|ABZ98193.1| DNA repair protein RecO (Recombination protein O) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 249
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 79/245 (32%), Gaps = 9/245 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPIL--QAGNLVRVNWRSR 61
++ II+ + GE + ++ + R + + + + I+ + G LV V++ +
Sbjct: 5 KEIGIIIQSKDIGESDRLISLAGETQVRMNFISKGIRKSKRRAIISTELGCLVEVDYYDQ 64
Query: 62 LA-QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ +++ + L+ L + P+ E LY +L+ L
Sbjct: 65 VEKDWKSTKEIHLIKRYDELKKDYVGTLFVLYLTELTSQLYPDGENHPFLYQLLSGSLEV 124
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV---TQDLLWVSPKSGGAVCRSVGL 177
+I +L L ++G C G T+ + S S +C
Sbjct: 125 SNENGFRKEILPFFKLRALTHMGHFPTEFYCHTCGEEVLTKAKAYFSVDSREFLCSDCHP 184
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSL---KSAFQLTDYFLNKYALQHNIIHCHLLRENFLG 234
+ + VL F + + K A + L+ + F
Sbjct: 185 ITKDHLPVLKLFHTMLSKKFSNVLVIFPKEAEYREGDMILNQFLRSLLGRELKSYFEFYK 244
Query: 235 KLLEL 239
+ +L
Sbjct: 245 TIGDL 249
>gi|91069838|gb|ABE10770.1| putative recombination protein O [uncultured Prochlorococcus
marinus clone ASNC1092]
Length = 261
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/162 (10%), Positives = 49/162 (30%), Gaps = 9/162 (5%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRS 60
++ + + GE + ++ ++T + G V + + + +
Sbjct: 6 EYRLKGLCIKASPLGENDRLITILTDEKGILRLAVPGARRPKSSLAAATPLTYLSLQIFG 65
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + ++L+S+ + F + + + + L+
Sbjct: 66 KRNLKS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQQDYLSCVLAHLDR 124
Query: 121 H-------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G L + C TG
Sbjct: 125 IYLYKESQEEDIKMLSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|77408837|ref|ZP_00785565.1| recombination protein O [Streptococcus agalactiae COH1]
gi|77172568|gb|EAO75709.1| recombination protein O [Streptococcus agalactiae COH1]
Length = 88
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 31/74 (41%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
Q ++L R+Y E + ++++ T G+ + FV++ + +LQ + +
Sbjct: 5 QTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDN 64
Query: 64 QNLGEFRFEVLESH 77
++ + +
Sbjct: 65 GLSYIDDYKEVLAF 78
>gi|91069973|gb|ABE10901.1| putative recombination protein O [uncultured Prochlorococcus
marinus clone ASNC2259]
Length = 261
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE + ++ +++ + G V + + + + +
Sbjct: 10 KGLCIKASPLGENDRLITILSDEQGIVRLAVPGARRPKSSLAAATPLTYLSLQIFGKRNL 69
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + + L+
Sbjct: 70 KS-VRQIKILKSYSGLGKNIECLAAAQAITELTFLLVGNNDKQQDYLSCVLAHLDRIYLF 128
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G L + C TG
Sbjct: 129 KESQEEDIKMLSMSIQSLIHLLAIGGINLPIHHCCKTG 166
>gi|257125641|ref|YP_003163755.1| DNA repair protein RecO [Leptotrichia buccalis C-1013-b]
gi|257049580|gb|ACV38764.1| DNA repair protein RecO [Leptotrichia buccalis C-1013-b]
Length = 231
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 3/135 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWR 59
+ + IIL + E ++ + + +++YG+ + + + + I L N V +
Sbjct: 3 IIKTNCIILKKKEMREADLQVTLFSKEYGKIMATAYGIRKSKKRNIVSLNPLNKVEITLL 62
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ E++++ S L + + + + +D L L+
Sbjct: 63 EKN-GYYVIKDVEIMKNFKNIPKSIEKLEISLYILDSIDKIYYMTDENGNFFDKLVEILS 121
Query: 120 CHKIPSVIGKIFVQI 134
I I K +
Sbjct: 122 FIDILPYIKKGYKYY 136
>gi|50365083|ref|YP_053508.1| DNA repair/recombination protein [Mesoplasma florum L1]
gi|81612911|sp|Q6F1J9|RECO_MESFL RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|50363639|gb|AAT75624.1| DNA repair/recombination protein [Mesoplasma florum L1]
Length = 267
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 51/197 (25%), Gaps = 4/197 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNWRSRLA 63
I+L +Y E + I+ V + ++G+ S + L +
Sbjct: 7 RGIVLDSLNYEENDKIITVYSDEFGKLSFIALGANKASSKNNYSLNVFSESDFEIFKSRK 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL--YDMLNIFLNCH 121
+ ++ S Y SI+ E + +DML +
Sbjct: 67 TQSISKLKTGILVRNNFKIAKSYNNYLFASIISSVILQEELFYNKDFKLFDMLREAIRNI 126
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
V LKN G +L KC + + + E
Sbjct: 127 NDEVNPFSNMVWFLFYSLKNFGGYWELNKCYRCNKASKIYRKFDLQHYGLVCPNCINENE 186
Query: 182 KMLVLPSFLWKEEQTID 198
+ + + +
Sbjct: 187 EEHDYEFIKYLQRMDNN 203
>gi|168335122|ref|ZP_02693230.1| DNA repair protein RecO [Epulopiscium sp. 'N.t. morphotype B']
Length = 249
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 53/185 (28%), Gaps = 4/185 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M A+++ + GE + + + ++G+ + + + V N+
Sbjct: 1 MILSMKALVIKEFTVGEGDKYIALFGDKFGKIDVSAKGAKHYNRGLASGTQLFVYGNFSV 60
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ ++ + + L L I + + + L ++
Sbjct: 61 KKTRDTYKLLNVEIIKSFHNLRQDITTLSYASFIAEFLNEVTQENSSNKNLLTLTLYTLH 120
Query: 121 HKIPSV--IGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
I E+ +K +G+ ++ C DL ++ + A G
Sbjct: 121 ELTKHRLSAKLIRFVFEMRAMKYLGYLPNVYSCTNCET--DLHYLDKHTRYAFSIEDGGL 178
Query: 179 YAEKM 183
Sbjct: 179 LCNNC 183
>gi|228470848|ref|ZP_04055695.1| hypothetical protein PORUE0001_1087 [Porphyromonas uenonis 60-3]
gi|228307415|gb|EEK16425.1| hypothetical protein PORUE0001_1087 [Porphyromonas uenonis 60-3]
Length = 243
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWR 59
M + ++L V Y ++++I + T +G V G+S + Q +++
Sbjct: 1 MITTVEGVVLRVIPYSDRSLIATLYTDLWGAAAFSVPIGGRSRATSNLFQPLRGLQLTTP 60
Query: 60 SRLAQNLGEFRFEVLESHC-AKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
S +Q + R L + Y L L L + L LY+++ L
Sbjct: 61 SPASQPVKLIRQVQLVRGALPLAQRPAASGYFLYLAQLLRELLAQEPEDLRLYNIIVQAL 120
Query: 119 NCHKIPSVIGKIFVQIELMLLKNI---GFGLD 147
+ + ++ +L+ + G+ +
Sbjct: 121 DQLDRIESLEELQGFDLALLVSILRAKGYLPE 152
>gi|282892069|ref|ZP_06300546.1| hypothetical protein pah_c205o108 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498111|gb|EFB40453.1| hypothetical protein pah_c205o108 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 225
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 8/204 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++ + +IL + YGE N IL V +++ G FV+ + L + R
Sbjct: 3 EFKVEGLILKMLPYGEGNHILNVFSKENGLISLFVK---KQKKISHFLISPLTHAEFVLR 59
Query: 62 LAQNLGEFRFE--VLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ E L S F + L + LYD+L +L+
Sbjct: 60 PGKGELYPCEEISPLSSFLKIREKIESFEAAFHILNALTLSQYPHKSGPYLYDLLIRYLH 119
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP---KSGGAVCRSVG 176
+ L L++ G C + S
Sbjct: 120 EIPSSPNAQNLATSFLLKTLRHEGIFGLSEVCTTCQTLLGNTCYAYGGESYCFDHSPSHA 179
Query: 177 LPYAEKMLVLPSFLWKEEQTIDAD 200
+ + L FL D
Sbjct: 180 FALSPEELHSLLFLAFCRILPDIS 203
>gi|218282281|ref|ZP_03488580.1| hypothetical protein EUBIFOR_01162 [Eubacterium biforme DSM 3989]
gi|218216749|gb|EEC90287.1| hypothetical protein EUBIFOR_01162 [Eubacterium biforme DSM 3989]
Length = 240
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/243 (10%), Positives = 63/243 (25%), Gaps = 12/243 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M + A++L V Y +K+ +++V+T + R + + +
Sbjct: 1 MKTKIQALVLSVSEYKDKDGLVKVLTTDS-ILTLYARGLFKQNSKNLRLVQPFSYNEFMI 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + + L + +L+++L N
Sbjct: 60 EDKTKMPLLLQGQTIRYYYHIQEDLFKSSCCFVLHDLISKTKKE---EKLFNILLDCWNS 116
Query: 121 HKIPSVIGKIF-VQIELMLLKNIGFGLDLTKCVVTGV--TQDLLWVSPKSGGAVCRSVGL 177
+ + ++ G + CV + L C
Sbjct: 117 ANQNLDDFYFWACIVLKYCIEQEGIQPFVDGCVHCQNMRVETLSLKDGGFLCEKCNHNQY 176
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY---FLNKYALQHNIIHCHLLRENFLG 234
P + + + + +K F +L K+ H+ FL
Sbjct: 177 PKWNVDSLKKYRALFKCKEENLAYVKEHFTFNLDDLIYLAKWVEYHSQKSYPS--IRFLE 234
Query: 235 KLL 237
+
Sbjct: 235 SIR 237
>gi|238853404|ref|ZP_04643783.1| DNA repair protein RecO [Lactobacillus gasseri 202-4]
gi|238833976|gb|EEQ26234.1| DNA repair protein RecO [Lactobacillus gasseri 202-4]
Length = 223
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 2/169 (1%)
Query: 25 MTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL--AQNLGEFRFEVLESHCAKLL 82
MT+ +G VR + + N + F+ ++ L
Sbjct: 1 MTKDHGIFTIDVRGALRPKSRLGAATLNFSYGKYIVNTNWKGISSLRTFKDVKQLDQLYL 60
Query: 83 SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNI 142
+ Y + L E + YD++ L + I ++L LL
Sbjct: 61 DLTKNAYSSYVLDLLDHAFVEYKDIGSFYDLIMKALLKINSGEDVAVITQMVQLKLLNAY 120
Query: 143 GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLW 191
G L +C++ G Q S + GG +C +++M + P +
Sbjct: 121 GVAPQLDRCLICGKVQGTFDYSLELGGIICSDHFNSVSQRMHLDPKVVA 169
>gi|325281143|ref|YP_004253685.1| DNA repair protein RecO [Odoribacter splanchnicus DSM 20712]
gi|324312952|gb|ADY33505.1| DNA repair protein RecO [Odoribacter splanchnicus DSM 20712]
Length = 237
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 46/182 (25%), Gaps = 2/182 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRN-GQSHRMQPILQAGNLVRVNWRSRLAQ 64
IIL Y E I+ + T++ G + + + + + + +
Sbjct: 5 QGIILKTSPYSETQKIIRIYTKEKGYLSMISPSVVFKRKTKTVHLLQISEIEFFENEKSD 64
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ + + L L L EL+D L +
Sbjct: 65 LHKLRQISPIINLPELYFDIFKMNILLLWGEILNLILKNEGKNEELFDYLTHSIEYLNST 124
Query: 125 SVIGKIFV-QIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKM 183
F L IGF ++ + V S A G A+ +
Sbjct: 125 HNDIGNFNLYFLYRLAGFIGFRINTSSWQENYVFNINNGSFYPSDPATPYISGPNTAKII 184
Query: 184 LV 185
Sbjct: 185 YQ 186
>gi|159902937|ref|YP_001550281.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9211]
gi|159888113|gb|ABX08327.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. MIT 9211]
Length = 266
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 6/151 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ L V GE + +L +++ Q G V + + + + +
Sbjct: 8 QGLSLKVGPLGENDRLLTILSAQEGIVRLAVPGARRPKSSLSATTPLTFLELQIGGKTGL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ ++L+S S + +P + I L +
Sbjct: 68 RR-VNQIKILKSFSKLGESLETLAAAQVIAELSILLVGANDPQPGILKAALIHLERLESK 126
Query: 125 S----VIGKIFVQIELMLLKNIGFGLDLTKC 151
+Q + LL G+ L + +C
Sbjct: 127 QTGTLFTLANCIQSCVHLLALGGYNLPIQEC 157
>gi|317969068|ref|ZP_07970458.1| putative recombination protein O [Synechococcus sp. CB0205]
Length = 66
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNW 58
+ ++L GE + ++ +++ + G + + P L W
Sbjct: 8 EGLVLRSSPLGESDRLITLLSNEEGLIRLAAPGARKPKSSLPPLCPWRSSACRW 61
>gi|331002902|ref|ZP_08326415.1| DNA repair protein RecO [Lachnospiraceae oral taxon 107 str. F0167]
gi|330413195|gb|EGG92569.1| DNA repair protein RecO [Lachnospiraceae oral taxon 107 str. F0167]
Length = 214
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 10/144 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I++ G+ + + + T++ G+ F R + Q R+ +
Sbjct: 8 TGIVIKSMPIGDFDRRVTIFTKERGKVYAFARGARRINN----QMMGFARIFAYGKFKLF 63
Query: 66 LGEFRFEVLESHCAKLL-----SSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
G + ++ + A YG + L ++ E +E ++ L+
Sbjct: 64 EGRDSYNIVNADIANYFEEVNSDIESTCYGTYFLEMLDYYIKEALVDIESLKLIYYTLSA 123
Query: 121 H-KIPSVIGKIFVQIELMLLKNIG 143
K + EL L+ G
Sbjct: 124 LTKKSIPNRLVRRIFELKLMTING 147
>gi|328955431|ref|YP_004372764.1| DNA replication and repair protein RecO [Coriobacterium glomerans
PW2]
gi|328455755|gb|AEB06949.1| DNA replication and repair protein RecO [Coriobacterium glomerans
PW2]
Length = 266
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 26/197 (13%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGR-HLGFVRNGQSH--RMQPILQAGNLVRVNWRSRLAQ 64
I+L E ++IL ++ + GR + + R+ + V + +
Sbjct: 12 IVLDKTRLAETDLILTLL-AEDGRQIRAIAKGARRPGGRLAARCELACDVDLLLACGRSL 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++ ++ S + E ++ + L+
Sbjct: 71 DI-VSEARMIASPLGAAPDLPVLAAASALTEVAKLNCFEDAEDPFIFPITRCALDVAAAA 129
Query: 125 S--------------------VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVS 164
+ I L+ ++G+ D T CV+ G T DL + S
Sbjct: 130 GRRARSASGGVAPASDPLVAAHLDLIVAAYVFKLMSHMGYRPDCTACVLCGDT-DLTYFS 188
Query: 165 PKSGGAVCRSVGLPYAE 181
+GG +C S
Sbjct: 189 AAAGGLLCSSCAASVTS 205
>gi|193216526|ref|YP_001999768.1| recombinational DNA repair protein O [Mycoplasma arthritidis
158L3-1]
gi|193001849|gb|ACF07064.1| recombinational DNA repair protein O [Mycoplasma arthritidis
158L3-1]
Length = 220
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 7/196 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M +Q AIIL + E + ILEV++ + G F + + + + L NLV +
Sbjct: 1 MEFQLKAIILKKTNINEYDEILEVLS-EQGHLQVFCPSTRKPTSKNKLSLLPLNLVSLEL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + R + + A L+ S+L + + + L L D L
Sbjct: 60 I-KSKYATLKPRLKRATTIKAFLVKSNLINMANDLLYFFSKI--KDTDSLILLDCYEEQL 116
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + I LL G CV G L+ GG +C
Sbjct: 117 DNLDKNKDTKVL-DFILFRLLMIEGIDPKTDGCVECGRLDRLVDFQFHKGGFLCSDHSDK 175
Query: 179 YAEKMLVLPSFLWKEE 194
K + F +
Sbjct: 176 LLGKSNLEALFYLSQS 191
>gi|300871806|ref|YP_003786679.1| putative DNA repair protein RecO [Brachyspira pilosicoli 95/1000]
gi|300689507|gb|ADK32178.1| putative DNA repair protein, RecO [Brachyspira pilosicoli 95/1000]
Length = 261
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 71/247 (28%), Gaps = 24/247 (9%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M +A IL +Y +II +T++ + S L++ + + +N
Sbjct: 1 MIKNYEAFILSYNNYKNSSIIASFLTKKN-IISSICYQAKKNSKAFGSDLESISKLNINI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + +L + + + L S + I L + + M
Sbjct: 60 YEKKSDSLSILKESNIIKNYNILEKSIYSSLAVFYIRELLLYFAKDFDERYFILMDKTLY 119
Query: 119 NCHKIPSVIGKIFVQI--------ELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
+ + E+ LL G L CV+ ++ + S GG
Sbjct: 120 SLEENEKQNQDNLKYYINILLRAFEIKLLYIAGLSPLLDNCVLCE-RENANYYSINEGGL 178
Query: 171 VCRSVGLPYAE------------KMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYAL 218
+C + + + K++ S L + ++ L K
Sbjct: 179 ICNNCKINIKDAMELDYNDIVFMKIIKHSSMLDIVKNNDIIKFYNNSISTIRDILQKSIY 238
Query: 219 QHNIIHC 225
H
Sbjct: 239 NHIHREL 245
>gi|42524457|ref|NP_969837.1| hypothetical protein Bd3065 [Bdellovibrio bacteriovorus HD100]
gi|39576666|emb|CAE80830.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio
bacteriovorus HD100]
Length = 186
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 6/132 (4%)
Query: 14 SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ---PILQAGNLVRVNWRSRLAQNLGE-- 68
Y E ++IL ++ Q + R + + +L+ + V + ++ +
Sbjct: 2 KYSESDLILHAISTQGEKLSFMARGALKSKKRFGGGVLEPTHFVSLTYKQSAEEGKLHVL 61
Query: 69 FRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL-YDMLNIFLNCHKIPSVI 127
++ L + + + E + E +++L L +
Sbjct: 62 QEATLINDFAGLRTDYDRLELALHILECVSKVSQEGDRHSEFLFNLLGHTLRALETAQDP 121
Query: 128 GKIFVQIELMLL 139
+ + L L
Sbjct: 122 LIVKMHFYLKFL 133
>gi|18310996|ref|NP_562930.1| DNA repair protein RecO [Clostridium perfringens str. 13]
gi|110800456|ref|YP_696694.1| DNA repair protein RecO [Clostridium perfringens ATCC 13124]
gi|110803552|ref|YP_699295.1| DNA repair protein RecO [Clostridium perfringens SM101]
gi|168204747|ref|ZP_02630752.1| DNA repair protein RecO [Clostridium perfringens E str. JGS1987]
gi|168208716|ref|ZP_02634341.1| DNA repair protein RecO [Clostridium perfringens B str. ATCC 3626]
gi|168212949|ref|ZP_02638574.1| DNA repair protein RecO [Clostridium perfringens CPE str. F4969]
gi|168215641|ref|ZP_02641266.1| DNA repair protein RecO [Clostridium perfringens NCTC 8239]
gi|169343745|ref|ZP_02864744.1| DNA repair protein RecO [Clostridium perfringens C str. JGS1495]
gi|182624416|ref|ZP_02952200.1| DNA repair protein RecO [Clostridium perfringens D str. JGS1721]
gi|119361454|sp|Q0TNU6|RECO_CLOP1 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|119361455|sp|Q0SRG2|RECO_CLOPS RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|18145678|dbj|BAB81720.1| probable DNA repair protein [Clostridium perfringens str. 13]
gi|110675103|gb|ABG84090.1| DNA repair protein RecO [Clostridium perfringens ATCC 13124]
gi|110684053|gb|ABG87423.1| DNA repair protein RecO [Clostridium perfringens SM101]
gi|169298305|gb|EDS80395.1| DNA repair protein RecO [Clostridium perfringens C str. JGS1495]
gi|170663629|gb|EDT16312.1| DNA repair protein RecO [Clostridium perfringens E str. JGS1987]
gi|170713181|gb|EDT25363.1| DNA repair protein RecO [Clostridium perfringens B str. ATCC 3626]
gi|170715476|gb|EDT27658.1| DNA repair protein RecO [Clostridium perfringens CPE str. F4969]
gi|177910419|gb|EDT72796.1| DNA repair protein RecO [Clostridium perfringens D str. JGS1721]
gi|182382418|gb|EDT79897.1| DNA repair protein RecO [Clostridium perfringens NCTC 8239]
Length = 225
Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 4/191 (2%)
Query: 21 ILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQNLGEFRFEVLESHCA 79
+L + T + G+ + + + + L ++ + ++ S
Sbjct: 1 MLWIFTEKMGKITAIAKGAKKSKSKLFSLTHPLCYGDYLLFKGKGLYRLSEGKIRTSFQT 60
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP-SVIGKIFVQIELML 138
L Y + L + E LY L + EL L
Sbjct: 61 SLTDLEKLTYASYLCELIDISLQDEEENFNLYKEFITCLYLINTEAISYELLIRAFELKL 120
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTID 198
LK G+GL CV L + S E L + + + ++
Sbjct: 121 LKYTGYGLRFDNCVFC--KNKLSVSNYISLRYFGGVCDKCPKEHGLYINKATYNALRFLN 178
Query: 199 ADSLKSAFQLT 209
SL ++LT
Sbjct: 179 NTSLDKVYRLT 189
>gi|148238912|ref|YP_001224299.1| DNA repair protein RecO [Synechococcus sp. WH 7803]
gi|254790795|sp|A5GJ87|RECO_SYNPW RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|147847451|emb|CAK23002.1| DNA repair protein RecO [Synechococcus sp. WH 7803]
Length = 270
Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 10/159 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ L V GE + +L +++ G V + R + + R
Sbjct: 8 QGLALKVGPLGEHDRLLTLLSDDVGVVRLAVPGARRPRSSLAAAVPLTCLDLQVVGRRGL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ VL S+ + +P L + + I L+ +
Sbjct: 68 AR-VRQLRVLRSYSGLGQRLDTLASAQALAELAIALVSSDDPVPGLLEAVLIHLDRLERL 126
Query: 125 SV--------IGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
S VQ + LL G+GL L C +G
Sbjct: 127 SRTPGEEADLCLANVVQAGVHLLALGGYGLPLQACCRSG 165
>gi|123965695|ref|YP_001010776.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9515]
gi|123200061|gb|ABM71669.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. MIT 9515]
Length = 259
Score = 49.0 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE ++ V+T + G + + + + +
Sbjct: 8 KGLCIKASPLGESGRLITVLTDEQGIIRLAAPGARRPKSSLAAATPLTYLSFQIFGKRSL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + L I L+
Sbjct: 68 KS-VRQIKILKSYNGLGKNIECLAAAQAITELTFLLVGNNDKQKDYLPSLLIHLDRIYEY 126
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G + + C TG
Sbjct: 127 KIESEDDFKMLSMSIQSLIHLLAIGGINIPVNFCCSTG 164
>gi|225849886|ref|YP_002730120.1| DNA repair protein RecO [Persephonella marina EX-H1]
gi|225645184|gb|ACO03370.1| DNA repair protein RecO [Persephonella marina EX-H1]
Length = 231
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 4/170 (2%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQA--GNLVRVNWR 59
++D+AI+L GE ++ + V R++G+ ++ GQ + I N + +
Sbjct: 4 IFKDEAIVLRRSFAGEYDLSVTVYFRKHGKENIYIPKGQLLKSPFITSTEQFNWFKGVFL 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
R LF R++ P +L+ L
Sbjct: 64 YRKENVFIREIDSFKNLSLQIASDLDLFETAYYFSNLFNRYVI--FPDEKLFIFLKKSFY 121
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGG 169
+ V L+ G L C V G + S
Sbjct: 122 YLTKAKKVKNHRVNFIAKLVYLSGVFPQLDHCSVCGEVINRKNFKGVSIQ 171
>gi|308233977|ref|ZP_07664714.1| DNA repair protein RecO [Atopobium vaginae DSM 15829]
gi|328944014|ref|ZP_08241479.1| hypothetical protein HMPREF0091_10704 [Atopobium vaginae DSM 15829]
gi|327491983|gb|EGF23757.1| hypothetical protein HMPREF0091_10704 [Atopobium vaginae DSM 15829]
Length = 258
Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 6/190 (3%)
Query: 3 WQDDAIIL-GVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ A+I+ EK+ IL ++ + + + ++
Sbjct: 15 IRKHALIIDHRTKLKEKDRILTLVCDDGTQRQAIAKGALKPGGRFAGVCEFAHEADFLLA 74
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRF-LPEREPCLELYDMLNIFLNC 120
+L + V L + L R+ P ++++ + L+
Sbjct: 75 EGTSLDIVQEAVSICPHKTLRELPDAFAAACVVCELARYTTFPDLPNPFMFNICSCALSL 134
Query: 121 HKIPSVIGKIFVQIELMLLKNI---GFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
+ + + + K + G+ L+ C+ G D+ + S SGG++C S
Sbjct: 135 CETINSYTVLLALVVAYTFKVLAHEGYRPILSSCIYCGEA-DIAYFSATSGGSICTSCAH 193
Query: 178 PYAEKMLVLP 187
+ P
Sbjct: 194 DIDGLSEITP 203
>gi|326576292|gb|EGE26207.1| DNA repair protein RecO [Moraxella catarrhalis CO72]
Length = 269
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/256 (10%), Positives = 56/256 (21%), Gaps = 34/256 (13%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-----------SHRMQPILQAGNLVR 55
+L R Y EK I + + + G G G+ S + + G +
Sbjct: 8 GYLLHQRPYQEKRAIYQFFSYEKGVVHGI--GGRGMPLFTPIWLMSSGTKSLKSFGQISL 65
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ Q + L++ + L L + L PC +L+ + +
Sbjct: 66 GFSDEFVRQLTAQSNEAAYHPASYGLMTGRVQYALLYMNEILDKLLATESPCPKLWQVYH 125
Query: 116 IFLNCH-----------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV- 163
+ + E L +G +D
Sbjct: 126 TNMTKLHALDRLSLMAVDKMQAMKLYLRSFERGLFSELGVMMDFCVDGHGVPINADAMYC 185
Query: 164 -------SPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
+ + L + + K
Sbjct: 186 FIPQMGFMLAHLVRTQTDPKIRFDGICYTGSQILQMGAAMEEPELALEFLDQFSQI-QKA 244
Query: 217 ALQHNIIHCH-LLREN 231
L + + H R
Sbjct: 245 VLDNLLNHQPLHSRTL 260
>gi|87125607|ref|ZP_01081452.1| Recombination protein O (RecO) [Synechococcus sp. RS9917]
gi|86166907|gb|EAQ68169.1| Recombination protein O (RecO) [Synechococcus sp. RS9917]
Length = 261
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 10/159 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+A+ L GE + +L V++ + G V + R L+ + +
Sbjct: 8 EALALKAGPLGEHDRLLTVLSAETGVIRLAVPGARRPRSSLAAAVPLTLLELQVVGQRGL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ V S A + +P L D + + L +
Sbjct: 68 PR-LRQLRVQHSFIAVGQRLDTLAGAQALAELCIALVAGDDPIPGLLDTVLMHLERLETC 126
Query: 125 SVI--------GKIFVQIELMLLKNIGFGLDLTKCVVTG 155
S VQ + LL G+GL L C +G
Sbjct: 127 SRTSAPEPGLALATTVQAAVHLLALGGYGLPLQSCCRSG 165
>gi|189219762|ref|YP_001940403.1| Recombinational DNA repair protein RecO [Methylacidiphilum
infernorum V4]
gi|189186620|gb|ACD83805.1| Recombinational DNA repair protein RecO [Methylacidiphilum
infernorum V4]
Length = 184
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 4/143 (2%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQA---GNLVRVNWRS 60
AI + E + I+ ++ G + + V + S
Sbjct: 10 STTAIAFRKYPFSETSTIIYWISP-MGCIKTLAKGSRKSGTASFAPIDLFYECEIVFYVS 68
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
R + + +++ A L + + + ER P E + +L L
Sbjct: 69 RRSDLYLLKEYRIVDPMLALRRDWVTLLCSSYFVELIAQTAEERTPLPECFILLEKALGY 128
Query: 121 HKIPSVIGKIFVQIELMLLKNIG 143
K V KI E LL G
Sbjct: 129 IKKKPVSLKIVELYEKRLLAIHG 151
>gi|296113912|ref|YP_003627850.1| DNA replication and repair protein RecO [Moraxella catarrhalis RH4]
gi|295921606|gb|ADG61957.1| DNA replication and repair protein RecO [Moraxella catarrhalis RH4]
gi|326560589|gb|EGE10970.1| DNA repair protein RecO [Moraxella catarrhalis 103P14B1]
gi|326561462|gb|EGE11812.1| DNA repair protein RecO [Moraxella catarrhalis 46P47B1]
gi|326562234|gb|EGE12562.1| DNA repair protein RecO [Moraxella catarrhalis 7169]
gi|326565584|gb|EGE15747.1| DNA repair protein RecO [Moraxella catarrhalis 12P80B1]
gi|326567188|gb|EGE17310.1| DNA repair protein RecO [Moraxella catarrhalis BC1]
gi|326568470|gb|EGE18550.1| DNA repair protein RecO [Moraxella catarrhalis BC7]
gi|326572023|gb|EGE22025.1| DNA repair protein RecO [Moraxella catarrhalis BC8]
gi|326573970|gb|EGE23920.1| DNA repair protein RecO [Moraxella catarrhalis O35E]
gi|326574962|gb|EGE24892.1| DNA repair protein RecO [Moraxella catarrhalis 101P30B1]
Length = 269
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/256 (10%), Positives = 56/256 (21%), Gaps = 34/256 (13%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-----------SHRMQPILQAGNLVR 55
+L R Y EK I + + + G G G+ S + + G +
Sbjct: 8 GYLLHQRPYQEKRAIYQFFSYEKGVVHGI--GGRGMPLFTPIWLMSSGTKSLKSFGQISL 65
Query: 56 VNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLN 115
+ Q + L++ + L L + L PC +L+ + +
Sbjct: 66 GFSDEFVRQLTAQSNEAAYHPASYGLMTGRVQYALLYMNEILDKLLATESPCPKLWQVYH 125
Query: 116 IFLNCH-----------KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV- 163
+ + E L +G +D
Sbjct: 126 TNMTKLHALDRLSLMAVDKMQAMKLYLRSFERGLFSELGVMMDFCVDGHGVPINADAMYC 185
Query: 164 -------SPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
+ + L + + K
Sbjct: 186 FIPQMGFMLAHLVRTQIDPKIRFDGVCYTGSQILQMGAAMEEPELALEFLDQFSQI-QKA 244
Query: 217 ALQHNIIHCH-LLREN 231
L + + H R
Sbjct: 245 VLDNLLNHQPLHSRTL 260
>gi|116075036|ref|ZP_01472296.1| Recombination protein O (RecO) [Synechococcus sp. RS9916]
gi|116067233|gb|EAU72987.1| Recombination protein O (RecO) [Synechococcus sp. RS9916]
Length = 268
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + L V GE + +L +++ Q G V + + + + R
Sbjct: 7 EGLALKVGPLGEHDRLLTLLSDQVGVIRLAVPGARKPKSSLAGAVPLTQLELQVVGRRGL 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ V + A + + +P L D + I L +
Sbjct: 67 PR-VRQLRVQHNFGAVGQRLETLAGAQALAELCMGLVEDDDPLNGLLDAVVIHLERLEAI 125
Query: 125 SVIGKIFVQIE-------LMLLKNIGFGLDLTKCVVTG 155
S + LL G+GL L C +G
Sbjct: 126 SRGPDDGSLALASSVQACVHLLAIGGYGLPLQSCCRSG 163
>gi|281356997|ref|ZP_06243487.1| hypothetical protein Vvad_PD1515 [Victivallis vadensis ATCC
BAA-548]
gi|281316555|gb|EFB00579.1| hypothetical protein Vvad_PD1515 [Victivallis vadensis ATCC
BAA-548]
Length = 204
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 3/140 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW-RSRLAQ 64
I+L + Y E ++L ++ YGR Q S + P + V + S +
Sbjct: 7 IVLSKQPYKENALLLGGLSPDYGRVSLVANGAQKLSAKDFPAADLFRELEVEFDDSGNSD 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ E++ + L F + L + P YD L L +
Sbjct: 67 LHTAKKLELIFNFDRIALKPQHFKLAGRIGGFLLKNAVPGVPQPFTYDALRSILTQLCLD 126
Query: 125 SVIGKIFVQIELMLLKNIGF 144
+ + + ++ I +
Sbjct: 127 DDVQGRWTMEQCSVVLKITY 146
>gi|78184233|ref|YP_376668.1| recombination protein O, RecO [Synechococcus sp. CC9902]
gi|78168527|gb|ABB25624.1| DNA replication and repair protein RecO [Synechococcus sp. CC9902]
Length = 257
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 5/154 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ + L V GE + +L +++ G V + + A + +
Sbjct: 7 EGLALKVGPLGEHDRLLSLLSDAEGLTRFAVPGARRPKSSLAAAAPLTLLELQVGGRSGL 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ VL S Q++ L L +P L + + L + +
Sbjct: 67 GRVRQLRVLRSFSRLGQRLETL-SAAQALCDLCLQLAADDPVNGLLSTVLLHLERLESHA 125
Query: 126 VIGKI----FVQIELMLLKNIGFGLDLTKCVVTG 155
+ VQ + LL G+GL + C ++G
Sbjct: 126 DDADLVLAGTVQASIHLLTLGGYGLPMQSCCLSG 159
>gi|254431445|ref|ZP_05045148.1| DNA repair protein RecO [Cyanobium sp. PCC 7001]
gi|197625898|gb|EDY38457.1| DNA repair protein RecO [Cyanobium sp. PCC 7001]
Length = 264
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 9/162 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + L R GE + +L +++ + G V + R +R+ R
Sbjct: 7 EGLALSCRPLGESDRLLTLLSEEDGLTRLAVPGARKPRSSLAAAVPLAHLRLQVGGRSGL 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
V + +P P + + + L +
Sbjct: 67 RRVRQLRVVRN-YSQLAERLETLAAAQALAELCLGLVPGDAPAPGMLGSMLMQLGRLEQQ 125
Query: 125 SVIGKIFVQIE-------LMLLKNIGFGLDLTKCVVTGVTQD 159
++ + LL G+ L L +C TG D
Sbjct: 126 VRERSDSLEALALAVQGSVHLLALGGYALPLVQCSRTGQRLD 167
>gi|296327609|ref|ZP_06870153.1| recombination protein O [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155255|gb|EFG96028.1| recombination protein O [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 48
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 1 MYW-QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ 45
M + + II+ + E + + + YG+ ++ + + +
Sbjct: 1 MIFLRGKGIIIAKKDIEEADRYITIFMEDYGKVSTVIKGIRKSKKR 46
>gi|33860955|ref|NP_892516.1| putative recombination protein O [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639687|emb|CAE18857.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 259
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + GE ++ V+T + G + + + + +
Sbjct: 8 KGLCIKASPLGESGRLITVLTDEQGIIRLAAPGARRPKSSLAAATPLTYLSFQIFGKRSL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH--- 121
+ ++L+S+ + F + + + + I L+
Sbjct: 68 KS-VRQIKILKSYNGLGKNIECLAAAQAITELTFLLVGNNDKQKDYLSSVLIHLDRIYEY 126
Query: 122 ----KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
+ + + +Q + LL G + + C TG
Sbjct: 127 NLESEEDFKMLSMSIQSLIHLLAIGGINIPVNFCCKTG 164
>gi|146328642|ref|YP_001210012.1| hypothetical protein DNO_1128 [Dichelobacter nodosus VCS1703A]
gi|146232112|gb|ABQ13090.1| hypothetical protein DNO_1128 [Dichelobacter nodosus VCS1703A]
Length = 229
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 7/144 (4%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
A IL Y + +L++ + G + + + ++ L
Sbjct: 12 AFILKRTPYQDNKYLLDLFCQNLGLIRAVGSVSRYKNYRDTQSFAPFQEIVINGKIKNEL 71
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
L H A L + F LY+ L
Sbjct: 72 ATIWNSELRHHYA--PKGKNILAAHYLNELMLYFSHSISRPQTLYEHYKTQLIHL----- 124
Query: 127 IGKIFVQIELMLLKNIGFGLDLTK 150
+ Q+E ++ +G ++ +
Sbjct: 125 RAENLRQLEWYFIEELGLFPEIKQ 148
>gi|291279474|ref|YP_003496309.1| hypothetical protein DEFDS_1084 [Deferribacter desulfuricans SSM1]
gi|290754176|dbj|BAI80553.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 227
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 14/205 (6%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
+ +AII + +Y +K+ I V ++ YG F+ + S + + + + +
Sbjct: 3 RVKTEAIIYKLINYADKSAIGYVFSKDYGLIKVFISSAFSKK--GGVFKFLPGIMELKYK 60
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
L ++ L + L L + L L +
Sbjct: 61 ENGLLHKYYGFEQNVSYNYFLDNPYILMRLNLLFFLIDEYGIENNE------YVWKLILN 114
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
I K FV I +LK G ++ +C+ G +L S + G +
Sbjct: 115 IREENIYKSFVYITYYILKGSGVFPEI-QCLECGAKSNLYLCSDLAVR-----CGKCTDD 168
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAF 206
K + + L+K ++ F
Sbjct: 169 KKYYITNELFKIFSKLNNKEKYKIF 193
>gi|116071122|ref|ZP_01468391.1| Recombination protein O, RecO [Synechococcus sp. BL107]
gi|116066527|gb|EAU72284.1| Recombination protein O, RecO [Synechococcus sp. BL107]
Length = 257
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 5/154 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ + L V GE + +L +++ G V + + A + +
Sbjct: 7 EGLALKVGPLGEHDRLLSLLSDAEGLTRFAVPGARRPKSSLAAAAPLTLLELQVGGRSGL 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ VL S Q++ L L +P L + + L + +
Sbjct: 67 GRVRQLRVLRSFSRLGQRLETL-SAAQALCDLCLQLAADDPVNGLLSTVLLHLERLESHA 125
Query: 126 VIGKI----FVQIELMLLKNIGFGLDLTKCVVTG 155
+ VQ + LL G+GL + C ++G
Sbjct: 126 DDADLVLAGTVQASIHLLTLGGYGLPMQTCCLSG 159
>gi|330444171|ref|YP_004377157.1| DNA repair protein RecO [Chlamydophila pecorum E58]
gi|328807281|gb|AEB41454.1| DNA repair protein RecO [Chlamydophila pecorum E58]
Length = 246
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 5/179 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M I+L +G+ ++++ + + G F + G S + LQ
Sbjct: 1 MRTFTSGIVLQNTPFGKNHLLVTLFSPG-GLLKFFAKQGLSLNCTYRDALQPLVFGNYTL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
R A+ EV S SL G + I + +P EL+ +L FL
Sbjct: 60 RGSSAKTRTLIEGEVRYDFPELKQSYSLLHAGGKMIQAVLSSQWNEKPSPELFSLLFNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLT-KCVVTGVTQDLLWVSPKSGGAVCRSVG 176
L LL+ G LDL+ C + G +C+
Sbjct: 120 YRLHKSQNPDFFAAIFLLKLLQYEGI-LDLSPSCSLCNTPLIDTTCYRYQGQKLCKKHA 177
>gi|229827514|ref|ZP_04453583.1| hypothetical protein GCWU000182_02903 [Abiotrophia defectiva ATCC
49176]
gi|229788452|gb|EEP24566.1| hypothetical protein GCWU000182_02903 [Abiotrophia defectiva ATCC
49176]
Length = 207
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 5/193 (2%)
Query: 14 SYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEV 73
GE + + ++T + GR F R + + + L ++ +N
Sbjct: 2 PIGEYDKRVVIITAELGRIHAFARGARRTNSKLLAGTDPLTFGTFKLISGKNAYTLVEVK 61
Query: 74 LESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV---IGK 129
+ ++ +L YG + F E L +++ + +
Sbjct: 62 IVNYFNELKTDIDRVYYGFYFLELASYFSRENIGEKNLINLIYMAFKALEAKVDKLTPEF 121
Query: 130 IFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG-LPYAEKMLVLPS 188
I E + + G + + + G V AV + +
Sbjct: 122 IKAIFEWKIFQIEGIMPSIDEGIFLGKKLKPSTVYAIKMIAVTDITKLFSFDLEAESKRE 181
Query: 189 FLWKEEQTIDADS 201
F+ E+ D ++
Sbjct: 182 FIKLAEEYRDLNT 194
>gi|78213532|ref|YP_382311.1| DNA replication and repair protein RecO [Synechococcus sp. CC9605]
gi|123577709|sp|Q3AI26|RECO_SYNSC RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|78197991|gb|ABB35756.1| DNA repair protein RecO [Synechococcus sp. CC9605]
Length = 257
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 5/155 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ L V GE + +L +++ G V + R A + +
Sbjct: 7 TGLALKVGPLGEHDRLLSLLSNAEGVSRFAVPGARRPRSSLAAAAPLTLLELQVGGRSGL 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ VL S Q++ L L +P L D + + L +
Sbjct: 67 ARVRQLRVLRSFSGLGQQLETL-AAAQALCDLCIQLAAEDPVEGLLDTMQLHLERLEEHR 125
Query: 126 VIGKI----FVQIELMLLKNIGFGLDLTKCVVTGV 156
++ VQ + LL G+GL L C +TG
Sbjct: 126 ADPELVLAGTVQACIHLLTLGGYGLPLQTCCITGD 160
>gi|71894681|ref|YP_278789.1| hypothetical protein MS53_0671 [Mycoplasma synoviae 53]
gi|71851469|gb|AAZ44078.1| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 226
Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 9/219 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M I+L ++ + E I+ + + G F + + + L G +V + +
Sbjct: 1 MSDFTTGIVLKIKKHSENEFIVYFLCAK-GVLKLFAMGLEKPTSKNKTNLVIGAIVEIEY 59
Query: 59 R-SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIF 117
+RL +G + S + Q ++ LF + L +Y +
Sbjct: 60 FKARLKNKIGRLKTVKTLLFPVYNFKSLEEYFEFQKLIKLFLTINFENNFLSVYKFMLEK 119
Query: 118 LNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
L LL N G + C + +L+ + + GG C
Sbjct: 120 LKYIN----YEYAMTYFYGQLLINYGVCPNFKSCAICMQESNLVSFNLEEGGFFCNKHSD 175
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
+ + + ++ ++ + + FL
Sbjct: 176 GIEILNVEVLNLIYLSYNNF-ILYVQKTNKYVNDFLQNK 213
>gi|269115111|ref|YP_003302874.1| hypothetical protein MHO_3360 [Mycoplasma hominis]
gi|268322736|emb|CAX37471.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
Length = 223
Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 4/175 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
M ++ I++ ++ E + I+ ++T G F + L VN
Sbjct: 1 MEFELSGIVINKQNVNEFDEIISLLT-NKGIQRIFCPGVNKTNSKNGPSILILNLVNCEV 59
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
++ S + L + F L + L L+
Sbjct: 60 IKSETRNLLPRLKTASLIKNFPTDYRLLNIANDLKTFFNCLD-NCNNINLIKEYEHCLDF 118
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
S K+ + +++ ++GF +L C+ ++++ GG +C
Sbjct: 119 ILSKSD--KVEAYLLFLVVSSLGFKPNLNSCIECNNVENIVDFKLYKGGFLCSMH 171
>gi|33865199|ref|NP_896758.1| recombination protein O (RecO) [Synechococcus sp. WH 8102]
gi|81572940|sp|Q7TTW6|RECO_SYNPX RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|33638883|emb|CAE07180.1| possible Recombination protein O (RecO) [Synechococcus sp. WH 8102]
Length = 268
Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 5/153 (3%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
+ L V GE + +L +++ G V + + A + +
Sbjct: 8 GLALKVGPLGEHDRLLSLLSDAEGVTRLAVPGARRPKSSLAAAAPLTLLELQVGGRSGLA 67
Query: 67 GEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ VL SH Q+ L + +P L L + L S
Sbjct: 68 RVRQLRVLHSHAGLGRQLETL-SAAQAFCDLCLQIGREDPVEGLLATLQLHLERLDQRSD 126
Query: 127 IGKIFVQI----ELMLLKNIGFGLDLTKCVVTG 155
+ + LL G+ L L C ++G
Sbjct: 127 CLDELLASSVQGAIHLLTLGGYSLPLQSCCLSG 159
>gi|294101757|ref|YP_003553615.1| DNA repair protein RecO [Aminobacterium colombiense DSM 12261]
gi|293616737|gb|ADE56891.1| DNA repair protein RecO [Aminobacterium colombiense DSM 12261]
Length = 242
Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 1/155 (0%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
++ ++L R E +I L + + G R + L ++ +
Sbjct: 9 FRSSGVVLRRRISAEGDISLHLFLKGVGPVWVQAPGSARGRGRFGGATEPLTWGSFNLYK 68
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
++L +V + L L+ + R+ ++ +L +
Sbjct: 69 GPKHLYLKTIDVKDDMWTLRLDPEKLHSALEWNRMVSRYTCSGVAEDDVLILLYWTMRSL 128
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
+ + ++ L G DL+KC GV
Sbjct: 129 CEGANPLFLSWRLLWRWLYIRGEAPDLSKCEQCGV 163
>gi|225387779|ref|ZP_03757543.1| hypothetical protein CLOSTASPAR_01549 [Clostridium asparagiforme
DSM 15981]
gi|225046113|gb|EEG56359.1| hypothetical protein CLOSTASPAR_01549 [Clostridium asparagiforme
DSM 15981]
Length = 217
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 2/139 (1%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNL 66
++L GE + L ++T G+ F + + V + +
Sbjct: 9 GMVLLSAPSGEFDRRLVLLTTGRGKITAFAHGARRPGNPLMACTRTFVFGKFTLYEGRTA 68
Query: 67 GEFRFEVLESHCAKLLSSSL-FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + ++ +L S YG + + E E +L L P+
Sbjct: 69 YNLQSAQVANYFDELSSDMEGACYGSYFLELADFYSQENMDATEQLKLLYQSLRALLKPA 128
Query: 126 VIGKI-FVQIELMLLKNIG 143
+ ++ EL ++ G
Sbjct: 129 IPNRLVRRIFELKMMVING 147
>gi|88809275|ref|ZP_01124784.1| Recombination protein O (RecO) [Synechococcus sp. WH 7805]
gi|88787217|gb|EAR18375.1| Recombination protein O (RecO) [Synechococcus sp. WH 7805]
Length = 270
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 10/161 (6%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ L V GE + +L +++ G V + R + + R
Sbjct: 8 QGLALKVGPLGEHDRLLTLLSDDVGVIRLAVPGARRPRSSLAAAVPLTCLDLQVVGRRGL 67
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI- 123
+ +V S+ + +P L D + I L
Sbjct: 68 AR-VRQLQVQRSYSGLGQRLDTLAAAQALAELAIALVSSDDPVPGLLDAVLIHLERLDNL 126
Query: 124 -------PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
VQ + LL G+GL L C +G T
Sbjct: 127 SRAPGEKVDHCLAHVVQAGVHLLALGGYGLPLQACCRSGAT 167
>gi|87301170|ref|ZP_01084011.1| Recombination protein O (RecO) [Synechococcus sp. WH 5701]
gi|87284138|gb|EAQ76091.1| Recombination protein O (RecO) [Synechococcus sp. WH 5701]
Length = 275
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 9/158 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ + L GE + +L +++ G V + R + +R+
Sbjct: 7 EGLSLKCGPLGEHDRLLTLLSEDGGLSRLAVPGARRPRSSLAAAVPLSQLRLQVGG-GRG 65
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ V+ S R +P+ + L + L ++
Sbjct: 66 LRRVRQLRVIHSFGQLGQRLETLAAAQSLAELCLRLVPDGDGVAGALGDLTLQLRRLELV 125
Query: 125 SVIGKIFVQI-------ELMLLKNIGFGLDLTKCVVTG 155
+ ++ + LL G+GL L +C +G
Sbjct: 126 VSERQDNLEALAIAVQGHVHLLALGGYGLPLQRCARSG 163
>gi|260435082|ref|ZP_05789052.1| DNA repair protein RecO [Synechococcus sp. WH 8109]
gi|260412956|gb|EEX06252.1| DNA repair protein RecO [Synechococcus sp. WH 8109]
Length = 257
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 3/150 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ L V GE + +L +++ G V + + A + +
Sbjct: 7 TGLALKVGPLGEHDRLLSLLSDAEGVSRFAVPGARRPKSSLAAAAPLTLLELQVGGRSGL 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ VL S + + L M + +
Sbjct: 67 ARVRQLRVLRSFSGLGQQLETLAAAQALCDLCLQLAAQDPVDGLLDTMQLHLERLEEHRA 126
Query: 126 VIGKIFVQIELMLLKNI---GFGLDLTKCV 152
+ + + G+GL L C
Sbjct: 127 DPELVLAGTVQACIHLLTLGGYGLPLQTCC 156
>gi|332296317|ref|YP_004438240.1| hypothetical protein Thena_1497 [Thermodesulfobium narugense DSM
14796]
gi|332179420|gb|AEE15109.1| hypothetical protein Thena_1497 [Thermodesulfobium narugense DSM
14796]
Length = 178
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 3/134 (2%)
Query: 8 IILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
I L E + I++++T G +R + + ++ ++ G L+ V + +
Sbjct: 6 IFLKSYPIKENSFIVKILTDSEGSLPALLRGSKKNILRKLIFPGTLMDVELVKTKGEIMI 65
Query: 68 EFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPER---EPCLELYDMLNIFLNCHKIP 124
+ ++ S S+ L I+ ++
Sbjct: 66 LNEYRIIRSPNISSFRQSILLSSYLDIIDKIARGHFESVQRVYTNIFFEDETQFKDLDWF 125
Query: 125 SVIGKIFVQIELML 138
K +
Sbjct: 126 IRCLKEEFYYAGFM 139
>gi|240047737|ref|YP_002961125.1| hypothetical protein MCJ_006270 [Mycoplasma conjunctivae HRC/581]
gi|239985309|emb|CAT05322.1| HYPOTHETICAL PROTEIN MCJ_006270 [Mycoplasma conjunctivae]
Length = 224
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 5/173 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
I++ + Y E + I+++ T + + + + L+
Sbjct: 7 KGIVIYSQDYKENDQIIKIATPEK-IISFIAVGVRKPNSKNRSSLVLATYGEYEIFLS-- 63
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ Y + + + E++ L N +
Sbjct: 64 YHVNKLSKLKKGYFIKNLDFQKEYVIIFWNLISKIWKT-SYHGEIFSFLVEAYNIIDNEN 122
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + L G +L C Q L G
Sbjct: 123 YLAIYIYLLLKW-LGLEGLVANLNSCFYCNNNQRLSHFEFDKGMQCILHENRK 174
>gi|255994491|ref|ZP_05427626.1| DNA repair protein RecO [Eubacterium saphenum ATCC 49989]
gi|255993204|gb|EEU03293.1| DNA repair protein RecO [Eubacterium saphenum ATCC 49989]
Length = 256
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 7/210 (3%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
++ +AI+L ++ ++TR + L S + + + ++ +
Sbjct: 3 EFEIEAIVLRCIKMTGGRNLVTLLTRDDKKILASAYGSGSSKGGDANILQPMSKSIFQIK 62
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ + ++++ + +I + +PE Y+ L+ FL+
Sbjct: 63 QNRYYNVLKVDLIDYPMEIASDIEKLAVAMFAIEITDKVIPENSGEHGAYNHLSSFLDAA 122
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS-------GGAVCRS 174
+ IF + + + + V + + S KS A
Sbjct: 123 RRRESEYAIFPIYYFIKILTMTGVFVINNEVFLDAANESCYFSLKSGKTYETYKKAKTEI 182
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDADSLKS 204
G Y +L + S + + + +
Sbjct: 183 GGGYYDSLILKVSSDIINTVRYLANADISK 212
>gi|42525952|ref|NP_971050.1| recombination protein O [Treponema denticola ATCC 35405]
gi|41816002|gb|AAS10931.1| Recombination protein O [Treponema denticola ATCC 35405]
Length = 269
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 8/190 (4%)
Query: 3 WQDDAIILGVRSYGE---KNIILEVMTRQY-GRHLGFVRNGQSHRMQPILQAGNLVRVNW 58
W +A++L ++++GE ++L T V G +++ ++ + V
Sbjct: 6 WSSEALVLSLKTFGEGHRNALLLLPYTEHSCQLVDAAVFGGPKSKLRSMVIPYHTGEVWI 65
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
S +N + + + L + ++ L L +
Sbjct: 66 YSNPIKNSNKISDFKVSDYRIGLSDNLTRIWCAAFAAELAVKLKGNI--DWQIINSFLTG 123
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ K ++ ++ G D+ C G+ + P++
Sbjct: 124 IAVSSENECRKALLRFLWRVISLSGLAPDMEHCCRCGIR--VSSKMPETDYLNKSVSAFS 181
Query: 179 YAEKMLVLPS 188
YAEK
Sbjct: 182 YAEKNFFFVP 191
>gi|218295529|ref|ZP_03496342.1| DNA repair protein RecO [Thermus aquaticus Y51MC23]
gi|218244161|gb|EED10687.1| DNA repair protein RecO [Thermus aquaticus Y51MC23]
Length = 221
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 4/145 (2%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLA 63
++ I++G + + ++++ +T + G R GQ + L + VR ++
Sbjct: 7 EEGIVVGRKPLAQGDLLVRFLTPK-GSLEAVARKGQRPTGRTGRLSLFHHVRFQLYAKEE 65
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E++ L + L L E +Y + L
Sbjct: 66 GLPTLTQAELIGRLHG--LEEPRRFLLASFLAELAYRLASPEAAPRIYPVFVSGLRGIAK 123
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDL 148
V LK G +L
Sbjct: 124 HKEPLLPLVWAGWRALKAGGLSPNL 148
>gi|229824095|ref|ZP_04450164.1| hypothetical protein GCWU000282_01399 [Catonella morbi ATCC 51271]
gi|229786449|gb|EEP22563.1| hypothetical protein GCWU000282_01399 [Catonella morbi ATCC 51271]
Length = 200
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 33/115 (28%)
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ ++ A L YG+ + + L + + ++Y +L L
Sbjct: 13 EGLSFLKESQPIQLFQALQQDMLLQAYGIYVLQLVDAALEDNQANPKVYQLLLQVLEALN 72
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGL 177
I +E+ LL G + C L S K +C
Sbjct: 73 QGLTAQVIVAYLEIHLLPIFGIHIQWASCATCQTNDRPLRFSLKRQAVLCDRHAF 127
>gi|296125227|ref|YP_003632479.1| DNA repair protein RecO [Brachyspira murdochii DSM 12563]
gi|296017043|gb|ADG70280.1| DNA repair protein RecO [Brachyspira murdochii DSM 12563]
Length = 262
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 65/252 (25%), Gaps = 29/252 (11%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ--SHRMQPILQAGNLVRVNW 58
M A IL Y +II +T + S L++ + + +N
Sbjct: 1 MIKNTQAFILSYNQYKTSSIIASFLTNNS-IIQAICYKAKKSSKSFGSDLESISKLNINI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ L + + + + L S + I + + M
Sbjct: 60 YEKKQPQLSILKESSITKNYSSLEKSIYSSLLVFYIREVLLYCARDFDERYFILMEKSLN 119
Query: 119 NCHKI-------------PSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP 165
++ I + E+ L G L +C++ + + S
Sbjct: 120 ALEELEEAESLKDDDKIKKMYINILMRAFEMKTLHIAGISPHLDRCILCE-NNNASFYSI 178
Query: 166 KSGGAVCRSVGLPYAEKMLVLPS--FLWKEEQTIDADSLKSAFQL----------TDYFL 213
GG +C + + + + + ++ + +
Sbjct: 179 TEGGLICSKCKAIIKDAFEITEDDKNFMRIIKHTSLIDIVNSKNIINLYNNSIGNVRDIM 238
Query: 214 NKYALQHNIIHC 225
NK H +
Sbjct: 239 NKSLFYHINRNI 250
>gi|229495820|ref|ZP_04389548.1| DNA repair protein RecO [Porphyromonas endodontalis ATCC 35406]
gi|229317394|gb|EEN83299.1| DNA repair protein RecO [Porphyromonas endodontalis ATCC 35406]
Length = 248
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV--------RNGQSHRMQPILQAGN 52
M AI+L R+Y +K I ++T + G + R+ + R+Q ++ +
Sbjct: 1 MLISTRAIVLTTRAYNDKFAIAHLLTEEEGMVAYKIPKPSPSNRRSSATARLQRMVHPLS 60
Query: 53 LVRVNWRSRLAQNLGEFR--FEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL 110
+ + RL + L + S L L+ L P E+
Sbjct: 61 ELSIVADHRLQRGLQQIDDAEYYRLSLNLMLYDQIKVNIAYFLAEALYHILRSAPPDPEV 120
Query: 111 YDMLNIFLNCHKIPSV-IGKIFVQIELMLLKNIGFGL 146
Y ++ + + + LL+ +G
Sbjct: 121 YRYISRSIETLEESEKSCANFPITFLFGLLEPLGVLP 157
>gi|320536666|ref|ZP_08036681.1| DNA repair protein RecO [Treponema phagedenis F0421]
gi|320146488|gb|EFW38089.1| DNA repair protein RecO [Treponema phagedenis F0421]
Length = 253
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 53/196 (27%), Gaps = 7/196 (3%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGF---VRNGQSHRMQPILQAGNLVRVNWRS 60
+A++L + +GE + ++ + ++ + G + + + V S
Sbjct: 7 TAEALVLSLGEFGEGHRMVRLFIKEDTTCSLLHAALYGGAKSKARSSIAPYQTGTVWLYS 66
Query: 61 RLAQNLGEFRFEVLESH-CAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+N + S+ + S + + L + +
Sbjct: 67 NPIKNTHSITDFAITSYRFSIRESLVRLWSAA--LCAELIDATKGNISWVLVNAFLDGIE 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
+ + +LL G ++ C + L + + L
Sbjct: 125 NLPDNECKVALIRFLWRVLLGE-GIAPEIDCCAACRKSFTDLLANEYFYYHTHEELCLCS 183
Query: 180 AEKMLVLPSFLWKEEQ 195
+ + F +E
Sbjct: 184 SCSDISQSGFQLSKEA 199
>gi|162447801|ref|YP_001620933.1| DNA repair protein [Acholeplasma laidlawii PG-8A]
gi|161985908|gb|ABX81557.1| DNA repair protein [Acholeplasma laidlawii PG-8A]
Length = 215
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 10/203 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ I+ +SY E + +L V T+ GR + Q A L + ++ +N
Sbjct: 2 EGIVYKQQSYLENDRLLFVYTK-LGRITLVAKGSQKMTSNIRNVAQYLNLIYFKEVPNKN 60
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ + + S + + L F+ + + +Y +L L + S
Sbjct: 61 MYALVEGKTLNDFQNIKSDFDLMTQASILFDLLGFVSDNDDHESIYTLLEGALLHYSKES 120
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
++ LL+ +G+ + L ++ S + + +LV
Sbjct: 121 ILSFG-----FKLLRYLGYQISLKPDGRRVKGVNIKTASIVYEKEPYVANIDVHQTTLLV 175
Query: 186 LPSFL----WKEEQTIDADSLKS 204
++L I+ LK
Sbjct: 176 RLTYLDYDKIDTIDEINYRELKE 198
>gi|269303466|gb|ACZ33566.1| DNA repair protein RecO [Chlamydophila pneumoniae LPCoLN]
Length = 252
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 3/206 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M ++L R G+ + + + T + G F + GQ+ + + L +L +
Sbjct: 1 MQICVTGVVLRSRPLGKNHTLTTLFTPE-GLFTFFAKQGQTLQCDYRETLVPISLGKYTL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
++ ++L + A + +L + I L + +P +L+ + FL
Sbjct: 60 HRNGSRLPKLTHGDILNAFEAIKQTYALLEASGKMIQALLASQWKEKPSHKLFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ + L LL+ G C + + + +
Sbjct: 120 HRIPESNNPEFFAAIFVLKLLQYEGILDLTPACSLCKASLPYACYRYQGHKLCKKHQHKQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKS 204
L L +
Sbjct: 180 AISIEKEEEQILQAIIHAKQFSELLA 205
>gi|167950039|ref|ZP_02537113.1| DNA repair protein RecO [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 137
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 25/72 (34%)
Query: 86 LFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFG 145
G L R L +P +L+ + L + + EL LL +G+G
Sbjct: 1 HLYCGFYLNELLTRLLQREDPHPQLFLHYSNTLAALATAEPMEAVLRHFELELLDELGYG 60
Query: 146 LDLTKCVVTGVT 157
L L + G
Sbjct: 61 LLLDQEADNGDK 72
>gi|227874498|ref|ZP_03992670.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227839642|gb|EEJ50100.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 216
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
++L S E + L+++T + G+ + + + + + V + R +
Sbjct: 8 HGVVLSEHSLREFDKRLQLLTMERGKMTVWASGAKRPNSPLLAGSRSFVFGKFHLREGKA 67
Query: 66 LGEFRFEVLESHCAKL-LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
R ++++ ++ Y + E ++ ++L + L
Sbjct: 68 GYTLRSVEVDAYFEEIAKDLEKACYAAYFLELAELVAQENLEAPQMVELLYLSLKALLHK 127
Query: 125 S-VIGKIFVQIELMLLKNIG 143
+ EL +L G
Sbjct: 128 GLKNELVRRIFELRMLMLEG 147
>gi|15618499|ref|NP_224785.1| DNA repair protein RecO [Chlamydophila pneumoniae CWL029]
gi|15836121|ref|NP_300645.1| DNA repair protein RecO [Chlamydophila pneumoniae J138]
gi|16752449|ref|NP_444711.1| DNA repair protein RecO [Chlamydophila pneumoniae AR39]
gi|33241944|ref|NP_876885.1| DNA repair protein RecO [Chlamydophila pneumoniae TW-183]
gi|20139865|sp|Q9Z7W5|RECO_CHLPN RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|4376883|gb|AAD18728.1| CT470 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189094|gb|AAF38039.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8978961|dbj|BAA98796.1| CT470 hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236454|gb|AAP98542.1| hypothetical protein CpB0613 [Chlamydophila pneumoniae TW-183]
Length = 252
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 3/206 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M ++L R G+ + + + T + G F + GQ+ + + L +L +
Sbjct: 1 MQICVTGVVLRSRPLGKNHTLTTLFTPE-GLFTFFAKQGQTLQCDYRETLVPISLGKYTL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
++ ++L + A + +L + I L + +P +L+ + FL
Sbjct: 60 HRNGSRLPKLTHGDILNAFEAIKQTYALLEASGKMIQALLASQWKEKPSHKLFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ S L LL+ G C + + + +
Sbjct: 120 HRIPESSNPEFFAAIFVLKLLQYEGILDLTPACSLCKASLPYACYRYQGHKLCKKHQHKQ 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKS 204
L L +
Sbjct: 180 AISIEKEEEQILQAIIHAKQFSELLA 205
>gi|315022236|gb|EFT35264.1| DNA recombination and repair protein RecO [Riemerella anatipestifer
RA-YM]
gi|325336636|gb|ADZ12910.1| RecO [Riemerella anatipestifer RA-GD]
Length = 225
Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 7/201 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG--QSHRMQPILQAGNLVRVNWRS-RL 62
IL Y + +L V+ R+ G FV+N ++ + L V N +
Sbjct: 5 QGFILSYTKYNDSGAVLRVLEREAGIQSYFVKNIYLARNKQKVYLMPLMGVDFNVSKTKS 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + E + + + +P LY + F +
Sbjct: 65 GALPLVNQISLSEISKMIDFTLVNNAQMTLLAEFILKTVPYEVVEDSLYQCVEDFYINME 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEK 182
+ ++KNIG+G T+ + + +
Sbjct: 125 NK----NSLIFSIYSIIKNIGYGFLFTEGAFFDLKNGCFQEIENEFTVNRTLSDILKNIE 180
Query: 183 MLVLPSFLWKEEQTIDADSLK 203
L + D +
Sbjct: 181 NLTFIKTPIDASERRDIIDIL 201
>gi|257456471|ref|ZP_05621667.1| recombination protein O [Treponema vincentii ATCC 35580]
gi|257446131|gb|EEV21178.1| recombination protein O [Treponema vincentii ATCC 35580]
Length = 283
Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMT-RQYG--RHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
W +A++L V S+ + + ++ +++G + G +++ ++ A +V
Sbjct: 6 WNTEALVLSVSSFNSDHRNVSLLVPQEHGCTIVPATLFGGARSKLRGMVAAYQSGKVWLY 65
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
S +N + + ++ +L S + ++ +L + L
Sbjct: 66 SNPIKNSNKITDFSVSAYRMELRESLARSWCA-AVCSEITIKTCGTVNWQLVNAFLDGL- 123
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
C + ++ LL+ G D+ C G
Sbjct: 124 CVSDDEGCERGLLRFLWRLLQTAGVAPDIFHCGFCG 159
>gi|213029338|ref|ZP_03343785.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 121
Score = 44.0 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 1/114 (0%)
Query: 102 PEREPCLELYDMLNIFLNCHKIPS-VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDL 160
EL+ + + + EL LL ++G+G++ T C +G D
Sbjct: 1 EYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD 60
Query: 161 LWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
+ + + + D D+L++A + T L
Sbjct: 61 TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALK 114
>gi|291060006|gb|ADD72741.1| DNA repair protein RecO [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 254
Score = 44.0 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 5/155 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTR---QYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
W A++L + ++GE + + + R + + G +++ ++ RV W
Sbjct: 6 WYAQALVLSLSAFGEGHKSVTLFVRLQDEAFILRAALFGGAQSKLRGLVIPYTTGRV-WV 64
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +H L S+ +I + L ++
Sbjct: 65 YSNPRTSMHKIVDFSVTHSRVALRDSIVRVWCAAICVDIIEASKGTISWTLVTAFLDGIS 124
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
+ + + +L+ G ++T C
Sbjct: 125 LSSDGACKHALLRFLWRVLIGE-GVAPNITSCSRC 158
>gi|15639623|ref|NP_219073.1| hypothetical protein TP0636 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025861|ref|YP_001933633.1| hypothetical protein TPASS_0636 [Treponema pallidum subsp. pallidum
SS14]
gi|3322934|gb|AAC65610.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018436|gb|ACD71054.1| hypothetical protein TPASS_0636 [Treponema pallidum subsp. pallidum
SS14]
Length = 256
Score = 44.0 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 5/155 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTR---QYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR 59
W A++L + ++GE + + + R + + G +++ ++ RV W
Sbjct: 8 WYAQALVLSLSAFGEGHKSVTLFVRLQDEAFILRAALFGGAQSKLRGLVIPYTTGRV-WV 66
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + +H L S+ +I + L ++
Sbjct: 67 YSNPRTSMHKIVDFSVTHSRVALRDSIVRVWCAAICVDIIEASKGTISWTLVTAFLDGIS 126
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVT 154
+ + + +L+ G ++T C
Sbjct: 127 LSSDGACKHALLRFLWRVLIGE-GVAPNITSCSRC 160
>gi|289523168|ref|ZP_06440022.1| DNA repair protein RecO [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503711|gb|EFD24875.1| DNA repair protein RecO [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 234
Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 1/152 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW-RSRLAQ 64
++L E +I L + R +G R + L+ ++ + +
Sbjct: 9 TGVVLKRHETSEGDIRLYNLFRDFGPQWILAPGAARGRRRFGGATEPLIWGHFSCYKSPK 68
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
L EV E H + + L ++L +PC E+ + L +
Sbjct: 69 QLYLRDIEVKEDHWNIRSNPDKLERAMIWANLLTKYLLPLQPCNEVMAVFYDSLCLLEGD 128
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
I + +K G +L +C G
Sbjct: 129 IDESMIEWRFLYRWMKKWGLAPELIRCASCGK 160
>gi|255348843|ref|ZP_05380850.1| DNA repair protein RecO [Chlamydia trachomatis 70]
gi|255503383|ref|ZP_05381773.1| DNA repair protein RecO [Chlamydia trachomatis 70s]
gi|255507061|ref|ZP_05382700.1| DNA repair protein RecO [Chlamydia trachomatis D(s)2923]
gi|289525515|emb|CBJ14992.1| DNA repair protein [Chlamydia trachomatis Sweden2]
gi|296435071|gb|ADH17249.1| DNA repair protein RecO [Chlamydia trachomatis E/150]
gi|296438791|gb|ADH20944.1| DNA repair protein RecO [Chlamydia trachomatis E/11023]
Length = 248
Score = 43.3 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 5/179 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M ++L ++++I+++ + G F +NG S + L +
Sbjct: 1 MQITLPGVVLTNSPAEKQHVIVKIFSPA-GLLSAFAKNGASLSCDFRESLFPISFSLFTI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + E+ S L + I + + +P L+ + FL
Sbjct: 60 QQSPPKMRKVIQGELQNPFTTIKSSYPLLQSAGKMIQAILKTQWHEKPSPHLFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK-CVVTGVTQDLLWVSPKSGGAVCRSVG 176
L LL++ G LDL++ C + + + + G C
Sbjct: 120 QRIPETQYPNFFSSMFLLKLLQHEG-SLDLSRSCTLCKTSLESSTIYRYEGALFCEKHA 177
>gi|313205924|ref|YP_004045101.1| hypothetical protein Riean_0426 [Riemerella anatipestifer DSM
15868]
gi|312445240|gb|ADQ81595.1| hypothetical protein Riean_0426 [Riemerella anatipestifer DSM
15868]
Length = 225
Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 7/157 (4%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNG--QSHRMQPILQAGNLVRVNWRS-RL 62
IL Y + +L V+ R+ G FV+N ++ + L V N +
Sbjct: 5 QGFILSYTKYNDSGAVLRVLEREAGIQSYFVKNIYLARNKQKVYLMPLMGVDFNVSKTKS 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
+ + E + + + +P LY + F
Sbjct: 65 GALPLVNQISLSEISKMIDFTLVNNAQMTLLAEFILKTVPYEVVEDSLYQCVEDFYINID 124
Query: 123 IPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQD 159
+ ++KNIG+G T+ +
Sbjct: 125 NK----NSLIFTIYSIIKNIGYGFLFTEGAFFDLKNG 157
>gi|116327965|ref|YP_797685.1| recombinational DNA repair protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330846|ref|YP_800564.1| recombinational DNA repair protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116120709|gb|ABJ78752.1| Recombinational DNA repair protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124535|gb|ABJ75806.1| Recombinational DNA repair protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 260
Score = 42.9 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 78/246 (31%), Gaps = 27/246 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRH-LGFVRNGQSHRMQPI--LQAGNLVRVNWRS-R 61
I+L R+ E + ++ ++ + G+ VR + + +PI ++ G+L +++ +
Sbjct: 13 RGIVLESRTIQEGDALIRLL-PEIGQVENFRVRGIRKSKTRPIASVEPGSLSDLDYYHSK 71
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ ++ + + + F P+ + +L+ L
Sbjct: 72 NKETYNVKEISLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGEFRLLSGALEEL 131
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ G I +L LL + GF C G + SV L +
Sbjct: 132 EKNGPSGLILPFFKLRLLVSGGFLSKELVCHSCG-----------TELKKMVSVILQTSP 180
Query: 182 KMLVLPSFLWKEEQTIDADSLKSAFQL--TDYFLNKYALQHNIIHC---------HLLRE 230
L+ + L + + F + + NI+ +LR+
Sbjct: 181 FELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRK 240
Query: 231 NFLGKL 236
L
Sbjct: 241 KLKSAL 246
>gi|308190060|ref|YP_003922991.1| recombinational DNA repair protein O [Mycoplasma fermentans JER]
gi|319777354|ref|YP_004137005.1| DNA repair protein reco [Mycoplasma fermentans M64]
gi|238809530|dbj|BAH69320.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624802|gb|ADN69107.1| recombinational DNA repair protein O [Mycoplasma fermentans JER]
gi|318038429|gb|ADV34628.1| DNA repair protein recO [Mycoplasma fermentans M64]
Length = 226
Score = 42.9 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 16 GEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRS---RLAQNLGEFR 70
+ + I++V ++ G + + + LQ G+LV + + +L +
Sbjct: 19 SDNDAIVQVYSKN-GIFSLLAKGVNKSESKNRVNLQIGSLVEIEYFQARLNNKVSLLKKA 77
Query: 71 FEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKI 130
+ + + + + + + P L++ LN +
Sbjct: 78 TLISDIDYSNRFNLIFIQKAVNLLKHFPK------PYYTLFETYVNCLNYL-GLGKNSML 130
Query: 131 FVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV 175
+ + L G +++ KC +L GG +C +
Sbjct: 131 YTYLLAHTLNYFGLDVNVNKCCECNSPSNLCDFKFYKGGFLCGNH 175
>gi|282858169|ref|ZP_06267364.1| DNA repair protein RecO [Pyramidobacter piscolens W5455]
gi|282584091|gb|EFB89464.1| DNA repair protein RecO [Pyramidobacter piscolens W5455]
Length = 247
Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 3/156 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWR-SR 61
+ ++L +Y E +I + + G + +V M+ V +++ +
Sbjct: 26 IKRTGVVLRRGNYMEGDIAALLFLKSGGTNWVYVPGASKGSMRFGGALEPFVWGHYQLYQ 85
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ EV E A + ++ L R L P +L + L
Sbjct: 86 SKRKTYLKEIEVTEDFWALRRHPRAVIQAVRWAKMLERHLIPGYPYDDLLALFYWALKAL 145
Query: 122 KIPSVIGKIFVQIEL-MLLKNIGFGLDLTKCVVTGV 156
+ + LL G DL C G
Sbjct: 146 SEGVAPELLDARFLWRWLLSW-GIAPDLRSCGSCGK 180
>gi|166154684|ref|YP_001654802.1| DNA repair protein RecO [Chlamydia trachomatis 434/Bu]
gi|166155559|ref|YP_001653814.1| DNA repair protein RecO [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335954|ref|ZP_07224198.1| DNA repair protein RecO [Chlamydia trachomatis L2tet1]
gi|238687387|sp|B0B843|RECO_CHLT2 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|238687486|sp|B0BCA8|RECO_CHLTB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|165930672|emb|CAP04169.1| DNA repair protein [Chlamydia trachomatis 434/Bu]
gi|165931547|emb|CAP07123.1| DNA repair protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 243
Score = 42.9 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 5/179 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M ++L ++++I+++ + G F +NG S + L +
Sbjct: 1 MQITLPGVVLTNSPAEKQHVIVKIFSPA-GLLSAFAKNGASLSCDFRESLFPISFSLFTI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + E+ S L + I + + +P L+ + FL
Sbjct: 60 QQSPPKMRKVIQGELQNPFTTIKSSYPLLQSAGKMIQAILKTQWHEKPSPHLFSLFFNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK-CVVTGVTQDLLWVSPKSGGAVCRSVG 176
L LL++ G LDL++ C + + + + G C
Sbjct: 120 QRIPETQYPNFFSSMFLLKLLQHEG-SLDLSRSCTLCKTSLESSTIYRYEGALFCEKHA 177
>gi|237755372|ref|ZP_04584000.1| hypothetical protein SULYE_0030 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692456|gb|EEP61436.1| hypothetical protein SULYE_0030 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 198
Score = 42.5 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 9/194 (4%)
Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWR 59
++D+AI+L + GEK++ + V T++ G+ +++NGQ + P L +
Sbjct: 4 IYKDEAIVLNRKFVGEKDLTITVYTKKSGKESIYIQNGQYLKNMPYSILSPFCWFKAVLI 63
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ + + F G I ++ P + E +L
Sbjct: 64 KIKDKLIISEIDSYKQIGYYISQDIEKFEAGFNIINFTYKLAPHQ---DERIFILLKKSL 120
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
S + K+ + L+ + + LDL + + + K
Sbjct: 121 YFLTISKLPKLLEILFLLKITYLNGELDLKRL----DLNNKEFDFLKGLMEKSIKEASQL 176
Query: 180 AEKMLVLPSFLWKE 193
+ + L +
Sbjct: 177 EIENVEFLESLRSK 190
>gi|293390946|ref|ZP_06635280.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290951480|gb|EFE01599.1| DNA repair protein RecO [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 98
Score = 42.1 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTID 198
++ +G+G+D T C +G T + + + +++ Q D
Sbjct: 1 MRTLGYGIDFTHCAGSGNTVEADMTYRYREEKGFIASLIKDNLTFYGRELLAFEQTQFDD 60
Query: 199 ADSLKSAFQLTDYFLNKYALQHNIIHCH-LLRENF 232
L +A + T + AL+ + RE F
Sbjct: 61 PSILLAAKRFT-----RIALKPYLGDKPLKSRELF 90
>gi|15828630|ref|NP_325990.1| hypothetical protein MYPU_1590 [Mycoplasma pulmonis UAB CTIP]
gi|14089572|emb|CAC13332.1| unknown; predicted coding region [Mycoplasma pulmonis]
Length = 228
Score = 41.7 bits (96), Expect = 0.075, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 15/192 (7%)
Query: 6 DAIILGVRSYGEKNIILEVM----TRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWR 59
I+L V+ Y E ++IL+V+ T + + + + L G++V +
Sbjct: 7 KGILLSVKDYSEHDVILKVLFIDSTE-----AILAKGIRKIESKNRSNLMVGSIVEFIYF 61
Query: 60 SRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN 119
+ R + +S + Q I L + E + +
Sbjct: 62 -KARLETKISRLKKATLIQLFDFTSVQNQFLFQRIFHFINQLTK---IDEYFFQSYSDIL 117
Query: 120 CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPY 179
++ I + +K++G + + C G ++ V GG +C + L
Sbjct: 118 NYQKKDCNSHIITFLYFRTMKSLGIEPNFSSCYRCGSFAQIVNVKVHEGGFLCSNCSLKR 177
Query: 180 AEKMLVLPSFLW 191
++ +
Sbjct: 178 KPIRMLKNFYYL 189
>gi|325475699|gb|EGC78875.1| recombination protein O [Treponema denticola F0402]
Length = 271
Score = 41.7 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 6/158 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYG----RHLGFVRNGQSHRMQPILQAGNLVRVNW 58
W +A++L ++++GE + ++ V G +++ ++ + V
Sbjct: 6 WSSEALVLSLKTFGEGHRNALLLLPDTEHSCKLVDAAVFGGPKSKLRSMVIPYHTGEVWI 65
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
S +N + + + L + ++ L L +
Sbjct: 66 YSNPIKNSNKISDFKVSDYRIGLSDNLTRIWCAAFAAELAVKLKGNI--DWQIINSFLTG 123
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156
S ++ ++ G D+ C G+
Sbjct: 124 IAVSSESECRTALLRFLWRVISLSGLAPDMEHCCRCGI 161
>gi|113955067|ref|YP_729822.1| DNA repair protein RecO [Synechococcus sp. CC9311]
gi|123132694|sp|Q0ICK0|RECO_SYNS3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|113882418|gb|ABI47376.1| DNA repair protein RecO [Synechococcus sp. CC9311]
Length = 271
Score = 41.3 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 17/167 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+ + L V GE + +L +++ G V + R +
Sbjct: 8 EGLALKVGPLGEHDRLLTLLSDDVGLIRLAVPGARKPRSSLAAAVPLTTMELQVGGRSGL 67
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
L + V + + +P + + + L ++ +
Sbjct: 68 LRVRQLRVQHNFGNVGQRLETLAAAQALSELSISLVAGDDPVPGMLSAVLMHLERLELLA 127
Query: 126 VIGKIFVQ-----------------IELMLLKNIGFGLDLTKCVVTG 155
+ + LL G+GL L C +G
Sbjct: 128 QKQRSSEMKSAEGERVDRTLATLVQACVHLLALGGYGLPLQTCCRSG 174
>gi|218264664|ref|ZP_03478427.1| hypothetical protein PRABACTJOHN_04134 [Parabacteroides johnsonii
DSM 18315]
gi|218221851|gb|EEC94501.1| hypothetical protein PRABACTJOHN_04134 [Parabacteroides johnsonii
DSM 18315]
Length = 218
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%)
Query: 24 VMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAK 80
+ T +GR V R +S + + ++V + ++L R L +
Sbjct: 1 MYTEAFGRASYLVARSRGKKSSVSKALFMPLSVVEMEVEHLNKRDLHRIRETKLCYPLTE 60
Query: 81 LLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK-IPSVIGKIFVQIELML 138
+ + + L LFR + E EP L++ L+ + + + + L L
Sbjct: 61 VFCNPVKNVLALFLSEVLFRVVKETEPDPHLFEYLSESIQLLELSDKGVANFHLVFLLRL 120
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVS 164
L +G ++ V L V
Sbjct: 121 LHYLGIYPNVESYVTGSCFDMLNGVF 146
>gi|188996541|ref|YP_001930792.1| hypothetical protein SYO3AOP1_0600 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931608|gb|ACD66238.1| hypothetical protein SYO3AOP1_0600 [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 198
Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPI--LQAGNLVRVNWRS 60
++D+AI+L + GEK++ + V T++ G+ +++NGQ + P L +
Sbjct: 5 YKDEAIVLNRKFVGEKDLTITVYTKKSGKESIYIQNGQYLKNMPYSILSPFCWFKAVLIK 64
Query: 61 RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
+ + + F G I ++ P + E +L
Sbjct: 65 IKDKLIISEIDSYKQIGYYISQDIEKFEAGFNIINFTYKLAPHQ---DEKIFILLKKSLY 121
Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTK 150
S + K+ + L+ + + LDL +
Sbjct: 122 FLTISKLPKLLEILFLLKITYLNGELDLKR 151
>gi|256838956|ref|ZP_05544466.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739875|gb|EEU53199.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 232
Score = 41.0 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 11 GVRSYGEKNIILEVMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVNWRSRLAQNLG 67
Y +K I+ + T +GR V R +S + + +++ + ++L
Sbjct: 2 HTIPYNDKYSIIYMYTEAFGRASYLVSRSRGKKSTVSKALFIPLSVLEMEVEHLNKRDLH 61
Query: 68 EFRFEVLESHCAKLLSSSLFL-YGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSV 126
+ + + + L LFR + + EP L+D L ++ +
Sbjct: 62 RIKETRICFPLNDVCCDPVKNVLALFLSEVLFRVVKDTEPDPRLFDYLYESIHLLEYADK 121
Query: 127 IGKIFVQI 134
F +
Sbjct: 122 GIANFHMV 129
>gi|124023836|ref|YP_001018143.1| recombination protein O [Prochlorococcus marinus str. MIT 9303]
gi|254764655|sp|A2CBL8|RECO_PROM3 RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|123964122|gb|ABM78878.1| possible Recombination protein O (RecO) [Prochlorococcus marinus
str. MIT 9303]
Length = 267
Score = 40.2 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQN 65
+ L V GE + +L +++ Q G V + R +L+ + R
Sbjct: 9 GLSLKVGPLGEHDRLLTLLSDQEGVTRLAVPGARRPRSSLAAAVPLSLLELQVAGRRGLA 68
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ +VL S + + +P L + L + L + S
Sbjct: 69 R-VRQLKVLRSFNSVGKQLETLAAAQALAELSLMLVAGNDPLPGLLNTLLMHLERLEALS 127
Query: 126 VIGKIFVQIE--------LMLLKNIGFGLDLTKCVVTG 155
+ LL G+GL + +C G
Sbjct: 128 QAQPAQPNTTLACSVQACVHLLALGGYGLPVQECCRNG 165
>gi|33862484|ref|NP_894044.1| putative recombination protein O [Prochlorococcus marinus str. MIT
9313]
gi|81577968|sp|Q7V8W2|RECO_PROMM RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|33640597|emb|CAE20386.1| Recombination protein O (RecO) [Prochlorococcus marinus str. MIT
9313]
Length = 267
Score = 39.8 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%)
Query: 7 AIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQN 65
+ L V GE + +L +++ Q G V + R +L+ + R
Sbjct: 9 GLSLKVGPLGEHDRLLTLLSDQEGVTRLAVPGARRPRSSLAAAVPLSLLELQVAGRRGLA 68
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ +VL S + + +P L + L + L + S
Sbjct: 69 R-VRQLKVLRSFNSVGKQLETLAAAQALAELSLMLVAGNDPLPGLLNTLLMHLERLEALS 127
Query: 126 VIGKIFVQIE--------LMLLKNIGFGLDLTKCVVTG 155
+ LL G+GL + +C G
Sbjct: 128 QAQPAQPNTTLACSVQACVHLLALGGYGLPVQECCRNG 165
>gi|169824434|ref|YP_001692045.1| putative recombinational DNA repair protein [Finegoldia magna ATCC
29328]
gi|302380701|ref|ZP_07269166.1| DNA repair protein RecO [Finegoldia magna ACS-171-V-Col3]
gi|167831239|dbj|BAG08155.1| putative recombinational DNA repair protein [Finegoldia magna ATCC
29328]
gi|302311644|gb|EFK93660.1| DNA repair protein RecO [Finegoldia magna ACS-171-V-Col3]
Length = 234
Score = 39.8 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 5/208 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ AI+L YGE +IIL V +++ G F+ N S + ++ +
Sbjct: 6 IKTQAIVLEHIVYGENSIILNVFSKEEGIIGIFINNINSMKSIIEFNVLSVNDFTL-KKG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
Q ++++ S+ + L+ L + + ++Y ++ +
Sbjct: 65 NQFYYLVDYDLINSNFNIRTNYRSELFSLVIVDLIKSIFYNEVCNEKVYALILKTVIFLS 124
Query: 123 IPSVIGK-IFVQIELMLLKNIGFGLDL---TKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
S + L L+ +G+ + + + +
Sbjct: 125 KYSEDQYALINAFILKLVSYLGYQPSMFYQNSHNRFYLDGGFVDSDGEYYQIDNLHAKYM 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAF 206
+ K+ ++I+ + +
Sbjct: 185 IYLMKNRYDDIINKKYESINENEILKIL 212
>gi|320450470|ref|YP_004202566.1| DNA repair protein RecO [Thermus scotoductus SA-01]
gi|320150639|gb|ADW22017.1| DNA repair protein RecO [Thermus scotoductus SA-01]
Length = 231
Score = 39.8 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 4/145 (2%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVR-NGQSHRMQPILQAGNLVRVNWRSRLA 63
++ I++G ++ + +++L +T + G R + L + VR ++
Sbjct: 8 EEGIVVGRKALLQGDLLLRFLTPK-GSLEAVARKGVRPSGRSGRLSLFHHVRFQLYTKGE 66
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E+L L + L L E +Y + L
Sbjct: 67 GLPTLTQAELLGRLHG--LEEPRRFLLASFLAELSYRLASPEAAPRIYPVFISGLRGIAK 124
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDL 148
V ++K G L
Sbjct: 125 HPRPLLPLVWAGWRVVKAGGLSPHL 149
>gi|303233749|ref|ZP_07320403.1| DNA repair protein RecO [Finegoldia magna BVS033A4]
gi|302495183|gb|EFL54935.1| DNA repair protein RecO [Finegoldia magna BVS033A4]
Length = 234
Score = 39.8 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 5/208 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ AI+L YGE +IIL V +++ G F+ N S + ++ +
Sbjct: 6 IKTQAIVLEHIVYGENSIILNVFSKEEGIIGIFINNINSMKSIIEFNVLSVNDFTL-KKG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
Q ++++ S+ + L+ L + + ++Y ++ +
Sbjct: 65 NQFYYLVDYDLINSNFNIRTNYRSELFSLVIVDLIKSIFYNEVCNEKVYALILKTVIFLS 124
Query: 123 IPSVIGK-IFVQIELMLLKNIGFGLDL---TKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
S + L L+ +G+ + + + +
Sbjct: 125 KYSEDQYALINAFILKLVSYLGYQPSMFYKNSHNRFYLDGGFVDSDGEYYQIDNLHAKYM 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAF 206
+ K+ ++I+ + +
Sbjct: 185 IYLMKNRYDDIINKKYESINENEILKIL 212
>gi|297566139|ref|YP_003685111.1| DNA repair protein RecO [Meiothermus silvanus DSM 9946]
gi|296850588|gb|ADH63603.1| DNA repair protein RecO [Meiothermus silvanus DSM 9946]
Length = 222
Score = 39.8 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 3/146 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLAQ 64
+ +++G + ++IL +T + G R + L + +R +
Sbjct: 8 EGLLIGRKPLPGGDVILSFVTPE-GAMQAVARKAMRPTGRSGRLSLFHHLRFQVYQKPGN 66
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L L L F Y FR ++ +L L
Sbjct: 67 DLPTLTQAELVGRLEGLEIPPRFAYASYLGELAFRLASPEVAS-RIWPILISGLRGIAKH 125
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTK 150
+ + V +L+ G +++
Sbjct: 126 ANPKVVLVWAGWRVLRAAGLQPNMSG 151
>gi|15835369|ref|NP_297128.1| DNA repair protein RecO [Chlamydia muridarum Nigg]
gi|270285545|ref|ZP_06194939.1| DNA repair protein RecO [Chlamydia muridarum Nigg]
gi|270289556|ref|ZP_06195858.1| DNA repair protein RecO [Chlamydia muridarum Weiss]
gi|301336942|ref|ZP_07225144.1| DNA repair protein RecO [Chlamydia muridarum MopnTet14]
gi|20139826|sp|Q9PJS3|RECO_CHLMU RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|7190780|gb|AAF39559.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 234
Score = 39.8 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 5/179 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M I+L ++++I ++ + G F +NG S + L +
Sbjct: 1 MQIILPGIVLTHSPAEKQHVIAKIFSPA-GLLSAFAKNGASLSCDFRESLLPISFSLFTI 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ + + E+ S L + I + + + +P +L+ + FL
Sbjct: 60 QHTPPKMRKVLQGELKNPFTTIKNSYRLLQSTGKMIQAILKTQWQEKPSPQLFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTK-CVVTGVTQDLLWVSPKSGGAVCRSVG 176
L LL++ G LDL+ C + + + V G C
Sbjct: 120 QRIPETPHPYFFSSMFLLKLLQHEG-SLDLSHSCTLCKSSLESSTVYRHEGSLFCEKHA 177
>gi|297588413|ref|ZP_06947056.1| recombination protein O [Finegoldia magna ATCC 53516]
gi|297573786|gb|EFH92507.1| recombination protein O [Finegoldia magna ATCC 53516]
Length = 234
Score = 39.4 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 5/208 (2%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62
+ AI+L YGE +IIL V +++ G F+ N S + ++ +
Sbjct: 6 IKTQAIVLEHIIYGENSIILNVFSKEEGIIGIFINNINSMKSIIEFNVLSVNDFTL-KKG 64
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK 122
Q ++++ S+ + L+ L + + ++Y ++ +
Sbjct: 65 NQFYYLVDYDLINSNFNIRTNYKSELFSLVIVDLIKSIFYNEVCNEKVYALILKTVIFLS 124
Query: 123 IPSVIGK-IFVQIELMLLKNIGFGLDL---TKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
S + L L+ +G+ + + + +
Sbjct: 125 KYSDNQYALINAFILKLVSYLGYQPSMFYENSHNRFYLDGGFVDSDGEYYQIDNLHAKYM 184
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAF 206
+ K+ ++I+ + +
Sbjct: 185 IYLMKNRYDDIVNKKFESINENEILKIL 212
>gi|160940877|ref|ZP_02088217.1| hypothetical protein CLOBOL_05769 [Clostridium bolteae ATCC
BAA-613]
gi|158436121|gb|EDP13888.1| hypothetical protein CLOBOL_05769 [Clostridium bolteae ATCC
BAA-613]
Length = 60
Score = 39.4 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNW 58
++L G+ + L ++TR+ G+ F + + + N+
Sbjct: 8 TGMVLLSAPSGDFDRRLVLLTRERGKITAFSHGARKPGNPLMAASRPFCFGNF 60
>gi|241889814|ref|ZP_04777112.1| DNA repair protein RecO [Gemella haemolysans ATCC 10379]
gi|241863436|gb|EER67820.1| DNA repair protein RecO [Gemella haemolysans ATCC 10379]
Length = 240
Score = 39.4 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 4/199 (2%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ Y + + IL V+T Q F N + + + V +N+ +
Sbjct: 8 TGIIIKKIRYRDYHEILHVLTEQGNIESFFYENVHKSKKKIKVSTPYEVSINFFP-TSGM 66
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
E+ ++ + Y + + + +Y +L + L +
Sbjct: 67 NKITNLEIENTYTNIVYDILKNSYVANMLEYVN---LINDDIFNMYKLLKVCLKNIENDV 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
+ + +LK GF K V L S + SV + +
Sbjct: 124 SEKLVLIYFLCQILKGQGFMFKYQKTDQPYVGYSFLKNSFVDKFNIDHSVYGLSDSLVKL 183
Query: 186 LPSFLWKEEQTIDADSLKS 204
K +++ +++
Sbjct: 184 TYYMTVKNIDFLESLEIEN 202
>gi|154491917|ref|ZP_02031543.1| hypothetical protein PARMER_01545 [Parabacteroides merdae ATCC
43184]
gi|154088158|gb|EDN87203.1| hypothetical protein PARMER_01545 [Parabacteroides merdae ATCC
43184]
Length = 218
Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 5/146 (3%)
Query: 24 VMTRQYGRHLGFV---RNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLE-SHCA 79
+ T +GR V R +S + + ++V + ++L R L
Sbjct: 1 MYTEAFGRASYLVARSRGKKSSVSKALFMPLSVVEMEVEHLNKRDLHRIRETKLCYPLTD 60
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHK-IPSVIGKIFVQIELML 138
+ + L LFR + E EP L++ L + + + + L L
Sbjct: 61 VFCNPVKNILALFLSEILFRVVKETEPDSRLFEYLFESIQLLELSDKGVANFHLVFLLRL 120
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVS 164
L +G ++ V L V
Sbjct: 121 LHYLGIYPNVESYVAGSCFDMLNGVF 146
>gi|313673514|ref|YP_004051625.1| hypothetical protein Calni_1554 [Calditerrivibrio nitroreducens DSM
19672]
gi|312940270|gb|ADR19462.1| hypothetical protein Calni_1554 [Calditerrivibrio nitroreducens DSM
19672]
Length = 221
Score = 39.0 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 2/131 (1%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQ 64
II + Y +++ I T Q GR FV N +Q + + +
Sbjct: 6 TKGIIYRIIKYSDRSAICFGFTEQRGRLKFFVSNAFGKNR--TIQKIFPAEITYIYKDNT 63
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+L + + + + + L I + L L+ + LN
Sbjct: 64 DLHKITAIEYLTGYSFFQTETPLYLRLNLIFEIIEDLFPLGSNLDELWRYLMGLNRENYI 123
Query: 125 SVIGKIFVQIE 135
+ I I
Sbjct: 124 KGVAYILFYIL 134
>gi|29839920|ref|NP_829026.1| DNA repair protein RecO [Chlamydophila caviae GPIC]
gi|29834267|gb|AAP04904.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
Length = 235
Score = 39.0 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 63/236 (26%), Gaps = 11/236 (4%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M+ AI L G+ + + + + G F + GQS + L +L +
Sbjct: 1 MHTLTPAIALQNLPLGKNHCVTTIFSP-LGLLTFFAKQGQSIYCDFREALIPLSLGIYSL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ EV S SL + + + +P EL+ + FL
Sbjct: 60 DYSPPKMRKLICAEVKNPFSEIKSSLSLLQAAGKMAQSILESQWQEKPSQELFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSV--- 175
+ L LL+ G + C T G C
Sbjct: 120 HRLPESKNPEMFAAAFLLKLLQYEGILDLSSTCAHCKKTISSPNFYRYQGRKFCLEHRPE 179
Query: 176 -GLPYAEKMLVLPSFLWKEEQTIDADSLKSA-FQLTDY---FLNKYALQHNIIHCH 226
+ + + L ++ D L + + ++ +
Sbjct: 180 NAVMIENEEEQILCALIHAKRFQDLLHLSNFHLEFSEKITLIFESTIHEGKNKKLP 235
>gi|313892325|ref|ZP_07825917.1| DNA repair protein RecO [Dialister microaerophilus UPII 345-E]
gi|313119184|gb|EFR42384.1| DNA repair protein RecO [Dialister microaerophilus UPII 345-E]
Length = 217
Score = 38.6 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 1/166 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-SHRMQPILQAGNLVRVNWRSRLAQ 64
+ I+L + G N I+ + T+ YG FV +L +R +
Sbjct: 11 EGILLHSKEAGNGNRIVFIFTKNYGNQTAFVSQSTIKSFGSGLLMPFTYLRCSMAETSFD 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++E S + I + P E + Y L L
Sbjct: 71 KWTLIQYEGKNICDISKFSYEDWCRWCFVIEIIKWGFPLGEKDINAYIRLVKCLKGILDK 130
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGA 170
+ ++ ML C + ++ +L + K
Sbjct: 131 NKQVSAYITALQMLYAAGYDASAQEMCELYNLSDELKTLLQKFINY 176
>gi|225848520|ref|YP_002728683.1| hypothetical protein SULAZ_0698 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643278|gb|ACN98328.1| hypothetical protein SULAZ_0698 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 198
Score = 38.6 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 71/191 (37%), Gaps = 3/191 (1%)
Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVN-WRSR 61
++D AI+L GEK++ L V T++ GR F++NGQ + P++ + +
Sbjct: 5 FKDQAIVLKRTFVGEKDLSLVVYTKKLGRESIFIQNGQLIKNLPVVSLTEFNWFSGVFFK 64
Query: 62 LAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCH 121
+ L + ++ +++ +I+ + ++ +L L
Sbjct: 65 IKDRLYISEIDNFKNVAIEIVKEYNRFLSAYNIISWIYNFAPHQ-DERIFILLKKTLYYL 123
Query: 122 KIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAE 181
+ + + + L+ + L+L + +DLL K+ + S+ +
Sbjct: 124 TLAKDTNLLELAFLVRLV-YLNGELNLNAIDLDTQERDLLTFLLKTPISKISSLLGEENQ 182
Query: 182 KMLVLPSFLWK 192
L L
Sbjct: 183 NPQKLKEKLLS 193
>gi|257460870|ref|ZP_05625971.1| acyl-CoA thioester hydrolase [Campylobacter gracilis RM3268]
gi|257442201|gb|EEV17343.1| acyl-CoA thioester hydrolase [Campylobacter gracilis RM3268]
Length = 204
Score = 38.3 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 18/167 (10%), Positives = 48/167 (28%), Gaps = 18/167 (10%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQ--------YG-RHLGFVRNGQ-----SHRMQPILQAG 51
IL +++ I++V++ YG RH ++ + S + +
Sbjct: 2 QGFILKTTKVRDEDCIVDVLSESALVRAYRFYGARHSNIIQGYKIDFELSQNQNFLPRLS 61
Query: 52 NLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY 111
++ + + + F + + A L + ++ ++ +
Sbjct: 62 GVMHLGYAWLGNREKLLFWQQFMRLLHAHLKDAEHLDKFYYELLSRAAARFGKQNPRRII 121
Query: 112 DMLNIFLNCHKIPSVIGKIFVQIELMLLKNI----GFGLDLTKCVVT 154
+ + + +L+NI GF C
Sbjct: 122 VESYAEILKFEGRLHDEPYCFLCDEEILENIALCRGFLPAHEHCAQR 168
>gi|326563903|gb|EGE14154.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
46P47B1]
gi|326566574|gb|EGE16720.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
12P80B1]
Length = 258
Score = 38.3 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 9/154 (5%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCA 79
+IL ++T +G+ +++ I + L + + A
Sbjct: 57 LILGLLTPTHGKIT--------KKVRHISYVPQRFNIPTILPLRAIDLLRQANPKRLNQA 108
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFLNCHKIPSVIGKIFVQIELML 138
+ L + L E L L + + + + E L
Sbjct: 109 QKDDIFDKLSITSLLSKQMHHLSGGETQRVLLVRALLDKPELLILDEPMQGLDPESESWL 168
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + + +C + V+ DL WV S +C
Sbjct: 169 YQFLDQLPEFLQCAMLVVSHDLHWVMKGSRRVIC 202
>gi|296112598|ref|YP_003626536.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
RH4]
gi|295920292|gb|ADG60643.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
RH4]
gi|326560859|gb|EGE11224.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
7169]
gi|326569758|gb|EGE19808.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
BC8]
gi|326570789|gb|EGE20814.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
BC1]
gi|326571636|gb|EGE21651.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
BC7]
gi|326575085|gb|EGE25013.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
CO72]
gi|326576829|gb|EGE26736.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
101P30B1]
gi|326577718|gb|EGE27594.1| zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis
O35E]
Length = 258
Score = 38.3 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 9/154 (5%)
Query: 20 IILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCA 79
+IL ++T +G+ +++ I + L + + A
Sbjct: 57 LILGLLTPTHGKIT--------KKVRHISYVPQRFNIPTILPLRAIDLLRQANPKRLNQA 108
Query: 80 KLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFLNCHKIPSVIGKIFVQIELML 138
+ L + L E L L + + + + E L
Sbjct: 109 QKDDIFDKLSITSLLSKQMHHLSGGETQRVLLVRALLDKPELLILDEPMQGLDPESESWL 168
Query: 139 LKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC 172
+ + + +C + V+ DL WV S +C
Sbjct: 169 YQFLDQLPEFLQCAMLVVSHDLHWVMKGSRRVIC 202
>gi|329121356|ref|ZP_08249982.1| hypothetical protein HMPREF9083_0443 [Dialister micraerophilus DSM
19965]
gi|327469765|gb|EGF15231.1| hypothetical protein HMPREF9083_0443 [Dialister micraerophilus DSM
19965]
Length = 217
Score = 37.9 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 1/135 (0%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQ-SHRMQPILQAGNLVRVNWRSRLAQ 64
+ I+L + G N I+ + T+ YG FV +L +R +
Sbjct: 11 EGILLHSKEAGNGNRIVFIFTKNYGNQTAFVSQSTIKSFGSGLLMPFTYLRCSMAETSFD 70
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
++E S + I + P E + Y L L
Sbjct: 71 KWTLIQYEGKNICDISKFSYEDWCRWCFVIEIIKWGFPLGEKDINAYIRLVKCLKGILDK 130
Query: 125 SVIGKIFVQIELMLL 139
+ ++ ML
Sbjct: 131 NKQVSAYITALQMLY 145
>gi|329942472|ref|ZP_08291282.1| DNA repair protein RecO [Chlamydophila psittaci Cal10]
gi|332287109|ref|YP_004422010.1| DNA repair protein RecO [Chlamydophila psittaci 6BC]
gi|325506883|gb|ADZ18521.1| DNA repair protein RecO [Chlamydophila psittaci 6BC]
gi|328815382|gb|EGF85370.1| DNA repair protein RecO [Chlamydophila psittaci Cal10]
gi|328914348|gb|AEB55181.1| DNA repair protein RecO [Chlamydophila psittaci 6BC]
Length = 241
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 34/216 (15%), Positives = 61/216 (28%), Gaps = 5/216 (2%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M+ AI L G+ + I + + G F + GQS + + L +L +
Sbjct: 1 MHTLTPAITLKNLPQGKHHCITTIFSP-LGLLTFFAKQGQSLYYDFRDALIPLSLGVYSL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ EV + L + + + +P EL+ + FL
Sbjct: 60 DHSPPRMRKLLFAEVKNTFSEIKSDLPLLQAAGKMTQSILGSQWQEKPSQELFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLP 178
+ L LL+ G T C T G C
Sbjct: 120 HRLPESKNPEMFAATFLLKLLQYEGILDLSTTCASCKKTILSSSFYRHKGRKFCIEHSPE 179
Query: 179 YAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLN 214
A + + + A + L+++ L
Sbjct: 180 SAVIIESEEEKIL--HALVHAKRFQDLLNLSNFHLE 213
>gi|304373214|ref|YP_003856423.1| Rec0 [Mycoplasma hyorhinis HUB-1]
gi|304309405|gb|ADM21885.1| Rec0 [Mycoplasma hyorhinis HUB-1]
gi|330723925|gb|AEC46295.1| Rec0 [Mycoplasma hyorhinis MCLD]
Length = 230
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 9/227 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
+IL V + EK++I++ +T + + + L++
Sbjct: 7 KGLILQVYEFQEKDLIVKTITNKR-IFSFVALGTRKPESKNKFALLESSISELEIFLSRL 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
++ ++ L + F + ++ L +
Sbjct: 66 N-NKLSKLKKATTEISLDLNNSKILEFWRFISFFLNKLEKTSNYFFENLKLAWEIIN-EQ 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLV 185
I V + L G + KCV ++L++ + GG C+ + +
Sbjct: 124 NYLHIVVFLLANHLVLQGHFISFNKCVKCMKNKNLIYFNFSLGGMFCKIHYKNKDLQNIS 183
Query: 186 LPSFLWKEEQTIDADSLKSAFQLTDYFL----NKYALQHNIIHCHLL 228
L + +++ D D FL K ++ N+
Sbjct: 184 LLKSYYF--LSLNLDQYLKFVNTIDNFLIYEQLKLFIEANLYSFPKN 228
>gi|328480089|gb|EGF49074.1| DNA repair protein recO [Lactobacillus rhamnosus MTCC 5462]
Length = 44
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 5/30 (16%), Positives = 21/30 (70%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGF 35
+ +++ ++Y E +++++++T Q+G+ +
Sbjct: 15 EGLVMSRQNYRESDMLVKILTDQFGKKCFW 44
>gi|62184795|ref|YP_219580.1| DNA repair protein RecO [Chlamydophila abortus S26/3]
gi|81313026|sp|Q5L6W2|RECO_CHLAB RecName: Full=DNA repair protein recO; AltName: Full=Recombination
protein O
gi|62147862|emb|CAH63608.1| DNA repair protein [Chlamydophila abortus S26/3]
Length = 241
Score = 37.1 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 7/205 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNW 58
M+ AI L G+ + I + + G F + GQS + + L +L N
Sbjct: 1 MHTLTPAITLKTLPQGKHHCITTIFSP-LGLLTFFAKQGQSLYYDFREALIPLSLGVYNL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ EV + L + + + +P EL+ + FL
Sbjct: 60 DHSPPKMRKLLFAEVKNTFTTIKSELPLLQAAGKMTQSILGSQWQEKPSQELFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVC----RS 174
+ L LL+ G T C T G C
Sbjct: 120 HRLPESKNPEMFAATFLLKLLQYEGILDLSTTCAACKKTILSASFYRHKGRKFCIEHSPE 179
Query: 175 VGLPYAEKMLVLPSFLWKEEQTIDA 199
+ + + L ++ D
Sbjct: 180 SAVMIENEEEKILHALVHAKRFQDL 204
>gi|289449826|ref|YP_003475262.1| DNA repair protein RecO [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184373|gb|ADC90798.1| DNA repair protein RecO [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 257
Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQP--ILQAGNLVRVNWRSRL 62
++ + EK+ +E++TR +G+ F + + + +L+ V R
Sbjct: 4 KGLVAKINQVKEKDAYIELITRDHGKISLFAQGILLPASRLHKLAVPFSLIEVELSERG 62
>gi|72080494|ref|YP_287552.1| hypothetical protein MHP7448_0155 [Mycoplasma hyopneumoniae 7448]
gi|71913618|gb|AAZ53529.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
Length = 226
Score = 36.7 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 12/219 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ ++ + ++I+++ T +G + + I + LA+N
Sbjct: 7 KGIIVDRLNFRDFDLIIKLAT-NFGIIKMVALGVRKTTSKNIYILNLGCLGEFEIFLAKN 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ L + + + E+ +++ +L +
Sbjct: 66 P--NKLSKLKKGECFLHLDLVNKNIYSFWKFSSQIMHEQNFEPKIFPILEQAFFKINTKN 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV--------SPKSGGAVCRSVGL 177
I +K G+ +LT C V Q L+
Sbjct: 124 ADAIKVYTIINW-IKFNGWIANLTSCKVCKTNQRLVNFDFAGGMECFRHRSLKPLIRFNP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
E + L + ID + S F + FLNK
Sbjct: 183 KELEIIYWSDFSLDLFLEKIDFYYIYSLFDVLKLFLNKN 221
>gi|54020102|ref|YP_115740.1| hypothetical protein mhp227 [Mycoplasma hyopneumoniae 232]
gi|53987275|gb|AAV27476.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
gi|312601110|gb|ADQ90365.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
Length = 226
Score = 36.7 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 12/219 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ ++ + ++I+++ T +G + + I + LA+N
Sbjct: 7 KGIIVDRLNFRDFDLIIKLAT-NFGIIKMVALGVRKTTSKNIYILNLGCLGEFEIFLAKN 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ L + + + E+ +++ +L +
Sbjct: 66 P--NKLSKLKKGECFLHLDLVNKNIYNFWKFSSQIMHEQNFEPKIFPILEQAFFKINTKN 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV--------SPKSGGAVCRSVGL 177
I +K G+ +LT C V Q L+
Sbjct: 124 ADAIKVYTIINW-IKFNGWIANLTSCKVCKTNQRLVNFDFAGGMECFRHRSLKPLIRFNP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
E + L + ID + S F + FLNK
Sbjct: 183 KELEIIYWSDFSLDLFLEKIDFYYIYSLFDVLKLFLNKN 221
>gi|157736986|ref|YP_001489669.1| putative recombination protein RecO [Arcobacter butzleri RM4018]
gi|157698840|gb|ABV67000.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
Length = 205
Score = 36.7 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 18/187 (9%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--------------PILQAG 51
IL ++ + ++I+ ++T + + I +
Sbjct: 2 QGYILDIKPVKDDDLIVTILTENELLTTYRFYGARHSNINIGYKIDFELEKTRSSISRLK 61
Query: 52 NLVRVNWRSRLAQNLGEFRFEVLESHCAKLLS----SSLFLYGLQSIVPLFRFLPEREPC 107
+++++ + L ++ L S + Y L ++V +
Sbjct: 62 DVLQLGFPWILDNEKMYCWQRYIKLFYPHLKDLEQVDSFYFYSLDNLVHIISKQNVLRAI 121
Query: 108 LELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS 167
E Y L F + IE + GF +KC++ ++ +
Sbjct: 122 CESYISLIEFEGRLHSDFECLLCELPIENEISLIRGFIPVHSKCILKSKVFEISKIKELF 181
Query: 168 GGAVCRS 174
Sbjct: 182 KEKKSIH 188
>gi|315636178|ref|ZP_07891432.1| conserved hypothetical protein [Arcobacter butzleri JV22]
gi|315479539|gb|EFU70218.1| conserved hypothetical protein [Arcobacter butzleri JV22]
Length = 205
Score = 36.7 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 18/187 (9%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ--------------PILQAG 51
IL ++ + ++I+ ++T + + I +
Sbjct: 2 QGYILDIKPVKDDDLIVTILTENELLTTYRFYGARHSNINIGYKIDFELEKTRSSISRLK 61
Query: 52 NLVRVNWRSRLAQNLGEFRFEVLESHCAKLLS----SSLFLYGLQSIVPLFRFLPEREPC 107
+++++ + L ++ L S + Y L ++V +
Sbjct: 62 DVLQLGFPWILDNEKMYCWQRYIKLFYPHLKDLEQVDSFYFYSLDNLVHIISKQNVLRAI 121
Query: 108 LELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKS 167
E Y L F + IE + GF +KC++ ++ +
Sbjct: 122 CESYISLIEFEGRLHSDFECLLCELPIENEISLIRGFIPVHSKCILKSRVFEISKIKDLF 181
Query: 168 GGAVCRS 174
Sbjct: 182 KEKKSIH 188
>gi|71893507|ref|YP_278953.1| hypothetical protein MHJ_0151 [Mycoplasma hyopneumoniae J]
gi|71851634|gb|AAZ44242.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
Length = 226
Score = 36.7 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 12/219 (5%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQN 65
II+ ++ + ++I+++ T +G + + I + LA+N
Sbjct: 7 KGIIVDRLNFRDFDLIIKLAT-NFGIIKMVALGVRKTTSKNIYILNLGCLGEFEIFLAKN 65
Query: 66 LGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPS 125
+ L+ L + + + E+ +++ +L +
Sbjct: 66 P--NKLSKLKKGECFLHLDLVNKNIYNFWKFSSQIMHEQNFEPKIFPILEQAFFKINAKN 123
Query: 126 VIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWV--------SPKSGGAVCRSVGL 177
I +K G+ +LT C V Q L+
Sbjct: 124 ADAIKVYTIINW-IKFNGWIANLTSCKVCKTNQRLVNFDFAGGMECFRHRSLKPLIRFNP 182
Query: 178 PYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKY 216
E + L + ID + S F + FLNK
Sbjct: 183 KELEIIYWSDFSLDLFLEKIDFYYIYSLFDVLKLFLNKN 221
>gi|237752637|ref|ZP_04583117.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376126|gb|EEO26217.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 203
Score = 36.7 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQ--------YGRHLGFVRNGQS------HRMQPILQAG 51
IL +++++++++T++ YG V G ++ I +
Sbjct: 2 QGYILSTTRVRDEDLLVKILTKEQIYTLYRFYGARHSVVHLGHKIDFSIEKDLREIGKLR 61
Query: 52 NLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELY 111
+ + + + F + L A L + S + E
Sbjct: 62 EPLHLAFSWEKEVQIRYFWQQYLHLLNAHLRDITTLDSFYFSHLEEGAKRLRIENPKRCI 121
Query: 112 DMLNIFLNCHKIPSVIGKIFVQIELML 138
L L + + + E L
Sbjct: 122 LNLYAKLLNFEGRKNTLQTCLICEQPL 148
>gi|55980592|ref|YP_143889.1| DNA repair protein RecO [Thermus thermophilus HB8]
gi|55772005|dbj|BAD70446.1| DNA repair protein RecO [Thermus thermophilus HB8]
Length = 229
Score = 36.3 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 4/147 (2%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLA 63
++ I++G + + +++L ++T G VR GQ + L + VR ++
Sbjct: 15 EEGIVVGRKPLPQGDLLLRLVTP-RGSLEAVVRKGQRPTGRTGRLSLFHHVRFQLYAKGE 73
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E+L L + + L L E +Y +L L
Sbjct: 74 GLPTLTQAELLGRLHG--LEAPRRFLLAAFLAELAYRLASPEAAPRIYPLLVSGLRGIAK 131
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTK 150
V + K G G +L
Sbjct: 132 HEDPLLPLVWAGWRVAKAGGIGPNLEG 158
>gi|258645784|ref|ZP_05733253.1| putative DNA repair protein RecO [Dialister invisus DSM 15470]
gi|260403155|gb|EEW96702.1| putative DNA repair protein RecO [Dialister invisus DSM 15470]
Length = 217
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
Query: 4 QDDAIILGVRSYGEKNIILEVMTRQYGRHLGFV-RNGQSHRMQPILQAGNLVRVNWRSRL 62
D+ I+L + + I +V T G +V + + + +R
Sbjct: 7 NDEGILLHAHAGKDGGKIADVFTLSAGLVRIYVGKTVLERCGSGGMVSFAFLRFTAWKDG 66
Query: 63 AQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDML 114
+ LS I + F P+ E +Y +L
Sbjct: 67 ENFFMSQYESRMLLDM-MNLSYEEMQCWYYVIELVSIFFPKEERNERVYRLL 117
>gi|164418514|gb|ABY54564.1| gag protein [Human immunodeficiency virus 1]
Length = 473
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR 55
M + AI++ ++ + I++ G+ RN ++ R + + G
Sbjct: 355 MSQTNSAILMQRSNFKDSKRIVKCF--NCGKEGHIARNCRAPRKKGCWKCGKEGH 407
>gi|164418512|gb|ABY54563.1| gag protein [Human immunodeficiency virus 1]
Length = 473
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR 55
M + AI++ ++ + I++ G+ RN ++ R + + G
Sbjct: 355 MSQTNSAILMQRSNFKDSKRIVKCF--NCGKEGHIARNCRAPRKKGCWKCGKEGH 407
>gi|164418510|gb|ABY54562.1| gag protein [Human immunodeficiency virus 1]
Length = 473
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR 55
M + AI++ ++ + I++ G+ RN ++ R + + G
Sbjct: 355 MSQTNSAILMQRSNFKDSKRIVKCF--NCGKEGHIARNCRAPRKKGCWKCGKEGH 407
>gi|164418506|gb|ABY54560.1| gag protein [Human immunodeficiency virus 1]
Length = 473
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR 55
M + AI++ ++ + I++ G+ RN ++ R + + G
Sbjct: 355 MSQTNSAILMQRSNFKDSKRIVKCF--NCGKEGHIARNCRAPRKKGCWKCGKEGH 407
>gi|164418490|gb|ABY54552.1| gag protein [Human immunodeficiency virus 1]
gi|164418500|gb|ABY54557.1| gag protein [Human immunodeficiency virus 1]
Length = 473
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVR 55
M + AI++ ++ + I++ G+ RN ++ R + + G
Sbjct: 355 MSQTNSAILMQRSNFKDSKRIVKCF--NCGKEGHIARNCRAPRKKGCWKCGKEGH 407
>gi|126642552|ref|YP_001085536.1| DNA repair protein [Acinetobacter baumannii ATCC 17978]
Length = 214
Score = 36.3 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 17/152 (11%)
Query: 22 LEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKL 81
+ + T++YGR G +R Q +R+ + ++ +
Sbjct: 1 MHLFTQEYGRVDGILR-------QTPPPQYQPIRLQATGKSELKN---FTKLEILNQPVF 50
Query: 82 LSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIG-------KIFVQI 134
F G + R P E + ++ + L + S +I Q
Sbjct: 51 FFGDAFFAGFYLNEIVLRLCPLEEAMPQTFEQYQLTLLQLQQLSSHENPDLFLRQILRQF 110
Query: 135 ELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPK 166
E +LL +G+ +D + + +
Sbjct: 111 EHILLAELGYAIDFSIDSSQKEILPQQFYQFQ 142
>gi|148377706|ref|YP_001256582.1| hypothetical protein MAG_4430 [Mycoplasma agalactiae PG2]
gi|148291752|emb|CAL59141.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
Length = 247
Score = 36.3 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 59/204 (28%), Gaps = 15/204 (7%)
Query: 8 IILGVRSY--GEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
I+L + Y E ++ V+ G F + + LQ G++ +++
Sbjct: 9 IVLKIEDYLQNENAALVTVLG-TNGVFKLFAPGVAKTISKNRQNLQIGSICEIDYFKARF 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
N + + + + + ++ L F + + Y+ + + +
Sbjct: 68 VNKFSKLKKASLLIMPHYEDNLVLKFISKMMLYLENFSSNSKEVFDAYEECLLKYDYYIK 127
Query: 124 PSVIG---------KIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ I LK G D +C+ +L+ G +C
Sbjct: 128 NGFEDIETKGNPLRYMITYIVSKALKYNGIQPDHHRCISCNSPANLVDFKFSEDGFICGQ 187
Query: 175 VGLPYA-EKMLVLPSFLWKEEQTI 197
K L FL+
Sbjct: 188 CTDNQRWTKELKSLYFLFNSLDKY 211
>gi|89898662|ref|YP_515772.1| DNA repair protein RecO [Chlamydophila felis Fe/C-56]
gi|89332034|dbj|BAE81627.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 247
Score = 36.3 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 50/178 (28%), Gaps = 3/178 (1%)
Query: 1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--MQPILQAGNLVRVNW 58
M+ AI L G+ + + + + G F ++GQ+ + L +L +
Sbjct: 1 MHTLTPAIALKNLPLGKNHCVTTIFSP-LGLLSFFAKHGQTLHCDFREALIPLSLGIYSL 59
Query: 59 RSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFL 118
+ EV S L + + + +P +L+ + FL
Sbjct: 60 DYSPPKMRKLISAEVNNPFSEIKSSFPLLQAAGKMGQSILESQWQEKPSQKLFSLFLNFL 119
Query: 119 NCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVG 176
+ L LL+ G + C G C G
Sbjct: 120 HRLPESKNPEMFSATFLLKLLQYEGILDLSSTCATCKQHIPTQQCYRHKGMKFCLEHG 177
>gi|237739233|ref|ZP_04569714.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
gi|229422841|gb|EEO37888.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
Length = 120
Score = 35.9 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 152 VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY 211
V+ ++ S V + L +A+ + L EE+ D + + A
Sbjct: 20 VLLEEVKNPKIKGLVSVTEVNVTEDLKFADTYFSILPPLNNEEKQYDNEEILEALNEIKG 79
Query: 212 FLNKYALQHNIIHC-HLLRENFLGKLLELI 240
FL K + I +R + +
Sbjct: 80 FLRKRVAEEVDIRFTPEIRVKLDNSMENAM 109
>gi|297848208|ref|XP_002891985.1| hypothetical protein ARALYDRAFT_474819 [Arabidopsis lyrata subsp.
lyrata]
gi|297337827|gb|EFH68244.1| hypothetical protein ARALYDRAFT_474819 [Arabidopsis lyrata subsp.
lyrata]
Length = 338
Score = 35.9 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 7/139 (5%)
Query: 9 ILGVRSYG-EKNIILEVM--TRQY--GRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLA 63
+L +YG EK + + T Y G G + + + + L L V R
Sbjct: 13 VLSATAYGGEKRAYVTFLAGTGDYVKGVV-GLAKGLRKAKSKYPLVVAVLPDVPEDHRKQ 71
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDM-LNIFLNCHK 122
+ +E + + R E +Y +
Sbjct: 72 LVDQGCVVKEIEPVYPPENQTEFAMAYYVINYSKLRIWKFVEYSKMIYLDGDIQVFDNID 131
Query: 123 IPSVIGKIFVQIELMLLKN 141
+ +
Sbjct: 132 HLFDLPNGQFYAVMDCFCE 150
>gi|46198566|ref|YP_004233.1| hypothetical protein TTC0258 [Thermus thermophilus HB27]
gi|46196188|gb|AAS80606.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length = 291
Score = 35.6 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 4/147 (2%)
Query: 5 DDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-PILQAGNLVRVNWRSRLA 63
++ I++G + + +++L ++T + G VR GQ + L + VR ++
Sbjct: 77 EEGIVVGRKPLPQGDLLLRLVTPK-GSLEAVVRKGQRPTGRTGRLSLFHHVRFQLYAKGE 135
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKI 123
+ E+L L + + L L E +Y +L L
Sbjct: 136 GLPTLTQAELLGRLHG--LEAPRRFLLAAFLAELAYRLASPEAAPRIYPLLVSGLRGIAK 193
Query: 124 PSVIGKIFVQIELMLLKNIGFGLDLTK 150
V + K G G L
Sbjct: 194 HEDPLLPLVWAGWRVAKAGGIGPSLEG 220
>gi|294783783|ref|ZP_06749107.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
gi|294480661|gb|EFG28438.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
Length = 120
Score = 35.6 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 152 VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY 211
V+ ++ S V + L +A+ + L EE+ D + + A
Sbjct: 20 VLLEEVKNPKIKGLVSVTEVNVTEDLKFADTYFSILPPLNDEEKQYDHEEILEALNEIKG 79
Query: 212 FLNKYALQHNIIHC-HLLRENFLGKLLELI 240
FL K + I +R + +
Sbjct: 80 FLRKRVAEEVDIRFTPEIRVKLDNSMENAM 109
>gi|291320369|ref|YP_003515632.1| hypothetical protein MAGa4650 [Mycoplasma agalactiae]
gi|290752703|emb|CBH40677.1| Conserved hypothetical protein [Mycoplasma agalactiae]
Length = 247
Score = 35.6 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 15/204 (7%)
Query: 8 IILGVRSY--GEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLA 63
I+L + Y E ++ V+ G F + + LQ G++ +++
Sbjct: 9 IVLKIEDYLQNENAALVTVLG-TNGVFKLFAPGVAKTISKNRQNLQIGSICEIDYFKARF 67
Query: 64 QNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLN---- 119
N + + + + + ++ L + + + Y+ + +
Sbjct: 68 VNKFSKLKKASLLIMPHYEDNLVLKFISKMMLYLENYSSNSKEVFDAYEECLLKYDYYVK 127
Query: 120 -----CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRS 174
+ + + + LK G + +C+ +L+ GG +C
Sbjct: 128 NGFEDIETKGNPLRYMITYLVSKSLKYNGIQPNHHRCISCNSPANLVDFKFSEGGFICGQ 187
Query: 175 VGLPYA-EKMLVLPSFLWKEEQTI 197
K L FL+
Sbjct: 188 CTENQRWTKELKSLYFLFNSLDKY 211
>gi|237743257|ref|ZP_04573738.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|256028612|ref|ZP_05442446.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|260495120|ref|ZP_05815249.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289766530|ref|ZP_06525908.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|229433036|gb|EEO43248.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|260197563|gb|EEW95081.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289718085|gb|EFD82097.1| ribosome-binding factor A [Fusobacterium sp. D11]
Length = 120
Score = 35.6 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 152 VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY 211
V+ ++ S V + L +A+ + L +E+ D + + A
Sbjct: 20 VLLEEVKNPKIKGLVSVTEVDVTEDLKFADTYFSILPPLNSDEKQYDNEEILEALNEIKG 79
Query: 212 FLNKYALQHNIIHC-HLLRENFLGKLLELI 240
FL K + I +R + I
Sbjct: 80 FLRKRVAEEVDIRYTPEIRVKLDNSMENAI 109
>gi|213027935|ref|ZP_03342382.1| DNA repair protein RecO [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 79
Score = 35.6 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 32 HLGFVRNGQSHRM--QPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLY 89
+ +S R + LQ + + + R A LS
Sbjct: 1 MRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLR---SAEAVSLALPLSGITLYS 57
Query: 90 GLQSIVPLFRFLPEREPCLEL 110
GL L R L EL
Sbjct: 58 GLYINELLSRVLEYETRFSEL 78
>gi|19705315|ref|NP_602810.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328563|ref|ZP_06871082.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|22096032|sp|Q8RHJ7|RBFA_FUSNN RecName: Full=Ribosome-binding factor A
gi|19713286|gb|AAL94109.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154372|gb|EFG95171.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 120
Score = 35.2 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 152 VVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDY 211
V+ ++ S V + L +A+ + L +E+ D + + A
Sbjct: 20 VLLEEVKNPKIKGLVSVTEVDVTEDLKFADTYFSILPPLKSDEKKYDHEEILEALNEIKG 79
Query: 212 FLNKYALQHNIIHC-HLLRENFLGKLLELI 240
FL K + I +R + I
Sbjct: 80 FLRKRVAEEVDIRYTPEIRVKLDNSMENAI 109
>gi|281212554|gb|EFA86714.1| STAG domain-containing protein [Polysphondylium pallidum PN500]
Length = 871
Score = 35.2 bits (79), Expect = 8.4, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 158 QDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYA 217
L +S S + + + + +F ++ L + + FL K
Sbjct: 466 DSLRTISAPSESSGTDAEASGGDQANQLFNAFTLLQKIHFSPKELANFLNI---FLEKTI 522
Query: 218 LQHNIIHCHLLR 229
L ++ L R
Sbjct: 523 LNIYSLNVPLSR 534
>gi|223038738|ref|ZP_03609031.1| tRNA-dihydrouridine synthase B [Campylobacter rectus RM3267]
gi|222880140|gb|EEF15228.1| tRNA-dihydrouridine synthase B [Campylobacter rectus RM3267]
Length = 512
Score = 34.8 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 19/195 (9%), Positives = 41/195 (21%), Gaps = 22/195 (11%)
Query: 6 DAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHR--------------------MQ 45
IL + ++++++ ++T + ++
Sbjct: 310 QGYILHTQKVRDEDLLVYILTPSLLVKSYRFYGARHSNVLQGYKIDFELEGGENFLPHLR 369
Query: 46 PILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPERE 105
+L G + R RL R + + F R P+R
Sbjct: 370 SVLHLGYR-WLLSRERLLVWQQFMRLLYAHLRDVEQIDEVYFCELELCASRFDRGAPKRL 428
Query: 106 PCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSP 165
+L H + + L F C +
Sbjct: 429 LIESYVRILEAEGRLHDELFCFICDEPVEDRVALAR-SFLPAHEHCAAQKGFEVEKIKML 487
Query: 166 KSGGAVCRSVGLPYA 180
S +
Sbjct: 488 FSERSTLLLDDDEID 502
>gi|206896335|ref|YP_002246851.1| hypothetical protein COPRO5265_0492 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738952|gb|ACI18030.1| hypothetical protein COPRO5265_0492 [Coprothermobacter
proteolyticus DSM 5265]
Length = 210
Score = 34.8 bits (78), Expect = 10.0, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 24/153 (15%)
Query: 12 VRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQ-------PILQAGNLVRVNWRSRLAQ 64
Y E +++L V+ G+ L VR+G+ + + G +++V L
Sbjct: 3 RIPYRETDLLLSVLGEHIGKELLTVRSGRKIPNRWKSSFLEGSILLGRILQVKNHHVLTG 62
Query: 65 NLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIP 124
+ E + +L L + L
Sbjct: 63 VITEKYVPYEKYSPFMIL-----------------ALEMFSKTPSVDRSSFQLLEKFLTS 105
Query: 125 SVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157
+ F Q + + L CVV G
Sbjct: 106 EQTARDFDQFLVSFMVKESLQPSLNSCVVCGEK 138
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.122 0.324
Lambda K H
0.267 0.0374 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,753,407,139
Number of Sequences: 14124377
Number of extensions: 75267036
Number of successful extensions: 231934
Number of sequences better than 10.0: 2115
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 228779
Number of HSP's gapped (non-prelim): 2179
length of query: 240
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 105
effective length of database: 2,936,002,735
effective search space: 308280287175
effective search space used: 308280287175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 79 (35.2 bits)