HHsearch alignment for GI: 254780949 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.55 E-value=0.0023 Score=42.46 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=39.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHH
Q ss_conf 89999984997886899999876987988798048000237777
Q gi|254780949|r 352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395 (418)
Q Consensus 352 l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d 395 (418)
T Consensus 2 LD~lLv~rgl~~sR~~Ak~lI~kG~V~VN~~~v~KP~~~v~~~~ 45 (240)
T TIGR00478 2 LDILLVKRGLVESREKAKRLILKGEVLVNKKKVDKPSALVDKDA 45 (240)
T ss_pred CHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCC
T ss_conf 03677650114578999999873945555765208860441676