HHsearch alignment for GI: 254780949 and conserved domain: cd00395
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=0 Score=444.15 Aligned_cols=255 Identities=35% Similarity=0.481 Sum_probs=236.3
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18999843787620243489999999999859849999826011144889886210246889999999999999887653
Q gi|254780949|r 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIK 115 (418)
Q Consensus 36 ~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~ 115 (418)
T Consensus 1 ~rvy~G~~PTg-~lHlG~~v~~~~~~~~q~~g~~~~~~iaD~~a~~~d~~--------~~~~~i~~~~~~~~~~~~a~g~ 71 (274)
T cd00395 1 LRVYSGIDPTG-SLHLGHYVGAIKLKVLQQAGHEVIILIADLHALTGDPS--------LDPEEIRKNAREIAKQILALGL 71 (274)
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 97999058887-14689999999999999889988999907711437999--------9999999999999999999779
Q ss_pred CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 26777640233016752343134688875223447875347888874035688315788989898999999985429702
Q gi|254780949|r 116 YGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRL 195 (418)
Q Consensus 116 ~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~i 195 (418)
T Consensus 72 ---d~~k~~i~~~S~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDil~~~----~~~ 144 (274)
T cd00395 72 ---DPEKATIVFQSDWLLKLEHLELLRLLGKHVTVGRLLRMDGFKDRLAEEEGISLGEFTYPVLQAADILLLK----ADL 144 (274)
T ss_pred ---CHHHCEEEEHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHC----CCC
T ss_conf ---9477278632310772569999999967376889973367887762368977002324307653177650----654
Q ss_pred ECCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECEEECCCC-HHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHCHH-----
Q ss_conf 015412588998889999731-679717983110236871-022354310123-334579979999988620788-----
Q gi|254780949|r 196 QMGGSDQWGNIICGIDLGERL-KTPKLFALTSPLLTTASG-TKMGKTLSGAIW-LNKEMTSPYNFWQYWRNIDDA----- 267 (418)
Q Consensus 196 qiGGsDQwgNi~~G~eLir~~-~~~~~~glT~PLLt~~dG-~KmgKS~~naIw-Ld~~~tSPy~fyQf~~n~~D~----- 267 (418)
T Consensus 145 v~~G~DQ~~~~~l~Rdia~k~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~i~l~---Dsp~~i~~KI~~a~td~~~~~ 221 (274)
T cd00395 145 VPGGSDQDPHIELGRDLARRFNGFKKPVALTSPLLTGLDGGKKMSKSDGNAIIFLL---DSPEEIYKKIMKAYTDPGRVR 221 (274)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECC---CCHHHHHHHHEECCCCCCCCC
T ss_conf 55561179999999999999449999868723774468997674578998446546---999999998722408997655
Q ss_pred --------HHHHHHHHHCCCCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHH
Q ss_conf --------89879975068885675554333---2102202688989999997
Q gi|254780949|r 268 --------DVVSFAKRLTTLPMSEIDRMAKL---QGKEINEAKKIIATEITTM 309 (418)
Q Consensus 268 --------dV~kyLklfT~l~l~EI~~l~~~---~~~~pr~aKk~LA~EiT~l 309 (418)
T Consensus 222 ~~~~~~~~~v~~~~~~~~~~~~~~i~e~~~~~~~g~~~~~~~K~~Lae~I~e~ 274 (274)
T cd00395 222 EGGGPEENNVLEILKLFTFLDDEEIEEIKEDYRSGGLGPGDLKKLLAEEITEL 274 (274)
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 78998868699999998789999999999999748989889999999999859