BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780948|ref|YP_003065361.1| DNA repair protein RecO
[Candidatus Liberibacter asiaticus str. psy62]
         (240 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 240

 Score =  493 bits (1270), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60
           MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS
Sbjct: 1   MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRS 60

Query: 61  RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120
           RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC
Sbjct: 61  RLAQNLGEFRFEVLESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNC 120

Query: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180
           HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA
Sbjct: 121 HKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYA 180

Query: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240
           EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI
Sbjct: 181 EKMLVLPSFLWKEEQTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLRENFLGKLLELI 240


>gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 161

 Score = 25.4 bits (54), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 84  SSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116
           S L     + IV L RFLP R P L +  ++NI
Sbjct: 3   SDLACLDAKDIVELMRFLPHRYPFLLVDKVVNI 35


>gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 199

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 87  FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQI 134
           +L+   +I+  F  +  R P   ++ ++  F+N   +  ++G  FV +
Sbjct: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56


>gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 276

 Score = 22.3 bits (46), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 148 LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEE----QTIDADSLK 203
           L   ++ G+ Q+ L  +     A    +G  Y E+++V+P  L +         D DSL+
Sbjct: 180 LGMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQ 239

Query: 204 SAFQLT 209
              +++
Sbjct: 240 KQREIS 245


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.143    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,749
Number of Sequences: 1233
Number of extensions: 6230
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 328,796
effective HSP length: 71
effective length of query: 169
effective length of database: 241,253
effective search space: 40771757
effective search space used: 40771757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 37 (18.9 bits)