HHsearch alignment for GI: 254780949 and conserved domain: cd00818
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.09 E-value=0.0058 Score=39.82 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCEECCCCHHH---HHH--HHHHHHHHHCCCCC-EEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 970201541258---899--88899997316797-179831102368710223543101233345799799999886207
Q gi|254780949|r 192 DCRLQMGGSDQW---GNI--ICGIDLGERLKTPK-LFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNID 265 (418)
Q Consensus 192 ~~~iqiGGsDQw---gNi--~~G~eLir~~~~~~-~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~ 265 (418)
T Consensus 253 p~~~~~~GkDi~~~~f~~~~~~~~~~---~~~~P~~~v~~hg~~l~~~G~KMSKS~GnvI~p~-------~~l~~----y 318 (339)
T cd00818 253 PADFILEGSDQTRGWFYSLLLLSTAL---FGKAPYKNVIVHGFVLDEDGRKMSKSLGNVVDPQ-------EVIDK----Y 318 (339)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH---CCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHH-------HHHHH----C
T ss_conf 66056606331233799999987885---4899852148898499999866278899878989-------99987----6
Q ss_pred HHHHHHHHHH
Q ss_conf 8889879975
Q gi|254780949|r 266 DADVVSFAKR 275 (418)
Q Consensus 266 D~dV~kyLkl 275 (418)
T Consensus 319 ~~D~lRyyl~ 328 (339)
T cd00818 319 GADALRLWVA 328 (339)
T ss_pred CCHHHHHHHH
T ss_conf 9479999999