HHsearch results for GI: 254780949 and protein with PDBid: 2j5b_A
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYB; 2.2A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=2.4e-42 Score=298.19 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=224.5
Q ss_pred CCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCC
Q ss_conf 8920022998999998514-9818999843787620243489-9999999998598499998260111448898862102
Q gi|254780949|r 15 RGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLT-QLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRR 92 (418)
Q Consensus 15 Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~-~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~ 92 (418)
.|.+++++.+++|.+++.+ +++++|+|||||| +|||||++ +++.+++||++||.++++|||+||++|||++.+.
T Consensus 19 ~~~~~e~~~~d~l~~~l~~~~~~~vy~G~~PTG-~lHLG~~l~~i~~~~~~q~~g~~~~iliaD~~a~~~~~~~~~~--- 94 (348)
T 2j5b_A 19 LSIAEECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDI--- 94 (348)
T ss_dssp HTTCSEESCHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCH---
T ss_pred HCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCH---
T ss_conf 654364089999999995799977997558887-5551768999999999986699769998570998688757659---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 468899999999999998876532677764023301-6752343134688875223447875347888874035688315
Q gi|254780949|r 93 MMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNN-ETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSF 171 (418)
Q Consensus 93 ~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N-~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~ 171 (418)
+++..|...+...+..+ +-++.++.++.+ ..|.....+++++..+++++++++|.+...++.|-. +.++++
T Consensus 95 ----~~i~~~~~~~~~~~~A~---G~dp~k~~~~~qs~~~~~~~~~~~l~~~ls~~~~~~~l~~~~~~~~~~~-~~~~~~ 166 (348)
T 2j5b_A 95 ----NKIRELGRYFIEVFKAC---GINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNE-SDCLKA 166 (348)
T ss_dssp ----HHHHHHHHHHHHHHHHT---TCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred ----HHHHHHHHHHHHHHHHC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCC
T ss_conf ----99999999999999980---8995530899647876520248999999844326432430588986531-267763
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCC--CH-HHHHHHHCCCCCC
Q ss_conf 78898989899999998542970201541258899888999973167971798311023687--10-2235431012333
Q gi|254780949|r 172 LEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTAS--GT-KMGKTLSGAIWLN 248 (418)
Q Consensus 172 ~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~d--G~-KmgKS~~naIwLd 248 (418)
.||+||+|||||++++... +++++.+|.||+.+...++++..+.+.++...+++|.+...+ |. ||++|.+|+|.|+
T Consensus 167 ~~~~YPllqAaDil~l~~~-~~d~~~~g~dqr~~~~~~r~~~~~~~~~~~~~~~~~~~~~L~~~~~kmsss~~~~~I~l~ 245 (348)
T 2j5b_A 167 SQIFYPCMQAADVFELVPE-GIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp --CCHHHHHHHHHHHSSTT-CCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred CEECCHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 2003315666677740344-455420178779999999864021056753011022223568743344567887555510
Q ss_pred CCCCCHHHHHHHHHHHC--------------HHHHHHHHHHHCCCCH--HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45799799999886207--------------8889879975068885--675554333-210220268898999999730
Q gi|254780949|r 249 KEMTSPYNFWQYWRNID--------------DADVVSFAKRLTTLPM--SEIDRMAKL-QGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 249 ~~~tSPy~fyQf~~n~~--------------D~dV~kyLklfT~l~l--~EI~~l~~~-~~~~pr~aKk~LA~EiT~lvH 311 (418)
.+|-+.+.++++.- .-++..|+..+.+.+. ++++++++. .+-+|.++|+.||+.|++++.
T Consensus 246 ---D~~~~i~~KI~ka~td~~~~~n~~~~~~~~~~~~~~~~~nl~~~~~~~~eel~~~~~~~~~~dlK~~la~~i~~~l~ 322 (348)
T 2j5b_A 246 ---DTEQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTIID 322 (348)
T ss_dssp ---CCHHHHHHHHHHSCCCSSSTTCHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---58678998775033788777788655310021300314531452176799999997799989999999999999889
Q ss_pred H
Q ss_conf 0
Q gi|254780949|r 312 G 312 (418)
Q Consensus 312 G 312 (418)
.
T Consensus 323 p 323 (348)
T 2j5b_A 323 L 323 (348)
T ss_dssp H
T ss_pred H
T ss_conf 9