HHsearch alignment for GI: 254780949 and conserved domain: pfam01921

>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=97.73  E-value=0.00027  Score=48.60  Aligned_cols=203  Identities=14%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             HCCCEEEEEEECCCCCCCCHHHH----HHHHHHHHHHHCCCEEEEEE--ECHHH-----------------------CCC
Q ss_conf             14981899984378762024348----99999999998598499998--26011-----------------------144
Q gi|254780949|r   32 SQGVVTAYIGYDLTASSLHAGHL----TQLMLLFWLQKTGHKPISLM--GGGTS-----------------------IIG   82 (418)
Q Consensus        32 ~~~~~~~y~G~DpT~~slH~G~l----~~~~~l~~~q~~Gh~~i~li--G~~T~-----------------------~IG   82 (418)
T Consensus        17 ~~~~~v~~tG~~PSG~-~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IP   95 (355)
T pfam01921        17 KKGEILVETGIGPSGL-PHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIP   95 (355)
T ss_pred             CCCCEEEECCCCCCCC-CEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECC
T ss_conf             7985899526689988-642156017999999999997498769999821565101378899998999873697521347


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             889886210246889999999999999887653267776402330167523431346888752234-4787534788887
Q gi|254780949|r   83 DPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFF-SVNRMLSFESVRS  161 (418)
Q Consensus        83 DPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~-~v~~mL~rd~v~~  161 (418)
T Consensus        96 dP~g~~-----------~Sya~h~~~~~~~~L~~~--gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e  162 (355)
T pfam01921        96 DPFGCH-----------ESYAEHFNAPFLEFLDRF--GIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEE  162 (355)
T ss_pred             CCCCCC-----------CCHHHHHHHHHHHHHHHC--CCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             988874-----------559999999999999983--9828998678855246559999999985899999999852866


Q ss_pred             H----------------C--------C-CCCCCCHH-----HHHHHHHHH-------HHHHHHHHHCCCCEECCCCHHHH
Q ss_conf             4----------------0--------3-56883157-----889898989-------99999985429702015412588
Q gi|254780949|r  162 R----------------L--------K-REQSLSFL-----EFNYMILQA-------YDFVELAKNYDCRLQMGGSDQWG  204 (418)
Q Consensus       162 R----------------l--------~-~~~~is~~-----EF~Y~llQa-------yD~~~L~~~~~~~iqiGGsDQwg  204 (418)
T Consensus       163 ~~~~y~Pf~piC~~cGrv~~t~v~~~d~~~~~v~Y~c~cG~~~~~~~~~g~~KL~WkvDW~mRW~~lgVdfEp~GKDh~~  242 (355)
T pfam01921       163 RQETYSPFLPICPKCGRVLTTPVVEYDAEGGTITYRCECGHEGEVDITGGNGKLQWKVDWAMRWAALGVDFEPFGKDHAA  242 (355)
T ss_pred             CCCCEEEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHEEEEECCEEECCCCCCCC
T ss_conf             68873689888588893725689999678987999869998899841157666787566333057856348625743246


Q ss_pred             ---HHHHHHHHHHH-CCCCCEEEEEECEEECCCCHHHHHHHHCCCCCC
Q ss_conf             ---99888999973-167971798311023687102235431012333
Q gi|254780949|r  205 ---NIICGIDLGER-LKTPKLFALTSPLLTTASGTKMGKTLSGAIWLN  248 (418)
Q Consensus       205 ---Ni~~G~eLir~-~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd  248 (418)
T Consensus       243 ~GGS~~~~~~I~~~i~g~~pP~~~~YE~~~~kgg~KmSsSkGn~is~~  290 (355)
T pfam01921       243 PGGSYDTSSRIAREILGGEPPEPFPYELILLKGGGKMSSSKGNGITIE  290 (355)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHH
T ss_conf             787622289999997099999988657899669971046889876999