RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780948|ref|YP_003065361.1| DNA repair protein RecO
[Candidatus Liberibacter asiaticus str. psy62]
         (240 letters)



>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
           C-terminal domain {Deinococcus radiodurans [TaxId:
           1299]}
          Length = 157

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 15/127 (11%)

Query: 99  RFLPEREPCLELYDML---NIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTG 155
               E E   + +D+       +     P  +  +       LL   G      +C   G
Sbjct: 21  ALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVM---SYKLLGLAGVIPQTARCARCG 77

Query: 156 VTQDLLWVSPKSGGAVCRSVGLPYA--------EKMLVLPSFLWKEEQTIDADSLKSAFQ 207
              D     P  G  +C                 +  V  +     EQ + +    + ++
Sbjct: 78  -APDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWR 136

Query: 208 LTDYFLN 214
             + F+ 
Sbjct: 137 ALEKFVT 143


>d1u5ka1 b.40.4.13 (A:2-80) Recombinational repair protein RecO,
          N-terminal domain {Deinococcus radiodurans [TaxId:
          1299]}
          Length = 79

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 2  YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSR 61
                I++  R     +II+ ++T Q        R G    +   L   + V V     
Sbjct: 4  TANRSGIVIRRRVTPAGDIIVTLLTPQGKLK-AIARGGVKGPLSSSLNLFHHVGVQVYQG 62

Query: 62 LAQNLG 67
             +L 
Sbjct: 63 PHNDLA 68


>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
           {Methylosinus trichosporium [TaxId: 426]}
          Length = 383

 Score = 26.0 bits (57), Expect = 2.8
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 19/73 (26%)

Query: 2   YWQDDAIILGVRSYGEKNII-----LEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRV 56
            W  D I  G R+  ++         E++          V              G   R 
Sbjct: 210 IWTTDPIYSGARATVQEIWQGVQDWNEILWAG-----HAV-------YDATF--GQFARR 255

Query: 57  NWRSRLAQNLGEF 69
            +  RLA   G+ 
Sbjct: 256 EFFQRLATVYGDT 268


>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
           (Aplysia californica), twk43 [TaxId: 6500]}
          Length = 352

 Score = 24.6 bits (53), Expect = 8.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 215 KYALQHNIIHCHLLRENFL 233
           K+  +H+I+H  +  EN +
Sbjct: 141 KHMHEHSIVHLDIKPENIM 159


>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
           serotype E [TaxId: 1491]}
          Length = 411

 Score = 24.4 bits (53), Expect = 8.4
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 77  HCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
           H   L+ S   LYG + I   +    ++ P +      NI
Sbjct: 211 HQ--LIHSLHGLYGAKGITTKYTITQKQNPLITNIRGTNI 248


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,490
Number of extensions: 40771
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 13
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)