HHsearch results for GI: 254780949 and protein with PDBid: 2cyc_A

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00  E-value=3.2e-44  Score=310.49  Aligned_cols=285  Identities=18%  Similarity=0.214  Sum_probs=220.8

Q ss_pred             HHHHCCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCC
Q ss_conf             99968920022998999998514-98189998437876202434-89999999999859849999826011144889886
Q gi|254780949|r   11 ILSERGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRD   88 (418)
Q Consensus        11 ~L~~Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~-l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~   88 (418)
                      +|..|+..+++..+|++.+++.+ +++++|+||+|||+ +|||| +++++.+++||++|+.++++|||+|+++|||+|++
T Consensus         8 ~l~~~~~~~e~~~~e~l~~~l~~~~~~~iy~G~~PTG~-lHLGh~l~~~~~~~~lq~~g~~~~i~IaD~~a~~~~~~~~~   86 (375)
T 2cyc_A            8 NLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGD   86 (375)
T ss_dssp             HHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSC-CBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGC
T ss_pred             HHHHCCCCHHCCCHHHHHHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCC
T ss_conf             99973782423899999999857999679973488887-63075899999999999779977999658030205885456


Q ss_pred             CCCCCCCHHHHHHHH-HHHHHHHHH-HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             210246889999999-999999887-653267776402330167523431346888752234478753478888740356
Q gi|254780949|r   89 ESRRMMRSQEIQENI-EKIKGIFSS-FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE  166 (418)
Q Consensus        89 ~~R~~l~~~~i~~n~-~~~~~q~~~-~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~  166 (418)
                      .++       +++.. ..+...+.. ++-++-++.++.|+.|++|.....+..++..+++++++++|.+..+++.|... 
T Consensus        87 ~e~-------~~~~~~~~~~~~~~~~~~a~G~dp~k~~i~~qS~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  158 (375)
T 2cyc_A           87 LEV-------IQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMG-  158 (375)
T ss_dssp             HHH-------HHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCC-
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-
T ss_conf             889-------999999999999999999939890044899625434313699999997231059999862466633126-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCC---------EEEEEECEEECCC----
Q ss_conf             883157889898989999999854297020154125889988899997316797---------1798311023687----
Q gi|254780949|r  167 QSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPK---------LFALTSPLLTTAS----  233 (418)
Q Consensus       167 ~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~---------~~glT~PLLt~~d----  233 (418)
                      .++++.+|+||+|||+|++++    +++++.||.|||.|+..+||+++|++...         ...+..|.+.+..    
T Consensus       159 ~~~~~g~~~YP~lQaaDil~~----~~~~vpvG~DQ~~~~~l~rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gL~~~~~  234 (375)
T 2cyc_A          159 EAIDFAKLIYPMMQVADIFYQ----GVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPK  234 (375)
T ss_dssp             TTCBTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSS
T ss_pred             CCCCCCEECCCHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             675401001312656679886----3022555520258999999999983887665556655312211445557666432


Q ss_pred             --------------CHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHH-------CHHHHHHHHHHH---------------
Q ss_conf             --------------102235431-0123334579979999988620-------788898799750---------------
Q gi|254780949|r  234 --------------GTKMGKTLS-GAIWLNKEMTSPYNFWQYWRNI-------DDADVVSFAKRL---------------  276 (418)
Q Consensus       234 --------------G~KmgKS~~-naIwLd~~~tSPy~fyQf~~n~-------~D~dV~kyLklf---------------  276 (418)
                                    |.|||||.+ ++|+|.   .+|.+...++++.       .+..+..+....               
T Consensus       235 ~~~~~~~~~~~~~~~~KMSkS~~~s~I~L~---Dtpe~I~kKI~ka~td~~~~~~n~~~~~~~~~~~~~~~~~~~i~~~~  311 (375)
T 2cyc_A          235 WPIESEEEFKEIKAQMKMSKSKPYSAVFIH---DSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPA  311 (375)
T ss_dssp             SSCCSHHHHHHHHHHHBGGGSCGGGSCBTT---CCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTTTSSSSCCEEECCCG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCCCCEECHH
T ss_conf             333222234566677767668988867611---89999999987520798766678751223203025755553120287


Q ss_pred             ---CCCCHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHH
Q ss_conf             ---688856755543332---10220268898999999730
Q gi|254780949|r  277 ---TTLPMSEIDRMAKLQ---GKEINEAKKIIATEITTMVH  311 (418)
Q Consensus       277 ---T~l~l~EI~~l~~~~---~~~pr~aKk~LA~EiT~lvH  311 (418)
                         .....++.+++++.-   +-++.++|+.||+.|+.++-
T Consensus       312 ~~~~~~~~~~~eel~~~~~~G~l~~~dlK~~lae~i~~~l~  352 (375)
T 2cyc_A          312 KFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE  352 (375)
T ss_dssp             GGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTH
T ss_pred             HHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             64376666769999999865998999999999999999869