HHsearch alignment for GI: 254780949 and conserved domain: pfam01479

>pfam01479 S4 S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Probab=98.04  E-value=6.9e-06  Score=59.13  Aligned_cols=46  Identities=22%  Similarity=0.483  Sum_probs=40.9

Q ss_pred             CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf             8899999849978868999998769879887980480002377771
Q gi|254780949|r  351 GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF  396 (418)
Q Consensus       351 ~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~  396 (418)
T Consensus         2 RLd~~l~~~~~~~Sr~~a~~~I~~G~V~VNg~~v~~~~~~v~~gD~   47 (48)
T pfam01479         2 RLDKVLARLGLASSRSEARQLIRHGHVRVNGKVVKDPSYRVKPGDV   47 (48)
T ss_pred             CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCC
T ss_conf             6679999867614899999999889779899995789868899299