HHsearch alignment for GI: 254780949 and conserved domain: pfam01921
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=97.73 E-value=0.00027 Score=48.60 Aligned_cols=203 Identities=14% Similarity=0.081 Sum_probs=120.5
Q ss_pred HCCCEEEEEEECCCCCCCCHHHH----HHHHHHHHHHHCCCEEEEEE--ECHHH-----------------------CCC
Q ss_conf 14981899984378762024348----99999999998598499998--26011-----------------------144
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHL----TQLMLLFWLQKTGHKPISLM--GGGTS-----------------------IIG 82 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l----~~~~~l~~~q~~Gh~~i~li--G~~T~-----------------------~IG 82 (418)
T Consensus 17 ~~~~~v~~tG~~PSG~-~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IP 95 (355)
T pfam01921 17 KKGEILVETGIGPSGL-PHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIP 95 (355)
T ss_pred CCCCEEEECCCCCCCC-CEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECC
T ss_conf 7985899526689988-642156017999999999997498769999821565101378899998999873697521347
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 889886210246889999999999999887653267776402330167523431346888752234-4787534788887
Q gi|254780949|r 83 DPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFF-SVNRMLSFESVRS 161 (418)
Q Consensus 83 DPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~-~v~~mL~rd~v~~ 161 (418)
T Consensus 96 dP~g~~-----------~Sya~h~~~~~~~~L~~~--gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e 162 (355)
T pfam01921 96 DPFGCH-----------ESYAEHFNAPFLEFLDRF--GIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEE 162 (355)
T ss_pred CCCCCC-----------CCHHHHHHHHHHHHHHHC--CCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 988874-----------559999999999999983--9828998678855246559999999985899999999852866
Q ss_pred H----------------C--------C-CCCCCCHH-----HHHHHHHHH-------HHHHHHHHHCCCCEECCCCHHHH
Q ss_conf 4----------------0--------3-56883157-----889898989-------99999985429702015412588
Q gi|254780949|r 162 R----------------L--------K-REQSLSFL-----EFNYMILQA-------YDFVELAKNYDCRLQMGGSDQWG 204 (418)
Q Consensus 162 R----------------l--------~-~~~~is~~-----EF~Y~llQa-------yD~~~L~~~~~~~iqiGGsDQwg 204 (418)
T Consensus 163 ~~~~y~Pf~piC~~cGrv~~t~v~~~d~~~~~v~Y~c~cG~~~~~~~~~g~~KL~WkvDW~mRW~~lgVdfEp~GKDh~~ 242 (355)
T pfam01921 163 RQETYSPFLPICPKCGRVLTTPVVEYDAEGGTITYRCECGHEGEVDITGGNGKLQWKVDWAMRWAALGVDFEPFGKDHAA 242 (355)
T ss_pred CCCCEEEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHEEEEECCEEECCCCCCCC
T ss_conf 68873689888588893725689999678987999869998899841157666787566333057856348625743246
Q ss_pred ---HHHHHHHHHHH-CCCCCEEEEEECEEECCCCHHHHHHHHCCCCCC
Q ss_conf ---99888999973-167971798311023687102235431012333
Q gi|254780949|r 205 ---NIICGIDLGER-LKTPKLFALTSPLLTTASGTKMGKTLSGAIWLN 248 (418)
Q Consensus 205 ---Ni~~G~eLir~-~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd 248 (418)
T Consensus 243 ~GGS~~~~~~I~~~i~g~~pP~~~~YE~~~~kgg~KmSsSkGn~is~~ 290 (355)
T pfam01921 243 PGGSYDTSSRIAREILGGEPPEPFPYELILLKGGGKMSSSKGNGITIE 290 (355)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHH
T ss_conf 787622289999997099999988657899669971046889876999