HHsearch alignment for GI: 254780949 and conserved domain: cd00814
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=97.96 E-value=6.4e-05 Score=52.73 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHH----HHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHH
Q ss_conf 620243489999----99999985984999982601114488988621024688999-99999999998876
Q gi|254780949|r 47 SSLHAGHLTQLM----LLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEI-QENIEKIKGIFSSF 113 (418)
Q Consensus 47 ~slH~G~l~~~~----~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i-~~n~~~~~~q~~~~ 113 (418)
T Consensus 13 g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~--~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~~L 82 (319)
T cd00814 13 GVPHLGHLYGTVLADVFARYQRLRGYDVLFVTG--TDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFKWL 82 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECC--CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 985533068899999999999965995699687--7787089999999839987999999999999999984