HHsearch results for GI: 254780949 and protein with PDBid: 2cyc_A
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=3.2e-44 Score=310.49 Aligned_cols=285 Identities=18% Similarity=0.214 Sum_probs=220.8
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCC
Q ss_conf 99968920022998999998514-98189998437876202434-89999999999859849999826011144889886
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRD 88 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~-l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~ 88 (418)
+|..|+..+++..+|++.+++.+ +++++|+||+|||+ +|||| +++++.+++||++|+.++++|||+|+++|||+|++
T Consensus 8 ~l~~~~~~~e~~~~e~l~~~l~~~~~~~iy~G~~PTG~-lHLGh~l~~~~~~~~lq~~g~~~~i~IaD~~a~~~~~~~~~ 86 (375)
T 2cyc_A 8 NLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGD 86 (375)
T ss_dssp HHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSC-CBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGC
T ss_pred HHHHCCCCHHCCCHHHHHHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCC
T ss_conf 99973782423899999999857999679973488887-63075899999999999779977999658030205885456
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHHH-HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 210246889999999-999999887-653267776402330167523431346888752234478753478888740356
Q gi|254780949|r 89 ESRRMMRSQEIQENI-EKIKGIFSS-FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE 166 (418)
Q Consensus 89 ~~R~~l~~~~i~~n~-~~~~~q~~~-~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~ 166 (418)
.++ +++.. ..+...+.. ++-++-++.++.|+.|++|.....+..++..+++++++++|.+..+++.|...
T Consensus 87 ~e~-------~~~~~~~~~~~~~~~~~~a~G~dp~k~~i~~qS~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 158 (375)
T 2cyc_A 87 LEV-------IQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMG- 158 (375)
T ss_dssp HHH-------HHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCC-
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-
T ss_conf 889-------999999999999999999939890044899625434313699999997231059999862466633126-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCC---------EEEEEECEEECCC----
Q ss_conf 883157889898989999999854297020154125889988899997316797---------1798311023687----
Q gi|254780949|r 167 QSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPK---------LFALTSPLLTTAS---- 233 (418)
Q Consensus 167 ~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~---------~~glT~PLLt~~d---- 233 (418)
.++++.+|+||+|||+|++++ +++++.||.|||.|+..+||+++|++... ...+..|.+.+..
T Consensus 159 ~~~~~g~~~YP~lQaaDil~~----~~~~vpvG~DQ~~~~~l~rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gL~~~~~ 234 (375)
T 2cyc_A 159 EAIDFAKLIYPMMQVADIFYQ----GVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPK 234 (375)
T ss_dssp TTCBTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSS
T ss_pred CCCCCCEECCCHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 675401001312656679886----3022555520258999999999983887665556655312211445557666432
Q ss_pred --------------CHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHH-------CHHHHHHHHHHH---------------
Q ss_conf --------------102235431-0123334579979999988620-------788898799750---------------
Q gi|254780949|r 234 --------------GTKMGKTLS-GAIWLNKEMTSPYNFWQYWRNI-------DDADVVSFAKRL--------------- 276 (418)
Q Consensus 234 --------------G~KmgKS~~-naIwLd~~~tSPy~fyQf~~n~-------~D~dV~kyLklf--------------- 276 (418)
|.|||||.+ ++|+|. .+|.+...++++. .+..+..+....
T Consensus 235 ~~~~~~~~~~~~~~~~KMSkS~~~s~I~L~---Dtpe~I~kKI~ka~td~~~~~~n~~~~~~~~~~~~~~~~~~~i~~~~ 311 (375)
T 2cyc_A 235 WPIESEEEFKEIKAQMKMSKSKPYSAVFIH---DSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPA 311 (375)
T ss_dssp SSCCSHHHHHHHHHHHBGGGSCGGGSCBTT---CCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTTTSSSSCCEEECCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCCCCEECHH
T ss_conf 333222234566677767668988867611---89999999987520798766678751223203025755553120287
Q ss_pred ---CCCCHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHH
Q ss_conf ---688856755543332---10220268898999999730
Q gi|254780949|r 277 ---TTLPMSEIDRMAKLQ---GKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 277 ---T~l~l~EI~~l~~~~---~~~pr~aKk~LA~EiT~lvH 311 (418)
.....++.+++++.- +-++.++|+.||+.|+.++-
T Consensus 312 ~~~~~~~~~~~eel~~~~~~G~l~~~dlK~~lae~i~~~l~ 352 (375)
T 2cyc_A 312 KFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352 (375)
T ss_dssp GGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64376666769999999865998999999999999999869