HHsearch results for GI: 254780949 and protein with PDBid: 1yi8_B
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.97 E-value=1.8e-29 Score=213.27 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=182.9
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHH
Q ss_conf 49818999843787620243489999999-999859849999826011144889886210246889999999999-9998
Q gi|254780949|r 33 QGVVTAYIGYDLTASSLHAGHLTQLMLLF-WLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKI-KGIF 110 (418)
Q Consensus 33 ~~~~~~y~G~DpT~~slH~G~l~~~~~l~-~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~-~~q~ 110 (418)
..+.++|.||.|||. +||||+++.+... ++|+ |++++++|+|++++++++ .+.+++.+++..+ ...+
T Consensus 20 ~~~~rv~tG~~PSG~-~HlG~~l~~~~~~~~lQ~-~~~~~i~IaD~ha~t~~~---------~~~~~~r~~~~~~~~~~l 88 (351)
T 1yi8_B 20 PARPRVLTGDRPTGA-LHLGHLAGSLQNRVRLQD-EAELFVLLADVQALTDHF---------DRPEQVRENVLAVALDYL 88 (351)
T ss_dssp -CCSEEEEEECCSSC-CBHHHHHHTHHHHHHHTS-SSEEEEEECHHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHCCCC---------CCHHHHHHHHHHHHHHHH
T ss_conf 999989966388972-626878999999999875-798899981536761699---------999999999999999999
Q ss_pred HHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 876532677764023301675234313468887522344787534788887---40356883157889898989999999
Q gi|254780949|r 111 SSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRS---RLKREQSLSFLEFNYMILQAYDFVEL 187 (418)
Q Consensus 111 ~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~---Rl~~~~~is~~EF~Y~llQayD~~~L 187 (418)
..-+ ++.++.++.+++|.....+.-. +....++++|.+...++. |......++..+|+||+|||+|.+.+
T Consensus 89 A~G~----Dp~k~~i~~qS~~~~~~el~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDi~~~ 161 (351)
T 1yi8_B 89 AAGL----DPQKTTCVVQSAVPELAELTVY---FLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAF 161 (351)
T ss_dssp HHTC----CTTTEEEEEGGGCTHHHHHHHH---HHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHH
T ss_pred HCCC----CCCCCEEEECCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 8069----9310437735511357889999---98764452588878999863023666677734455508765146540
Q ss_pred HHHCCCCEECCCCHHHHHHHHHHHHHHHCCC--------CCEEEEEECEEECCCCH-HHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8542970201541258899888999973167--------97179831102368710-22354310123334579979999
Q gi|254780949|r 188 AKNYDCRLQMGGSDQWGNIICGIDLGERLKT--------PKLFALTSPLLTTASGT-KMGKTLSGAIWLNKEMTSPYNFW 258 (418)
Q Consensus 188 ~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~--------~~~~glT~PLLt~~dG~-KmgKS~~naIwLd~~~tSPy~fy 258 (418)
+.++..||.||..++...||+.++++. ++......|.+.+.+|. |||||.+|+|.|+ +||.+..
T Consensus 162 ----~~divpvG~DQ~~h~~LaRdia~~~n~~~~~~~~~P~~~~~~~~~l~gL~g~~KmSkS~~~~I~l~---D~~~~I~ 234 (351)
T 1yi8_B 162 ----GATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG---DSADEVA 234 (351)
T ss_dssp ----TCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT---CCHHHHH
T ss_pred ----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC---CCHHHHH
T ss_conf ----554467762379999999999999540047766786677641345657775011036853346778---9999999
Q ss_pred HHHHHH-CHH--------------HHHHHHHHHCCCCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 988620-788--------------89879975068885675554333---210220268898999999730
Q gi|254780949|r 259 QYWRNI-DDA--------------DVVSFAKRLTTLPMSEIDRMAKL---QGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 259 Qf~~n~-~D~--------------dV~kyLklfT~l~l~EI~~l~~~---~~~~pr~aKk~LA~EiT~lvH 311 (418)
.++++. .|. -+..++..|... ..+++++... .+-.+.++|+.||+.+.+.+-
T Consensus 235 kKI~ka~td~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~el~~~~~~g~~~~~~~K~~lae~l~~~l~ 304 (351)
T 1yi8_B 235 RKVMGMYTDPGHLRASDPGRVEGNPVFTFLDAFDPD-PARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLA 304 (351)
T ss_dssp HHHHTCCCCTTCCSTTSCCCCTTCTTHHHHHHHCSC-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 998712459998721014776510699998875355-2079999999985898989999999999999858