HHsearch alignment for GI: 254780949 and conserved domain: COG0180
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.85 E-value=1.8e-19 Score=148.68 Aligned_cols=256 Identities=15% Similarity=0.195 Sum_probs=180.9
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 49818999843787620243489999999999859-84999982601114488988621024688999999999999988
Q gi|254780949|r 33 QGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTG-HKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFS 111 (418)
Q Consensus 33 ~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~G-h~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~ 111 (418)
T Consensus 3 ~~~~~vlSG~~PSG~-lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~--------~~~~~~~l~~~~~---e~~a 70 (314)
T COG0180 3 MKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVR--------QDPTEEDLRQATR---EVAA 70 (314)
T ss_pred CCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCC--------CCCHHHHHHHHHH---HHHH
T ss_conf 888567756788997-521576999999999853557549999627775548--------8876999999999---9999
Q ss_pred HHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765326777640233016752343134688875223447875347888874035-6883157889898989999999854
Q gi|254780949|r 112 SFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKR-EQSLSFLEFNYMILQAYDFVELAKN 190 (418)
Q Consensus 112 ~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~-~~~is~~EF~Y~llQayD~~~L~~~ 190 (418)
T Consensus 71 ~~LA~GiDP~k~~if~QS~v~e-~~eLa~~--l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl~~a~ 147 (314)
T COG0180 71 DYLAVGLDPEKSTIFLQSEVPE-HAELAWL--LSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILLYQAT 147 (314)
T ss_pred HHHHHCCCCCCCEEEECCCCHH-HHHHHHH--HHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHCCHHHHHHHHHCCCC
T ss_conf 9987046856027998068667-9999999--986175999985237643332343566410210549988876502687
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHHHCCCC--CEEEEEE------CEEECCCC-HHHHHHHHC-CCCCCCCCCCHHHHHHH
Q ss_conf 29702015412588998889999731679--7179831------10236871-022354310-12333457997999998
Q gi|254780949|r 191 YDCRLQMGGSDQWGNIICGIDLGERLKTP--KLFALTS------PLLTTASG-TKMGKTLSG-AIWLNKEMTSPYNFWQY 260 (418)
Q Consensus 191 ~~~~iqiGGsDQwgNi~~G~eLir~~~~~--~~~glT~------PLLt~~dG-~KmgKS~~n-aIwLd~~~tSPy~fyQf 260 (418)
T Consensus 148 -~VPV---G~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~---D~~~~i~kK 220 (314)
T COG0180 148 -LVPV---GEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL---DDPKTIRKK 220 (314)
T ss_pred -EECC---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC---CCHHHHHHH
T ss_conf -5104---888539999999999998744667537860014477746478999866666999824504---998999999
Q ss_pred HHH-HCHH---------------HHHHHHHHHCCCCHHHHHHHHHH-HH--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 862-0788---------------89879975068885675554333-21--02202688989999997300
Q gi|254780949|r 261 WRN-IDDA---------------DVVSFAKRLTTLPMSEIDRMAKL-QG--KEINEAKKIIATEITTMVHG 312 (418)
Q Consensus 261 ~~n-~~D~---------------dV~kyLklfT~l~l~EI~~l~~~-~~--~~pr~aKk~LA~EiT~lvHG 312 (418)
T Consensus 221 I~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~--~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~ 289 (314)
T COG0180 221 IKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFE--DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKP 289 (314)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9985269987502589999985649999998668--97499999998445635699999999999999999