HHsearch results for GI: 254780949 and protein with PDBid: 3foc_A

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00  E-value=1.4e-30  Score=220.58  Aligned_cols=281  Identities=15%  Similarity=0.169  Sum_probs=218.9

Q ss_pred             HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf             996892002299899-9998514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r   12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE   89 (418)
Q Consensus        12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~   89 (418)
                      |..||+|-.--+-+. |+..-++++..+|.||+||+.++||||+++++.+++||+. |..+++.|+|.++.+.++     
T Consensus        67 ~~rRgi~f~hrd~d~il~~~~~g~pf~v~tG~~PsSG~~HLGh~~~~~~~~~lQd~~~~~~~i~iaD~ea~~~~~-----  141 (451)
T 3foc_A           67 MLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNR-----  141 (451)
T ss_dssp             HHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCT-----
T ss_pred             HHCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCC-----
T ss_conf             011556530368999999997599849997988998975399999999999998757997899972478840488-----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r   90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL  169 (418)
Q Consensus        90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i  169 (418)
                         -++.++++.++..+   +..++..+-++.+..|..+++|..-..+.+++..+++..++++|.+.-.|      ....
T Consensus       142 ---~~~~e~~~~~~~e~---~~~~iA~G~Dp~kt~if~qS~~~~v~~~~~l~~~l~~~~t~~el~~~~gf------~~~~  209 (451)
T 3foc_A          142 ---SLSYAEVDSYTREN---IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF------SNDA  209 (451)
T ss_dssp             ---TCCHHHHHHHHHHH---HHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC------CSSS
T ss_pred             ---CCCHHHHHHHHHHH---HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC------CCCC
T ss_conf             ---99999999999999---99999957790233999916003137899999999570564467662056------8777


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------CCCC
Q ss_conf             157889898989999999854-------------------------------------------------------2970
Q gi|254780949|r  170 SFLEFNYMILQAYDFVELAKN-------------------------------------------------------YDCR  194 (418)
Q Consensus       170 s~~EF~Y~llQayD~~~L~~~-------------------------------------------------------~~~~  194 (418)
                      ++..|.||++||.|.++-...                                                       ...+
T Consensus       210 nig~~~yP~~Qaadil~~~~~~~~~~~~~vpv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (451)
T 3foc_A          210 NVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMC  289 (451)
T ss_dssp             CHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEE
T ss_pred             CCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             56411450765423432023345766434442125567888876654311332100102467766665300122101122


Q ss_pred             EECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHHHHHC-CCCCCCCCCCHHHHHHHHHHH-------
Q ss_conf             20154125889988899997316797179831102368710--22354310-123334579979999988620-------
Q gi|254780949|r  195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGKTLSG-AIWLNKEMTSPYNFWQYWRNI-------  264 (418)
Q Consensus       195 iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgKS~~n-aIwLd~~~tSPy~fyQf~~n~-------  264 (418)
                      +..+|.||.-++...||+.+|++..+...++.|.+++.+|.  |||||..| +|+|+   .||-+.+.+.++.       
T Consensus       290 lvp~G~DQ~~~~~ltRdia~r~~~~~p~~~~~~~lpgL~G~~~KMSkS~pnS~I~L~---D~pe~I~kKI~k~A~tgg~~  366 (451)
T 3foc_A          290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT---DTPAQIKNKINRYAFSGGRD  366 (451)
T ss_dssp             EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT---CCHHHHHHHHHHHSCCCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCC
T ss_conf             013645789999999999998389988025037766778987765678998633405---89899999886440389988


Q ss_pred             -----------CH-HHHHHHHHHHCCCCHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -----------78-8898799750688856755543332--1-022026889899999973000
Q gi|254780949|r  265 -----------DD-ADVVSFAKRLTTLPMSEIDRMAKLQ--G-KEINEAKKIIATEITTMVHGR  313 (418)
Q Consensus       265 -----------~D-~dV~kyLklfT~l~l~EI~~l~~~~--~-~~pr~aKk~LA~EiT~lvHGe  313 (418)
                                 +| ..+..|+..|.. +-++++++.+.-  + -.+.+.|+.||+.+++++..-
T Consensus       367 t~ee~r~~gg~p~~~~~~~~l~~f~~-dD~~leei~~~y~~G~l~~ge~K~~lae~l~~~L~~~  429 (451)
T 3foc_A          367 TEEEHRAFGADLSVDVSVRYLEVFMK-DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEH  429 (451)
T ss_dssp             SHHHHHTTCCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             65300104999663069999999849-9358999999986389898999999999999998999