HHsearch results for GI: 254780949 and protein with PDBid: 2yy5_A

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=99.93  E-value=2.7e-24  Score=179.15  Aligned_cols=250  Identities=16%  Similarity=0.191  Sum_probs=161.8

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81899984378762024348999999-99998598499998260111448898862102468899999999999998876
Q gi|254780949|r   35 VVTAYIGYDLTASSLHAGHLTQLMLL-FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSF  113 (418)
Q Consensus        35 ~~~~y~G~DpT~~slH~G~l~~~~~l-~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~  113 (418)
                      ..+||.||.|||. +||||+++++.. ..+|+ |++++++|+|+++++.|+          +.+.+..++..   .+..+
T Consensus         4 ~~rv~tG~~PSG~-~HLGh~i~~i~~~~~lQ~-~~~~~i~IAD~ha~~~~~----------~~~~~~~~~~~---~~~~~   68 (348)
T 2yy5_A            4 MKRALTGIQASGK-QHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDF----------QPQALKQNNFD---LVRTL   68 (348)
T ss_dssp             CCEEEEEECCCTT-CBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCC----------CHHHHHHHHHH---HHHHH
T ss_pred             CCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHCCC----------CHHHHHHHHHH---HHHHH
T ss_conf             5604668378970-567769999999999966-698899973187761699----------89999999999---99999


Q ss_pred             HHCCCCCCCCEEEEHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             53267776402330167523431-346888752234478753478888740-------3568831578898989899999
Q gi|254780949|r  114 IKYGTGKTDALMLNNETWLCSIK-YIDLLREIGSFFSVNRMLSFESVRSRL-------KREQSLSFLEFNYMILQAYDFV  185 (418)
Q Consensus       114 ~~~~~~~~~~~i~~N~~W~~~~~-~~~~lr~~g~~~~v~~mL~rd~v~~Rl-------~~~~~is~~EF~Y~llQayD~~  185 (418)
                      +..+-.+....+...++ ..... +...+.   ...++++|.+.-.++.+.       .....++...|+||+|||.|.+
T Consensus        69 la~g~dp~~~~~~~qs~-~~~~~el~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDil  144 (348)
T 2yy5_A           69 LAVGLDPQKACLFLQSD-LLEHSMMGYLMM---VQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDIL  144 (348)
T ss_dssp             HHTTCCTTTEEEEEGGG-CHHHHHHHHHHH---HHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEEEECCC-CCCHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHCCHH
T ss_conf             98178855527973033-500688999983---32788999998876666643002445555643241048167520226


Q ss_pred             HHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCC-------CCEEE------EEECEEEC-CCCHHHHHHHHCCCCCCCCC
Q ss_conf             998542970201541258899888999973167-------97179------83110236-87102235431012333457
Q gi|254780949|r  186 ELAKNYDCRLQMGGSDQWGNIICGIDLGERLKT-------PKLFA------LTSPLLTT-ASGTKMGKTLSGAIWLNKEM  251 (418)
Q Consensus       186 ~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~-------~~~~g------lT~PLLt~-~dG~KmgKS~~naIwLd~~~  251 (418)
                      ++    ++++..||.||.-++...||+.+|++.       .+...      ...|++.+ .+++|++++.+++|.|+   
T Consensus       145 ~~----~~~~vp~G~DQ~~~~~ltRdia~kfn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kS~~~~~s~I~l~---  217 (348)
T 2yy5_A          145 LY----QPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD---  217 (348)
T ss_dssp             TT----CCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT---
T ss_pred             HH----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---
T ss_conf             41----78878787218999999999987502344544567732123320013567688767776678988668843---


Q ss_pred             CCHHHHHHHHHHH-CH---------------HHHHHHHHHHCCCCHHHH--HHH----HHH-HHCCCCHHHHHHHHHHHH
Q ss_conf             9979999988620-78---------------889879975068885675--554----333-210220268898999999
Q gi|254780949|r  252 TSPYNFWQYWRNI-DD---------------ADVVSFAKRLTTLPMSEI--DRM----AKL-QGKEINEAKKIIATEITT  308 (418)
Q Consensus       252 tSPy~fyQf~~n~-~D---------------~dV~kyLklfT~l~l~EI--~~l----~~~-~~~~pr~aKk~LA~EiT~  308 (418)
                      ++|-+...+.++. .|               ..+..++.+|...+..+-  ++.    +.. .+....++|+.||+.+.+
T Consensus       218 D~~~~I~kKI~ka~td~~~~~~~~~~~~p~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdlK~~lae~l~~  297 (348)
T 2yy5_A          218 DPKEVVVKKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVN  297 (348)
T ss_dssp             CCHHHHHHHHHTCCCCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             87888999887356799888424666788657489899998366034457777656899887677799999999999999


Q ss_pred             HH
Q ss_conf             73
Q gi|254780949|r  309 MV  310 (418)
Q Consensus       309 lv  310 (418)
                      ++
T Consensus       298 ~l  299 (348)
T 2yy5_A          298 LL  299 (348)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             98