HHsearch alignment for GI: 254780949 and conserved domain: cd00808
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.58 E-value=0.16 Score=30.27 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=83.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCC
Q ss_conf 37876202434899999999998-598499998260111448898862102468899999999999998876-5326777
Q gi|254780949|r 43 DLTASSLHAGHLTQLMLLFWLQK-TGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSF-IKYGTGK 120 (418)
Q Consensus 43 DpT~~slH~G~l~~~~~l~~~q~-~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~-~~~~~~~ 120 (418)
T Consensus 9 sPtG~-LHiG~~rtal~n~l~Ar~~~G~f~L-------RieDt---D~~R~~------~e~~~~I~~dL~wLGl~wDe~~ 71 (239)
T cd00808 9 SPTGY-LHIGGARTALFNYLFAKKHGGKFIL-------RIEDT---DQERSV------EEAEEAILEDLKWLGIDWDEGP 71 (239)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHCCEEEE-------EECCC---CCCCCC------HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98985-3389999999999999981998999-------84568---988787------6999999999998188877464
Q ss_pred CCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCEECC
Q ss_conf 64023301675234313468887522344787534788887403568831578898989899999998542--9702015
Q gi|254780949|r 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNY--DCRLQMG 198 (418)
Q Consensus 121 ~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~--~~~iqiG 198 (418)
T Consensus 72 ~~--~~~~~py~QS~r-~~~Y~~--------------~~~~L~~~gDG~-------P---tY~fA~vvDD~~~~IThviR 124 (239)
T cd00808 72 DV--GGPYGPYRQSER-LDIYKK--------------YAEQLLEEGDGF-------P---TYHFANVVDDHLMGITHVIR 124 (239)
T ss_pred CC--CCCCCCCCCCCC-HHHHHH--------------HHHHHHHCCCCC-------C---CCCCCCEECCCCCCCCEEEE
T ss_conf 66--888878042107-999999--------------999767659988-------4---23435164265479988971
Q ss_pred CCHHHHHHHHHHHHHHHCCCC-CEEEEEECEEECCCCHHHHHHHHC
Q ss_conf 412588998889999731679-717983110236871022354310
Q gi|254780949|r 199 GSDQWGNIICGIDLGERLKTP-KLFALTSPLLTTASGTKMGKTLSG 243 (418)
Q Consensus 199 GsDQwgNi~~G~eLir~~~~~-~~~glT~PLLt~~dG~KmgKS~~n 243 (418)
T Consensus 125 g~D~~~~t~~q~~l~~~Lg~~~P~f~-Hlpli~~~~g~kLSKR~~~ 169 (239)
T cd00808 125 GEEHLSSTPKQILLYEALGWEPPKFA-HLPLILNPDGKKLSKRHGD 169 (239)
T ss_pred CHHHHCCCHHHHHHHHHCCCCCCEEE-CCCCEECCCCCCCCCCCCH
T ss_conf 52410577999999996489998032-6624268998977670872