HHsearch alignment for GI: 254780949 and conserved domain: cd02156
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.96 E-value=0.0015 Score=43.77 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 84378762024348999999999985984999982601114488988621024688999999999999988765326777
Q gi|254780949|r 41 GYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120 (418)
Q Consensus 41 G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~ 120 (418)
T Consensus 3 ~~g~fd~-~H~GH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---r~~~~~~~~~~~------- 67 (147)
T cd02156 3 APGPFDP-LHLGHLRLIERADELARYGGDELIVIDDTDPPIKKLKG----KPLESLEE---RLEMLREALKDL------- 67 (147)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCC----CCCCCHHH---HHHHHHHHCCCE-------
T ss_conf 9860487-67899999999999999769928999789991453378----76768999---999999828881-------
Q ss_pred CCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 64023301675234313468887522344787534788887403568831578898989899999998542970201541
Q gi|254780949|r 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGS 200 (418)
Q Consensus 121 ~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGs 200 (418)
T Consensus 68 -~~~~~~~-------------------------------~~~~--~~-----~~~~~~~~~~~~~~~~--~~~~~~v~G~ 106 (147)
T cd02156 68 -GVVLDFD-------------------------------LERE--DG-----VPDYTFDFVKDLLALL--LPVDVVVVGK 106 (147)
T ss_pred -EEEEECC-------------------------------HHHH--HC-----CCCCHHHHHHHHHHHC--CCCCEEEECC
T ss_conf -4998577-------------------------------8886--33-----7666799999999844--6998899886
Q ss_pred HHHHHHHHH--HHHHHHCCCCCEEEEEECEEECCCCHHHHHH
Q ss_conf 258899888--9999731679717983110236871022354
Q gi|254780949|r 201 DQWGNIICG--IDLGERLKTPKLFALTSPLLTTASGTKMGKT 240 (418)
Q Consensus 201 DQwgNi~~G--~eLir~~~~~~~~glT~PLLt~~dG~KmgKS 240 (418)
T Consensus 107 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sSt~ 147 (147)
T cd02156 107 DQLFGFEREGALLLLELLKGPEVVVVPRGLL-DEGGGKSSTS 147 (147)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEECCHHC-CCCCEECCCC
T ss_conf 9878999986999999735998899571102-6787761789