HHsearch alignment for GI: 254780949 and conserved domain: pfam01479
>pfam01479 S4 S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Probab=98.04 E-value=6.9e-06 Score=59.13 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=40.9
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf 8899999849978868999998769879887980480002377771
Q gi|254780949|r 351 GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 351 ~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~ 396 (418)
T Consensus 2 RLd~~l~~~~~~~Sr~~a~~~I~~G~V~VNg~~v~~~~~~v~~gD~ 47 (48)
T pfam01479 2 RLDKVLARLGLASSRSEARQLIRHGHVRVNGKVVKDPSYRVKPGDV 47 (48)
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCC
T ss_conf 6679999867614899999999889779899995789868899299