HHsearch results for GI: 254780949 and protein with PDBid: 1y42_X
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=0 Score=875.93 Aligned_cols=329 Identities=32% Similarity=0.559 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHCCCHHHCCC-HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCC
Q ss_conf 136799999996892002299-8999998514981899984378762024348999999999985984999982601114
Q gi|254780949|r 3 AFKSDFLSILSERGFIHQISN-PRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSII 81 (418)
Q Consensus 3 ~~~~~~~~~L~~Rg~i~~~~~-~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~I 81 (418)
..+++++++|.|||+|+|+|+ +++|+++++++++++||||||||+|||||||||+|+|+|||++||+||+||||+||+|
T Consensus 31 ~~~~~~l~~l~~Rg~i~~~~~~~e~l~~ll~~~~~~~Y~G~DPTa~SLHlGhLv~l~~L~~~Q~~Gh~~i~LiGg~Ta~I 110 (392)
T 1y42_X 31 GKKQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKI 110 (392)
T ss_dssp TSSCCHHHHHHHHTCCSCEESCHHHHHHHHHHCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTCEEEEEECTTTTTT
T ss_pred CCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEE
T ss_conf 35556999999768645308819999999708996699823689864208779999999999987994799976753670
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----------CCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 488988621024688999999999999988765326-----------777640233016752343134688875223447
Q gi|254780949|r 82 GDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYG-----------TGKTDALMLNNETWLCSIKYIDLLREIGSFFSV 150 (418)
Q Consensus 82 GDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~-----------~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v 150 (418)
||||||+++|++++.+++.+|+++|++|+++++++. +....+.+|||++|++++++++|||++|++|+|
T Consensus 111 GDPsgk~~~R~~l~~e~i~~N~~~i~~qi~~~~~~~~~~~~~~~~~~~~~~~~~ivnN~~W~~~l~~~~flr~~g~~~~v 190 (392)
T 1y42_X 111 GDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRI 190 (392)
T ss_dssp CCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHCCCCH
T ss_conf 49998754566779899998899999999999702221000011345555530454559988538799999997331119
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCC-------------
Q ss_conf 8753478888740356883157889898989999999854297020154125889988899997316-------------
Q gi|254780949|r 151 NRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK------------- 217 (418)
Q Consensus 151 ~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~------------- 217 (418)
|+||+||+|++|+++++||||+||+||+||||||+||+++|+|++|+|||||||||++|||||||.+
T Consensus 191 ~~ml~rd~vk~Rl~~~~~is~~Ef~YpllQayDf~~L~~~~~~~lqiGGsDQ~gNi~~G~dlir~~~~~~~~~~~~~~~~ 270 (392)
T 1y42_X 191 GPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVT 270 (392)
T ss_dssp HHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
T ss_conf 99988888888861266641443446877434499999984887057424304767768889998433463200101233
Q ss_pred ----CCCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH--H
Q ss_conf ----7971798311023687102235431012333457997999998862078889879975068885675554333--2
Q gi|254780949|r 218 ----TPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL--Q 291 (418)
Q Consensus 218 ----~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~--~ 291 (418)
.+++||+|+||||++||+|||||+|||||||+++||||+|||||||+||++|++||++||++|++||++|++. .
T Consensus 271 ~~~~~~~~~glT~PLLt~~dG~KmgKS~gnaIwLd~~~tSpye~yq~~~n~~D~~v~~yLklfT~l~~eeI~~l~~~~~~ 350 (392)
T 1y42_X 271 PKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHIK 350 (392)
T ss_dssp CCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 32256640575215544798304665058975046776677899999834889899999999745999999999999764
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
Q ss_conf 1022026889899999973000004679998643102576
Q gi|254780949|r 292 GKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI 331 (418)
Q Consensus 292 ~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~~~ 331 (418)
+++||+||+.||+|||++|||+++|++|+++++.+|+++.
T Consensus 351 ~~~~r~aKk~LA~evt~lvHG~~~a~~A~~~~~~lF~g~~ 390 (392)
T 1y42_X 351 DPSKRVAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQM 390 (392)
T ss_dssp CGGGCHHHHHHHHHHHHHHHCHHHHHHHHHHHTSSCCC--
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9987999999999999996799999999999998718988