Query gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs 200 out of 2224
Neff 6.0
Searched_HMMs 23785
Date Tue May 31 22:59:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780949.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ts1_A Tyrosyl-tRNA synthetase 100.0 0 0 1085.1 31.8 409 7-417 2-419 (419)
2 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 0 0 1073.6 33.8 406 4-416 1-419 (420)
3 2jan_A Tyrosyl-tRNA synthetase 100.0 0 0 1059.4 37.5 413 4-418 1-424 (432)
4 1y42_X Tyrosyl-tRNA synthetase 100.0 0 0 875.9 27.7 329 3-331 31-390 (392)
5 2yxn_A Tyrosyl-tRNA synthetase 100.0 0 0 823.9 29.1 317 5-321 3-322 (322)
6 2pid_A Tyrosyl-tRNA synthetase 100.0 0 0 810.0 31.0 329 4-332 7-352 (356)
7 1h3f_A Tyrosyl-tRNA synthetase 100.0 0 0 790.9 37.4 388 11-417 13-431 (432)
8 2zp1_A Tyrosyl-tRNA synthetase 100.0 0 0 390.5 24.6 272 11-312 5-301 (314)
9 2cyb_A Tyrosyl-tRNA synthetase 100.0 0 0 380.7 25.4 280 11-313 8-315 (323)
10 1n3l_A Tyrosyl-tRNA synthetase 100.0 0 0 377.0 27.5 284 11-313 12-324 (372)
11 2dlc_X Tyrosyl-tRNA synthetase 100.0 0 0 347.9 25.4 283 11-312 14-336 (394)
12 3hv0_A Tryptophanyl-tRNA synth 100.0 0 0 344.8 19.0 284 12-317 50-366 (393)
13 2cya_A Tyrosyl-tRNA synthetase 100.0 0 0 336.4 20.7 284 11-313 11-341 (364)
14 1r6u_A Tryptophanyl-tRNA synth 100.0 2.8E-45 0 316.9 24.0 307 12-340 84-427 (437)
15 1r6t_A Tryptophanyl-tRNA synth 100.0 1.4E-45 0 319.0 22.1 285 12-315 131-447 (477)
16 3i05_A Tryptophanyl-tRNA synth 100.0 0 0 321.7 19.9 281 11-315 53-367 (395)
17 2cyc_A Tyrosyl-tRNA synthetase 100.0 3.2E-44 0 310.5 24.5 285 11-311 8-352 (375)
18 2j5b_A Tyrosyl-tRNA synthetase 100.0 2.4E-42 0 298.2 22.6 282 15-312 19-323 (348)
19 2ip1_A Tryptophanyl-tRNA synth 100.0 5.3E-42 0 295.9 20.2 297 12-330 78-410 (432)
20 3hzr_A Tryptophanyl-tRNA synth 100.0 1.8E-41 1.4E-45 292.4 22.0 284 12-317 58-369 (386)
21 2g36_A Tryptophanyl-tRNA synth 100.0 1.7E-40 7E-45 286.0 19.5 258 34-312 11-295 (340)
22 3jxe_A Tryptophanyl-tRNA synth 100.0 5.1E-37 2.1E-41 263.0 21.3 280 12-315 49-352 (392)
23 2el7_A Tryptophanyl-tRNA synth 100.0 6.8E-35 2.8E-39 249.0 17.0 252 36-311 2-283 (337)
24 3m5w_A Tryptophanyl-tRNA synth 100.0 1.1E-31 4.7E-36 227.8 18.2 251 34-311 2-278 (322)
25 3foc_A Tryptophanyl-tRNA synth 100.0 1.4E-30 5.8E-35 220.6 23.1 281 12-313 67-429 (451)
26 1yi8_B Tryptophanyl-tRNA synth 100.0 1.8E-29 7.5E-34 213.3 21.0 253 33-311 20-304 (351)
27 2yy5_A Tryptophanyl-tRNA synth 99.9 2.7E-24 1.1E-28 179.1 17.1 250 35-310 4-299 (348)
28 1i6k_A TRPRS, tryptophanyl-tRN 99.9 4.7E-24 2E-28 177.5 16.6 253 36-312 2-282 (328)
29 3n9i_A Tryptophanyl-tRNA synth 99.9 5.8E-23 2.4E-27 170.3 17.5 261 27-311 7-298 (346)
30 2csx_A Methionyl-tRNA syntheta 98.6 5.3E-07 2.2E-11 65.0 10.6 67 44-113 16-87 (497)
31 1irx_A Lysyl-tRNA synthetase; 98.4 1.3E-05 5.3E-10 55.9 13.8 68 181-248 219-291 (523)
32 3h99_A Methionyl-tRNA syntheta 98.4 2E-05 8.2E-10 54.7 14.5 75 33-113 17-100 (560)
33 2x1l_A Methionyl-tRNA syntheta 98.4 4.5E-06 1.9E-10 58.9 10.8 77 189-277 262-340 (524)
34 2d5b_A Methionyl-tRNA syntheta 98.0 4.1E-05 1.7E-09 52.6 8.8 67 44-113 14-85 (500)
35 1li5_A Cysrs, cysteinyl-tRNA s 97.8 0.00036 1.5E-08 46.4 11.0 214 32-263 19-295 (461)
36 1p9k_A ORF, hypothetical prote 97.7 9.5E-06 4E-10 56.8 2.1 59 334-395 8-66 (79)
37 1ffy_A Isoleucyl-tRNA syntheta 97.5 0.00028 1.2E-08 47.0 6.9 57 191-248 547-607 (917)
38 1gax_A Valrs, valyl-tRNA synth 97.3 0.00047 2E-08 45.6 5.9 59 190-249 479-541 (862)
39 1wz2_A Leucyl-tRNA synthetase; 97.1 0.00046 1.9E-08 45.6 4.8 56 190-247 601-661 (967)
40 2cqj_A BRMS2, U3 small nucleol 97.0 0.00066 2.8E-08 44.6 4.8 47 351-397 9-57 (71)
41 3c8z_A Cysteinyl-tRNA syntheta 97.0 0.019 8.1E-07 35.0 12.1 65 33-100 37-106 (414)
42 3jyv_D 40S ribosomal protein S 96.9 0.00025 1E-08 47.4 1.5 44 351-394 103-146 (158)
43 1wkb_A Leucyl-tRNA synthetase; 96.8 0.0018 7.4E-08 41.8 5.4 74 190-276 601-679 (810)
44 1ile_A Ilers, isoleucyl-tRNA s 96.8 0.00063 2.7E-08 44.7 3.2 60 190-249 542-604 (821)
45 1s1h_D 40S ribosomal protein S 96.8 0.0012 4.9E-08 43.0 4.2 45 350-394 89-133 (179)
46 1ksk_A Ribosomal small subunit 96.6 0.0014 5.8E-08 42.5 3.9 46 350-396 4-49 (234)
47 3kfl_A Methionyl-tRNA syntheta 96.5 0.00098 4.1E-08 43.5 2.3 67 44-113 37-108 (564)
48 1dm9_A Hypothetical 15.5 KD pr 96.2 0.02 8.5E-07 34.8 7.8 60 348-413 7-66 (133)
49 2vqe_D 30S ribosomal protein S 96.1 0.0073 3.1E-07 37.7 4.9 90 297-396 54-145 (209)
50 3kbg_A 30S ribosomal protein S 96.1 0.011 4.7E-07 36.5 5.9 49 347-395 5-54 (213)
51 3hp7_A Hemolysin, putative; st 96.1 0.0025 1E-07 40.8 2.5 39 355-393 12-52 (291)
52 3dh3_A Ribosomal large subunit 96.0 0.0065 2.7E-07 38.1 4.4 48 225-278 178-238 (290)
53 1c05_A Ribosomal protein S4 de 96.0 0.0088 3.7E-07 37.2 4.9 46 352-397 53-98 (159)
54 1vio_A Ribosomal small subunit 95.8 0.0053 2.2E-07 38.7 3.4 42 353-395 6-47 (243)
55 3fnr_A Arginyl-tRNA synthetase 95.1 0.18 7.7E-06 28.5 12.8 69 181-249 225-298 (464)
56 3bbn_D Ribosomal protein S4; s 95.1 0.014 5.7E-07 36.0 3.4 87 297-396 44-135 (201)
57 3ofo_D 30S ribosomal protein S 94.8 0.016 6.6E-07 35.5 3.0 91 297-396 50-141 (205)
58 1rqg_A Methionyl-tRNA syntheta 93.6 0.067 2.8E-06 31.4 4.2 67 44-113 13-85 (722)
59 2k6p_A Uncharacterized protein 91.1 0.056 2.4E-06 31.9 1.2 52 354-411 5-56 (92)
60 1nzj_A Hypothetical protein YA 90.8 0.33 1.4E-05 26.8 4.9 70 175-249 171-240 (298)
61 2qjt_B Nicotinamide-nucleotide 90.3 0.93 3.9E-05 23.9 6.8 57 35-105 8-65 (352)
62 2cfo_A Glutamyl-tRNA synthetas 90.2 0.84 3.5E-05 24.1 6.5 83 181-263 190-276 (492)
63 3kfl_A Methionyl-tRNA syntheta 89.5 0.33 1.4E-05 26.8 4.0 57 191-249 293-352 (564)
64 1rqg_A Methionyl-tRNA syntheta 89.0 0.061 2.6E-06 31.7 -0.0 20 230-249 338-357 (722)
65 2v0c_A Aminoacyl-tRNA syntheta 88.1 0.26 1.1E-05 27.5 2.7 17 232-248 633-649 (878)
66 1v9f_A Ribosomal large subunit 87.2 0.094 4E-06 30.4 0.0 11 221-231 181-191 (325)
67 1iq0_A Arginyl-tRNA synthetase 85.9 0.46 2E-05 25.8 3.0 45 37-82 107-157 (592)
68 2o5r_A Glutamyl-tRNA synthetas 85.5 1.9 7.8E-05 21.9 6.2 82 181-263 205-291 (481)
69 2zue_A Arginyl-tRNA synthetase 83.0 0.88 3.7E-05 24.0 3.4 57 191-248 376-436 (629)
70 1f7u_A Arginyl-tRNA synthetase 82.1 1.1 4.6E-05 23.4 3.6 47 36-83 146-198 (607)
71 2qjo_A Bifunctional NMN adenyl 81.6 2.7 0.00011 20.8 5.4 56 33-102 6-62 (341)
72 1v8f_A Pantoate-beta-alanine l 81.6 2.5 0.0001 21.0 5.2 58 21-85 4-61 (276)
73 3elb_A Ethanolamine-phosphate 80.4 2.9 0.00012 20.6 6.6 130 32-186 4-146 (341)
74 3nbk_A Phosphopantetheine aden 78.0 3.3 0.00014 20.2 4.9 37 33-76 20-57 (177)
75 1j09_A Glutamyl-tRNA synthetas 74.7 3.5 0.00015 20.0 4.3 63 181-243 186-250 (468)
76 3n8h_A Pantothenate synthetase 74.2 3.2 0.00014 20.3 4.0 164 39-239 25-189 (264)
77 3hl4_A Choline-phosphate cytid 73.9 0.79 3.3E-05 24.3 0.8 132 32-185 73-216 (236)
78 1vlh_A Phosphopantetheine aden 73.9 4.4 0.00019 19.4 5.1 55 31-102 9-64 (173)
79 1kam_A Deamido-NAD(+), nicotin 73.8 4.5 0.00019 19.4 4.9 36 33-74 6-42 (194)
80 1lw7_A Transcriptional regulat 73.5 4.5 0.00019 19.3 5.3 39 33-78 1-40 (365)
81 3afh_A Glutamyl-tRNA synthetas 71.7 5 0.00021 19.0 5.0 65 175-243 198-262 (488)
82 2g1l_A Kinesin-like protein KI 69.4 4.8 0.0002 19.2 4.0 35 372-414 68-102 (104)
83 3f3m_A Phosphopantetheine aden 68.3 5.9 0.00025 18.6 4.8 38 33-77 2-40 (168)
84 3aii_A Glutamyl-tRNA synthetas 68.0 5 0.00021 19.0 3.9 70 181-251 273-352 (553)
85 3ag6_A Pantothenate synthetase 67.9 2.8 0.00012 20.7 2.5 63 20-85 4-67 (283)
86 1qtq_A GLNRS, protein (glutami 67.4 6 0.00025 18.5 4.2 91 181-276 210-313 (553)
87 1coz_A Protein (glycerol-3-pho 67.3 4.7 0.0002 19.2 3.6 52 45-104 9-60 (129)
88 3al0_C Glutamyl-tRNA(Gln) amid 67.3 3.9 0.00016 19.8 3.2 63 181-243 302-366 (592)
89 3guz_A Pantothenate synthetase 66.4 4.2 0.00018 19.5 3.2 50 22-74 5-55 (176)
90 3h05_A Uncharacterized protein 65.9 1.6 6.9E-05 22.2 1.1 23 34-60 2-25 (177)
91 1qjc_A Phosphopantetheine aden 64.9 6.8 0.00029 18.1 5.1 35 34-75 1-36 (158)
92 1wv3_A Similar to DNA segregat 64.6 4.6 0.0002 19.2 3.2 39 373-411 133-171 (238)
93 3inn_A Pantothenate synthetase 62.8 3.6 0.00015 19.9 2.4 77 6-85 10-87 (314)
94 3cov_A Pantothenate synthetase 61.0 2.9 0.00012 20.6 1.6 186 15-239 9-198 (301)
95 3k9w_A Phosphopantetheine aden 60.7 8.1 0.00034 17.6 4.3 34 35-75 6-40 (170)
96 1iho_A Pantoate--beta-alanine 60.1 8.1 0.00034 17.7 3.7 181 22-239 5-188 (283)
97 2ja2_A Glutamyl-tRNA synthetas 59.8 8.4 0.00035 17.6 5.3 86 174-263 194-286 (498)
98 2ejc_A Pantoate--beta-alanine 58.5 5.4 0.00023 18.8 2.6 62 21-85 4-66 (280)
99 2qtr_A Nicotinate (nicotinamid 54.1 6.9 0.00029 18.1 2.6 34 35-74 3-37 (189)
100 3do8_A Phosphopantetheine aden 53.2 11 0.00045 16.9 10.5 50 192-241 86-135 (148)
101 1yum_A 'probable nicotinate-nu 51.7 11 0.00048 16.7 4.5 57 33-102 22-79 (242)
102 2b7l_A Glycerol-3-phosphate cy 51.0 12 0.00049 16.6 3.8 51 45-104 9-60 (132)
103 1o6b_A Phosphopantetheine aden 49.8 12 0.00051 16.5 5.1 36 34-76 2-38 (169)
104 3d0r_A Protein CALG3; calichea 49.0 12 0.00052 16.4 3.5 30 48-77 28-58 (398)
105 3mxt_A Pantothenate synthetase 48.1 4.6 0.00019 19.3 0.9 63 20-86 6-69 (285)
106 2jqj_A DNA damage response pro 47.6 13 0.00055 16.3 4.1 37 373-416 85-121 (151)
107 1k4m_A NAMN adenylyltransferas 47.6 13 0.00055 16.3 5.1 35 36-76 5-41 (213)
108 1wd5_A Hypothetical protein TT 47.3 4.8 0.0002 19.2 0.9 75 195-276 130-206 (208)
109 1ns5_A Hypothetical protein YB 46.9 13 0.00056 16.2 3.9 42 37-80 67-108 (155)
110 1wln_A Afadin; beta sandwich, 44.9 14 0.0006 16.0 3.1 34 373-414 78-111 (120)
111 2eh0_A KLP, kinesin-like prote 42.1 9.2 0.00039 17.3 1.7 34 373-414 78-111 (130)
112 1ej2_A Nicotinamide mononucleo 40.7 17 0.0007 15.6 4.1 54 36-103 5-59 (181)
113 1nup_A FKSG76; NAD biosynthesi 39.9 17 0.00072 15.5 4.6 47 36-88 8-56 (252)
114 3fm8_A Kinesin-like protein KI 38.2 18 0.00076 15.3 4.2 35 373-415 88-122 (124)
115 1hzm_A Dual specificity protei 33.7 17 0.00071 15.6 1.9 18 62-79 121-138 (154)
116 2vch_A Hydroquinone glucosyltr 33.4 22 0.00091 14.8 3.6 25 51-75 17-43 (480)
117 1od6_A PPAT, phosphopantethein 33.0 22 0.00092 14.8 4.0 33 38-77 4-37 (160)
118 3jy6_A Transcriptional regulat 32.6 22 0.00093 14.8 7.9 15 190-204 179-193 (276)
119 1iir_A Glycosyltransferase GTF 31.2 23 0.00098 14.6 3.9 26 51-76 11-37 (415)
120 1kqn_A Nmnat, nicotinamide mon 30.5 24 0.001 14.5 3.5 28 36-67 10-39 (279)
121 3gk5_A Uncharacterized rhodane 30.3 18 0.00077 15.3 1.6 41 32-82 54-94 (108)
122 2p51_A SPCC18.06C protein; DED 28.9 26 0.0011 14.4 4.4 56 49-104 26-81 (333)
123 1f9a_A Hypothetical protein MJ 28.3 26 0.0011 14.3 5.6 52 37-102 3-55 (168)
124 2rbd_A BH2358 protein; putativ 28.3 21 0.00088 14.9 1.6 54 236-289 13-68 (171)
125 2c1x_A UDP-glucose flavonoid 3 27.8 26 0.0011 14.3 2.1 24 51-74 18-42 (456)
126 3gqs_A Adenylate cyclase-like 26.8 28 0.0012 14.1 3.7 35 374-416 68-102 (106)
127 3ia7_A CALG4; glycosysltransfe 25.5 29 0.0012 14.0 3.6 27 50-76 14-41 (402)
128 2iya_A OLEI, oleandomycin glyc 25.5 29 0.0012 14.0 3.9 28 50-77 22-50 (424)
129 2k0z_A Uncharacterized protein 24.8 30 0.0013 13.9 4.0 40 33-82 56-95 (110)
130 3iaa_A CALG2; glycosyltransfer 24.3 31 0.0013 13.8 3.9 27 50-77 31-58 (416)
131 2hz7_A Glutaminyl-tRNA synthet 23.1 32 0.0014 13.7 6.3 83 181-263 250-352 (851)
132 2acv_A Triterpene UDP-glucosyl 22.8 33 0.0014 13.6 3.4 22 51-72 20-42 (463)
133 3hbf_A Flavonoid 3-O-glucosylt 22.5 33 0.0014 13.6 2.1 23 52-74 25-48 (454)
134 3nhv_A BH2092 protein; alpha-b 22.2 34 0.0014 13.6 3.6 52 32-91 71-124 (144)
135 2iyf_A OLED, oleandomycin glyc 21.8 34 0.0014 13.5 2.7 28 50-77 17-45 (430)
136 2pq6_A UDP-glucuronosyl/UDP-gl 21.4 35 0.0015 13.5 3.9 26 50-75 18-44 (482)
137 1uht_A Expressed protein; FHA 20.6 36 0.0015 13.4 2.8 38 373-417 74-112 (118)
138 1wv9_A Rhodanese homolog TT165 20.2 37 0.0016 13.3 1.9 40 32-81 52-91 (94)
No 1
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=0 Score=1085.09 Aligned_cols=409 Identities=37% Similarity=0.617 Sum_probs=386.7
Q ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCC
Q ss_conf 99999996892002299899999851498189998437876202434899999999998598499998260111448898
Q gi|254780949|r 7 DFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSF 86 (418)
Q Consensus 7 ~~~~~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsg 86 (418)
|++++|.+||+++++|++++|+++++++++++||||||||||||+||+||+|+|||||++||+||+|||||||+||||||
T Consensus 2 ~~~~~l~~Rg~i~~~t~~~~l~~~l~~~~~~~y~G~DPTa~sLHlGhlv~l~~l~~fq~~Gh~~i~liGg~T~~IGDPsG 81 (419)
T 2ts1_A 2 DLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSG 81 (419)
T ss_dssp HHHHHHHHHTCCSEESCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTT
T ss_pred CHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCC
T ss_conf 66899997788455089999999861898569993678987530877999999999998699089996454157328999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 86210246889999999999999887653267776402330167523431346888752234478753478888740356
Q gi|254780949|r 87 RDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE 166 (418)
Q Consensus 87 k~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~ 166 (418)
|++||++++.++|.+|+++|+.|+.+|+++.+.+++++||||+|||++|+++||||++|+|||||+||+||+|++|++
T Consensus 82 k~~~R~~l~~~~i~~n~~~i~~q~~~~l~~~~~~~~~~iv~N~~W~~~~~~~~~l~~~g~~~~v~~ml~rd~~~~R~~-- 159 (419)
T 2ts1_A 82 KKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIE-- 159 (419)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--
T ss_conf 765555689999999999999999887512246887199880785076238999999747740767762056860344--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCC-CCCEEEEEECEEECCCCHHHHHHHHCCC
Q ss_conf 883157889898989999999854297020154125889988899997316-7971798311023687102235431012
Q gi|254780949|r 167 QSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK-TPKLFALTSPLLTTASGTKMGKTLSGAI 245 (418)
Q Consensus 167 ~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~-~~~~~glT~PLLt~~dG~KmgKS~~naI 245 (418)
+|||||||+||+|||||||||+++|+|++|||||||||||++|||||||.. ..++||||+||||++||+|||||++|||
T Consensus 160 ~gis~~Ef~Y~llQayD~~~L~~~~~~~iqiGGsDQ~gNi~~G~dLir~~~g~~~~~glT~PLL~~~dG~K~gKS~~n~i 239 (419)
T 2ts1_A 160 TGISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTI 239 (419)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99677551102120001567776358406883305678998889999863598762488413103888775031179987
Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 333457997999998862078889879975068885675554333--210220268898999999730000046799986
Q gi|254780949|r 246 WLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL--QGKEINEAKKIIATEITTMVHGREEAEKAATAA 323 (418)
Q Consensus 246 wLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~--~~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~~s 323 (418)
|||+++||||+|||||||+||++|++||++||++|++||+++++. .+++||+||+.||+|||++|||+++|++|++++
T Consensus 240 wl~~~~tSPy~~yq~~mni~D~~v~kylklfT~l~~~eI~~l~~~~~~~~~~r~aKk~LA~eit~lvHG~~~a~~A~~~~ 319 (419)
T 2ts1_A 240 WLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRIS 319 (419)
T ss_dssp BSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 34456689799997843787999999999745699999999999874176226899999999999846807789999999
Q ss_pred HHHCCCCCCCCCCCCEEC-----CHHHH-CCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHHC
Q ss_conf 431025764225771030-----77782-169988999998499788689999987698798879804800023777714
Q gi|254780949|r 324 MECFDMSIHSQHMPTISI-----SKDEV-SRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFD 397 (418)
Q Consensus 324 ~~lF~~~~~~~~lp~~~i-----~~~~i-~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~~ 397 (418)
+.+|+++..+.+.|++.. +.... ..+++++|+|+++|+|+|||||||+|+||||||||++|+|+++.++.++++
T Consensus 320 ~~lF~~~~~~~~~~e~~~~~~~ip~~~~~~~~i~l~dlL~~~gl~~SksEARRLI~qGgV~INg~kI~D~~~~i~~~~~l 399 (419)
T 2ts1_A 320 EALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCHHHCC
T ss_conf 99707877666625666655304401115789769999998599778999999998699898999923832212775604
Q ss_pred CCCEEEEEECCEEEEEEEEC
Q ss_conf 79769997778548999971
Q gi|254780949|r 398 STGNIKLSFGKKNHIICHLC 417 (418)
Q Consensus 398 ~~~~liLr~GKK~~~lI~iv 417 (418)
++++++||+|||+|++|+..
T Consensus 400 ~g~~~lLr~GKK~~~~Ik~a 419 (419)
T 2ts1_A 400 EGRFTVIRRGKKKYYLIRYA 419 (419)
T ss_dssp --------------------
T ss_pred CCCEEEEEECCCCEEEEEEC
T ss_conf 89789999648648999839
No 2
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=0 Score=1073.55 Aligned_cols=406 Identities=36% Similarity=0.638 Sum_probs=384.5
Q ss_pred HHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCC
Q ss_conf 36799999996892002299899999851498189998437876202434899999999998598499998260111448
Q gi|254780949|r 4 FKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGD 83 (418)
Q Consensus 4 ~~~~~~~~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGD 83 (418)
|-++++++|.|||+++++|++++|+++++++++++||||||||||||+||+||+|+|++||++||+||+|||||||+|||
T Consensus 1 m~~~~~~~L~~Rg~i~~~t~~~~l~~~l~~~~~~~y~G~DPTa~sLHlGh~v~l~~l~~~q~~Gh~~i~liGg~T~~IGD 80 (420)
T 1jil_A 1 MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGD 80 (420)
T ss_dssp -CCHHHHHHHHTTCCCCBSCHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCC
T ss_pred CCHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 96489999997799144289999999985799579992678987621553999999999998699179996675301369
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89886210246889999999999999887653267776402330167523431346888752234478753478888740
Q gi|254780949|r 84 PSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRL 163 (418)
Q Consensus 84 Psgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl 163 (418)
||||+++|++|+.++|.+|+++|+.|+.+++++.+ ++++++|||++||++|+++||||++|+|||||+||+||+|++|+
T Consensus 81 Psgk~~~R~~l~~~~v~~n~~~~~~q~~~~~~~~~-~~~~~iv~N~~W~~~~~~~d~l~~~g~~~tv~~ML~rd~~k~Rl 159 (420)
T 1jil_A 81 PSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGT-DHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL 159 (420)
T ss_dssp CTTCSSCCCCCCHHHHHHHHHHHHHHHHHHSCCSS-SSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCHHHHCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHH
T ss_conf 99985323555289999999998999998875503-56549954468655563999999851221000677637999875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCC-CCCEEEEEECEEECCCCHHHHHHHH
Q ss_conf 356883157889898989999999854297020154125889988899997316-7971798311023687102235431
Q gi|254780949|r 164 KREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK-TPKLFALTSPLLTTASGTKMGKTLS 242 (418)
Q Consensus 164 ~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~-~~~~~glT~PLLt~~dG~KmgKS~~ 242 (418)
+ +|||||||+|||||||||+||+.+++|++|||||||||||++|||||||.+ ++++||+|+||||++||+|||||+|
T Consensus 160 ~--~~is~~EF~YpllQayDf~~L~~~~~~~iqiGGsDQ~gNi~~G~~Li~~~~~~~~~~glt~pLl~~~~G~KmgKS~~ 237 (420)
T 1jil_A 160 E--HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES 237 (420)
T ss_dssp T--TTCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSS
T ss_pred H--CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHCCC
T ss_conf 0--89761014115566767999887609228995030001266658888754377753999840037766657022379
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 0123334579979999988620788898799750688856755543332--10220268898999999730000046799
Q gi|254780949|r 243 GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ--GKEINEAKKIIATEITTMVHGREEAEKAA 320 (418)
Q Consensus 243 naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~~~pr~aKk~LA~EiT~lvHGe~~a~~A~ 320 (418)
||||||+++||||+|||||||+||++|++||++||++|.+||+++++.+ +++||+||+.||+|||++|||++++.+|+
T Consensus 238 n~iwL~~~~tSP~~~yq~~m~i~D~~v~~ylklfT~l~~~eI~~l~~~~~~~~~~r~akk~LA~Evt~lvHG~e~a~~A~ 317 (420)
T 1jil_A 238 GAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAI 317 (420)
T ss_dssp SBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 84350257788399999985188999999999823325888999999886084045678999999999706777789999
Q ss_pred HHHHHHCCCCCCC----------CCCCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCE
Q ss_conf 9864310257642----------257710307778216998899999849978868999998769879887980480002
Q gi|254780949|r 321 TAAMECFDMSIHS----------QHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQ 390 (418)
Q Consensus 321 ~~s~~lF~~~~~~----------~~lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~ 390 (418)
++++.+|++.... .++|++.+.. .+++++++|+++|+|+|||||||+|+||||||||++|+|+++.
T Consensus 318 ~~~~~lF~~~~~~~~~~e~~~~~~~iP~~~l~~----~~~~l~dlL~~~gL~~SksEARRLI~qGgV~IN~~ki~D~~~~ 393 (420)
T 1jil_A 318 RISQALFSGDLKSLSAKELKDGFKDVPQVTLSN----DTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYA 393 (420)
T ss_dssp HHHHHHC-------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECC----CCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCE
T ss_conf 999998335643468355543331487277157----8878999999849867799999999849989999980485451
Q ss_pred ECHHHHCCCCEEEEEECCEEEEEEEE
Q ss_conf 37777147976999777854899997
Q gi|254780949|r 391 IKLQDFDSTGNIKLSFGKKNHIICHL 416 (418)
Q Consensus 391 i~~~d~~~~~~liLr~GKK~~~lI~i 416 (418)
++.++++++++++||+|||+|++|++
T Consensus 394 l~~~~~~~g~~~iLr~GKK~~~lI~~ 419 (420)
T 1jil_A 394 LAPEDKIDGEFTIIRRGKKKYFMVNY 419 (420)
T ss_dssp --------------------------
T ss_pred ECHHHCCCCCEEEEEECCCCEEEEEE
T ss_conf 27767048978999965874799987
No 3
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=1059.38 Aligned_cols=413 Identities=35% Similarity=0.601 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCC
Q ss_conf 36799999996892002299899999851498189998437876202434899999999998598499998260111448
Q gi|254780949|r 4 FKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGD 83 (418)
Q Consensus 4 ~~~~~~~~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGD 83 (418)
|..|++++|.+||+|+++|++++|+++++++++++|+||||||||||+||+||+|+||+||++||+||+||||+||+|||
T Consensus 1 m~~~~l~eL~~Rg~i~~~t~~~~l~~~~~~~~~~~y~G~DPTa~sLHlGh~v~l~~l~~fq~~Gh~~v~liG~~Ta~IGD 80 (432)
T 2jan_A 1 MSGMILDELSWRGLIAQSTDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGD 80 (432)
T ss_dssp ----CHHHHHHHTCCSEESCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHHC
T ss_pred CCHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCC
T ss_conf 97689999998799444189999999984699679980688997630877999999999998799799997654010579
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89886210246889999999999999887653267776402330167523431346888752234478753478888740
Q gi|254780949|r 84 PSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRL 163 (418)
Q Consensus 84 Psgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl 163 (418)
||||+ ||++++.+++.+|+++|+.|+.+|+++++.+..++||||+|||++|+++||||++|++|||++||+||+|++|+
T Consensus 81 Psg~~-er~~~~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~d~l~~~g~~~~v~~ml~rd~~k~R~ 159 (432)
T 2jan_A 81 PRDVG-ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL 159 (432)
T ss_dssp CCCTT-TSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT
T ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHCCHHHHHHHHHCCEEHHHHHHHHHHHHHH
T ss_conf 99998-57678899999999999988888831036766459973399874264778999984432000466667898875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHH-H
Q ss_conf 356883157889898989999999854297020154125889988899997316797179831102368710223543-1
Q gi|254780949|r 164 KREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTL-S 242 (418)
Q Consensus 164 ~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~-~ 242 (418)
++ +|||||||+||||||||||||+++|||++|||||||||||++||||||+.+++++||||+||||++||+|||||. +
T Consensus 160 ~~-~~is~~EF~YpllQayD~v~L~~~~~~dvqiGGsDQ~gNi~~G~~l~~~~~~~~~~~lT~PLL~~~dG~K~gks~~~ 238 (432)
T 2jan_A 160 AG-EGISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp ST-TCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 16-88635655367776879999876249627997477899999768899874787526886325227987832341368
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 0123334579979999988620788898799750688856755543332--10220268898999999730000046799
Q gi|254780949|r 243 GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ--GKEINEAKKIIATEITTMVHGREEAEKAA 320 (418)
Q Consensus 243 naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~~~pr~aKk~LA~EiT~lvHGe~~a~~A~ 320 (418)
|||||||++||||+|||||||+||++|++||++||++|++||+++++.+ +++||.||++||.|||++|||++++++|+
T Consensus 239 ~~iwld~~~tsP~~~yq~~~n~~D~~v~kyl~l~T~l~~~eI~~l~~~~~~~p~~r~akk~LA~Evt~lvHGeeaa~~A~ 318 (432)
T 2jan_A 239 GSLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLVHGEAATAAVE 318 (432)
T ss_dssp CBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 74242368888699997740278899999999845788778999999742376403678999999999704889999999
Q ss_pred HHHHHHCCCCCCCCC--------CCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEEC
Q ss_conf 986431025764225--------771030777821699889999984997886899999876987988798048000237
Q gi|254780949|r 321 TAAMECFDMSIHSQH--------MPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIK 392 (418)
Q Consensus 321 ~~s~~lF~~~~~~~~--------lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~ 392 (418)
++++.+|+++..++. +|++.+.......+.+++|+|+++|+|+|||||||+|+|||||||+++|+|+++.++
T Consensus 319 ~~~~~lF~~~~~~~~~~~~l~~~~~~~~i~~l~~~~~~~l~dLLv~~gL~~SksEARRLI~qGgV~IN~~kI~d~~~~l~ 398 (432)
T 2jan_A 319 HASRALFGRGELARLDEATLAAALRETTVAELKPGSPDGIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQ 398 (432)
T ss_dssp HHHHHTTTSSCTTSCCHHHHHHHHHHSCEEEECSSSCCSHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCC
T ss_conf 99999856899765644567764557862330467867699999982897789999999991989989998169433137
Q ss_pred HHHHCCCCEEEEEECCEEEEEEEECC
Q ss_conf 77714797699977785489999719
Q gi|254780949|r 393 LQDFDSTGNIKLSFGKKNHIICHLCG 418 (418)
Q Consensus 393 ~~d~~~~~~liLr~GKK~~~lI~ivg 418 (418)
..+++.+++++||+|||+|++|++||
T Consensus 399 ~~d~~~g~~~iLr~GKK~f~~Vk~ig 424 (432)
T 2jan_A 399 SSDFLHGRWLVLRRGKRSIAGVERIG 424 (432)
T ss_dssp GGGSBTTTEEEEESSSSCEEEEEEC-
T ss_pred HHHHCCCCEEEEEECCEEEEEEEEEE
T ss_conf 87813798899997680089999961
No 4
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=0 Score=875.93 Aligned_cols=329 Identities=32% Similarity=0.559 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHCCCHHHCCC-HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCC
Q ss_conf 136799999996892002299-8999998514981899984378762024348999999999985984999982601114
Q gi|254780949|r 3 AFKSDFLSILSERGFIHQISN-PRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSII 81 (418)
Q Consensus 3 ~~~~~~~~~L~~Rg~i~~~~~-~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~I 81 (418)
..+++++++|.|||+|+|+|+ +++|+++++++++++||||||||+|||||||||+|+|+|||++||+||+||||+||+|
T Consensus 31 ~~~~~~l~~l~~Rg~i~~~~~~~e~l~~ll~~~~~~~Y~G~DPTa~SLHlGhLv~l~~L~~~Q~~Gh~~i~LiGg~Ta~I 110 (392)
T 1y42_X 31 GKKQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKI 110 (392)
T ss_dssp TSSCCHHHHHHHHTCCSCEESCHHHHHHHHHHCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTCEEEEEECTTTTTT
T ss_pred CCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEE
T ss_conf 35556999999768645308819999999708996699823689864208779999999999987994799976753670
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----------CCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 488988621024688999999999999988765326-----------777640233016752343134688875223447
Q gi|254780949|r 82 GDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYG-----------TGKTDALMLNNETWLCSIKYIDLLREIGSFFSV 150 (418)
Q Consensus 82 GDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~-----------~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v 150 (418)
||||||+++|++++.+++.+|+++|++|+++++++. +....+.+|||++|++++++++|||++|++|+|
T Consensus 111 GDPsgk~~~R~~l~~e~i~~N~~~i~~qi~~~~~~~~~~~~~~~~~~~~~~~~~ivnN~~W~~~l~~~~flr~~g~~~~v 190 (392)
T 1y42_X 111 GDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRI 190 (392)
T ss_dssp CCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHCCCCH
T ss_conf 49998754566779899998899999999999702221000011345555530454559988538799999997331119
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCC-------------
Q ss_conf 8753478888740356883157889898989999999854297020154125889988899997316-------------
Q gi|254780949|r 151 NRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK------------- 217 (418)
Q Consensus 151 ~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~------------- 217 (418)
|+||+||+|++|+++++||||+||+||+||||||+||+++|+|++|+|||||||||++|||||||.+
T Consensus 191 ~~ml~rd~vk~Rl~~~~~is~~Ef~YpllQayDf~~L~~~~~~~lqiGGsDQ~gNi~~G~dlir~~~~~~~~~~~~~~~~ 270 (392)
T 1y42_X 191 GPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVT 270 (392)
T ss_dssp HHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
T ss_conf 99988888888861266641443446877434499999984887057424304767768889998433463200101233
Q ss_pred ----CCCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH--H
Q ss_conf ----7971798311023687102235431012333457997999998862078889879975068885675554333--2
Q gi|254780949|r 218 ----TPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL--Q 291 (418)
Q Consensus 218 ----~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~--~ 291 (418)
.+++||+|+||||++||+|||||+|||||||+++||||+|||||||+||++|++||++||++|++||++|++. .
T Consensus 271 ~~~~~~~~~glT~PLLt~~dG~KmgKS~gnaIwLd~~~tSpye~yq~~~n~~D~~v~~yLklfT~l~~eeI~~l~~~~~~ 350 (392)
T 1y42_X 271 PKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHIK 350 (392)
T ss_dssp CCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 32256640575215544798304665058975046776677899999834889899999999745999999999999764
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
Q ss_conf 1022026889899999973000004679998643102576
Q gi|254780949|r 292 GKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI 331 (418)
Q Consensus 292 ~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~~~ 331 (418)
+++||+||+.||+|||++|||+++|++|+++++.+|+++.
T Consensus 351 ~~~~r~aKk~LA~evt~lvHG~~~a~~A~~~~~~lF~g~~ 390 (392)
T 1y42_X 351 DPSKRVAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQM 390 (392)
T ss_dssp CGGGCHHHHHHHHHHHHHHHCHHHHHHHHHHHTSSCCC--
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9987999999999999996799999999999998718988
No 5
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=0 Score=823.91 Aligned_cols=317 Identities=42% Similarity=0.764 Sum_probs=308.1
Q ss_pred HHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCC
Q ss_conf 67999999968920022998999998514981899984378762024348999999999985984999982601114488
Q gi|254780949|r 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDP 84 (418)
Q Consensus 5 ~~~~~~~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDP 84 (418)
.+|++++|.+||+++++|++++|++.++++++++|+||||||+|||||||||+++|+|||++||+||+|+||+||+||||
T Consensus 3 ~~~~~~~L~~Rgli~~~t~~e~L~~~l~~~~~~~Y~G~DPTa~sLHlGhlv~l~~l~~~q~~G~~~v~LiG~~T~~IGDP 82 (322)
T 2yxn_A 3 SSNLIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDP 82 (322)
T ss_dssp CCSHHHHHHHTTCCSEESSHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCC
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCC
T ss_conf 55899999977992013899999999955996799806799875308789999999999985990389953521684599
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98862102468899999999999998876532677764023301675234313468887522344787534788887403
Q gi|254780949|r 85 SFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLK 164 (418)
Q Consensus 85 sgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~ 164 (418)
|||+++|+.++.+++++|+++|.+|+.++++++.+++++.++||+||++++++++|||++|++||||+||+||+|++|++
T Consensus 83 sgk~~~r~~l~~~~v~~n~~~~~~q~~~il~~~~~~~~~~i~~N~~w~~~~~~~~~l~~~gk~~tv~~ml~r~~~~~r~~ 162 (322)
T 2yxn_A 83 SFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLN 162 (322)
T ss_dssp TTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88640000488999999999999999999514478765389622999854775689999872768999974213434002
Q ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHC
Q ss_conf 5-688315788989898999999985429702015412588998889999731679717983110236871022354310
Q gi|254780949|r 165 R-EQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 (418)
Q Consensus 165 ~-~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~n 243 (418)
+ ++||||+||+||+||||||+||+++|+|++|+|||||||||++||||+||+++++++|||+|||+++||+|||||++|
T Consensus 163 ~~~~~is~~Ef~YpllQayD~~~L~~~~~~~iqiGGsDQ~~ni~~Grdl~~~~~~~~~~~it~pLl~~~~G~K~gKS~~n 242 (322)
T 2yxn_A 163 REDQGISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG 242 (322)
T ss_dssp CTTCCCCHHHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTE
T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCC
T ss_conf 46788427767778884301999736678315653652377888799999983699828998216530101478887337
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 12333457997999998862078889879975068885675554333--2102202688989999997300000467999
Q gi|254780949|r 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL--QGKEINEAKKIIATEITTMVHGREEAEKAAT 321 (418)
Q Consensus 244 aIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~--~~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~ 321 (418)
|||||+++||||+|||||||+||++|++||++||++|++||+++++. .++++|.||+.||+|||++|||+++|++|++
T Consensus 243 ~i~l~~~~tsp~~~~~k~~n~~D~~v~~yl~~~t~~~~eei~~i~~~~~~~~~~~~~k~~LA~evt~~~hG~e~a~~A~~ 322 (322)
T 2yxn_A 243 AVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKR 322 (322)
T ss_dssp ECBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 65322234586999998817988999999999605999999999998763887889999999999999679999997359
No 6
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens}
Probab=100.00 E-value=0 Score=810.05 Aligned_cols=329 Identities=36% Similarity=0.617 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHCCCHHHCCCH----HHHHHHH----HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 367999999968920022998----9999985----14981899984378762024348999999999985984999982
Q gi|254780949|r 4 FKSDFLSILSERGFIHQISNP----RELDILC----SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMG 75 (418)
Q Consensus 4 ~~~~~~~~L~~Rg~i~~~~~~----~~l~~~l----~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG 75 (418)
..++++++|+|||+|++++++ ++|++++ +++|+++|+||||||+||||||+||+++|++||++||+||+|||
T Consensus 7 ~~~~~l~~~~~RGli~~~~~~~~~~~~L~~ll~~~~~~~~~~vY~G~DPT~~sLHlGhlv~l~~l~~~q~~G~~~ivLiG 86 (356)
T 2pid_A 7 GAQGLLAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVG 86 (356)
T ss_dssp ---CHHHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 65067999997475887665413078999999876437983799815789875309889999999999986998999967
Q ss_pred CHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 60111448898862102468899999999999998876532-------67776402330167523431346888752234
Q gi|254780949|r 76 GGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKY-------GTGKTDALMLNNETWLCSIKYIDLLREIGSFF 148 (418)
Q Consensus 76 ~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~-------~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~ 148 (418)
||||+|||||||+++|+.++.|+|++|+++|+.|+.++++. ...+....|+||++|+++++++||||++|++|
T Consensus 87 d~Ta~IgDPsgk~~eR~~l~~e~i~~n~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~~N~~w~~~~~~~d~l~~~gk~~ 166 (356)
T 2pid_A 87 GATARLGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHF 166 (356)
T ss_dssp TTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGS
T ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCE
T ss_conf 65034179998764305732999999999999999998513666403345777548964699970636889999850230
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECE
Q ss_conf 47875347888874035688315788989898999999985429702015412588998889999731679717983110
Q gi|254780949|r 149 SVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPL 228 (418)
Q Consensus 149 ~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PL 228 (418)
||++|++||+|++|++++.|+||+||+||+||||||+||+++|+|++|+||+||||||++||||++|.++++++|+|+||
T Consensus 167 ~v~~ml~~~~v~~R~~~~~~~s~~Ef~YplmQa~D~~~L~~~~~~diqiGG~DQ~~ni~~grdl~~~~~~~~~~~lt~pL 246 (356)
T 2pid_A 167 RMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPL 246 (356)
T ss_dssp BHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECC
T ss_pred EHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 09989988999999613789656888788885888999986349851540346088999899999982698760786057
Q ss_pred EECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHH
Q ss_conf 236871022354310123334579979999988620788898799750688856755543332--102202688989999
Q gi|254780949|r 229 LTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ--GKEINEAKKIIATEI 306 (418)
Q Consensus 229 Lt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~~~pr~aKk~LA~Ei 306 (418)
|+++||+|||||++||||||+++||||+|||||||+||++|++||++||++|++||+++++.+ +++||++|+.||+||
T Consensus 247 L~~~~G~KmgKS~~nai~L~~~~tSp~e~yqk~~~~~D~~v~~yl~~~t~l~~~eie~l~~~~~~~~~~r~~K~~LA~ei 326 (356)
T 2pid_A 247 ITSTTGAKLGKSAGNAVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEV 326 (356)
T ss_dssp CC-------------CCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 56788970322457865213455886999999946999999999999656999999999998626988589999999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCC
Q ss_conf 99730000046799986431025764
Q gi|254780949|r 307 TTMVHGREEAEKAATAAMECFDMSIH 332 (418)
Q Consensus 307 T~lvHGe~~a~~A~~~s~~lF~~~~~ 332 (418)
|++|||+++|++|+++++.+|+++-.
T Consensus 327 t~~~hg~~~~~~a~~~~~~lF~~s~~ 352 (356)
T 2pid_A 327 TKLVHGREGLDSAKRCTQALYHRSHH 352 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99968999999999999998666645
No 7
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=0 Score=790.86 Aligned_cols=388 Identities=25% Similarity=0.364 Sum_probs=354.8
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCC
Q ss_conf 99968920022998999998514981899984378762024348999999999985984999982601114488988621
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDES 90 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~ 90 (418)
.|.+||+++.+++++.++.+.+++++++|+||||||+||||||+++++.|++||++||+|+++|||+||+|||||||+.+
T Consensus 13 ~Li~Rg~~~i~~~eel~~~l~~~~~~~~Y~G~dPTg~sLHlGhlv~~~~l~~lq~~G~~~~~li~d~ta~igDp~g~~~~ 92 (432)
T 1h3f_A 13 ALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKT 92 (432)
T ss_dssp HHHHTTCSEEETHHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHTTCEEEEEECCCC------------
T ss_pred HHHHCCCCEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHH
T ss_conf 99872870025989999999649998899846789975309989999999999988994999983622794689861121
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 02468899999999999998876532677764023301675234313468887522344787534788887403568831
Q gi|254780949|r 91 RRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLS 170 (418)
Q Consensus 91 R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is 170 (418)
|+.++.+++.+|++.+..|+..++++. +....+++|++|+..+++++||+ +|++|+|++|++|+++++|++++.++|
T Consensus 93 r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~v~~~~~~~~~~~r~~~~~~~~ 169 (432)
T 1h3f_A 93 RPPLTLEETRENAKTYVAQAGKILRQE--PHLFELRYNSEWLEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGIPIS 169 (432)
T ss_dssp ---------HHHHHHHHHHHTTTSCCC--TTTEEEEETHHHHTTCBHHHHHH-HHTTSBHHHHTTSHHHHHHHHTTCCCB
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCHHHHHH-HCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 110549999999999999886542013--32111103388873234999986-444010031010378987763146654
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC-HHHHHHHHCCCCCCC
Q ss_conf 5788989898999999985429702015412588998889999731679717983110236871-022354310123334
Q gi|254780949|r 171 FLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG-TKMGKTLSGAIWLNK 249 (418)
Q Consensus 171 ~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG-~KmgKS~~naIwLd~ 249 (418)
++||+||+||||||++| +|++|+||+||||||++|||+++|++..+++++|+|+|++++| +|||||++|||||+
T Consensus 170 ~~ef~YpllQa~D~~~l----~~~~~~gG~DQ~~~i~~~rd~~~r~~~~~~~~~~~p~l~~~~g~~KmskS~~~~i~l~- 244 (432)
T 1h3f_A 170 LHELLYPFAQAYDSVAI----RADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLT- 244 (432)
T ss_dssp GGGGTHHHHHHHHHHHH----TCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTT-
T ss_pred CCCCCCHHHHHHHHHHH----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 32124425666567776----0677667373799999888988861887736997375403787676668999971326-
Q ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHH---------
Q ss_conf 57997999998862078889879975068885675554333210220268898999999730000046799---------
Q gi|254780949|r 250 EMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAA--------- 320 (418)
Q Consensus 250 ~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~~~~pr~aKk~LA~EiT~lvHGe~~a~~A~--------- 320 (418)
+|||+|||||||+||++|++||++||++|++||+++++ ++++.+|++||.++|+++||.+.+..++
T Consensus 245 --~~p~~~~~~~~~~~D~dv~kyLklfT~l~~eEIe~l~~---~~~~~~qk~LA~evt~~~h~~~~~~~~~~~~~~~~~~ 319 (432)
T 1h3f_A 245 --EPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLK---AGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGY 319 (432)
T ss_dssp --SCHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHH---HCHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTC
T ss_pred --CCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --78388999998188588999998602256999999986---3700699999999999986444368999999998756
Q ss_pred --------------------HHHHHHCCCCCCCCCCCCEECCHHHHCCC-CCHHHHHHHCCCCCCHHHHHHHHHCCCEEE
Q ss_conf --------------------98643102576422577103077782169-988999998499788689999987698798
Q gi|254780949|r 321 --------------------TAAMECFDMSIHSQHMPTISISKDEVSRG-MGLLTLIVKAGFATSTNEARRHLKSNAIKI 379 (418)
Q Consensus 321 --------------------~~s~~lF~~~~~~~~lp~~~i~~~~i~~~-~~l~dlL~~~gL~~SksEARRlI~qGgV~I 379 (418)
..+...| .+..++++|++.++..++..+ .+|.|+|+++|+|+|||||||||+||||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~lp~~~i~~~~l~~~~~~l~dll~~~gl~~SksEaRRlI~~ggv~I 398 (432)
T 1h3f_A 320 AWEAFGRDKEAGPEEVRRAEARYDEVA-KGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRL 398 (432)
T ss_dssp CGGGTTCCTTCSCHHHHHHHHHHHHHC-C----CCSCEEEECGGGCBTTEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEE
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCEEECHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEE
T ss_conf 677505533221689999998877763-0588323883562388831586409999998599777899999998399898
Q ss_pred CCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEEEEC
Q ss_conf 87980480002377771479769997778548999971
Q gi|254780949|r 380 NNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLC 417 (418)
Q Consensus 380 N~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI~iv 417 (418)
|+++|+|+++.++. +++++||+|||+|++|+|.
T Consensus 399 N~~ki~d~~~~i~~-----~~~~ilr~GKk~~~~i~v~ 431 (432)
T 1h3f_A 399 DGEVLTDPMLQVDL-----SRPRILQRGKDRFVRVRLS 431 (432)
T ss_dssp TTEECCCTTCEEEC-----SSCEEEEETTTEEEEEEEC
T ss_pred CCEEECCCCEEECC-----CCCEEEEECCCCEEEEEEC
T ss_conf 99994387704258-----9838998558528999965
No 8
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Probab=100.00 E-value=0 Score=390.50 Aligned_cols=272 Identities=19% Similarity=0.245 Sum_probs=217.9
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCC
Q ss_conf 99968920022998999998514981899984378762024348999999999985984999982601114488988621
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDES 90 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~ 90 (418)
+|.+||. ++++++++|++++++++.++|+||||||+ |||||+++++.+++||++||+++++|||+||+||||+++
T Consensus 5 ~li~R~~-~ei~~~~~l~~~l~~~~~~vy~G~~PTG~-lHLGh~~~i~~~~~lq~~g~~~~~~iaD~~a~i~~~~~~--- 79 (314)
T 2zp1_A 5 EMIKRNT-SEIISEEELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQKGEL--- 79 (314)
T ss_dssp HHHHTTC-SEEETHHHHHHHHTSSSEEEEEEECCCSS-CBHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCH---
T ss_pred HHHHCCC-CEECCHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCH---
T ss_conf 9988097-03379999999983699969994689970-448999999999999977996899816546665215899---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 02468899999999999998876532677764023301675234313468887522344787534788887403568831
Q gi|254780949|r 91 RRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLS 170 (418)
Q Consensus 91 R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is 170 (418)
++++.+...+...+. .+.+ ++.++.+++|+....+...+..+++++++++|+++++++.|.+ ++++
T Consensus 80 ------~~~r~~~~~~~~~~~-a~g~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~r~~--~~~~ 145 (314)
T 2zp1_A 80 ------DEIRKIGDYNKKVFE-AMGL-----KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED--ENPK 145 (314)
T ss_dssp ------HHHHHHHHHHHHHHH-HTTC-----CCEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCC--SSCC
T ss_pred ------HHHHHHHHHHHHHHH-HCCC-----CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_conf ------998888888999998-3476-----5430121154410578999999854545410222222222025--6887
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH-HHHHHHHCCCCCCC
Q ss_conf 57889898989999999854297020154125889988899997316797179831102368710-22354310123334
Q gi|254780949|r 171 FLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT-KMGKTLSGAIWLNK 249 (418)
Q Consensus 171 ~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~-KmgKS~~naIwLd~ 249 (418)
+.||+||+|||||++++ +|++|+||+|||+|+..|||++++ .++++++|+|++.||+ |||||.+|+|||+
T Consensus 146 ~g~f~YP~lQaaD~l~~----~~~~~~~G~DQ~~~~~l~rdl~~~----~~~~~~~p~l~g~dG~~kmsks~~n~I~L~- 216 (314)
T 2zp1_A 146 VAEVIYPIMQVNTSHYL----GVDVAVGGMEQRKIHMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNFIAVD- 216 (314)
T ss_dssp THHHHHHHHHHHHHHHH----TCSEEEEEGGGHHHHHHHHHHSSS----CCEEEEECCCBCTTSSSBCCTTTTCSCBTT-
T ss_pred CCEEECCCCHHHHHHHC----CCCEEEECHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-
T ss_conf 64244364010024404----784776518888999986776530----232125777679887456667888877740-
Q ss_pred CCCCHHHHHHHHHHH-------CHHHHHHHHHHH--------------CCCCHHHHHHHHHH---HHCCCCHHHHHHHHH
Q ss_conf 579979999988620-------788898799750--------------68885675554333---210220268898999
Q gi|254780949|r 250 EMTSPYNFWQYWRNI-------DDADVVSFAKRL--------------TTLPMSEIDRMAKL---QGKEINEAKKIIATE 305 (418)
Q Consensus 250 ~~tSPy~fyQf~~n~-------~D~dV~kyLklf--------------T~l~l~EI~~l~~~---~~~~pr~aKk~LA~E 305 (418)
+||.+++.+.++. .+..+..|++.| ++++.++++++++. .+-+|.++|+.||++
T Consensus 217 --D~pe~i~~Ki~~a~td~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~eel~~~~~~g~l~~~~~K~~Lae~ 294 (314)
T 2zp1_A 217 --DSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEE 294 (314)
T ss_dssp --CCHHHHHHHHHHSCCCTTCCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf --787899886543137887667896189999874140654269887076876379999999846998989999999999
Q ss_pred HHHHHHH
Q ss_conf 9997300
Q gi|254780949|r 306 ITTMVHG 312 (418)
Q Consensus 306 iT~lvHG 312 (418)
|++++.-
T Consensus 295 i~~~l~p 301 (314)
T 2zp1_A 295 LIKILEP 301 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9998599
No 9
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=0 Score=380.68 Aligned_cols=280 Identities=21% Similarity=0.271 Sum_probs=228.5
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 99968920022998999998514-98189998437876202434899999999998598499998260111448898862
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
+|..|| ++++..+++|++++.+ +++++|+||||||+ +||||+++++.+++||++||+++++|||+||++|||+++
T Consensus 8 ~li~r~-~~ei~~~~el~~~l~~~~~~~vy~G~~PTg~-lHLGh~v~~~~~~~lq~~G~~~~~~i~D~~a~~~~~~~~-- 83 (323)
T 2cyb_A 8 RLITRN-AEEVVTEEELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTF-- 83 (323)
T ss_dssp HHHHTT-CSEEETHHHHHHHHHSCSCCEEEEEECCCSC-CBHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCH--
T ss_pred HHHHCC-CCEECCHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCH--
T ss_conf 998728-6201799999999857999889982699984-679999999999999977990899934388763475759--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
+++..+++... ..++..+-++.++.|+.|++|.....++..+..+++..++++|.+..+..+|. +.++
T Consensus 84 -------~~~~~~~~~~~---~~~~A~G~d~~k~~i~~~S~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~--~~~~ 151 (323)
T 2cyb_A 84 -------EEIAEVADYNK---KVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR--KEDP 151 (323)
T ss_dssp -------HHHHHHHHHHH---HHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSC--SSSC
T ss_pred -------HHHHHHHHHHH---HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCC
T ss_conf -------99998999999---99985389955555687646666789999998653454388888875332102--4677
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 15788989898999999985429702015412588998889999731679717983110236871022354310123334
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
+++||+||+|||||++++ +|++|+||+|||+|+..|||+++|++.++.++++.|+|++.||+|||||.+|+|||+
T Consensus 152 ~~~~~~YP~lQa~D~~~~----~~~~~~~G~DQ~~~~~l~r~~~~r~~~~~~~~l~~p~l~~ldG~KmskS~~n~I~L~- 226 (323)
T 2cyb_A 152 MVSQMIYPLMQALDIAHL----GVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYISVR- 226 (323)
T ss_dssp BTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTSSBCCTTTTCSCBTT-
T ss_pred CCCEECCCCHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-
T ss_conf 732002563224567632----554465032056788999999997078750476168523778863578998864423-
Q ss_pred CCCCHHHHHHHHHHH----------CHHHHHHHH--HHHC------------CCCHHHHHHHHHH--H-HCCCCHHHHHH
Q ss_conf 579979999988620----------788898799--7506------------8885675554333--2-10220268898
Q gi|254780949|r 250 EMTSPYNFWQYWRNI----------DDADVVSFA--KRLT------------TLPMSEIDRMAKL--Q-GKEINEAKKII 302 (418)
Q Consensus 250 ~~tSPy~fyQf~~n~----------~D~dV~kyL--klfT------------~l~l~EI~~l~~~--~-~~~pr~aKk~L 302 (418)
++|.+++++.++. ++.++.+|. ..|. +...++++++++. . .-+|.++|+.|
T Consensus 227 --D~pe~i~kKI~~a~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~g~l~~~~~K~~l 304 (323)
T 2cyb_A 227 --DPPEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAV 304 (323)
T ss_dssp --CCHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHH
T ss_pred --CCHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf --785899886615226897767786443201233454401123129987387777779999999873898979999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999973000
Q gi|254780949|r 303 ATEITTMVHGR 313 (418)
Q Consensus 303 A~EiT~lvHGe 313 (418)
|++++++++.-
T Consensus 305 a~~l~~~L~pi 315 (323)
T 2cyb_A 305 AKYLNMLLEDA 315 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999986999
No 10
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=0 Score=377.01 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=228.6
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCC
Q ss_conf 99968920022998999998514981899984378762024348999999999985984999982601114488988621
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDES 90 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~ 90 (418)
+|.+||+. ++..+++|+++++++++++|+||||||+ +||||+++++++++||++||+++++|||+||+||||++....
T Consensus 12 ~Li~r~~~-e~~~~~~L~~~L~~k~~~vy~G~~PTg~-lHLG~~v~~~~l~~~~~~g~~~~ilIaD~~a~i~d~~~~~~~ 89 (372)
T 1n3l_A 12 HLITRNLQ-EVLGEEKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWEL 89 (372)
T ss_dssp HHHHTTCS-EEECHHHHHHHHTTSCCEEEEEECCSSC-CBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHH
T ss_pred HHHHCCCC-EECCHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH
T ss_conf 99974972-4369999999982699989992688963-389999999999999988996899980511002799994899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0246889999999999999887653-267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 91 RRMMRSQEIQENIEKIKGIFSSFIK-YGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 91 R~~l~~~~i~~n~~~~~~q~~~~~~-~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
+. .....+...+...+. .+-...++.+++|++|.....++..+..+++++++++ .+.+++.|...+.++
T Consensus 90 ~~--------~~~~~~~~~~~a~~~a~g~d~~k~~i~~~S~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 159 (372)
T 1n3l_A 90 LE--------LRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHD--SKKAGAEVVKQVEHP 159 (372)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHH--HHHHTTTTSCCCSSC
T ss_pred HH--------HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCC
T ss_conf 99--------99999999999988872588888410124387664678899877778999988--889999996247898
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHH-HHCCCCCC
Q ss_conf 15788989898999999985429702015412588998889999731679717983110236871022354-31012333
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT-LSGAIWLN 248 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS-~~naIwLd 248 (418)
|+.||+||+|||||++++ +|++|+||+|||+|++.|||+++|++..+.+++++|++++.+|.||||| .+|+|+|+
T Consensus 160 s~~~f~YP~LQaaDil~~----~a~iv~~G~DQ~~~i~l~rdla~k~~~~~~~~l~~pll~~l~G~k~s~s~~~s~I~l~ 235 (372)
T 1n3l_A 160 LLSGLLYPGLQALDEEYL----KVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLL 235 (372)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCBTT
T ss_pred CHHHHHHHHHHHHHHHHC----CCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCCEEECC
T ss_conf 635442017876566532----6777884247889999999999981899874882276553122201369988876523
Q ss_pred CCCCCHHHHHHHHH-------HHCHHHHHHHHHHHCCCCH-----------------HHHHHHHHH---HHCCCCHHHHH
Q ss_conf 45799799999886-------2078889879975068885-----------------675554333---21022026889
Q gi|254780949|r 249 KEMTSPYNFWQYWR-------NIDDADVVSFAKRLTTLPM-----------------SEIDRMAKL---QGKEINEAKKI 301 (418)
Q Consensus 249 ~~~tSPy~fyQf~~-------n~~D~dV~kyLklfT~l~l-----------------~EI~~l~~~---~~~~pr~aKk~ 301 (418)
+||.+...+++ +++|..+..|.+.+++-.. +++++|++. ..-+|.++|+.
T Consensus 236 ---D~~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ele~~~~~g~l~~~dlK~~ 312 (372)
T 1n3l_A 236 ---DRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNS 312 (372)
T ss_dssp ---CCHHHHHHHHHTCCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf ---89999999999700898888878642210001122432133256666357777577999999996599898999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999973000
Q gi|254780949|r 302 IATEITTMVHGR 313 (418)
Q Consensus 302 LA~EiT~lvHGe 313 (418)
||+.|+++++.-
T Consensus 313 la~~i~~~l~pi 324 (372)
T 1n3l_A 313 VEVALNKLLDPI 324 (372)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999988999
No 11
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=347.94 Aligned_cols=283 Identities=15% Similarity=0.148 Sum_probs=230.0
Q ss_pred HHHHCCCHHHCCCHHHHHHHHH--CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCC
Q ss_conf 9996892002299899999851--49818999843787620243489999999999859849999826011144889886
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCS--QGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRD 88 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~--~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~ 88 (418)
+|..||+ +.+..+++|+++|. ++++++|.||||||+ +||||+++++++++||++||+++++|||+||++|||++.
T Consensus 14 ~li~r~~-~ei~~~e~l~~~l~~~~~~~~iytG~~PTG~-lHlGh~v~~ik~~~~~~~g~~~~i~IaD~~a~~~~~~~~- 90 (394)
T 2dlc_X 14 GLITKNL-QEVLNPQIIKDVLEVQKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAP- 90 (394)
T ss_dssp HHHHTTC-SEEECHHHHHHHHHTSCSCCEEEEEECCCSC-CBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSC-
T ss_pred HHHHCCC-CEECCHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-
T ss_conf 9987397-0446899999999707999779982698862-479999999999999978990899971615311799998-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 210246889999999999999887653-2677764023301675234313468887522344787534788887403568
Q gi|254780949|r 89 ESRRMMRSQEIQENIEKIKGIFSSFIK-YGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQ 167 (418)
Q Consensus 89 ~~R~~l~~~~i~~n~~~~~~q~~~~~~-~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~ 167 (418)
.+.++.|++.+..++..+++ .+-+..++.++.+++|.....++.++..+++++++++|...... +...+.
T Consensus 91 -------~e~i~~~~~~~~~~i~~il~a~g~d~~k~~~~~~S~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~ 161 (394)
T 2dlc_X 91 -------LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGAD--VVKQVA 161 (394)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTT--TSCCCS
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCC
T ss_conf -------89999999999999999998628995525999888345414589999999779799999988888--742457
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCC-CHHHHHHHHC-CC
Q ss_conf 831578898989899999998542970201541258899888999973167971798311023687-1022354310-12
Q gi|254780949|r 168 SLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTAS-GTKMGKTLSG-AI 245 (418)
Q Consensus 168 ~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~d-G~KmgKS~~n-aI 245 (418)
++++++|+||+|||+|++++ +|++|+||+|||+|+..+||+++|++......++.|+|++.+ |.|||||.+| +|
T Consensus 162 ~~~~~~~~YP~lQaaDil~~----~ad~v~~G~DQ~~~~~l~Rd~a~~~~~~~~~~l~~p~l~gL~g~~KMSkS~~ns~I 237 (394)
T 2dlc_X 162 NPLLSGLIYPLMQALDEQFL----DVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKI 237 (394)
T ss_dssp SCCTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC----------CCSC
T ss_pred CCCHHHHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCCCCCCEE
T ss_conf 97278886457764123433----68787242115889999999999727899659961640379988777888999879
Q ss_pred CCCCCCCCHHHHHHHHHHH-------CHHHHHHHHHHHC-----------------CC--------CHHHHHHHHHHH--
Q ss_conf 3334579979999988620-------7888987997506-----------------88--------856755543332--
Q gi|254780949|r 246 WLNKEMTSPYNFWQYWRNI-------DDADVVSFAKRLT-----------------TL--------PMSEIDRMAKLQ-- 291 (418)
Q Consensus 246 wLd~~~tSPy~fyQf~~n~-------~D~dV~kyLklfT-----------------~l--------~l~EI~~l~~~~-- 291 (418)
+|+ +||.+...++++. ++.-+..|.+.+. .. ..++++++++.-
T Consensus 238 ~l~---D~p~~i~kKI~ka~td~~~~e~n~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~e~~~g~~~~~~~eel~~~y~~ 314 (394)
T 2dlc_X 238 DLL---EEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKE 314 (394)
T ss_dssp BTT---CCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHT
T ss_pred EEE---CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 752---69999999998124799876778402324320440554302445531676253540786551579999999975
Q ss_pred -HCCCCHHHHHHHHHHHHHHHH
Q ss_conf -102202688989999997300
Q gi|254780949|r 292 -GKEINEAKKIIATEITTMVHG 312 (418)
Q Consensus 292 -~~~pr~aKk~LA~EiT~lvHG 312 (418)
.-+|.++|+.||+.|++++--
T Consensus 315 g~l~~~dlK~~lae~i~~~l~p 336 (394)
T 2dlc_X 315 EKLSPPDLKIGVADAINELLEP 336 (394)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9979899999999999999899
No 12
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=0 Score=344.82 Aligned_cols=284 Identities=16% Similarity=0.169 Sum_probs=225.5
Q ss_pred HHHCCCHHHCCCHHHHHH-HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCC
Q ss_conf 996892002299899999-8514981899984378762024348999999999985984999982601114488988621
Q gi|254780949|r 12 LSERGFIHQISNPRELDI-LCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDES 90 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~l~~-~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~ 90 (418)
+..||++-+-.+.+.+-+ +-++++..+|+||||||+||||||+++++.+++||++||.++++ +|+|+. +-..
T Consensus 50 ~~rRg~~f~hrd~d~il~~~~~gk~~~vytG~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i------~iaD~~-~~~~ 122 (393)
T 3hv0_A 50 FFRRNIFLSHRDFEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVI------QLTDDE-KFIF 122 (393)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCSSSSCBSTTHHHHHHHHHHHHHHCCCEEE------EECHHH-HHHH
T ss_pred HHHCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE------EEECHH-HHCC
T ss_conf 563352441377999999998299838995706898433499999999999998766987799------984566-5205
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 02468899999999999998876532677764023301675234313468887522344787534788887403568831
Q gi|254780949|r 91 RRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLS 170 (418)
Q Consensus 91 R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is 170 (418)
|+.++.++++.|+..+..++-. .+-++.++.+++|++|+..+. ... +.+++|.+...+++++..+.+++
T Consensus 123 ~~~~~~~e~~~~~~~~~~~~iA---~G~dp~kt~i~~~s~~~~~~~-~~~-------~~l~~~~t~~~~k~~~~~~~~~~ 191 (393)
T 3hv0_A 123 KSNLTLEETHNYAYENMKDIIA---CGFDPELTFIFTNLEYIAELY-PDI-------LRIEKKISCSQIKSIFGFKDSCN 191 (393)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHT---TCCCTTTEEEEEHHHHHHHHH-HHH-------HHHHHHSBHHHHHHHHCCCTTSB
T ss_pred CCCCCHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCHHHHHHH-HHH-------HHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 6789999999999999999997---188976439997848988899-999-------99938573788987744677776
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHHHH
Q ss_conf 5788989898999999985-------4297020154125889988899997316797179831102368710--223543
Q gi|254780949|r 171 FLEFNYMILQAYDFVELAK-------NYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGKTL 241 (418)
Q Consensus 171 ~~EF~Y~llQayD~~~L~~-------~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgKS~ 241 (418)
++||+||+|||||+++++. ++.|+++.+|+|||+||..|||+++|++..+...++.|++++.+|. |||||.
T Consensus 192 ~g~~~YP~lQaaDil~~~~d~~~g~~~~~~~lvPvG~DQ~~hi~ltRdia~r~~~~~~~~~~~~~lp~L~G~~~KMSsS~ 271 (393)
T 3hv0_A 192 VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASV 271 (393)
T ss_dssp HHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC------------
T ss_pred CCCCCCCHHHHCHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 64324533430003430544651676667662504564899999999999983666763002554444678666666788
Q ss_pred -HCCCCCCCCCCCHHHHHHHHHHH-------------------CHHHHHHHHHHHCCCCHHHHHHHHHHH---HCCCCHH
Q ss_conf -10123334579979999988620-------------------788898799750688856755543332---1022026
Q gi|254780949|r 242 -SGAIWLNKEMTSPYNFWQYWRNI-------------------DDADVVSFAKRLTTLPMSEIDRMAKLQ---GKEINEA 298 (418)
Q Consensus 242 -~naIwLd~~~tSPy~fyQf~~n~-------------------~D~dV~kyLklfT~l~l~EI~~l~~~~---~~~pr~a 298 (418)
+++|||+ +||.+++.++++. ++..+..|+++|.. +.++++++.+.- +-.+.++
T Consensus 272 ~~s~I~L~---D~~~~i~~KI~k~~~~~g~~t~~e~~~~~g~~~~~~~~~~l~~~~~-dd~~l~ei~~~y~~G~l~~gd~ 347 (393)
T 3hv0_A 272 QNSSIFVN---DNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLME-DDEKLEEIGKKYSSGEMLSGEI 347 (393)
T ss_dssp -CCCCBTT---CCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHHH
T ss_pred CCCCEECC---CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHH
T ss_conf 43201345---9868999987236517876645662125788047679999998669-8889999999997699899999
Q ss_pred HHHHHHHHHHHHHHHCHHH
Q ss_conf 8898999999730000046
Q gi|254780949|r 299 KKIIATEITTMVHGREEAE 317 (418)
Q Consensus 299 Kk~LA~EiT~lvHGe~~a~ 317 (418)
|+.||+++++++|+-.+..
T Consensus 348 K~~lae~i~~~l~~~rekr 366 (393)
T 3hv0_A 348 KSILVQELVKLTKNHQKNR 366 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999978999999
No 13
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=0 Score=336.43 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=227.8
Q ss_pred HHHHCCCHHHCCCHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 9996892002299899999851-498189998437876202434899999999998598499998260111448898862
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCS-QGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~-~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
+|..||..+.++ +++|+++++ ++++++|+||+|||+ +||||+++++.+++||++||.++++|||+|+++|||++++.
T Consensus 11 ~~~~r~~~ei~~-~e~l~~~l~~~~~~~vytGi~PTG~-lHLGh~~~~~~~~~lq~~g~~~~~~iaD~~a~~~~~~~~~~ 88 (364)
T 2cya_A 11 NRIARNTVEIVT-EEELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDM 88 (364)
T ss_dssp HHHHTTCSEEET-HHHHHHHHHHCSCCEEEEEECCCSS-CBTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCH
T ss_pred HHHHCCCCEECC-HHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCH
T ss_conf 998638736669-9999999847999779976488972-43899999999999987899539998448777558777618
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
+| +..+.+.+...+... +.++..+.++.+++|...-.+...+-.+++++++++|.+++++++|..++.++
T Consensus 89 ~~-------~~~~~~~~~~~~~a~---g~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~r~~~~~~~ 158 (364)
T 2cya_A 89 DL-------IRAAARIVRRVMEAA---GVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEV 158 (364)
T ss_dssp HH-------HHHHHHHHHHHHHHT---TCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGS
T ss_pred HH-------HHHHHHHHHHHHHHC---CCCCHHEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 89-------987599999889860---89713145303317652378999999985323433200467787665127886
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC---------------
Q ss_conf 15788989898999999985429702015412588998889999731679717983110236871---------------
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG--------------- 234 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG--------------- 234 (418)
++.+|+||+|||+|++++ +|++++||.|||+|+..+||+++|++.++.+.+++|++++.+|
T Consensus 159 ~~g~~~YP~LQaaDil~~----~ad~vpvG~DQ~~hl~l~Rdia~k~n~~~~~~l~~p~~~~l~g~~~~~~s~~~~~~~~ 234 (364)
T 2cya_A 159 DASKLIYPLMQVSDIFYM----DLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVL 234 (364)
T ss_dssp CTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC--------------
T ss_pred CCCEEECCCCHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 664220243115667766----4302356667889999999999983798870221576556776430233434555677
Q ss_pred --HHHHHHHHC-CCCCCCCCCCHHHHHHHHHHH-CH------H---HHHHHH---------------HHHCCCCHHHHHH
Q ss_conf --022354310-123334579979999988620-78------8---898799---------------7506888567555
Q gi|254780949|r 235 --TKMGKTLSG-AIWLNKEMTSPYNFWQYWRNI-DD------A---DVVSFA---------------KRLTTLPMSEIDR 286 (418)
Q Consensus 235 --~KmgKS~~n-aIwLd~~~tSPy~fyQf~~n~-~D------~---dV~kyL---------------klfT~l~l~EI~~ 286 (418)
.|||||..| +|.|+ ++|.....++++. .| . ++.+|+ +.+.+.+.+++++
T Consensus 235 ~~~KMSkS~~~s~I~l~---D~~e~I~kKI~ka~td~~~~~~np~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ee 311 (364)
T 2cya_A 235 AEVKMSKSKPETAVFVV---DSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEE 311 (364)
T ss_dssp --CBCCSSSGGGSCBTT---CCHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHH
T ss_pred CCCCCCCCCCCCEEEEC---CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHH
T ss_conf 77666678976623523---898999999876117986767776302556211135676532034888658787474999
Q ss_pred HHHH---HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4333---21022026889899999973000
Q gi|254780949|r 287 MAKL---QGKEINEAKKIIATEITTMVHGR 313 (418)
Q Consensus 287 l~~~---~~~~pr~aKk~LA~EiT~lvHGe 313 (418)
+.+. ..-+|-++|+.||+.|++.+...
T Consensus 312 l~~~~~~g~l~~~dlK~~lae~l~~~L~pi 341 (364)
T 2cya_A 312 LERDYTDGRLHPLDLKNAVAESLIEVVRPI 341 (364)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999997699898999999999999988999
No 14
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=2.8e-45 Score=316.93 Aligned_cols=307 Identities=14% Similarity=0.131 Sum_probs=229.6
Q ss_pred HHHCCCHHHCCCHHHH-HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE-EEEEEECHHHCCCCCCCCCC
Q ss_conf 9968920022998999-998514981899984378762024348999999999985984-99998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPREL-DILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHK-PISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~l-~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~-~i~liG~~T~~IGDPsgk~~ 89 (418)
|..||++-.-.+.+.+ +.+-+++|+.+|+||+|||++|||||+++++++++||++||. +++++||.++...+
T Consensus 84 ~~rRgi~f~hrD~d~il~~~~~gkpf~vytG~~PSg~~lHLGH~i~~~~~k~lQ~~g~~~v~I~iaD~ea~~~~------ 157 (437)
T 1r6u_A 84 FLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK------ 157 (437)
T ss_dssp HHHHTSEEEEESHHHHHHHHTTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHS------
T ss_pred HEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCC------
T ss_conf 00155555327899999999759985899533789875309999999999999970698547886134865158------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431-34688875223447875347888874035688
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIK-YIDLLREIGSFFSVNRMLSFESVRSRLKREQS 168 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~-~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~ 168 (418)
.++.+++.+|+..+..++- .++-++.++.|++|++|+..+. +...+..++++.|+++|.++. ..+.+
T Consensus 158 ---~~~~ee~~~~~~e~~~~~i---A~G~Dp~kt~i~~~s~~~~~~~~~~~~~~~l~k~~t~~~~k~~~------g~~~~ 225 (437)
T 1r6u_A 158 ---DLTLDQAYGDAVENAKDII---ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIF------GFTDS 225 (437)
T ss_dssp ---SCCHHHHHHHHHHHHHHHH---TTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTCBHHHHHHHH------CCCTT
T ss_pred ---CCCHHHHHHHHHHHHHHHH---HHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------CCCCC
T ss_conf ---9999999999999999999---80889531289978889988799999999997646511688875------46777
Q ss_pred CCHHHHHHHHHHHHHHHHH-------HHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHH
Q ss_conf 3157889898989999999-------854297020154125889988899997316797179831102368710--2235
Q gi|254780949|r 169 LSFLEFNYMILQAYDFVEL-------AKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGK 239 (418)
Q Consensus 169 is~~EF~Y~llQayD~~~L-------~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgK 239 (418)
+++.+|+||+|||+|.+++ ++.+.|.++.||+|||+|+..+||+++|++.++...++.|++++.+|. ||||
T Consensus 226 ~~~g~~~yP~lQaaDil~~~~d~i~~~~~~~~~lVPvG~DQ~~hi~ltRdia~r~~~~~p~~i~~~~lp~L~G~~~KMSs 305 (437)
T 1r6u_A 226 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSA 305 (437)
T ss_dssp SBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 76543234488888899841605432667752462333568999999999999836788633214455567876676777
Q ss_pred HH-HCCCCCCCCCCCHHHHHHHHH-------------------HHCHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCC
Q ss_conf 43-101233345799799999886-------------------20788898799750688856755543332-1--0220
Q gi|254780949|r 240 TL-SGAIWLNKEMTSPYNFWQYWR-------------------NIDDADVVSFAKRLTTLPMSEIDRMAKLQ-G--KEIN 296 (418)
Q Consensus 240 S~-~naIwLd~~~tSPy~fyQf~~-------------------n~~D~dV~kyLklfT~l~l~EI~~l~~~~-~--~~pr 296 (418)
|- +++|||+. +|-+++.+++ |.++..+..|++ |++.+.++++++.+.- + -++.
T Consensus 306 S~~~saI~L~D---~p~~I~kKI~k~~~~~g~~t~ee~~~~ggn~~~~v~~~~l~-~f~~dd~~leei~~~y~~G~l~~g 381 (437)
T 1r6u_A 306 SDPNSSIFLTD---TAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT-FFLEDDDKLEQIRKDYTSGAMLTG 381 (437)
T ss_dssp TSSSSCCBTTC---CHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHH-HHCCCHHHHHHHHHHHHHTSSCST
T ss_pred CCCCCCCCCCC---CHHHHHHHHHEEECCCCCCCHHHHHHCCCCCCHHHHHHHHH-HHCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 89866010579---99999986443515899874222442499953106999999-977998899999999875998999
Q ss_pred HHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 2688989999997300--0004679998643102576422577103
Q gi|254780949|r 297 EAKKIIATEITTMVHG--REEAEKAATAAMECFDMSIHSQHMPTIS 340 (418)
Q Consensus 297 ~aKk~LA~EiT~lvHG--e~~a~~A~~~s~~lF~~~~~~~~lp~~~ 340 (418)
++|+.||++++++++. +.-++.+.+..+..+.....+.+++.+.
T Consensus 382 e~Kk~Lae~l~~~l~~~qekr~~~~de~v~~~~~~~kl~~~~~~~~ 427 (437)
T 1r6u_A 382 ELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLA 427 (437)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999999999999899999999998889999848465677699999
No 15
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.4e-45 Score=319.04 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=218.4
Q ss_pred HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE-EEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899-9998514981899984378762024348999999999985984-99998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHK-PISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~-~i~liG~~T~~IGDPsgk~~ 89 (418)
|..||++-.-.+-+. |+.+-+++|+.+|+||||||++|||||+++++.+++||+.||. ++++|||.++...
T Consensus 131 ~lrRgi~f~hRDld~il~~~~~gkpf~vytG~~PSg~sLHLGHli~~~~~k~lQ~~g~~~v~I~IaD~ea~~~------- 203 (477)
T 1r6t_A 131 FLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW------- 203 (477)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHH-------
T ss_pred HHCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCC-------
T ss_conf 2206565414679999999984998389958579985436999999999999998069853688415354137-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431-34688875223447875347888874035688
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIK-YIDLLREIGSFFSVNRMLSFESVRSRLKREQS 168 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~-~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~ 168 (418)
+.++.+++..|+..+..++ +.++-++.++.|++|++|+..+. +...+..+++++|+++|.++ +..+.+
T Consensus 204 --~~~~~ee~~~~~~e~i~~~---iA~GfDpeKt~if~~s~~~~~~~~~~~~~~~l~k~~t~~~~k~~------~gf~~~ 272 (477)
T 1r6t_A 204 --KDLTLDQAYGDAVENAKDI---IACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI------FGFTDS 272 (477)
T ss_dssp --SSCCHHHHHHHHHHHHHHH---HTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTCBHHHHHHH------HCCCTT
T ss_pred --CCCCHHHHHHHHHHHHHHH---HHHCCCCHHCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHH------HCCCCC
T ss_conf --8999999999999999999---98188910328996788988889999999999873656789988------557888
Q ss_pred CCHHHHHHHHHHHHHHHHHH-------HHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHH
Q ss_conf 31578898989899999998-------54297020154125889988899997316797179831102368710--2235
Q gi|254780949|r 169 LSFLEFNYMILQAYDFVELA-------KNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGK 239 (418)
Q Consensus 169 is~~EF~Y~llQayD~~~L~-------~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgK 239 (418)
+++.+|+||+|||+|++++. ..+.|+++.||+|||+|+..+||+++|++..+...++.|++.+.+|. ||||
T Consensus 273 ~nig~~~YP~lQAaDil~~~~d~l~~~~~~~~~LVPvG~DQ~~hi~ltRDiA~R~~~~kP~~l~~~~lpgL~G~~~KMSs 352 (477)
T 1r6t_A 273 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSA 352 (477)
T ss_dssp SBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 87755444288876788741516542677763340330308999999999999835688600014555567897777367
Q ss_pred HH-HCCCCCCC----------------CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--H-CCCCHHH
Q ss_conf 43-10123334----------------579979999988620788898799750688856755543332--1-0220268
Q gi|254780949|r 240 TL-SGAIWLNK----------------EMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ--G-KEINEAK 299 (418)
Q Consensus 240 S~-~naIwLd~----------------~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~-~~pr~aK 299 (418)
|- +|+|||+. .+++.++.++++-|.++..+..|+++| +.+-++++++.+.- + -.+.++|
T Consensus 353 S~~~saI~L~Dspe~IkkKI~k~a~dggr~t~ee~~~~gGnpd~~v~~~yl~~f-~~dd~~leei~~~y~~G~l~~gelK 431 (477)
T 1r6t_A 353 SDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAMLTGELK 431 (477)
T ss_dssp TSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHH-CCCHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 898775443699999999988720589987411043249994220699999998-6998799999999864998989999
Q ss_pred HHHHHHHHHHHHHHCH
Q ss_conf 8989999997300000
Q gi|254780949|r 300 KIIATEITTMVHGREE 315 (418)
Q Consensus 300 k~LA~EiT~lvHGe~~ 315 (418)
+.||+.|+++++.-.+
T Consensus 432 k~Lae~l~~~l~~~qe 447 (477)
T 1r6t_A 432 KALIEVLQPLIAEHQA 447 (477)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999899999
No 16
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei}
Probab=100.00 E-value=0 Score=321.71 Aligned_cols=281 Identities=18% Similarity=0.177 Sum_probs=223.4
Q ss_pred HHHHCCCHHHCCCHHHHH-HHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-EECHHHCCCCCCCCC
Q ss_conf 999689200229989999-985149818999843787620243489999999999859849999-826011144889886
Q gi|254780949|r 11 ILSERGFIHQISNPRELD-ILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISL-MGGGTSIIGDPSFRD 88 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~-~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~l-iG~~T~~IGDPsgk~ 88 (418)
.+..||++-.-.+-+.+- .+-+++++.+|+||+|||++|||||+++++++++||++||.++++ ++|..+ ++++
T Consensus 53 ~~~rRg~~f~hrd~d~il~~~~~gk~~~vytG~~PSg~~lHLGh~v~~~~~~~lQ~~~~~~~~I~iaD~~~-~~~~---- 127 (395)
T 3i05_A 53 HFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEK-FYFR---- 127 (395)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHH-HHHS----
T ss_pred HHHHCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH-CCCC----
T ss_conf 76753633320679999999976998389958478986420999999999999986378605998154533-1377----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 21024688999999999999988765326777640233016752343134688875223447875347888874035688
Q gi|254780949|r 89 ESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQS 168 (418)
Q Consensus 89 ~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~ 168 (418)
.++.+++++++..+..++ +..+-++.++.|++|++|...+ +..+. .+++++|+++|.++..+ +..
T Consensus 128 ----~~~~~~~~~~~~~~~~~~---lA~G~Dp~kt~i~~~s~~~~~~-~~~~~-~l~~~~t~~~~~~~~gf------~~~ 192 (395)
T 3i05_A 128 ----NIPMEQVEAMTTENIKDI---IAMGFDPELTFIFRDFDYMGCM-YRTVA-KIERAFTASQVRGCFGF------AME 192 (395)
T ss_dssp ----CCCHHHHHHHHHHHHHHH---HTTTCCTTSEEEEEHHHHTTTS-HHHHH-HHHHHSBHHHHHHHHCC------CTT
T ss_pred ----CCCHHHHHHHHHHHHHHH---HHHCCCCCCEEEEECHHHHHHH-HHHHH-HHHCCCCCCHHHHHHCC------CCC
T ss_conf ----999999999999999999---9828993144999554878878-99999-99666640269887456------777
Q ss_pred CCHHHHHHHHHHHHHHHHHH--------HHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC--HHHH
Q ss_conf 31578898989899999998--------5429702015412588998889999731679717983110236871--0223
Q gi|254780949|r 169 LSFLEFNYMILQAYDFVELA--------KNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG--TKMG 238 (418)
Q Consensus 169 is~~EF~Y~llQayD~~~L~--------~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG--~Kmg 238 (418)
+++.+|+||+|||+|++++. ..+.|+++.||.|||.|+..+||+++|++..+...+++|+|++.+| +|||
T Consensus 193 ~~~g~~~YP~lQaaDil~~~~~~~~~~~~~~~~~lvpvG~DQ~~~~~ltRdia~k~~~~~p~~~~~~~l~gL~G~~kkmS 272 (395)
T 3i05_A 193 DNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMS 272 (395)
T ss_dssp SBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC--------
T ss_pred CCCCCCCCCHHHHCCHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 65530033145420067533514303322456761215667899999999999982678760113666555779987778
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHH-------------------HHCHHHHHHHHHHHCCCCHHHHHHHHHHH--H-CCCC
Q ss_conf 543101233345799799999886-------------------20788898799750688856755543332--1-0220
Q gi|254780949|r 239 KTLSGAIWLNKEMTSPYNFWQYWR-------------------NIDDADVVSFAKRLTTLPMSEIDRMAKLQ--G-KEIN 296 (418)
Q Consensus 239 KS~~naIwLd~~~tSPy~fyQf~~-------------------n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~-~~pr 296 (418)
||.+|+|||+. ||.+.+.+.+ |.++..+..||++|. .+.+|++++.+.. + -.+.
T Consensus 273 ss~~~~I~L~D---~p~~I~kKI~k~a~~~g~~t~~e~~~~~g~~~~~~v~~~l~~f~-~dd~eleei~~~y~~G~l~~g 348 (395)
T 3i05_A 273 SSSGTAVLLTD---TEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFL-EDDEELARVKKEYMLGRIMTG 348 (395)
T ss_dssp -----CCBTTC---CHHHHHHHHC----------------------CCHHHHHHHHHC-CCSHHHHHHCC-------CHH
T ss_pred CCCCCEEECCC---CHHHHHHHHHHEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHH
T ss_conf 89987414579---99999999875031899875410210689866356999999867-988899999999873898989
Q ss_pred HHHHHHHHHHHHHHHHHCH
Q ss_conf 2688989999997300000
Q gi|254780949|r 297 EAKKIIATEITTMVHGREE 315 (418)
Q Consensus 297 ~aKk~LA~EiT~lvHGe~~ 315 (418)
++|+.||++|++++++-.+
T Consensus 349 d~K~~lae~l~~~l~~~qe 367 (395)
T 3i05_A 349 EVKKLLINTITAITKTHQE 367 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999899999
No 17
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=3.2e-44 Score=310.49 Aligned_cols=285 Identities=18% Similarity=0.214 Sum_probs=220.8
Q ss_pred HHHHCCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCC
Q ss_conf 99968920022998999998514-98189998437876202434-89999999999859849999826011144889886
Q gi|254780949|r 11 ILSERGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRD 88 (418)
Q Consensus 11 ~L~~Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~-l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~ 88 (418)
+|..|+..+++..+|++.+++.+ +++++|+||+|||+ +|||| +++++.+++||++|+.++++|||+|+++|||+|++
T Consensus 8 ~l~~~~~~~e~~~~e~l~~~l~~~~~~~iy~G~~PTG~-lHLGh~l~~~~~~~~lq~~g~~~~i~IaD~~a~~~~~~~~~ 86 (375)
T 2cyc_A 8 NLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGD 86 (375)
T ss_dssp HHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSC-CBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGC
T ss_pred HHHHCCCCHHCCCHHHHHHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCC
T ss_conf 99973782423899999999857999679973488887-63075899999999999779977999658030205885456
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHHH-HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 210246889999999-999999887-653267776402330167523431346888752234478753478888740356
Q gi|254780949|r 89 ESRRMMRSQEIQENI-EKIKGIFSS-FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE 166 (418)
Q Consensus 89 ~~R~~l~~~~i~~n~-~~~~~q~~~-~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~ 166 (418)
.++ +++.. ..+...+.. ++-++-++.++.|+.|++|.....+..++..+++++++++|.+..+++.|...
T Consensus 87 ~e~-------~~~~~~~~~~~~~~~~~~a~G~dp~k~~i~~qS~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 158 (375)
T 2cyc_A 87 LEV-------IQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMG- 158 (375)
T ss_dssp HHH-------HHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCC-
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-
T ss_conf 889-------999999999999999999939890044899625434313699999997231059999862466633126-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCC---------EEEEEECEEECCC----
Q ss_conf 883157889898989999999854297020154125889988899997316797---------1798311023687----
Q gi|254780949|r 167 QSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPK---------LFALTSPLLTTAS---- 233 (418)
Q Consensus 167 ~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~---------~~glT~PLLt~~d---- 233 (418)
.++++.+|+||+|||+|++++ +++++.||.|||.|+..+||+++|++... ...+..|.+.+..
T Consensus 159 ~~~~~g~~~YP~lQaaDil~~----~~~~vpvG~DQ~~~~~l~rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gL~~~~~ 234 (375)
T 2cyc_A 159 EAIDFAKLIYPMMQVADIFYQ----GVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPK 234 (375)
T ss_dssp TTCBTHHHHHHHHHHHHHHHT----TCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSS
T ss_pred CCCCCCEECCCHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 675401001312656679886----3022555520258999999999983887665556655312211445557666432
Q ss_pred --------------CHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHH-------CHHHHHHHHHHH---------------
Q ss_conf --------------102235431-0123334579979999988620-------788898799750---------------
Q gi|254780949|r 234 --------------GTKMGKTLS-GAIWLNKEMTSPYNFWQYWRNI-------DDADVVSFAKRL--------------- 276 (418)
Q Consensus 234 --------------G~KmgKS~~-naIwLd~~~tSPy~fyQf~~n~-------~D~dV~kyLklf--------------- 276 (418)
|.|||||.+ ++|+|. .+|.+...++++. .+..+..+....
T Consensus 235 ~~~~~~~~~~~~~~~~KMSkS~~~s~I~L~---Dtpe~I~kKI~ka~td~~~~~~n~~~~~~~~~~~~~~~~~~~i~~~~ 311 (375)
T 2cyc_A 235 WPIESEEEFKEIKAQMKMSKSKPYSAVFIH---DSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPA 311 (375)
T ss_dssp SSCCSHHHHHHHHHHHBGGGSCGGGSCBTT---CCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTTTSSSSCCEEECCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCCCCEECHH
T ss_conf 333222234566677767668988867611---89999999987520798766678751223203025755553120287
Q ss_pred ---CCCCHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHH
Q ss_conf ---688856755543332---10220268898999999730
Q gi|254780949|r 277 ---TTLPMSEIDRMAKLQ---GKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 277 ---T~l~l~EI~~l~~~~---~~~pr~aKk~LA~EiT~lvH 311 (418)
.....++.+++++.- +-++.++|+.||+.|+.++-
T Consensus 312 ~~~~~~~~~~~eel~~~~~~G~l~~~dlK~~lae~i~~~l~ 352 (375)
T 2cyc_A 312 KFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352 (375)
T ss_dssp GGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64376666769999999865998999999999999999869
No 18
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYB; 2.2A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=2.4e-42 Score=298.19 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=224.5
Q ss_pred CCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCC
Q ss_conf 8920022998999998514-9818999843787620243489-9999999998598499998260111448898862102
Q gi|254780949|r 15 RGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLT-QLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRR 92 (418)
Q Consensus 15 Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~-~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~ 92 (418)
.|.+++++.+++|.+++.+ +++++|+|||||| +|||||++ +++.+++||++||.++++|||+||++|||++.+.
T Consensus 19 ~~~~~e~~~~d~l~~~l~~~~~~~vy~G~~PTG-~lHLG~~l~~i~~~~~~q~~g~~~~iliaD~~a~~~~~~~~~~--- 94 (348)
T 2j5b_A 19 LSIAEECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDI--- 94 (348)
T ss_dssp HTTCSEESCHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCH---
T ss_pred HCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCH---
T ss_conf 654364089999999995799977997558887-5551768999999999986699769998570998688757659---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 468899999999999998876532677764023301-6752343134688875223447875347888874035688315
Q gi|254780949|r 93 MMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNN-ETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSF 171 (418)
Q Consensus 93 ~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N-~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~ 171 (418)
+++..|...+...+..+ +-++.++.++.+ ..|.....+++++..+++++++++|.+...++.|-. +.++++
T Consensus 95 ----~~i~~~~~~~~~~~~A~---G~dp~k~~~~~qs~~~~~~~~~~~l~~~ls~~~~~~~l~~~~~~~~~~~-~~~~~~ 166 (348)
T 2j5b_A 95 ----NKIRELGRYFIEVFKAC---GINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNE-SDCLKA 166 (348)
T ss_dssp ----HHHHHHHHHHHHHHHHT---TCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred ----HHHHHHHHHHHHHHHHC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCC
T ss_conf ----99999999999999980---8995530899647876520248999999844326432430588986531-267763
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCC--CH-HHHHHHHCCCCCC
Q ss_conf 78898989899999998542970201541258899888999973167971798311023687--10-2235431012333
Q gi|254780949|r 172 LEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTAS--GT-KMGKTLSGAIWLN 248 (418)
Q Consensus 172 ~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~d--G~-KmgKS~~naIwLd 248 (418)
.||+||+|||||++++... +++++.+|.||+.+...++++..+.+.++...+++|.+...+ |. ||++|.+|+|.|+
T Consensus 167 ~~~~YPllqAaDil~l~~~-~~d~~~~g~dqr~~~~~~r~~~~~~~~~~~~~~~~~~~~~L~~~~~kmsss~~~~~I~l~ 245 (348)
T 2j5b_A 167 SQIFYPCMQAADVFELVPE-GIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp --CCHHHHHHHHHHHSSTT-CCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred CEECCHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 2003315666677740344-455420178779999999864021056753011022223568743344567887555510
Q ss_pred CCCCCHHHHHHHHHHHC--------------HHHHHHHHHHHCCCCH--HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45799799999886207--------------8889879975068885--675554333-210220268898999999730
Q gi|254780949|r 249 KEMTSPYNFWQYWRNID--------------DADVVSFAKRLTTLPM--SEIDRMAKL-QGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 249 ~~~tSPy~fyQf~~n~~--------------D~dV~kyLklfT~l~l--~EI~~l~~~-~~~~pr~aKk~LA~EiT~lvH 311 (418)
.+|-+.+.++++.- .-++..|+..+.+.+. ++++++++. .+-+|.++|+.||+.|++++.
T Consensus 246 ---D~~~~i~~KI~ka~td~~~~~n~~~~~~~~~~~~~~~~~nl~~~~~~~~eel~~~~~~~~~~dlK~~la~~i~~~l~ 322 (348)
T 2j5b_A 246 ---DTEQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTIID 322 (348)
T ss_dssp ---CCHHHHHHHHHHSCCCSSSTTCHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---58678998775033788777788655310021300314531452176799999997799989999999999999889
Q ss_pred H
Q ss_conf 0
Q gi|254780949|r 312 G 312 (418)
Q Consensus 312 G 312 (418)
.
T Consensus 323 p 323 (348)
T 2j5b_A 323 L 323 (348)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 19
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=5.3e-42 Score=295.88 Aligned_cols=297 Identities=13% Similarity=0.142 Sum_probs=231.4
Q ss_pred HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE-EEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899-9998514981899984378762024348999999999985984-99998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHK-PISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~-~i~liG~~T~~IGDPsgk~~ 89 (418)
+..||++-.--+-+. |+.+-+++++.+|+||+|||++|||||+++++++++||++||. ++++++|..+. .
T Consensus 78 ~~rRgi~f~hrd~d~il~~~~~g~~f~iytG~~PSg~~lHLGh~l~~~~~k~~Q~~~~~~v~i~iaD~~a~--------~ 149 (432)
T 2ip1_A 78 FLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKF--------L 149 (432)
T ss_dssp HHHTTSEEEEESHHHHHHHHHHTCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHH--------H
T ss_pred HHCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH--------C
T ss_conf 10255655236799999999749985999472799962149999999999999976798505897234763--------6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
.|+.++.+++.+|+..+..++-.+ +-++.+..|+.|++|...+.+..+++ ++++.|+++|.++..+. ..+
T Consensus 150 ~~~~~s~e~i~~~~~e~~~~ilA~---G~Dp~kt~i~~~s~~~~~~~~~~~~~-l~k~~t~~~~~~~~~~~------~~~ 219 (432)
T 2ip1_A 150 FKHKLTINDVKNFARENAKDIIAV---GFDPKNTFIFSDLQYMGGAFYETVVR-VSRQITGSTAKAVFGFN------DSD 219 (432)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTT---TCCGGGEEEEEHHHHCSHHHHHHHHH-HHTSCCHHHHHHTTCCC------TTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC------CCC
T ss_conf 477899999999999999999980---85934359997016665779999997-51544235788877513------555
Q ss_pred CHHHHHHHHHHHHHHHHHH-------HHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC--HHHHHH
Q ss_conf 1578898989899999998-------5429702015412588998889999731679717983110236871--022354
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELA-------KNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG--TKMGKT 240 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~-------~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG--~KmgKS 240 (418)
++..|.||+|||+|+++.. ....++++.||.|||.|+..+||+++|++..+...+++|++.+.+| .|||||
T Consensus 220 n~g~~~yP~lQaAdil~~~~~~~~~~~~~~~~lvPvG~DQ~~hi~ltRdia~r~~~~~p~~i~~~~l~~L~g~~~KMSkS 299 (432)
T 2ip1_A 220 CIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSAS 299 (432)
T ss_dssp CHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------
T ss_pred CCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 42224672576767774010444054445687665245478999999999985246887321465533567632345567
Q ss_pred HH-CCCCCCCCCCCHHHHHHHHHHH-------------------CHHHHHHHHHHHCCCCHHHHHHHHHHH---HCCCCH
Q ss_conf 31-0123334579979999988620-------------------788898799750688856755543332---102202
Q gi|254780949|r 241 LS-GAIWLNKEMTSPYNFWQYWRNI-------------------DDADVVSFAKRLTTLPMSEIDRMAKLQ---GKEINE 297 (418)
Q Consensus 241 ~~-naIwLd~~~tSPy~fyQf~~n~-------------------~D~dV~kyLklfT~l~l~EI~~l~~~~---~~~pr~ 297 (418)
.. ++|||+ ++|-+.+.+.++. +...+..||+.|+. +-++++++.+.- +-.+.+
T Consensus 300 ~~~s~I~L~---D~pe~I~kKI~ka~td~g~~t~ee~~~~gg~p~~~~v~~~l~~f~~-dd~~leei~~~y~~G~l~~gd 375 (432)
T 2ip1_A 300 DDTTAIFMT---DTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKD-DDVFLKECYDKYKSGELLSGE 375 (432)
T ss_dssp CGGGCCBTT---CCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHH
T ss_pred CCCCEEECC---CCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHH
T ss_conf 765478736---8999999874547727998744440005898305189999998669-868999999998559989899
Q ss_pred HHHHHHHHHHHHH--HHHCHHHHHHHHHHHHCCCC
Q ss_conf 6889899999973--00000467999864310257
Q gi|254780949|r 298 AKKIIATEITTMV--HGREEAEKAATAAMECFDMS 330 (418)
Q Consensus 298 aKk~LA~EiT~lv--HGe~~a~~A~~~s~~lF~~~ 330 (418)
+|+.||+.+++++ |.+.-++......+..+...
T Consensus 376 lKk~lae~l~~~l~~~rerr~~~~d~~~~~~~~~~ 410 (432)
T 2ip1_A 376 MKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPH 410 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999989999999998887799872735
No 20
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.8e-41 Score=292.38 Aligned_cols=284 Identities=10% Similarity=0.054 Sum_probs=222.3
Q ss_pred HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899-9998514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
+..||++-.--+-+. |+..-++++..+|.|++|||+ +||||+++++.+++||+. |+.++++|+|+++...+
T Consensus 58 ~~rRgi~f~hrDld~il~~~~~gk~~~vytG~~PSG~-lHLGh~i~~~~~k~lQ~~~~~~v~I~iaD~~a~~~~------ 130 (386)
T 3hzr_A 58 YLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNR------ 130 (386)
T ss_dssp HHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECCCSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTT------
T ss_pred HEECCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCC------
T ss_conf 0034455432679999999974998489948688737-089899999999999976797599997447872478------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
.++.+++.+|+..+..+ ++..+-++.++.|++|++|+..+.. .++ .++++.|+++|. .++..+...
T Consensus 131 ---~~~~ee~~~~~~e~~~~---~lA~G~DpeKt~i~~qs~~~~~~~~-~~~-~l~k~~t~~~~k------~~~~~~~~~ 196 (386)
T 3hzr_A 131 ---EATINEASKMSNDLMKY---ILAFGFNEDKTFIYTDYQYFGKMYR-TIS-LVEKATAYNVVQ------PFFNFEYSD 196 (386)
T ss_dssp ---SCCHHHHHHHHHHHHHH---HHHTCCCGGGEEEEEHHHHHHHHHH-HHH-HHHHHCBHHHHT------TTSCCCSSS
T ss_pred ---CCCHHHHHHHHHHHHHH---HHHHCCCCCCEEEEEECHHCHHHHH-HHH-HHHCCCCCCHHH------HHHCCCCCC
T ss_conf ---89999999999999999---9995889472289982520006589-999-995873505254------651676667
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-----CCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC-HHHHHHH-H
Q ss_conf 157889898989999999854-----29702015412588998889999731679717983110236871-0223543-1
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKN-----YDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG-TKMGKTL-S 242 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~-----~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG-~KmgKS~-~ 242 (418)
++.+|+||+|||+|++++..+ ..+.+..+|.|||.|+..+||+.+|++..+...+..|++++.+| .|||||. +
T Consensus 197 n~g~~~YP~lQaaDil~~~~~~~~g~~~~~lVPvG~DQ~~~~~ltRdia~r~~~~~p~~i~~~~lpgL~G~~KMSsS~~~ 276 (386)
T 3hzr_A 197 NIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDH 276 (386)
T ss_dssp BHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTT
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 77520460988888876068054178753030577345999999999998635688702125544567887654568998
Q ss_pred CCCCCCC----------------CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCHHHHHHH
Q ss_conf 0123334----------------579979999988620788898799750688856755543332-1--02202688989
Q gi|254780949|r 243 GAIWLNK----------------EMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ-G--KEINEAKKIIA 303 (418)
Q Consensus 243 naIwLd~----------------~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~-~--~~pr~aKk~LA 303 (418)
++|||+. .+.++++..+++-|.++..+..||++|+. +-+|++++.+.- + -++.++|+.||
T Consensus 277 s~I~L~D~p~~I~kKI~k~a~sgg~~t~ee~~~~gg~p~~~~v~~~l~~f~~-dd~eleei~~~y~~G~l~~gelK~~la 355 (386)
T 3hzr_A 277 NSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSS-DNAQVKDVEEKYSKGELLSGELKKIVS 355 (386)
T ss_dssp TSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCS-CHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 6257507989998874525327987750333314999752489999998648-876999999999659989899999999
Q ss_pred HHHHHHHHHHCHHH
Q ss_conf 99999730000046
Q gi|254780949|r 304 TEITTMVHGREEAE 317 (418)
Q Consensus 304 ~EiT~lvHGe~~a~ 317 (418)
++|+++++...+..
T Consensus 356 e~i~~~l~~~qerr 369 (386)
T 3hzr_A 356 ASMKDFIVAYDAKK 369 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 21
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-40 Score=286.01 Aligned_cols=258 Identities=17% Similarity=0.189 Sum_probs=208.6
Q ss_pred CCEEEEEEECCCCCCCCHHHHHH-HHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98189998437876202434899-99999999859849999826011144889886210246889999999999999887
Q gi|254780949|r 34 GVVTAYIGYDLTASSLHAGHLTQ-LMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSS 112 (418)
Q Consensus 34 ~~~~~y~G~DpT~~slH~G~l~~-~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~ 112 (418)
..+++|.||+|||+ +||||+++ +..+++||++||+++++|||+||++|||++.++.| .+. ++.+..
T Consensus 11 ~~~ri~tG~~PTG~-lHlG~~i~~i~~~~~lq~~g~~~~~~iaD~ha~~~~~~~~~~~~---------~~~---~~~~~~ 77 (340)
T 2g36_A 11 HHMRILSGMRPTGK-LHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLK---------EYT---RDLVRG 77 (340)
T ss_dssp -CCEEEEEECCCSS-CBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHH---------HHH---HHHHHH
T ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEECCHHEECCCCCCHHHHH---------HHH---HHHHHH
T ss_conf 44536656188971-45887899999999999769949999723010148999999999---------999---999999
Q ss_pred HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65326777640233016752343134688875223447875347888874035688315788989898999999985429
Q gi|254780949|r 113 FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYD 192 (418)
Q Consensus 113 ~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~ 192 (418)
++..+-.+....+..+++|.....+..++..+....++++|.....++.|.......+..+|+||+|||+|++++ +
T Consensus 78 ~~a~g~~p~k~~i~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~YP~lqaaDil~~----~ 153 (340)
T 2g36_A 78 FLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILIY----K 153 (340)
T ss_dssp HHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHTT----T
T ss_pred HHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC----C
T ss_conf 998268987349997013667788999998520157777534542100001457776534344755531023422----5
Q ss_pred CCEECCCCHHHHHHHHHHHHHHHCCC--------CCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 70201541258899888999973167--------9717983110236871022354310123334579979999988620
Q gi|254780949|r 193 CRLQMGGSDQWGNIICGIDLGERLKT--------PKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNI 264 (418)
Q Consensus 193 ~~iqiGGsDQwgNi~~G~eLir~~~~--------~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~ 264 (418)
+++..+|.||+.++..+||+.++.+. .+++..+.|+|++++|.|||||.+|+|||+ +||-+...+.++.
T Consensus 154 ~~~v~~G~DQ~~~~~l~R~ia~k~n~~~~~~~~~p~~~~~~~~~l~~~~g~KmSkS~~~~I~l~---D~~~~i~kKI~ka 230 (340)
T 2g36_A 154 AEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE---ISEKELEQTILRM 230 (340)
T ss_dssp CSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT---CCHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC---CCHHHHHHHHHEE
T ss_conf 7777663778999999999999876520334678631012356789999997888745555202---7657887765510
Q ss_pred ---------------CHHHHHHHHHHHCCCCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---------------78889879975068885675554333---2102202688989999997300
Q gi|254780949|r 265 ---------------DDADVVSFAKRLTTLPMSEIDRMAKL---QGKEINEAKKIIATEITTMVHG 312 (418)
Q Consensus 265 ---------------~D~dV~kyLklfT~l~l~EI~~l~~~---~~~~pr~aKk~LA~EiT~lvHG 312 (418)
....+..|+.+| ..+.++++++... .+-++.++|+.||+.+++.+.-
T Consensus 231 ~td~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~dlK~~lae~li~~L~p 295 (340)
T 2g36_A 231 MTDPARVRRSDPGNPENCPVWKYHQAF-DISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAP 295 (340)
T ss_dssp CCCTTCSSTTSCCCGGGCHHHHHHHHT-TCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 469723404688875200599999860-87377899999865417978899999999999999789
No 22
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.1e-37 Score=263.02 Aligned_cols=280 Identities=12% Similarity=0.104 Sum_probs=209.8
Q ss_pred HHHCCCHHHCCCHHHHHH-HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899999-8514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRELDI-LCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~l~~-~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
+..||++-.-.+-+.+-+ +-++++..+|+||+|||+ +||||++++++++++|+. |+.++++++|.++...++.
T Consensus 49 ~~rRgi~f~hrd~d~il~~~~~g~~~~vytG~~PSG~-lHLGh~i~~~~~~~~q~~~~~~~~i~iaD~~~~~~~~~---- 123 (392)
T 3jxe_A 49 FFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN---- 123 (392)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCSSC-CBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSS----
T ss_pred HHHCCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCC----
T ss_conf 6752502003689999999972998089968689837-48998999999999997169866999961277652579----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
.+.+++..++.. .+..++..+-++.++.|..+++|.. +.+.. +.++++.....++.++.-..++
T Consensus 124 ----~~~~~~~~~~~e---~~~~~lA~GlDp~kt~i~~~s~~~~---~~~l~------~~l~~~~~~~~~~~~~~~~~~~ 187 (392)
T 3jxe_A 124 ----LTFDDTKRWAYD---NILDIIAVGFDPDKTFIFQNSEFTK---IYEMA------IPIAKKINFSMAKAVFGFTEQS 187 (392)
T ss_dssp ----CCHHHHHHHHHH---HHHHHHTTCCCTTSEEEEETTTSTH---HHHHH------HHHHHHSBHHHHHHHHCCCTTS
T ss_pred ----CCHHHHHHHHHH---HHHHHHHCCCCCCCEEEEECCCCHH---HHHHH------HHHHHHCCHHHHHHCCCCCCCC
T ss_conf ----999999999999---9999998089920359997131157---78887------8898515516665311244455
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC---HHHHHHHHCCCC
Q ss_conf 15788989898999999985429702015412588998889999731679717983110236871---022354310123
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG---TKMGKTLSGAIW 246 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG---~KmgKS~~naIw 246 (418)
++.+|+||+|||+|.++++.+ ++..||.||+.++..+||+++|++..+...++.|++.+..| +|++++.+|+|+
T Consensus 188 ~~g~~~YP~lQaaDil~~~~~---~~VPvG~DQ~~h~~LtRdia~r~n~~~~~~~~~~~ip~l~G~~gKmssS~~~s~I~ 264 (392)
T 3jxe_A 188 KIGMIFFPAIQIAPTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY 264 (392)
T ss_dssp BHHHHHHHHHHHGGGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCB
T ss_pred CCCCCCCCHHHHCCHHCCCCC---EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 655446703332320113567---06324477789999999999752788873345432335688766665467888745
Q ss_pred CCC----------------CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCHHHHHHHHHHH
Q ss_conf 334----------------579979999988620788898799750688856755543332-1--022026889899999
Q gi|254780949|r 247 LNK----------------EMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ-G--KEINEAKKIIATEIT 307 (418)
Q Consensus 247 Ld~----------------~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~-~--~~pr~aKk~LA~EiT 307 (418)
|.. ...++++.++++-|.++..|..|+++|+..+.++++++.+.- + -.+.++|+.||+.|+
T Consensus 265 L~D~pe~i~~KI~k~~~~~g~~~~~e~~~~~g~p~~~~v~~~l~~f~~~d~~~l~e~~~~y~~G~l~~ge~K~~lae~l~ 344 (392)
T 3jxe_A 265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQ 344 (392)
T ss_dssp TTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 05899999999974137899860001100368843347999999873899999999999875489898999999999999
Q ss_pred HHHHHHCH
Q ss_conf 97300000
Q gi|254780949|r 308 TMVHGREE 315 (418)
Q Consensus 308 ~lvHGe~~ 315 (418)
++++.-..
T Consensus 345 ~~l~~~~e 352 (392)
T 3jxe_A 345 EFLKEHQR 352 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99899999
No 23
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8}
Probab=100.00 E-value=6.8e-35 Score=249.02 Aligned_cols=252 Identities=13% Similarity=0.171 Sum_probs=196.9
Q ss_pred EEEEEEECCCCCCCCHHHHHHHH--HHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 18999843787620243489999--9999998598499998260111448898862102468899999999999998876
Q gi|254780949|r 36 VTAYIGYDLTASSLHAGHLTQLM--LLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSF 113 (418)
Q Consensus 36 ~~~y~G~DpT~~slH~G~l~~~~--~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~ 113 (418)
.+++.||+|||. +||||+++.+ .++.+|++||+++++|+|+|++++||+++.+++...+.+.+..+ +..-
T Consensus 2 ~ri~tG~~PSG~-~HlGh~l~~i~~~~~lq~~~g~~~~~~IaD~ha~~~~~~~d~~~~~~~~~~~~~~~-------~a~g 73 (337)
T 2el7_A 2 KRVLSGIQPSGE-IHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVN-------IAAG 73 (337)
T ss_dssp CCEEEEECSCSC-CBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHH-------HHHT
T ss_pred CEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEECCCCCCCHHHHHHHHHHHHHHH-------HHHC
T ss_conf 856778388985-72887799999999999974990999983320132899999899999799999999-------9844
Q ss_pred HHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 53267776402330167523431346888752234478753478888740356883157889898989999999854297
Q gi|254780949|r 114 IKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDC 193 (418)
Q Consensus 114 ~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~ 193 (418)
+ ++..+.+..+++|-....+.- .+....++++|.+...++.+...+..+++.+|+||+|||+|.+++ +.
T Consensus 74 ~----dp~~~~i~~qs~~~~~~el~~---~~~~~~~~~~l~r~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~----~~ 142 (337)
T 2el7_A 74 L----DPEKVTLFVQSHVPEHTELSW---VFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILIY----KA 142 (337)
T ss_dssp C----CTTTSEEEEGGGSTHHHHHHH---HHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHHT----TC
T ss_pred C----CCCCEEEEEHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHH----CC
T ss_conf 7----864349974454588899999---998461499999777654441247787601102338762470542----49
Q ss_pred CEECCCCHHHHHHHHHHHHHHHCCC---------CCEEEEEECEEECCCCH-HHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0201541258899888999973167---------97179831102368710-2235431012333457997999998862
Q gi|254780949|r 194 RLQMGGSDQWGNIICGIDLGERLKT---------PKLFALTSPLLTTASGT-KMGKTLSGAIWLNKEMTSPYNFWQYWRN 263 (418)
Q Consensus 194 ~iqiGGsDQwgNi~~G~eLir~~~~---------~~~~glT~PLLt~~dG~-KmgKS~~naIwLd~~~tSPy~fyQf~~n 263 (418)
++..||.||.-++...||+.+|++. ........|.+.+.+|. |||||.+|+|.|+ +||.+...+.++
T Consensus 143 d~vpvG~DQ~~~~~l~Rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gl~g~~kmSks~~~~I~l~---D~~~~i~kKI~k 219 (337)
T 2el7_A 143 DTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLL---EPEESIWQKIQH 219 (337)
T ss_dssp CEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSS---SCHHHHHHHHHT
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHHC
T ss_conf 86233711689999738999999987242568762000222220327787542257777753013---780566424310
Q ss_pred HCHH---------------HHHHHHHHHCCCCHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 0788---------------8987997506888567555433---3210220268898999999730
Q gi|254780949|r 264 IDDA---------------DVVSFAKRLTTLPMSEIDRMAK---LQGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 264 ~~D~---------------dV~kyLklfT~l~l~EI~~l~~---~~~~~pr~aKk~LA~EiT~lvH 311 (418)
..++ .+..++..++ +.+.++++.. ..+-++.++|+.||+.|++.+-
T Consensus 220 a~td~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~e~~~~~y~~g~~~~~dlK~~lae~l~~~l~ 283 (337)
T 2el7_A 220 LPDDPQRIRLSDPGDPERTILFTYLSYFA--PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALR 283 (337)
T ss_dssp CCCCC-------------CHHHHHHHHHS--CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77686543356888720328999998717--75311148999874798778999999999999868
No 24
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Probab=100.00 E-value=1.1e-31 Score=227.78 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=192.2
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHH-HHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 981899984378762024348999-9999999859849999826011144889886210246889999999999999887
Q gi|254780949|r 34 GVVTAYIGYDLTASSLHAGHLTQL-MLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSS 112 (418)
Q Consensus 34 ~~~~~y~G~DpT~~slH~G~l~~~-~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~ 112 (418)
..+++|.||+|||. +||||+++. ..+.++|+ ||+++++|+|+++++.|++ .++++.|+..... .
T Consensus 2 ~~~rv~tG~~PSG~-~HlG~~lg~i~~~~~lQ~-~~~~~~~iaD~ha~~~~~~----------~~~l~~~~~~~~~---~ 66 (322)
T 3m5w_A 2 NAMRVLTGLQPSGD-LHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQD----------GEKLKQNSLKAAA---A 66 (322)
T ss_dssp -CCCBEEEECCSSC-CBHHHHHHTHHHHHHTTT-TSCCEEEECTTTHHHHCCC----------HHHHHHHHHHHHH---H
T ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHCCCCC----------HHHHHHHHHHHHH---H
T ss_conf 97626765078970-547878999999999871-6988999931416116979----------9999999999999---9
Q ss_pred HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65326777640233016752343134688875223447875347888874035688315788989898999999985429
Q gi|254780949|r 113 FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYD 192 (418)
Q Consensus 113 ~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~ 192 (418)
++-.+-.+.+..++.++++ .... ++.-.+....+++++.+...++.|...+..+++.+|+||+|||.|.+++ +
T Consensus 67 ~~a~G~dp~k~~i~~qs~~-~~~~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~YP~lqaaDil~~----~ 139 (322)
T 3m5w_A 67 FLSLGIDPQKSVFWLQSDV-KEVM--ELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILLF----D 139 (322)
T ss_dssp HHHTTCCTTTSEEEEGGGC-THHH--HHHHHHHHTCBHHHHHTCHHHHC-------CBHHHHHHHHHHHHHHHHT----T
T ss_pred HHHCCCCCCCEEEEECCCC-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH----C
T ss_conf 9982899985799988850-5678--9999998861148987633311110344676504017777774456762----7
Q ss_pred CCEECCCCHHHHHHHHHHHHHHHCCCC---------CEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 702015412588998889999731679---------71798311023687102235431012333457997999998862
Q gi|254780949|r 193 CRLQMGGSDQWGNIICGIDLGERLKTP---------KLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRN 263 (418)
Q Consensus 193 ~~iqiGGsDQwgNi~~G~eLir~~~~~---------~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n 263 (418)
+++..||.||..++...||+.+|++.. +...-+.+++.+.+|.|||||.+|+|.|+ +||-+.+.+.++
T Consensus 140 ~~~vpvG~DQ~~h~~ltRdia~k~n~~~~~~~~~p~~~~~~~~~~~~~~~~~KMSkS~~n~I~l~---D~~~~I~kKI~k 216 (322)
T 3m5w_A 140 TRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIF---SSEKTLKKQISS 216 (322)
T ss_dssp CSEEECCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEEEC----CCCBCTTSSBCCGGGTCCCBSS---SCHHHHHHHHHT
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHC
T ss_conf 86222265518999999999999875537654432001343200036899986777888755355---688899886650
Q ss_pred HCHH-------------HHHHHHHHHCCCCHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 0788-------------8987997506888567555433---3210220268898999999730
Q gi|254780949|r 264 IDDA-------------DVVSFAKRLTTLPMSEIDRMAK---LQGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 264 ~~D~-------------dV~kyLklfT~l~l~EI~~l~~---~~~~~pr~aKk~LA~EiT~lvH 311 (418)
...+ .|..++.++... ++.++++. ..+..+.+.|+.||+.|.+++-
T Consensus 217 a~td~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~~~~~~~~~g~~~~gdlK~~Lae~l~~~L~ 278 (322)
T 3m5w_A 217 IVTDSTALEDPKDHENCNIFKIAKLFLDE--SGQKELQIRYEKGGEGYGHFKIYLNELVNAYFK 278 (322)
T ss_dssp CCCCCCCTTSCCCSTTCHHHHHHGGGCCH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 44788886589865566610044313553--422399999997799789999999999999868
No 25
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.4e-30 Score=220.58 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=218.9
Q ss_pred HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899-9998514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
|..||+|-.--+-+. |+..-++++..+|.||+||+.++||||+++++.+++||+. |..+++.|+|.++.+.++
T Consensus 67 ~~rRgi~f~hrd~d~il~~~~~g~pf~v~tG~~PsSG~~HLGh~~~~~~~~~lQd~~~~~~~i~iaD~ea~~~~~----- 141 (451)
T 3foc_A 67 MLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNR----- 141 (451)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCT-----
T ss_pred HHCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCC-----
T ss_conf 011556530368999999997599849997988998975399999999999998757997899972478840488-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
-++.++++.++..+ +..++..+-++.+..|..+++|..-..+.+++..+++..++++|.+.-.| ....
T Consensus 142 ---~~~~e~~~~~~~e~---~~~~iA~G~Dp~kt~if~qS~~~~v~~~~~l~~~l~~~~t~~el~~~~gf------~~~~ 209 (451)
T 3foc_A 142 ---SLSYAEVDSYTREN---IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF------SNDA 209 (451)
T ss_dssp ---TCCHHHHHHHHHHH---HHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC------CSSS
T ss_pred ---CCCHHHHHHHHHHH---HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC------CCCC
T ss_conf ---99999999999999---99999957790233999916003137899999999570564467662056------8777
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------CCCC
Q ss_conf 157889898989999999854-------------------------------------------------------2970
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKN-------------------------------------------------------YDCR 194 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~-------------------------------------------------------~~~~ 194 (418)
++..|.||++||.|.++-... ...+
T Consensus 210 nig~~~yP~~Qaadil~~~~~~~~~~~~~vpv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (451)
T 3foc_A 210 NVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMC 289 (451)
T ss_dssp CHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEE
T ss_pred CCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 56411450765423432023345766434442125567888876654311332100102467766665300122101122
Q ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHHHHHC-CCCCCCCCCCHHHHHHHHHHH-------
Q ss_conf 20154125889988899997316797179831102368710--22354310-123334579979999988620-------
Q gi|254780949|r 195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGKTLSG-AIWLNKEMTSPYNFWQYWRNI------- 264 (418)
Q Consensus 195 iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgKS~~n-aIwLd~~~tSPy~fyQf~~n~------- 264 (418)
+..+|.||.-++...||+.+|++..+...++.|.+++.+|. |||||..| +|+|+ .||-+.+.+.++.
T Consensus 290 lvp~G~DQ~~~~~ltRdia~r~~~~~p~~~~~~~lpgL~G~~~KMSkS~pnS~I~L~---D~pe~I~kKI~k~A~tgg~~ 366 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT---DTPAQIKNKINRYAFSGGRD 366 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT---CCHHHHHHHHHHHSCCCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCC
T ss_conf 013645789999999999998389988025037766778987765678998633405---89899999886440389988
Q ss_pred -----------CH-HHHHHHHHHHCCCCHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----------78-8898799750688856755543332--1-022026889899999973000
Q gi|254780949|r 265 -----------DD-ADVVSFAKRLTTLPMSEIDRMAKLQ--G-KEINEAKKIIATEITTMVHGR 313 (418)
Q Consensus 265 -----------~D-~dV~kyLklfT~l~l~EI~~l~~~~--~-~~pr~aKk~LA~EiT~lvHGe 313 (418)
+| ..+..|+..|.. +-++++++.+.- + -.+.+.|+.||+.+++++..-
T Consensus 367 t~ee~r~~gg~p~~~~~~~~l~~f~~-dD~~leei~~~y~~G~l~~ge~K~~lae~l~~~L~~~ 429 (451)
T 3foc_A 367 TEEEHRAFGADLSVDVSVRYLEVFMK-DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEH 429 (451)
T ss_dssp SHHHHHTTCCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 65300104999663069999999849-9358999999986389898999999999999998999
No 26
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.97 E-value=1.8e-29 Score=213.27 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=182.9
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHH
Q ss_conf 49818999843787620243489999999-999859849999826011144889886210246889999999999-9998
Q gi|254780949|r 33 QGVVTAYIGYDLTASSLHAGHLTQLMLLF-WLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKI-KGIF 110 (418)
Q Consensus 33 ~~~~~~y~G~DpT~~slH~G~l~~~~~l~-~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~-~~q~ 110 (418)
..+.++|.||.|||. +||||+++.+... ++|+ |++++++|+|++++++++ .+.+++.+++..+ ...+
T Consensus 20 ~~~~rv~tG~~PSG~-~HlG~~l~~~~~~~~lQ~-~~~~~i~IaD~ha~t~~~---------~~~~~~r~~~~~~~~~~l 88 (351)
T 1yi8_B 20 PARPRVLTGDRPTGA-LHLGHLAGSLQNRVRLQD-EAELFVLLADVQALTDHF---------DRPEQVRENVLAVALDYL 88 (351)
T ss_dssp -CCSEEEEEECCSSC-CBHHHHHHTHHHHHHHTS-SSEEEEEECHHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHCCCC---------CCHHHHHHHHHHHHHHHH
T ss_conf 999989966388972-626878999999999875-798899981536761699---------999999999999999999
Q ss_pred HHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 876532677764023301675234313468887522344787534788887---40356883157889898989999999
Q gi|254780949|r 111 SSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRS---RLKREQSLSFLEFNYMILQAYDFVEL 187 (418)
Q Consensus 111 ~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~---Rl~~~~~is~~EF~Y~llQayD~~~L 187 (418)
..-+ ++.++.++.+++|.....+.-. +....++++|.+...++. |......++..+|+||+|||+|.+.+
T Consensus 89 A~G~----Dp~k~~i~~qS~~~~~~el~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDi~~~ 161 (351)
T 1yi8_B 89 AAGL----DPQKTTCVVQSAVPELAELTVY---FLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAF 161 (351)
T ss_dssp HHTC----CTTTEEEEEGGGCTHHHHHHHH---HHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHH
T ss_pred HCCC----CCCCCEEEECCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 8069----9310437735511357889999---98764452588878999863023666677734455508765146540
Q ss_pred HHHCCCCEECCCCHHHHHHHHHHHHHHHCCC--------CCEEEEEECEEECCCCH-HHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8542970201541258899888999973167--------97179831102368710-22354310123334579979999
Q gi|254780949|r 188 AKNYDCRLQMGGSDQWGNIICGIDLGERLKT--------PKLFALTSPLLTTASGT-KMGKTLSGAIWLNKEMTSPYNFW 258 (418)
Q Consensus 188 ~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~--------~~~~glT~PLLt~~dG~-KmgKS~~naIwLd~~~tSPy~fy 258 (418)
+.++..||.||..++...||+.++++. ++......|.+.+.+|. |||||.+|+|.|+ +||.+..
T Consensus 162 ----~~divpvG~DQ~~h~~LaRdia~~~n~~~~~~~~~P~~~~~~~~~l~gL~g~~KmSkS~~~~I~l~---D~~~~I~ 234 (351)
T 1yi8_B 162 ----GATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG---DSADEVA 234 (351)
T ss_dssp ----TCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT---CCHHHHH
T ss_pred ----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC---CCHHHHH
T ss_conf ----554467762379999999999999540047766786677641345657775011036853346778---9999999
Q ss_pred HHHHHH-CHH--------------HHHHHHHHHCCCCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 988620-788--------------89879975068885675554333---210220268898999999730
Q gi|254780949|r 259 QYWRNI-DDA--------------DVVSFAKRLTTLPMSEIDRMAKL---QGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 259 Qf~~n~-~D~--------------dV~kyLklfT~l~l~EI~~l~~~---~~~~pr~aKk~LA~EiT~lvH 311 (418)
.++++. .|. -+..++..|... ..+++++... .+-.+.++|+.||+.+.+.+-
T Consensus 235 kKI~ka~td~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~el~~~~~~g~~~~~~~K~~lae~l~~~l~ 304 (351)
T 1yi8_B 235 RKVMGMYTDPGHLRASDPGRVEGNPVFTFLDAFDPD-PARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLA 304 (351)
T ss_dssp HHHHTCCCCTTCCSTTSCCCCTTCTTHHHHHHHCSC-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 998712459998721014776510699998875355-2079999999985898989999999999999858
No 27
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=99.93 E-value=2.7e-24 Score=179.15 Aligned_cols=250 Identities=16% Similarity=0.191 Sum_probs=161.8
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81899984378762024348999999-99998598499998260111448898862102468899999999999998876
Q gi|254780949|r 35 VVTAYIGYDLTASSLHAGHLTQLMLL-FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSF 113 (418)
Q Consensus 35 ~~~~y~G~DpT~~slH~G~l~~~~~l-~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~ 113 (418)
..+||.||.|||. +||||+++++.. ..+|+ |++++++|+|+++++.|+ +.+.+..++.. .+..+
T Consensus 4 ~~rv~tG~~PSG~-~HLGh~i~~i~~~~~lQ~-~~~~~i~IAD~ha~~~~~----------~~~~~~~~~~~---~~~~~ 68 (348)
T 2yy5_A 4 MKRALTGIQASGK-QHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDF----------QPQALKQNNFD---LVRTL 68 (348)
T ss_dssp CCEEEEEECCCTT-CBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCC----------CHHHHHHHHHH---HHHHH
T ss_pred CCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHCCC----------CHHHHHHHHHH---HHHHH
T ss_conf 5604668378970-567769999999999966-698899973187761699----------89999999999---99999
Q ss_pred HHCCCCCCCCEEEEHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 53267776402330167523431-346888752234478753478888740-------3568831578898989899999
Q gi|254780949|r 114 IKYGTGKTDALMLNNETWLCSIK-YIDLLREIGSFFSVNRMLSFESVRSRL-------KREQSLSFLEFNYMILQAYDFV 185 (418)
Q Consensus 114 ~~~~~~~~~~~i~~N~~W~~~~~-~~~~lr~~g~~~~v~~mL~rd~v~~Rl-------~~~~~is~~EF~Y~llQayD~~ 185 (418)
+..+-.+....+...++ ..... +...+. ...++++|.+.-.++.+. .....++...|+||+|||.|.+
T Consensus 69 la~g~dp~~~~~~~qs~-~~~~~el~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDil 144 (348)
T 2yy5_A 69 LAVGLDPQKACLFLQSD-LLEHSMMGYLMM---VQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDIL 144 (348)
T ss_dssp HHTTCCTTTEEEEEGGG-CHHHHHHHHHHH---HHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCEEEECCC-CCCHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHCCHH
T ss_conf 98178855527973033-500688999983---32788999998876666643002445555643241048167520226
Q ss_pred HHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCC-------CCEEE------EEECEEEC-CCCHHHHHHHHCCCCCCCCC
Q ss_conf 998542970201541258899888999973167-------97179------83110236-87102235431012333457
Q gi|254780949|r 186 ELAKNYDCRLQMGGSDQWGNIICGIDLGERLKT-------PKLFA------LTSPLLTT-ASGTKMGKTLSGAIWLNKEM 251 (418)
Q Consensus 186 ~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~-------~~~~g------lT~PLLt~-~dG~KmgKS~~naIwLd~~~ 251 (418)
++ ++++..||.||.-++...||+.+|++. .+... ...|++.+ .+++|++++.+++|.|+
T Consensus 145 ~~----~~~~vp~G~DQ~~~~~ltRdia~kfn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kS~~~~~s~I~l~--- 217 (348)
T 2yy5_A 145 LY----QPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD--- 217 (348)
T ss_dssp TT----CCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT---
T ss_pred HH----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---
T ss_conf 41----78878787218999999999987502344544567732123320013567688767776678988668843---
Q ss_pred CCHHHHHHHHHHH-CH---------------HHHHHHHHHHCCCCHHHH--HHH----HHH-HHCCCCHHHHHHHHHHHH
Q ss_conf 9979999988620-78---------------889879975068885675--554----333-210220268898999999
Q gi|254780949|r 252 TSPYNFWQYWRNI-DD---------------ADVVSFAKRLTTLPMSEI--DRM----AKL-QGKEINEAKKIIATEITT 308 (418)
Q Consensus 252 tSPy~fyQf~~n~-~D---------------~dV~kyLklfT~l~l~EI--~~l----~~~-~~~~pr~aKk~LA~EiT~ 308 (418)
++|-+...+.++. .| ..+..++.+|...+..+- ++. +.. .+....++|+.||+.+.+
T Consensus 218 D~~~~I~kKI~ka~td~~~~~~~~~~~~p~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdlK~~lae~l~~ 297 (348)
T 2yy5_A 218 DPKEVVVKKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVN 297 (348)
T ss_dssp CCHHHHHHHHHTCCCCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87888999887356799888424666788657489899998366034457777656899887677799999999999999
Q ss_pred HH
Q ss_conf 73
Q gi|254780949|r 309 MV 310 (418)
Q Consensus 309 lv 310 (418)
++
T Consensus 298 ~l 299 (348)
T 2yy5_A 298 LL 299 (348)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 28
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A
Probab=99.92 E-value=4.7e-24 Score=177.48 Aligned_cols=253 Identities=16% Similarity=0.185 Sum_probs=182.5
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18999843787620243489999999999859849999826011144889886210246889999999999999887653
Q gi|254780949|r 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIK 115 (418)
Q Consensus 36 ~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~ 115 (418)
.++|.||-|||. +||||+++.++-....+.|++++++|.|++++...+ +.+++.+++.. .+..++-
T Consensus 2 krv~tG~~PSG~-~HlG~~~g~i~~~~~lq~~~~~~i~iAD~ha~~~~~----------~~~~l~~~~~~---~~~~~~A 67 (328)
T 1i6k_A 2 KTIFSGIQPSGV-ITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQ----------DPHELRQNIRR---LAALYLA 67 (328)
T ss_dssp CEEEEEECCCSC-CBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCC----------CHHHHHHHHHH---HHHHHHH
T ss_pred CEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCC----------CHHHHHHHHHH---HHHHHHH
T ss_conf 846857288870-378889999999999857998899963086640678----------99999999999---9999998
Q ss_pred CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 26777640233016752343134688875223447875347888874035688315788989898999999985429702
Q gi|254780949|r 116 YGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRL 195 (418)
Q Consensus 116 ~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~i 195 (418)
.+-++.+..++..+++-..-.+..++. ...+++.+.+.-.++.+.......++..|.||+|||-|.+++ +.++
T Consensus 68 ~G~dp~k~~i~~qs~~~~~~~l~~~~~---~~~~~~~~~r~~~~k~~~~~~~~~~~g~l~YP~lQaADIl~~----~~d~ 140 (328)
T 1i6k_A 68 VGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILLY----NTDI 140 (328)
T ss_dssp TTCCTTTEEEEEGGGCTHHHHHHHHHH---HHSCHHHHHTCHHHHHHHTTCSSCCHHHHTHHHHHHHHHHTT----TCSE
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHH----CCCC
T ss_conf 379987307985042355789999998---532478888764123221246788723237568762030631----8991
Q ss_pred ECCCCHHHHHHHHHHHHHHHCCCC--CEEEEEEC--------EEECCCC-HHHHHHHHC---CCCCCCCCCCHHHHHHHH
Q ss_conf 015412588998889999731679--71798311--------0236871-022354310---123334579979999988
Q gi|254780949|r 196 QMGGSDQWGNIICGIDLGERLKTP--KLFALTSP--------LLTTASG-TKMGKTLSG---AIWLNKEMTSPYNFWQYW 261 (418)
Q Consensus 196 qiGGsDQwgNi~~G~eLir~~~~~--~~~glT~P--------LLt~~dG-~KmgKS~~n---aIwLd~~~tSPy~fyQf~ 261 (418)
..||.||.-.+...||+.+|++.. ..+-...| ++...|| .||+||.++ +|.|. .||-+..++.
T Consensus 141 vpvG~DQ~~h~~ltRdia~k~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kmskS~~~~~~~I~l~---d~~~~i~kKi 217 (328)
T 1i6k_A 141 VPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL---DDAKTIEKKI 217 (328)
T ss_dssp EECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT---CCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHH
T ss_conf 5488026899999999998746524875677311356543456524898766776789855530365---8999999741
Q ss_pred HHH-CH------------HHHHHHHHHHCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 620-78------------889879975068885675554333-2102202688989999997300
Q gi|254780949|r 262 RNI-DD------------ADVVSFAKRLTTLPMSEIDRMAKL-QGKEINEAKKIIATEITTMVHG 312 (418)
Q Consensus 262 ~n~-~D------------~dV~kyLklfT~l~l~EI~~l~~~-~~~~pr~aKk~LA~EiT~lvHG 312 (418)
++. .| -.+...+.+|..++-++++++++. .+....++|+.||+.+.+.+-.
T Consensus 218 ~~a~td~~~~~~~~~~~~p~~~~l~~i~~~~~~~~~eel~~~y~~~~~gdlK~~lae~l~~~l~P 282 (328)
T 1i6k_A 218 KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRP 282 (328)
T ss_dssp HHCCCCSSCCCCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 44657897766767678998541422002158867999999977998668999999999998589
No 29
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=99.91 E-value=5.8e-23 Score=170.32 Aligned_cols=261 Identities=13% Similarity=0.172 Sum_probs=172.2
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99985149818999843787620243489999999999859849999826011144889886210246889999999999
Q gi|254780949|r 27 LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKI 106 (418)
Q Consensus 27 l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~ 106 (418)
+.......+.++|.|+-|||. +||||+++.++-....+.|++++++|.|++++.... +.+++..|+..
T Consensus 7 ~~~~~~~~k~~v~tG~~PSG~-~HlG~~~g~i~~~~~lq~~~~~~~~iAD~halt~~~----------~~~~~~~~~~e- 74 (346)
T 3n9i_A 7 LSKPTVSSKPIVFSGAQPSGE-LTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQ----------DPALLRKRTLD- 74 (346)
T ss_dssp --------CCEEEEEECSCSC-CBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCC----------CHHHHHHHHHH-
T ss_pred CCCCCCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCC----------CHHHHHHHHHH-
T ss_conf 568888999988966588872-558887999999999867898799997788855799----------99999999999-
Q ss_pred HHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 99988765326777640233016752343134688875223447875347888874035-68831578898989899999
Q gi|254780949|r 107 KGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKR-EQSLSFLEFNYMILQAYDFV 185 (418)
Q Consensus 107 ~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~-~~~is~~EF~Y~llQayD~~ 185 (418)
.+..++-.+-++.+..++.+++--....+.-+ +....++++|-+.-.++.+... ...+.+.-|.||+|||-|.+
T Consensus 75 --~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~---l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lqaaDIl 149 (346)
T 3n9i_A 75 --TLALYLACGIDPKKSTIFVQSHVPEHSQLSWA---LNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADIL 149 (346)
T ss_dssp --HHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHH---HHTTSBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCCCCHHHCEEEECCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf --99999986888445189977654569999999---9501377788754333201001234677202568566513313
Q ss_pred HHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCC--CCEEEEEECE-------EECCC--CHHHHHH---HHCCCCCCCCC
Q ss_conf 998542970201541258899888999973167--9717983110-------23687--1022354---31012333457
Q gi|254780949|r 186 ELAKNYDCRLQMGGSDQWGNIICGIDLGERLKT--PKLFALTSPL-------LTTAS--GTKMGKT---LSGAIWLNKEM 251 (418)
Q Consensus 186 ~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~--~~~~glT~PL-------Lt~~d--G~KmgKS---~~naIwLd~~~ 251 (418)
++ +.++..+|-||.-.+...||+.+|++. ++.|....++ +.+.+ +.||||| .+|+|.|.
T Consensus 150 ~~----~~~~vpvG~DQ~~h~eltRdia~kfn~~y~~~~~~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~n~I~l~--- 222 (346)
T 3n9i_A 150 LY----QTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL--- 222 (346)
T ss_dssp TT----TCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT---
T ss_pred HC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEC---
T ss_conf 10----88734563756999999999999988655883256765657554440157886555665545664278836---
Q ss_pred CCHHHHHHHHHHH--C-------------HHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf 9979999988620--7-------------88898799750688856755543332-10220268898999999730
Q gi|254780949|r 252 TSPYNFWQYWRNI--D-------------DADVVSFAKRLTTLPMSEIDRMAKLQ-GKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 252 tSPy~fyQf~~n~--~-------------D~dV~kyLklfT~l~l~EI~~l~~~~-~~~pr~aKk~LA~EiT~lvH 311 (418)
.||-+...+.++. + .-.|..++++|....-++++++.... +....++|+.||+-+.+.+-
T Consensus 223 d~~~~I~kKI~ka~Td~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~ 298 (346)
T 3n9i_A 223 EDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLS 298 (346)
T ss_dssp SCHHHHHHHHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7877888876520157988765657776688611599987502577499999987699889999999999999989
No 30
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.59 E-value=5.3e-07 Score=65.02 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHH----HHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHH
Q ss_conf 787620243489999----9999998598499998260111448898862102468899-999999999998876
Q gi|254780949|r 44 LTASSLHAGHLTQLM----LLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE-IQENIEKIKGIFSSF 113 (418)
Q Consensus 44 pT~~slH~G~l~~~~----~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~-i~~n~~~~~~q~~~~ 113 (418)
|+++ |||||+.+.. ..|.++..||+|..+-| |.-+|||.=..+++.-.+.++ ++.+.+.++++++.+
T Consensus 16 ~nG~-lHlGHa~~~i~~Di~~R~~r~~G~~V~~v~g--~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 16 VNDV-PHLGHAYTTIAADTIARYYRLRDYDVFFLTG--TDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp TTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE--EECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8897-1001048799999999999823998756475--3416699999999859999999999999999999985
No 31
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.41 E-value=1.3e-05 Score=55.94 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHHHHHHHHHCCCCEECCCCHHHHHH---HHHHHHHH-HCCCCCEEEEEECEE-ECCCCHHHHHHHHCCCCCC
Q ss_conf 99999998542970201541258899---88899997-316797179831102-3687102235431012333
Q gi|254780949|r 181 AYDFVELAKNYDCRLQMGGSDQWGNI---ICGIDLGE-RLKTPKLFALTSPLL-TTASGTKMGKTLSGAIWLN 248 (418)
Q Consensus 181 ayD~~~L~~~~~~~iqiGGsDQwgNi---~~G~eLir-~~~~~~~~glT~PLL-t~~dG~KmgKS~~naIwLd 248 (418)
.+|+...+..++++..++|.|--+|. .++...+. -.+..+..-...|+| .+.+|.|||||.||.+-++
T Consensus 219 ~~~~~~~~~~~~v~~~~~g~dh~~~~~~~~~~~~~~~~~~~~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~ 291 (523)
T 1irx_A 219 RVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLS 291 (523)
T ss_dssp HHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHH
T ss_pred ECCCCHHHCCCCCEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 3262021127873687571210378406788899998606888865789835761775545666666621499
No 32
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.40 E-value=2e-05 Score=54.70 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHH----HHHHHHHCCCEEEEEEECHHHCCCCCCC----CCCCCCCCC-HHHHHHHH
Q ss_conf 49818999843787620243489999----9999998598499998260111448898----862102468-89999999
Q gi|254780949|r 33 QGVVTAYIGYDLTASSLHAGHLTQLM----LLFWLQKTGHKPISLMGGGTSIIGDPSF----RDESRRMMR-SQEIQENI 103 (418)
Q Consensus 33 ~~~~~~y~G~DpT~~slH~G~l~~~~----~l~~~q~~Gh~~i~liG~~T~~IGDPsg----k~~~R~~l~-~~~i~~n~ 103 (418)
.++.-|.+++-....+|||||+.... .-|.++..|+.|+.+-|. |.-| ..+++.-.+ .+-+..+.
T Consensus 17 ~~~~~vt~~~P~~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~v~~~~G~------D~~g~~i~~~a~~~g~~p~e~~~~~~ 90 (560)
T 3h99_A 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICAD------DAHGTPIMLKAQQLGITPEQMIGEMS 90 (560)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE------BCCSHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEE------CCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 788799769988889611325587999999999999469954550704------55739999999985999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998876
Q gi|254780949|r 104 EKIKGIFSSF 113 (418)
Q Consensus 104 ~~~~~q~~~~ 113 (418)
+.+++++.++
T Consensus 91 ~~~~~~~~~l 100 (560)
T 3h99_A 91 QEHQTDFAGF 100 (560)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999974
No 33
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.37 E-value=4.5e-06 Score=58.90 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=44.8
Q ss_pred HHCCCCEECCCCHH-HHHHHHHHHHHHHCC-CCCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCH
Q ss_conf 54297020154125-889988899997316-7971798311023687102235431012333457997999998862078
Q gi|254780949|r 189 KNYDCRLQMGGSDQ-WGNIICGIDLGERLK-TPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDD 266 (418)
Q Consensus 189 ~~~~~~iqiGGsDQ-wgNi~~G~eLir~~~-~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~D 266 (418)
..+..+++.+|.|+ ++....=.-...-.+ .-+.+.++...| ..+|+|||||.||.||+.+- -+-| .
T Consensus 262 ~~~p~di~~~G~D~~~fh~~~~~a~~~~~~~~~~~~i~~~g~l-~~~G~KMSKSlGN~i~~~~~----l~~y-------g 329 (524)
T 2x1l_A 262 RYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWL-LNRGEKMSKSIGNVVDPVNL----VDTF-------G 329 (524)
T ss_dssp HHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCE-EECSCSEETTTEESSCHHHH----HHHH-------C
T ss_pred HCCCCEEEEECCEEHHHHHHHHHHHHHHCCCCCCCEEEECEEE-ECCCCEECCCCCCCCCHHHH----HHHC-------C
T ss_conf 2488507883123007999999999984799988589964189-63885713779954786999----9863-------9
Q ss_pred HHHHHHHHHHC
Q ss_conf 88987997506
Q gi|254780949|r 267 ADVVSFAKRLT 277 (418)
Q Consensus 267 ~dV~kyLklfT 277 (418)
.|+.||+-+..
T Consensus 330 aD~lR~~l~~~ 340 (524)
T 2x1l_A 330 LDQVRYFLLRE 340 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHC
T ss_conf 43999999870
No 34
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.97 E-value=4.1e-05 Score=52.60 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHH----HHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHH
Q ss_conf 78762024348999999----9999859849999826011144889886210246889-9999999999998876
Q gi|254780949|r 44 LTASSLHAGHLTQLMLL----FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQ-EIQENIEKIKGIFSSF 113 (418)
Q Consensus 44 pT~~slH~G~l~~~~~l----~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~-~i~~n~~~~~~q~~~~ 113 (418)
|+++ |||||+.+.... |.++..||+|..+-| |.-+|||--+.+++.-.+.+ -++.+.+.+.+++.++
T Consensus 14 ~ng~-lHiGHa~~~v~~Di~~R~~r~~G~~V~~v~g--~D~~g~~I~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 14 VNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTG--TDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp TTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE--EECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHCCCCEEECCC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8997-2334058789999999999935995682086--2740699999999859999999999999999999995
No 35
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.79 E-value=0.00036 Score=46.36 Aligned_cols=214 Identities=15% Similarity=0.144 Sum_probs=99.5
Q ss_pred HCCCEEEEE-EECCCCCCCCHHHHHHHHH----HHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHH-HHH
Q ss_conf 149818999-8437876202434899999----9999985984999982601114488988621024688999999-999
Q gi|254780949|r 32 SQGVVTAYI-GYDLTASSLHAGHLTQLML----LFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQEN-IEK 105 (418)
Q Consensus 32 ~~~~~~~y~-G~DpT~~slH~G~l~~~~~----l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n-~~~ 105 (418)
..+.+++|+ |--|-. +.||||+-.... -|.++..|+.|..+.| ++=|+|+--+.+.+.-.+..++... .+.
T Consensus 19 ~~~~v~~Y~CGpTvy~-~~HiGhar~~v~~D~l~R~l~~~G~~V~~v~n--itDiddKi~~~A~~~g~~~~e~~~~~~~~ 95 (461)
T 1li5_A 19 HAGEVGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFLGYKLKYVRN--ITDIDDKIIKRANENGESFVAMVDRMIAE 95 (461)
T ss_dssp STTEEEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--BBCCSHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCC-CCCHHHCHHHHHHHHHHHHHHHCCCCEEEEEE--ECCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9995899946885789-84410140299999999999975995189974--16123899999998495999999999999
Q ss_pred HHHHHHH-------------------------HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 9999887-------------------------6532677764023301675234313468887522344--787534788
Q gi|254780949|r 106 IKGIFSS-------------------------FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFS--VNRMLSFES 158 (418)
Q Consensus 106 ~~~q~~~-------------------------~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~--v~~mL~rd~ 158 (418)
+.+-+.. +++-+ .+-..-+.+||-... .|- ++|+... +..|.+-..
T Consensus 96 f~~~~~~L~i~~~~~~~r~t~~i~~~i~~i~~L~~~g----~aY~~~~g~vyf~~~--~~~-~yg~l~~~~~~~~~~~~~ 168 (461)
T 1li5_A 96 MHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKG----HAYVADNGDVMFDVP--TDP-TYGVLSRQDLDQLQAGAR 168 (461)
T ss_dssp HHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTT----SEEECTTSCEEECGG--GCT-TTTTTTTC----------
T ss_pred HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCC----CEEEECCCCEECCCC--CCC-CCCCCCCCCCCCCCCCCC
T ss_conf 9999999579999874111489999999999998679----889726886733565--530-115511002000124676
Q ss_pred H----HHH-----------------CCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHH-HHHH
Q ss_conf 8----874-----------------0356----883157889898989999999854297020154125889988-8999
Q gi|254780949|r 159 V----RSR-----------------LKRE----QSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIIC-GIDL 212 (418)
Q Consensus 159 v----~~R-----------------l~~~----~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~-G~eL 212 (418)
+ .|| .++. -|=--.|.+|+.+.+. --..+|..||.|=.|=-.. -+-.
T Consensus 169 ~~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~l-------g~~~Dih~gG~Dl~fpHhene~aq 241 (461)
T 1li5_A 169 VDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQL-------GNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp ------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHH-------CSSEEEEECBGGGTTTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CHHHHCCCCCHHHCCCCCCCHHHH
T ss_conf 5656567883646653878899876678877558972667589999882-------705322657541068864359999
Q ss_pred HHHC-CCC-CEEEEEECEEECCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 9731-679-7179831102368710223543101233345--7997999998862
Q gi|254780949|r 213 GERL-KTP-KLFALTSPLLTTASGTKMGKTLSGAIWLNKE--MTSPYNFWQYWRN 263 (418)
Q Consensus 213 ir~~-~~~-~~~glT~PLLt~~dG~KmgKS~~naIwLd~~--~tSPy~fyQf~~n 263 (418)
.+-. +.. +-+-+..-.+ ..+|+|||||.||.|.+.+- .-+|-.+-=|+++
T Consensus 242 ~~a~~g~~~~~~w~h~g~~-~~~g~KMSKSlgn~~~~~~~~~~~~~~~~R~~lLs 295 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp HHHHSSSCCEEEECCBCCE-EETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHS
T ss_pred HHHHHCCCCCHHHHHCCCC-CCCCCCCCCCCCCEEEHHHHHCCCCHHHHHHHHHH
T ss_conf 9987558850077635822-25876446446887448886412776999999985
No 36
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6
Probab=97.72 E-value=9.5e-06 Score=56.77 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=48.9
Q ss_pred CCCCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHH
Q ss_conf 25771030777821699889999984997886899999876987988798048000237777
Q gi|254780949|r 334 QHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395 (418)
Q Consensus 334 ~~lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d 395 (418)
.++.++.+... ..+.|-.+|..+|+|+|++||+++|++|-|+|||+.+++|.+.+.+.|
T Consensus 8 ~~~~~~~l~~~---~~irL~k~L~~~g~~~Sr~eAk~lI~~G~V~VNG~~v~~p~~~v~~gD 66 (79)
T 1p9k_A 8 SNMATFSLGKH---PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ 66 (79)
T ss_dssp CCCCEEECCSC---SCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSE
T ss_pred CCCCEEECCCC---CCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCC
T ss_conf 47713864999---719799999877883689999999984997989999277887989999
No 37
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.48 E-value=0.00028 Score=47.03 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=37.7
Q ss_pred CCCCEECCCCHH---HHHHHHHHHHHHHCCCCC-EEEEEECEEECCCCHHHHHHHHCCCCCC
Q ss_conf 297020154125---889988899997316797-1798311023687102235431012333
Q gi|254780949|r 191 YDCRLQMGGSDQ---WGNIICGIDLGERLKTPK-LFALTSPLLTTASGTKMGKTLSGAIWLN 248 (418)
Q Consensus 191 ~~~~iqiGGsDQ---wgNi~~G~eLir~~~~~~-~~glT~PLLt~~dG~KmgKS~~naIwLd 248 (418)
|-+++-++|.|| |+.-..=....- .+..| --.++-.++.+.+|+|||||.||.|..+
T Consensus 547 ~P~Dl~i~G~D~~r~wf~~~l~~~~~~-~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~P~ 607 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVAT-RGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPD 607 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHH-HSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHH
T ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHC-CCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHH
T ss_conf 877403336079750789998776641-7988510787413299999887766788977956
No 38
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.27 E-value=0.00047 Score=45.62 Aligned_cols=59 Identities=19% Similarity=0.074 Sum_probs=40.3
Q ss_pred HCCCCEECCCCHHHHHHHH---HHHHHHHCCC-CCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 4297020154125889988---8999973167-9717983110236871022354310123334
Q gi|254780949|r 190 NYDCRLQMGGSDQWGNIIC---GIDLGERLKT-PKLFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 190 ~~~~~iqiGGsDQwgNi~~---G~eLir~~~~-~~~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
-|-+++-++|.||-.+-.+ -.-+. -.+. .+--.++..++...+|+|||||.||.|+.++
T Consensus 479 ~~P~d~~~~G~Dii~~w~~~~~~~~~~-~~~~~p~k~v~~hG~vl~~~G~KMSKS~GNvi~p~~ 541 (862)
T 1gax_A 479 FYPGDVLVTGYDILFLWVSRMEVSGYH-FMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLE 541 (862)
T ss_dssp SCSBSCEEEEGGGTTTTHHHHHHHHHH-HSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHH
T ss_pred CCCCCEEEEEEHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECEEECCCCCCCCCCCCCCCCHHH
T ss_conf 089718986256777799999997576-449888666887141998898667788999799899
No 39
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3}
Probab=97.13 E-value=0.00046 Score=45.65 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=35.1
Q ss_pred HCCCCEECCCCHHH---HHH--HHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCC
Q ss_conf 42970201541258---899--88899997316797179831102368710223543101233
Q gi|254780949|r 190 NYDCRLQMGGSDQW---GNI--ICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWL 247 (418)
Q Consensus 190 ~~~~~iqiGGsDQw---gNi--~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwL 247 (418)
-|-+++-++|.||- ..- ..+.-+.. .....-++.+..+...+|+|||||.||.|..
T Consensus 601 ~~P~d~~~~G~D~~~~w~~~~~~~~~~~~~--~~~~~~~v~~~g~~~~~G~KMSKSkGNvvdP 661 (967)
T 1wz2_A 601 WYPLDWRCSGKDLIPNHLTFFIFNHVAIFR--EEHWPKGIAVNGFGTLEGQKMSKSKGNVLNF 661 (967)
T ss_dssp HCSCSEEEEEGGGTTTHHHHHHHHHHHHSC--STTSCCCEEEECCEEESSSCCCTTTCCCCBH
T ss_pred ECCCCCCCCCCEECCCCCCEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 056644434631134531000022222357--6653100012333455673336668886547
No 40
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00066 Score=44.63 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=41.8
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHH--HHC
Q ss_conf 88999998499788689999987698798879804800023777--714
Q gi|254780949|r 351 GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ--DFD 397 (418)
Q Consensus 351 ~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~--d~~ 397 (418)
-|--++...++++|-.+||.+|.+|-|.||+++|++|.+.++.+ |++
T Consensus 9 RLd~il~r~~fa~S~~~ARqlI~HghI~Vng~~V~~Ps~lV~~~~Ed~I 57 (71)
T 2cqj_A 9 RLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFV 57 (71)
T ss_dssp EHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTE
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEEECCCCCCEE
T ss_conf 1378998826537899999997669599999996579769538988769
No 41
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.00 E-value=0.019 Score=34.95 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=44.2
Q ss_pred CCCEEEE-EEECCCCCCCCHHHHHHHH----HHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4981899-9843787620243489999----999999859849999826011144889886210246889999
Q gi|254780949|r 33 QGVVTAY-IGYDLTASSLHAGHLTQLM----LLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQ 100 (418)
Q Consensus 33 ~~~~~~y-~G~DpT~~slH~G~l~~~~----~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~ 100 (418)
.+++++| ||--| -++.||||+=+.. .-|.+...|++|..+. .++=|||+--+.+.+.-.+..++.
T Consensus 37 ~~~v~~Y~CGpTv-y~~~HIGhaRt~v~~D~l~R~L~~~G~~V~~v~--nitDiddKIi~~A~~~g~~~~e~a 106 (414)
T 3c8z_A 37 GPTATMYVCGITP-YDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQ--NVTDVDDPLFERAERDGIDWRTLG 106 (414)
T ss_dssp CSEEEEEECCCCT-TSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEE--EECCSCHHHHHHHHHHTCCHHHHH
T ss_pred CCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 8951598589977-888640003269999999999998599669986--568533899999875499999999
No 42
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=96.88 E-value=0.00025 Score=47.45 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=39.9
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHH
Q ss_conf 88999998499788689999987698798879804800023777
Q gi|254780949|r 351 GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ 394 (418)
Q Consensus 351 ~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~ 394 (418)
-|-.++...|+|+|-.+||.+|.+|-|.|||++|++|.+.++.+
T Consensus 103 RLd~vv~r~g~a~s~~~ARqlI~HGHI~Vng~~V~iPSy~V~~~ 146 (158)
T 3jyv_D 103 RLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLD 146 (158)
T ss_dssp BHHHHHHHHTSSSSTTTTTHHHHTSCEEESSCCCSCTTCBCCSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHEECCEEEECCEEECCCCEEEECC
T ss_conf 68889999577799899987667888999999963797384259
No 43
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.0018 Score=41.83 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=42.8
Q ss_pred HCCCCEECCCCHHH---HHHH--HHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42970201541258---8998--889999731679717983110236871022354310123334579979999988620
Q gi|254780949|r 190 NYDCRLQMGGSDQW---GNII--CGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNI 264 (418)
Q Consensus 190 ~~~~~iqiGGsDQw---gNi~--~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~ 264 (418)
-+-+++-++|.||. .--. ...-+.+.. ...-++.+.-....+|+|||||.||.|+ |.++-+..
T Consensus 601 ~~p~d~~~~G~D~~~~~~~~~~~~~~~l~~~~--~~~~~v~~~g~~~~~G~KMSKS~GNvid-------p~~ii~~y--- 668 (810)
T 1wkb_A 601 WYPLDWRCSGKDLIPNHLTFFIFNHVAIFREE--HWPKGIAVNGFGTLEGQKMSKSKGNVLN-------FIDAIEEN--- 668 (810)
T ss_dssp HCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGG--GSCCEEEEECCEEETTBCCCTTTTCCCB-------HHHHHHHH---
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC--CCCCCEEEEEECCCCCEECCCCCCCCCC-------HHHHHHHH---
T ss_conf 57765431353003452110012101001234--6764113444305676148998888799-------79999871---
Q ss_pred CHHHHHHHHHHH
Q ss_conf 788898799750
Q gi|254780949|r 265 DDADVVSFAKRL 276 (418)
Q Consensus 265 ~D~dV~kyLklf 276 (418)
-+|+.||.-++
T Consensus 669 -GaD~lRl~l~~ 679 (810)
T 1wkb_A 669 -GADVVRLYIMS 679 (810)
T ss_dssp -CHHHHHHHHHH
T ss_pred -CHHHHHHHHHH
T ss_conf -90999999981
No 44
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=96.81 E-value=0.00063 Score=44.75 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=39.0
Q ss_pred HCCCCEECCCCHHHHHHHHH-HHHHHHC-CCCC-EEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 42970201541258899888-9999731-6797-17983110236871022354310123334
Q gi|254780949|r 190 NYDCRLQMGGSDQWGNIICG-IDLGERL-KTPK-LFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 190 ~~~~~iqiGGsDQwgNi~~G-~eLir~~-~~~~-~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
-|-+++-+||.||-.|-..= +.+.... +..| .-.++-.++...+|+|||||.||.|.+++
T Consensus 542 ~~PvD~~~~G~D~~r~w~~~~~~~~~~~~~~~pfk~l~~~G~Vld~~G~KMSKSkGNvi~p~~ 604 (821)
T 1ile_A 542 SFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWD 604 (821)
T ss_dssp HSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHH
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 289708973107776689999985555428975504366765999999878778999899899
No 45
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=96.76 E-value=0.0012 Score=42.99 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=41.3
Q ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHH
Q ss_conf 988999998499788689999987698798879804800023777
Q gi|254780949|r 350 MGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ 394 (418)
Q Consensus 350 ~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~ 394 (418)
.-|-.++...|+|+|-.+||.+|.+|-|.||+++|++|.+.+...
T Consensus 89 rRL~~~v~r~~~a~s~~~Arq~I~hghi~v~~~~v~~Ps~~v~~~ 133 (179)
T 1s1h_D 89 RRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLD 133 (179)
T ss_dssp GBHHHHHHHHTSSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEECCCCEEEECC
T ss_conf 889999999366688999999975476358998952486584158
No 46
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.65 E-value=0.0014 Score=42.53 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf 98899999849978868999998769879887980480002377771
Q gi|254780949|r 350 MGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 350 ~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~ 396 (418)
+-|-..|.+.+.| |+++|+++|++|-|+|||++++++.+.+...|-
T Consensus 4 iRLdk~Ls~~~~~-SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~ 49 (234)
T 1ksk_A 4 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD 49 (234)
T ss_dssp EEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCC
T ss_pred CHHHHHHHHCCCC-CHHHHHHHHHCCEEEECCEECCCCCCCCCCCCE
T ss_conf 2299999877896-899999999889599999995678858177666
No 47
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=96.48 E-value=0.00098 Score=43.48 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHH----HHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q ss_conf 787620243489999----99999985984999982601114488988621024688-99999999999998876
Q gi|254780949|r 44 LTASSLHAGHLTQLM----LLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRS-QEIQENIEKIKGIFSSF 113 (418)
Q Consensus 44 pT~~slH~G~l~~~~----~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~-~~i~~n~~~~~~q~~~~ 113 (418)
|+|+ |||||+.... .-|.++..|+.|..+-|-=. - |-|.-+.++..-.+. +-++.+.+.+++++.++
T Consensus 37 ~nG~-lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~-h-G~~i~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 37 VNAS-PHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDE-H-GQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp CSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEC-C-SHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC-C-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8885-2356668899999999999936997034083687-6-199999999859999999999999999999993
No 48
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=96.24 E-value=0.02 Score=34.82 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEE
Q ss_conf 699889999984997886899999876987988798048000237777147976999777854899
Q gi|254780949|r 348 RGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413 (418)
Q Consensus 348 ~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~l 413 (418)
..+-|=..|..+.+++|+|.|..+|+.|-|+|||.++. +...+... ..+.|+.|...+.+
T Consensus 7 ~~mRlD~~L~~~r~~KtRs~A~~~i~~G~V~vNg~~~K-~s~~v~~g-----D~i~i~~~~~~~~i 66 (133)
T 1dm9_A 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELN-----ATLTLRQGNDERTV 66 (133)
T ss_dssp TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTT-----CEEEEEETTEEEEE
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECC-CCCCCCCC-----CEEEEEECCCEEEE
T ss_conf 86863899987162504999999998694798996467-66668899-----98999868926799
No 49
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=96.08 E-value=0.0073 Score=37.73 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 268898999999730000--046799986431025764225771030777821699889999984997886899999876
Q gi|254780949|r 297 EAKKIIATEITTMVHGRE--EAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKS 374 (418)
Q Consensus 297 ~aKk~LA~EiT~lvHGe~--~a~~A~~~s~~lF~~~~~~~~lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~q 374 (418)
.+....+..-.+..||-. .....-+.+.. ..+...+. -+. .++ .-|-.++..+|+++|..+||.+|..
T Consensus 54 Yg~qL~EKQKlr~~YGl~EkQf~~~~~~A~k--~~G~tg~~----ll~--lLE--~RlD~vv~r~g~a~s~~~ARQ~v~H 123 (209)
T 2vqe_D 54 YAVRLREKQKLRRIYGISERQFRNLFEEASK--KKGVTGSV----FLG--LLE--SRLDNVVYRLGFAVSRRQARQLVRH 123 (209)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--SSSCHHHH----HHH--HHH--TBHHHHHHHTTSSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHH----HHH--HHH--HHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9999999999987518878999999999985--68978999----999--999--9889999834751799999999873
Q ss_pred CCEEECCEEECCCCCEECHHHH
Q ss_conf 9879887980480002377771
Q gi|254780949|r 375 NAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 375 GgV~IN~~kI~d~~~~i~~~d~ 396 (418)
|-|.|||.+|+-|.+.+.+.|.
T Consensus 124 ghv~vng~~v~ips~~~k~gd~ 145 (209)
T 2vqe_D 124 GHITVNGRRVDLPSYRVRPGDE 145 (209)
T ss_dssp TCEEETTEECCCTTCBCCTTCE
T ss_pred CCEECCCEEECCCCEECCCCCE
T ss_conf 0732199797358868279999
No 50
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.07 E-value=0.011 Score=36.52 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHH-CCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHH
Q ss_conf 169988999998-4997886899999876987988798048000237777
Q gi|254780949|r 347 SRGMGLLTLIVK-AGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395 (418)
Q Consensus 347 ~~~~~l~dlL~~-~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d 395 (418)
..+++|.=+|.. .+++.+..|||+.+.||-|+|||...+|+.+.+-.-|
T Consensus 5 ~~siPL~iiLRd~Lk~A~t~rEak~Il~~~~V~VDGkvr~d~k~PvGlmD 54 (213)
T 3kbg_A 5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMD 54 (213)
T ss_dssp CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTC
T ss_pred CCCCCEEHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEE
T ss_conf 22665405531353412657999999868938989999644899874378
No 51
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311}
Probab=96.06 E-value=0.0025 Score=40.81 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHCCCCCCHHHHHHHHHCCCE--EECCEEECCCCCEECH
Q ss_conf 99984997886899999876987--9887980480002377
Q gi|254780949|r 355 LIVKAGFATSTNEARRHLKSNAI--KINNSIISNEKLQIKL 393 (418)
Q Consensus 355 lL~~~gL~~SksEARRlI~qGgV--~IN~~kI~d~~~~i~~ 393 (418)
+|++.|++.|+++|+++|.+|-| +|||++++.|.+.+..
T Consensus 12 ~Lv~~gl~~SR~~A~~lI~~G~V~~~Vng~~v~Kps~~v~~ 52 (291)
T 3hp7_A 12 LAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDD 52 (291)
T ss_dssp HHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEET
T ss_pred HHHHCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
T ss_conf 99978481149999999985995242099894688678799
No 52
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=95.99 E-value=0.0065 Score=38.06 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=29.0
Q ss_pred EECEEECCCC--HHHHHHHH-----------CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 3110236871--02235431-----------012333457997999998862078889879975068
Q gi|254780949|r 225 TSPLLTTASG--TKMGKTLS-----------GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTT 278 (418)
Q Consensus 225 T~PLLt~~dG--~KmgKS~~-----------naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~ 278 (418)
..-|.++..= .+|=.+.| |.+-|.. ..| +-|+-+++++|..++++...
T Consensus 178 ~i~l~eGr~rqIRr~~~~iG~~V~~L~R~~~G~~~l~~--L~~----G~~r~l~~~ei~~l~~~~~~ 238 (290)
T 3dh3_A 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG--IPL----GEWRDLTDDELIDLFKLIEN 238 (290)
T ss_dssp EEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECTT--CCT----TCEEECCHHHHHHHHHTCCC
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEECCC--CCC----CCEEECCHHHHHHHHHHHHC
T ss_conf 99925886799999999869979798999989987389--899----77489999999999987633
No 53
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=95.96 E-value=0.0088 Score=37.22 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHHC
Q ss_conf 8999998499788689999987698798879804800023777714
Q gi|254780949|r 352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFD 397 (418)
Q Consensus 352 l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~~ 397 (418)
+-.++-.+|+++|..+||.+|..|-|.|||.+|+-|.+.+.+.|.+
T Consensus 53 LDnvvyR~gfa~t~~~ARQlv~Hghi~VNgk~v~ipS~~vk~gD~I 98 (159)
T 1c05_A 53 LDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTI 98 (159)
T ss_dssp HHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCEEECCEEEEECCEECCCCCEE
T ss_conf 5677204775279999999998037070247985256774899898
No 54
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=95.85 E-value=0.0053 Score=38.66 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHH
Q ss_conf 9999984997886899999876987988798048000237777
Q gi|254780949|r 353 LTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395 (418)
Q Consensus 353 ~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d 395 (418)
-..|...+. -|+++|+++|++|.|+|||+++++++..+...|
T Consensus 6 dkfLs~~~~-~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d 47 (243)
T 1vio_A 6 DKFIAENVG-LTRSQATKAIRQSAVKINGEIVKSGSVQISQED 47 (243)
T ss_dssp HHHHHHHHT-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTS
T ss_pred HHHHHHCCC-CCHHHHHHHHHCCEEEECCEEECCCCEECCCCC
T ss_conf 999998778-589999999978909999999054996848878
No 55
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=95.15 E-value=0.18 Score=28.50 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCC--EEEEEE---CEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 9999999854297020154125889988899997316797--179831---10236871022354310123334
Q gi|254780949|r 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPK--LFALTS---PLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 181 ayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~--~~glT~---PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
||-.......++..|-+.|.||-+....-....+..+-.+ ..-... -|+.+..+.|||+..||+|.+++
T Consensus 225 a~~~~k~~~~~d~~I~v~g~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~d 298 (464)
T 3fnr_A 225 VYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSD 298 (464)
T ss_dssp HHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHH
T ss_conf 99999872289728999866046677679999997567755640589888899769802344147888355999
No 56
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.12 E-value=0.014 Score=35.96 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-----CCCCCCCCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf 268898999999730000046799986431025-----764225771030777821699889999984997886899999
Q gi|254780949|r 297 EAKKIIATEITTMVHGREEAEKAATAAMECFDM-----SIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRH 371 (418)
Q Consensus 297 ~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~-----~~~~~~lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRl 371 (418)
.+....+..-.+..||-..- .+...|.. +...+.+-. .++. -|-.++..+|+++|..+||.+
T Consensus 44 Yg~qL~eKQKlr~~YGi~Ek-----Qf~~~~~~a~~~~g~tg~~ll~------lLE~--RLDnvvyR~gfa~t~~~ARQl 110 (201)
T 3bbn_D 44 YRIRLEEKQKLRFHYGITER-----QLLKYVRIARKAKGSTGQVLLQ------LLEM--RLDNILFRLGMAPTIPGARQL 110 (201)
T ss_dssp THHHHTTHHHHHHHHTCCHH-----HHHHHHHHHHHSSSCTTTTTTH------HHHS--BTTTTTTTTTSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHCCCCHHHHHHH------HHHH--HHHHHHHHCCCCCCHHHHCCE
T ss_conf 99999999999998399789-----9999999998559977999999------9998--767887505521577761304
Q ss_pred HHCCCEEECCEEECCCCCEECHHHH
Q ss_conf 8769879887980480002377771
Q gi|254780949|r 372 LKSNAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 372 I~qGgV~IN~~kI~d~~~~i~~~d~ 396 (418)
|..|-|.|||.+|+=|.+.+.+.|.
T Consensus 111 V~Hghi~VNgk~v~ipSy~vk~GD~ 135 (201)
T 3bbn_D 111 VNHRHILVNGRIVDIPSYRCKPQDT 135 (201)
T ss_dssp HHTTCEEETTEECCCTTCBCCTTEE
T ss_pred EECCCEEECCEEECCCCEECCCCCE
T ss_conf 7327848779897799878279998
No 57
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.77 E-value=0.016 Score=35.54 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC-CEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 26889899999973000004679998643102576422577-10307778216998899999849978868999998769
Q gi|254780949|r 297 EAKKIIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMP-TISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSN 375 (418)
Q Consensus 297 ~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~~~~~~~lp-~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qG 375 (418)
.+....+..-.+..||--+ +.+...|.......... +.-+.. ++ .-|-.++-.+|+++|..+||.||..|
T Consensus 50 Yg~qL~EKQKlr~~Ygi~E-----kQf~~~~~~A~~~~g~tg~~ll~l--LE--~RLDnvvyR~gfa~t~~~ARQlV~Hg 120 (205)
T 3ofo_D 50 YGVQLREKQKVRRIYGVLE-----RQFRNYYKEAARLKGNTGENLLAL--LE--GRLDNVVYRMGFGATRAEARQLVSHK 120 (205)
T ss_dssp HHHHHHHHHHHHHHHTCCH-----HHHHHHHHHHHHSSSCHHHHHHHH--HH--HBHHHHHHTTTSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHCCCCHHHHHHHH--HH--HHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 9999999999988828877-----999999999974799689999999--99--87778986066204799999888608
Q ss_pred CEEECCEEECCCCCEECHHHH
Q ss_conf 879887980480002377771
Q gi|254780949|r 376 AIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 376 gV~IN~~kI~d~~~~i~~~d~ 396 (418)
-|.|||.+|+-|.+.+.+.|.
T Consensus 121 hi~VNgk~v~ips~~~k~gd~ 141 (205)
T 3ofo_D 121 AIMVNGRVVNIASYQVSPNDV 141 (205)
T ss_dssp CEESSSSBCCSTTCBCCTTCE
T ss_pred CEEECCEEECCCCCCCCCCCE
T ss_conf 865099786378725369989
No 58
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=93.59 E-value=0.067 Score=31.40 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHH-HHHH----HHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 787620243489-9999----999998598499998260111448898862102468-899999999999998876
Q gi|254780949|r 44 LTASSLHAGHLT-QLML----LFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMR-SQEIQENIEKIKGIFSSF 113 (418)
Q Consensus 44 pT~~slH~G~l~-~~~~----l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~-~~~i~~n~~~~~~q~~~~ 113 (418)
|+|+ ||+||+. +.+. -|..+..|++++.+-|-=+- |=|.-+.++..-.+ .+-+..+.+.+++|+.++
T Consensus 13 ~NG~-lHiGH~~~~~l~aDi~~Ry~rm~G~~v~~~~GtDeH--G~~i~~~a~~~g~~p~e~~d~~~~~~~~~~~~l 85 (722)
T 1rqg_A 13 ANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEH--GTPISFRALKEGRSPREIVDEFHEQIKITFQRA 85 (722)
T ss_dssp TTSC-CBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCC--SHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCC--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8988-566743337899999999998079955863866620--799999999829999999999999999999983
No 59
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=91.12 E-value=0.056 Score=31.89 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEE
Q ss_conf 9999849978868999998769879887980480002377771479769997778548
Q gi|254780949|r 354 TLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNH 411 (418)
Q Consensus 354 dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~ 411 (418)
..|..++++.|+|-|+++|++|.|++||+.+ .+.+.+...| .+.++.+.+..
T Consensus 5 k~L~~~~~~~SRs~~~~lI~~G~V~vng~~~-k~s~~V~~Gd-----~i~i~~~~~~~ 56 (92)
T 2k6p_A 5 KFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGD-----TISLHYLKGIE 56 (92)
T ss_dssp HHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTC-----EEEECCSSCCE
T ss_pred HHHHHCCCCCCHHHHHHHHHCCCEEECCEEE-EECCEECCCC-----EEEEEECCCCE
T ss_conf 9998737737999999999889289799997-5236827999-----99998389707
No 60
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Probab=90.82 E-value=0.33 Score=26.81 Aligned_cols=70 Identities=20% Similarity=0.079 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 989898999999985429702015412588998889999731679717983110236871022354310123334
Q gi|254780949|r 175 NYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 175 ~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
+|.+-=+-|=... |++-=|=|.|-.-|--.=+.|++-++-++.--...||+++.+|+||||+-+ +.-+++
T Consensus 171 tY~lA~vVDD~~~----gIThViRG~Dl~~st~~Q~~L~~aLg~~~P~y~H~pli~~~~G~KLSKr~~-a~~i~~ 240 (298)
T 1nzj_A 171 AYNLAVVVDDHFQ----GVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH-APALPK 240 (298)
T ss_dssp CHHHHHHHHHHHT----TCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC--------------CCCS
T ss_pred CEEECHHCCCCCC----CCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC-HHHHHC
T ss_conf 1122201154326----997896488666576889999997389998549867257789985677687-113335
No 61
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=90.32 E-value=0.93 Score=23.86 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=38.8
Q ss_pred CEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8189998-4378762024348999999999985984999982601114488988621024688999999999
Q gi|254780949|r 35 VVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEK 105 (418)
Q Consensus 35 ~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~ 105 (418)
...+|.| ||| +|.||+-.+ ++.-+.+.++|++||.+-. ..+.|+..|.++..+-++.
T Consensus 8 ~~~v~~GrFqP----~H~GH~~~i---~~a~~~~d~viv~vgs~~~-------~~~~~nPft~~eR~~mi~~ 65 (352)
T 2qjt_B 8 DISVFIGRFQP----FHKGHLHNI---IIALQNSKKVIINIGSCFN-------TPNIKNPFSFEQRKQMIES 65 (352)
T ss_dssp EEEEEEECCTT----CCHHHHHHH---HHHHHSEEEEEEEEEEESC-------CCCSSSCSCHHHHHHHHHH
T ss_pred CEEEEEECCCC----CCHHHHHHH---HHHHHCCCEEEEEEECCCC-------CCCCCCCCCHHHHHHHHHH
T ss_conf 68999963599----877899999---9998559969999946998-------8887899899999999999
No 62
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=90.17 E-value=0.84 Score=24.14 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCC--CCCCCCCCCHHH
Q ss_conf 99999998542--97020154125889988899997316797179831102368710223543101--233345799799
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGA--IWLNKEMTSPYN 256 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~na--IwLd~~~tSPy~ 256 (418)
.|+|.+.-.|+ +++.=|-|.|=.-|---=+.|.+.++-++.-=...|||.+.+|+||||..+.. -++-+.--.|-.
T Consensus 190 tY~~a~~vDD~~~~ithviRg~d~~~~t~~~~~~~~~l~~~~p~~~h~pll~~~~g~klSKr~~~~~v~~~r~~G~~peA 269 (492)
T 2cfo_A 190 LYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPA 269 (492)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHH
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCHH
T ss_conf 27754440675567677873520125534999998752579983653746316678732323897547778767998089
Q ss_pred HHHHHHH
Q ss_conf 9998862
Q gi|254780949|r 257 FWQYWRN 263 (418)
Q Consensus 257 fyQf~~n 263 (418)
+-.|...
T Consensus 270 l~NyLa~ 276 (492)
T 2cfo_A 270 LANYMTL 276 (492)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 63
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=89.55 E-value=0.33 Score=26.83 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=36.3
Q ss_pred CCCCEECCCCHHH---HHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 2970201541258---8998889999731679717983110236871022354310123334
Q gi|254780949|r 191 YDCRLQMGGSDQW---GNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 191 ~~~~iqiGGsDQw---gNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
+-.+++++|-|+- .......-+..... .|..-++...+ ..||+|||||.||+||.++
T Consensus 293 ~p~~i~~~G~D~~~fh~~~~~~~~~~~~~~-~P~~~~~~~~l-~~dg~KMSKS~GN~i~~~d 352 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMSAELP-LPERLVSHGWW-TKDHKKISKSLGNAFDPVE 352 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHHTTCC-CCSCEEEECCE-EETTEECCTTTTCCCCHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCHHHH-HHHHHHHHHCCCCCCCHHH
T ss_conf 864023436662001145888887762258-99611000343-1203432002588788556
No 64
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=88.98 E-value=0.061 Score=31.66 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.8
Q ss_pred ECCCCHHHHHHHHCCCCCCC
Q ss_conf 36871022354310123334
Q gi|254780949|r 230 TTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 230 t~~dG~KmgKS~~naIwLd~ 249 (418)
...+|+|||||.||.||..+
T Consensus 338 l~~~G~KMSKS~GNvIdp~d 357 (722)
T 1rqg_A 338 LTLEGKKFSTSRNWAIWVHE 357 (722)
T ss_dssp EEETTEECBTTTTBSCBHHH
T ss_pred EEECCCEEECCCCCCCCHHH
T ss_conf 96168541103787378899
No 65
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=88.13 E-value=0.26 Score=27.49 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHCCCCCC
Q ss_conf 87102235431012333
Q gi|254780949|r 232 ASGTKMGKTLSGAIWLN 248 (418)
Q Consensus 232 ~dG~KmgKS~~naIwLd 248 (418)
.+|+|||||.||.|..+
T Consensus 633 ~~g~kMSKS~gN~v~p~ 649 (878)
T 2v0c_A 633 WKPAVMSKSKGNGVMVG 649 (878)
T ss_dssp EEEEECSGGGTCCCBHH
T ss_pred CCHHHCCEECCCCCCCC
T ss_conf 52310424025788840
No 66
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=87.19 E-value=0.094 Score=30.42 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.5
Q ss_pred EEEEEECEEEC
Q ss_conf 17983110236
Q gi|254780949|r 221 LFALTSPLLTT 231 (418)
Q Consensus 221 ~~glT~PLLt~ 231 (418)
...+..|+...
T Consensus 181 ~~~~~~~~~~~ 191 (325)
T 1v9f_A 181 GGTVDEPISRH 191 (325)
T ss_dssp CEEEECCEEEC
T ss_pred CCCEECCCCCC
T ss_conf 65050443237
No 67
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=85.94 E-value=0.46 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=35.6
Q ss_pred EEEEEECCCCCCCCHHHHHH----HHHHHHHHHCCCEEE--EEEECHHHCCC
Q ss_conf 89998437876202434899----999999998598499--99826011144
Q gi|254780949|r 37 TAYIGYDLTASSLHAGHLTQ----LMLLFWLQKTGHKPI--SLMGGGTSIIG 82 (418)
Q Consensus 37 ~~y~G~DpT~~slH~G~l~~----~~~l~~~q~~Gh~~i--~liG~~T~~IG 82 (418)
-=|+.--||+| ||+||+=. =..-|-+.-.||+|+ .-+||+-.+||
T Consensus 107 VEf~SpNp~k~-lHvGHlRstiiGd~laril~~~G~~V~r~nyigD~G~Qi~ 157 (592)
T 1iq0_A 107 VEHTSVNPNKE-LHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAA 157 (592)
T ss_dssp EECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHH
T ss_pred EEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH
T ss_conf 98458989998-6401278789889999999707998768875288733537
No 68
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima}
Probab=85.54 E-value=1.9 Score=21.86 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCC---CCCCCHH
Q ss_conf 99999998542--970201541258899888999973167971798311023687102235431012333---4579979
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLN---KEMTSPY 255 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd---~~~tSPy 255 (418)
.|+|...-.|+ +++-=|-|.|-+-|--.=+-+++-++-+...=...|||.+.||+|+||--|. +-+. +.=-.|.
T Consensus 205 tY~fa~vvDD~~~~ithvirg~d~~~~t~~~~~~~~~l~~~~p~~~h~~~i~~~dg~KLSKR~g~-~si~~~r~~G~~p~ 283 (481)
T 2o5r_A 205 TYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGA-TSVEAFRDMGYLPE 283 (481)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSC-CBHHHHHHHTCCHH
T ss_pred CEEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCC-CCHHHHHHCCCCHH
T ss_conf 02220030675568564315630456359999999984759983895054408998975664797-58999998799889
Q ss_pred HHHHHHHH
Q ss_conf 99998862
Q gi|254780949|r 256 NFWQYWRN 263 (418)
Q Consensus 256 ~fyQf~~n 263 (418)
.+-.|+..
T Consensus 284 Al~NyL~~ 291 (481)
T 2o5r_A 284 ALVNYLAL 291 (481)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999999
No 69
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=83.04 E-value=0.88 Score=24.01 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHHHCCC----CCEEEEEECEEECCCCHHHHHHHHCCCCCC
Q ss_conf 2970201541258899888999973167----971798311023687102235431012333
Q gi|254780949|r 191 YDCRLQMGGSDQWGNIICGIDLGERLKT----PKLFALTSPLLTTASGTKMGKTLSGAIWLN 248 (418)
Q Consensus 191 ~~~~iqiGGsDQwgNi~~G~eLir~~~~----~~~~glT~PLLt~~dG~KmgKS~~naIwLd 248 (418)
++.-|-+-|+||-+.+..=....+.++- ....-+.+-++.+.+| ||+++.|+.|++.
T Consensus 376 ~d~iI~V~g~~q~~~~~~l~~~l~~lg~~~~~~~l~h~~~g~v~~~~~-kms~r~g~~v~~~ 436 (629)
T 2zue_A 376 ANIVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVERPEG-KFSGRKGTWVGFT 436 (629)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEEBTTB-CCCTTTTTTTTCB
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCC-CCCEEECCEEHHH
T ss_conf 357988547630337999999999827996003537888767862777-6200011200113
No 70
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=82.08 E-value=1.1 Score=23.38 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=36.0
Q ss_pred EEEEEEECCCCCCCCHHHHHH----HHHHHHHHHCCCEEE--EEEECHHHCCCC
Q ss_conf 189998437876202434899----999999998598499--998260111448
Q gi|254780949|r 36 VTAYIGYDLTASSLHAGHLTQ----LMLLFWLQKTGHKPI--SLMGGGTSIIGD 83 (418)
Q Consensus 36 ~~~y~G~DpT~~slH~G~l~~----~~~l~~~q~~Gh~~i--~liG~~T~~IGD 83 (418)
+-=|+.--||+| ||+||+=. =-.-|-+.-+||+|+ .-||||=.|||-
T Consensus 146 iVEf~SaNptkp-lHvGHlR~aiiGd~Lanll~~~G~~V~re~YinD~G~Qi~~ 198 (607)
T 1f7u_A 146 IIEFSSPNIAKP-FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGL 198 (607)
T ss_dssp EEECCCCBTTSC-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHH
T ss_pred EEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 998517989988-63313562799999999999879918885424755418899
No 71
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=81.62 E-value=2.7 Score=20.83 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=33.8
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 498189998-4378762024348999999999985984999982601114488988621024688999999
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQEN 102 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n 102 (418)
+.++.+|.| ||| +|.||+-.+.... +.. -+++++||.. +|+- ..++.++.++-.+-
T Consensus 6 ~~~igl~~GtFdP----~H~GHl~li~~a~--~~~-d~viV~v~s~-----~~~~--~~~npfs~~eR~~M 62 (341)
T 2qjo_A 6 KYQYGIYIGRFQP----FHLGHLRTLNLAL--EKA-EQVIIILGSH-----RVAA--DTRNPWRSPERMAM 62 (341)
T ss_dssp SEEEEEEEECCTT----CCHHHHHHHHHHH--HHE-EEEEEEEEEE-----TCCC--CSSSCSCHHHHHHH
T ss_pred CCCEEEEEECCCC----CCHHHHHHHHHHH--HHC-CEEEEEECCC-----CCCC--CCCCCCCHHHHHHH
T ss_conf 2138999866487----7789999999999--779-9899998168-----6688--88899899999999
No 72
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=81.60 E-value=2.5 Score=21.03 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCC
Q ss_conf 29989999985149818999843787620243489999999999859849999826011144889
Q gi|254780949|r 21 ISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPS 85 (418)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPs 85 (418)
++.-.+++..++++. +||=||--.||-||+--+..-+ .....+|+=|==--.|.|+..
T Consensus 4 i~~i~elr~~l~~~~----ig~VPTMGaLH~GHlsLi~~A~---~~~d~vvVSIFVNP~QF~~~e 61 (276)
T 1v8f_A 4 VSTVAELRAALPREG----VGFVPTMGYLHRGHLALVERAR---RENPFVVVSVFVNPLQFGPGE 61 (276)
T ss_dssp ECSHHHHHHHCCSSC----EEEEEECSSCCHHHHHHHHHHH---HHCSEEEEEECCCGGGCCTTS
T ss_pred ECHHHHHHHHHCCCC----EEEECCCCCHHHHHHHHHHHHH---HHCCCEEEEEEECCCCCCCCH
T ss_conf 612999999861798----9998686517599999999999---768978999977776689842
No 73
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=80.44 E-value=2.9 Score=20.57 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=67.9
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-EEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 14981899984378762024348999999999985984999-98260111448898862102468899999999999998
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPIS-LMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIF 110 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~-liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~ 110 (418)
.+++.+||+. =+-|-+|.||+-. |++....|-..|+ +..|.... +.+-+|.++.++-.+.+++++-.
T Consensus 4 ~~~~~rV~~~--G~FDl~H~GH~~~---l~~Ak~~gd~LiVgv~sD~~i~------~~Kg~Pv~~~~eR~~~v~~~k~V- 71 (341)
T 3elb_A 4 GRRAVRVWCD--GCYDMVHYGHSNQ---LRQARAMGDYLIVGVHTDEEIA------KHKGPPVFTQEERYKMVQAIKWV- 71 (341)
T ss_dssp CCCCCEEEEE--ECCCSCCHHHHHH---HHHHHHTSSEEEEEECCHHHHH------HHSSCCSSCHHHHHHHHHHBTTC-
T ss_pred CCCCEEEEEE--EEECCCCHHHHHH---HHHHHHCCCEEEEEECCHHHHH------HCCCCCCCCHHHHHHHHHCCCCC-
T ss_conf 9886699993--1357789899999---9999973998999983569998------55999989999999999735688-
Q ss_pred HHHHHCCC---------CCCCCEEEEHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 87653267---------776402330167523431---346888752234478753478888740356883157889898
Q gi|254780949|r 111 SSFIKYGT---------GKTDALMLNNETWLCSIK---YIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMI 178 (418)
Q Consensus 111 ~~~~~~~~---------~~~~~~i~~N~~W~~~~~---~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~l 178 (418)
..++.+.+ .-..-.+|-..||..+-. .-..++..|+... +.+-.|+|=|+...-+
T Consensus 72 D~Vi~~~~~~~~~~~l~~~~~d~vv~GdD~~~~~~~~~~~~~~k~~g~~~~-------------~~rt~giSTT~ii~r~ 138 (341)
T 3elb_A 72 DEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRE-------------CKRTQGVSTTDLVGRM 138 (341)
T ss_dssp CEEEETCCSSCCHHHHHHTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEE-------------CCCCTTCCHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHCCCEEEE-------------ECCCCCCCHHHHHHHH
T ss_conf 789966886257999998699999988816567774127799980998998-------------1476998879999999
Q ss_pred HHHHHHHH
Q ss_conf 98999999
Q gi|254780949|r 179 LQAYDFVE 186 (418)
Q Consensus 179 lQayD~~~ 186 (418)
|+.+-..+
T Consensus 139 l~~~~~~~ 146 (341)
T 3elb_A 139 LLVTKAHH 146 (341)
T ss_dssp HC------
T ss_pred HHHHHCCC
T ss_conf 87521224
No 74
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Probab=77.99 E-value=3.3 Score=20.23 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=25.6
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 498189998-43787620243489999999999859849999826
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGG 76 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~ 76 (418)
.-++.+|-| ||| +|.||+-.+... .+..-++++++++
T Consensus 20 ~mriai~~GsFdP----iH~GHl~i~~~a---~~~~D~viv~~~~ 57 (177)
T 3nbk_A 20 HMTGAVCPGSFDP----VTLGHVDIFERA---AAQFDEVVVAILV 57 (177)
T ss_dssp CCCEEEEEECCTT----CCHHHHHHHHHH---HHHSSEEEEEECC
T ss_pred CCEEEEECCCCCC----CCHHHHHHHHHH---HHHCCEEEEEECC
T ss_conf 8669996867798----878999999999---9869989998345
No 75
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=74.74 E-value=3.5 Score=20.04 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=49.9
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHC
Q ss_conf 99999998542--9702015412588998889999731679717983110236871022354310
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~n 243 (418)
.|+|.+.-.|+ +++-=|-|.|=.-|.-.=+-|.+.++-++..-...||+.+.+|+|+||..+.
T Consensus 186 ~y~~a~~vdD~~~~ithvirg~d~~~~~~~~~~l~~~l~~~~p~~~h~pl~~~~~g~klsKr~~~ 250 (468)
T 1j09_A 186 TYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSH 250 (468)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSCBCCTTTSC
T ss_pred CEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCCCCCCCCCCC
T ss_conf 31203203641037654541134200678999999962689983101375235799704676897
No 76
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp}
Probab=74.25 E-value=3.2 Score=20.29 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=69.3
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99843787620243489999999999859849999826011144889886210246889999999999999887653267
Q gi|254780949|r 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGT 118 (418)
Q Consensus 39 y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~ 118 (418)
.+||=||--.||-||+-.+..-+ .....+|+=|=---.|-+++ +..+.--+++.+-++..-..
T Consensus 25 ~IgfVPTMGaLH~GHlsLI~~A~---~~~d~vvVSIFVNP~QF~~~------------eD~~~YPr~le~D~~ll~~~-- 87 (264)
T 3n8h_A 25 KIGFVPTMGALHNGHISLIKKAK---SENDVVIVSIFVNPTQFNNP------------NDYQTYPNQLQQDIQILASL-- 87 (264)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHH---HHCSEEEEEECCCGGGCSCH------------HHHHHSCCCHHHHHHHHHHT--
T ss_pred EEEEECCCCHHHHHHHHHHHHHH---HHCCEEEEEEECCCCCCCCH------------HHHHHCCHHHHHHHHHHHHC--
T ss_conf 09998186137699999999998---74990899995171126875------------66776966577789999976--
Q ss_pred CCCCCEEEEH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEC
Q ss_conf 7764023301-675234313468887522344787534788887403568831578898989899999998542970201
Q gi|254780949|r 119 GKTDALMLNN-ETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQM 197 (418)
Q Consensus 119 ~~~~~~i~~N-~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqi 197 (418)
...+.+..+ .+-|-.-....+. . ...+...|.- +. -|=.|....=-+..=+..+ ..+.-.
T Consensus 88 -gvd~vf~P~~~eiyp~~~~~~~~--~--~~~~~~~LeG---~~-----RPgHF~GV~TVV~kLf~ii------~P~~a~ 148 (264)
T 3n8h_A 88 -DVDVLFNPSEKDIYPDGNLLRIE--P--KLEIANILEG---KS-----RPGHFSGMLTVVLKLLQIT------KPNNLY 148 (264)
T ss_dssp -TCSEEECCCHHHHCTTCSCEEEE--E--CSHHHHSTHH---HH-----STTHHHHHHHHHHHHHHHH------CCSEEE
T ss_pred -CCEEEEECCHHHCCCCCCCEEEE--C--CCCCCCCCCC---CC-----CCHHHHHHHHHHHHHHHCC------CCCEEE
T ss_conf -99099907444324678743784--3--6321332468---87-----8608888999999999635------998004
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHH
Q ss_conf 541258899888999973167971798311023687102235
Q gi|254780949|r 198 GGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGK 239 (418)
Q Consensus 198 GGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgK 239 (418)
=|---|--...=..+++.+. -++-.+.+|.+=..||-=||.
T Consensus 149 FGeKDyQQl~iIk~~v~dl~-~~v~Ii~~pTvRe~dGLAlSS 189 (264)
T 3n8h_A 149 LGEKDYQQVMLIKQLVKDFF-INTKIIVCPTQRQPSGLPLSS 189 (264)
T ss_dssp EETTSHHHHHHHHHHHHHTT-CCCEEEEECCCBCTTSCBCCG
T ss_pred EEHHHHHHHHHHHHHHHHHC-CCCEEEECCEEECCCCCEEEH
T ss_conf 51032899999999999748-881798515588479972007
No 77
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=73.88 E-value=0.79 Score=24.33 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=62.3
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1498189998437876202434899999999998598499998260111448898-862102468899999999999998
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSF-RDESRRMMRSQEIQENIEKIKGIF 110 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsg-k~~~R~~l~~~~i~~n~~~~~~q~ 110 (418)
..++++||+ |=+-|-+|.||+-.|... ..++....++||=.+ |.+- +.+-|+.++.++-...+..++.--
T Consensus 73 ~~~~~rVyv--~G~FDLfH~GHi~lL~~A---K~l~~gd~LIVGV~s----De~i~k~Kg~pi~~~~eR~~~l~~~r~VD 143 (236)
T 3hl4_A 73 CERPVRVYA--DGIFDLFHSGHARALMQA---KNLFPNTYLIVGVCS----DELTHNFKGFTVMNENERYDAVQHCRYVD 143 (236)
T ss_dssp TTSCEEEEE--EECCTTCCHHHHHHHHHH---HTSSSSEEEEEEECC----HHHHHHHTCCCSSCHHHHHHHHHTBTTCS
T ss_pred CCCCEEEEE--ECEECCCCHHHHHHHHHH---HHCCCCCEEEEEECC----HHHHHHCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 789959999--451588898999999999---605998989999777----89998569999999999999865214553
Q ss_pred HHHHHCC--------CCCCCCEEEEHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 8765326--------777640233016752343134---68887522344787534788887403568831578898989
Q gi|254780949|r 111 SSFIKYG--------TGKTDALMLNNETWLCSIKYI---DLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMIL 179 (418)
Q Consensus 111 ~~~~~~~--------~~~~~~~i~~N~~W~~~~~~~---~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~ll 179 (418)
..+++.. ..-..-.++...+|+...+.- ..+...|+... +..-.|+|=+...=-++
T Consensus 144 ~VI~~~p~~~~~~~l~~~~~d~vv~gdd~~~~~~~~~~~~~~k~~g~~~~-------------i~rt~giSTT~II~RI~ 210 (236)
T 3hl4_A 144 EVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAP-------------TQRTEGISTSDIITRIV 210 (236)
T ss_dssp EEESSCCSSCCHHHHHHTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEE-------------ECCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEE-------------ECCCCCCCHHHHHHHHH
T ss_conf 52248985562999987299789868964427771559999873899999-------------78998823999999999
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780949|r 180 QAYDFV 185 (418)
Q Consensus 180 QayD~~ 185 (418)
+.||-+
T Consensus 211 ~~~d~y 216 (236)
T 3hl4_A 211 RDYDVY 216 (236)
T ss_dssp HHHHC-
T ss_pred HHHHHH
T ss_conf 879999
No 78
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=73.88 E-value=4.4 Score=19.37 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHCCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 51498189998-4378762024348999999999985984999982601114488988621024688999999
Q gi|254780949|r 31 CSQGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQEN 102 (418)
Q Consensus 31 l~~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n 102 (418)
+..+...+|-| ||| +|.||+-.+.. ..+..-.++++++.. ...++..+.+.....
T Consensus 9 ~~~~MkaifgGsFdP----iH~GHl~i~~~---a~~~~D~viv~~~~~----------~~~~~~~~~~~r~~~ 64 (173)
T 1vlh_A 9 HHHHMKAVYPGSFDP----ITLGHVDIIKR---ALSIFDELVVLVTEN----------PRKKCMFTLEERKKL 64 (173)
T ss_dssp ----CEEEEEECCTT----CCHHHHHHHHH---HHTTCSEEEEEEECC----------TTCCCSSCHHHHHHH
T ss_pred CCCCCEEEEEECCCC----CCHHHHHHHHH---HHHHCCEEEEEECCC----------CCCCCCCCHHHHHHH
T ss_conf 446426996234787----77999999999---998699999950355----------567877878899999
No 79
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=73.84 E-value=4.5 Score=19.37 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 498189998-437876202434899999999998598499998
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLM 74 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~li 74 (418)
++++.+|.| ||| .|.||+-.+... .+..+-..|.++
T Consensus 6 ~kkIaifgGSFdP----~H~GH~~ii~~a--~~~~~~~~v~~~ 42 (194)
T 1kam_A 6 SKKIGIFGGTFDP----PHNGHLLMANEV--LYQAGLDEIWFM 42 (194)
T ss_dssp CCEEEEEEECCSS----CCHHHHHHHHHH--HHHTTCSEEEEE
T ss_pred CCEEEEECCCCCC----CCHHHHHHHHHH--HHHCCCCEEEEE
T ss_conf 9779995647584----879999999999--998599789999
No 80
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=73.54 E-value=4.5 Score=19.32 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHH
Q ss_conf 498189998-4378762024348999999999985984999982601
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGT 78 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T 78 (418)
++++.++.| ||| +|+||+-.+... ....-.++++|+...
T Consensus 1 ~Kkigv~iG~FDp----vH~GH~~li~~A---~~~~d~l~vvi~~~~ 40 (365)
T 1lw7_A 1 EKKVGVIFGKFYP----VHTGHINMIYEA---FSKVDELHVIVCSDT 40 (365)
T ss_dssp CCCEEEEEECCSS----CCHHHHHHHHHH---HTTCSEEEEEEEECH
T ss_pred CCCEEEEEEECCC----CCHHHHHHHHHH---HHHCCCCEEEEECCC
T ss_conf 9738999872698----788999999999---996798689998579
No 81
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima}
Probab=71.72 E-value=5 Score=19.05 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHC
Q ss_conf 989898999999985429702015412588998889999731679717983110236871022354310
Q gi|254780949|r 175 NYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 (418)
Q Consensus 175 ~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~n 243 (418)
+|.+--+-|=..+ +++-=|-|.|-.-|---=+-|.+.++-++..=...||+.+.+|.|+||--|.
T Consensus 198 ty~~a~vvdD~~~----~ithviRg~d~~~~t~~~~~l~~~lg~~~P~~~H~pli~~~~~~klSKR~g~ 262 (488)
T 3afh_A 198 TYNFAVVVDDHLM----RISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGA 262 (488)
T ss_dssp CHHHHHHHHHHHT----TCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSSBCCTTTSC
T ss_pred EEEEEEEECCCCC----CCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCCCCC
T ss_conf 0212248646447----8867844754546809999999982678982377223007998754532488
No 82
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, SGC, transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2
Probab=69.40 E-value=4.8 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEE
Q ss_conf 8769879887980480002377771479769997778548999
Q gi|254780949|r 372 LKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIIC 414 (418)
Q Consensus 372 I~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI 414 (418)
-..+|++|||++|+.+ ..+...| .|+.|+-.+|..
T Consensus 68 ~s~~gt~VNg~~i~~~-~~L~~GD-------~I~~G~~~~Frf 102 (104)
T 2g1l_A 68 CEGAETYVNGKLVTEP-LVLKSGN-------RIVMGKNHVFRF 102 (104)
T ss_dssp CTTCCEEETTEECCSC-EECCTTC-------EEEETTTEEEEE
T ss_pred CCCCCEEECCEECCCC-EECCCCC-------EEEECCCEEEEE
T ss_conf 9888719999490521-8989999-------999899769997
No 83
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A biosynthetic pathway, coenzyme A biosynthesis, cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus}
Probab=68.32 E-value=5.9 Score=18.58 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=24.5
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECH
Q ss_conf 498189998-437876202434899999999998598499998260
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGG 77 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~ 77 (418)
++++.+|-| ||| +|.||+-.+.. ..+....++++++..
T Consensus 2 ~~~IgifgGsFdP----iH~GHl~i~~~---a~~~~d~~~v~~~~~ 40 (168)
T 3f3m_A 2 EHTIAVIPGSFDP----ITYGHLDIIER---STDRFDEIHVCVLKN 40 (168)
T ss_dssp CCCEEEEEECCTT----CCHHHHHHHHH---HGGGSSEEEEEECC-
T ss_pred CCCEEEECCCCCC----CCHHHHHHHHH---HHHHCCCCEECCCCC
T ss_conf 9648997514688----77999999999---998689541533478
No 84
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=67.96 E-value=5 Score=19.03 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHC--------CCCCCCC
Q ss_conf 99999998542--9702015412588998889999731679717983110236871022354310--------1233345
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG--------AIWLNKE 250 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~n--------aIwLd~~ 250 (418)
.|||.+.-.|+ |++-=|-|.|-.-|--.=+-|.+.++-.+..-..+|+|.. +|.|||||... .-|-||.
T Consensus 273 tY~fA~vVDD~~~gITHVIRG~D~l~sT~~Q~~L~~aLg~~~P~~~H~~~L~~-~~~~lSkr~~~~~v~~g~~~gwddpr 351 (553)
T 3aii_A 273 MMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKM-DDVALSTSGAREGILRGEYSGWDDPR 351 (553)
T ss_dssp CHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC--------CHHHHHHHHHSSCCSTTCTT
T ss_pred EEEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHHHHCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56551264355542466985532102758999999975999875112213337-77544523321135157755555644
Q ss_pred C
Q ss_conf 7
Q gi|254780949|r 251 M 251 (418)
Q Consensus 251 ~ 251 (418)
+
T Consensus 352 l 352 (553)
T 3aii_A 352 L 352 (553)
T ss_dssp S
T ss_pred C
T ss_conf 2
No 85
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=67.89 E-value=2.8 Score=20.75 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=37.0
Q ss_pred HCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCC
Q ss_conf 22998999998514-9818999843787620243489999999999859849999826011144889
Q gi|254780949|r 20 QISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPS 85 (418)
Q Consensus 20 ~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPs 85 (418)
.+++..+++..+.. +...--+||=||-..||-||+--+. .-+.....+|+=|==--.|.|+..
T Consensus 4 ii~t~~el~~~~~~~~~~g~~igfVPTMGaLH~GHlsLI~---~A~~~~~~vvVSIFVNP~QF~~~e 67 (283)
T 3ag6_A 4 LITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVR---ESVSTNDITIVSVFVNPLQFGPNE 67 (283)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHH---HHHTTSSEEEEEECCCGGGCCTTS
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHHHHCCCEEEEEEECHHHCCCCC
T ss_conf 9888999999999999729919998588537499999999---998738978999987702248754
No 86
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=67.40 E-value=6 Score=18.49 Aligned_cols=91 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCC-CEEEEEECEEECCCCHHHHHHHHC--------CCCCCC
Q ss_conf 99999998542--9702015412588998889999731679-717983110236871022354310--------123334
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTP-KLFALTSPLLTTASGTKMGKTLSG--------AIWLNK 249 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~-~~~glT~PLLt~~dG~KmgKS~~n--------aIwLd~ 249 (418)
.|||.+.-.|+ +++-=+-|.|-+-|--.=+-|.+.++-+ +.+. ..|++.+.+|.+++|+-.. --|=++
T Consensus 210 tY~fA~vVDD~l~gITHViRG~D~l~st~~q~~l~~aLg~~~p~~~-h~~l~l~~~~~~lskrhl~~~v~~~~~~~~d~~ 288 (553)
T 1qtq_A 210 MYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQ-YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDP 288 (553)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEE-EEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCT
T ss_pred CCCHHCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0000021557764797898510033466799999972478888537-766575355543200224201357777766688
Q ss_pred CCCCHHHHHHHHHH--HCHHHHHHHHHHH
Q ss_conf 57997999998862--0788898799750
Q gi|254780949|r 250 EMTSPYNFWQYWRN--IDDADVVSFAKRL 276 (418)
Q Consensus 250 ~~tSPy~fyQf~~n--~~D~dV~kyLklf 276 (418)
..+|- +.++. ..-+.+.+|+.++
T Consensus 289 ~~~ti----~~~r~~G~~peAi~nfl~~l 313 (553)
T 1qtq_A 289 RMPTI----SGLRRRGYTAASIREFCKRI 313 (553)
T ss_dssp TSCBH----HHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHH----HHHHHCCCCHHHHHHHHHHH
T ss_conf 75028----89988699869999999983
No 87
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=67.35 E-value=4.7 Score=19.23 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 876202434899999999998598499998260111448898862102468899999999
Q gi|254780949|r 45 TASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIE 104 (418)
Q Consensus 45 T~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~ 104 (418)
|-|-+|.||+- .|++....|...|+.|..-.... +..-||.++.++-...++
T Consensus 9 ~FD~lH~GH~~---~l~~Ak~~gd~liV~v~~D~~~~-----~~k~~pi~~~~eR~~~l~ 60 (129)
T 1coz_A 9 TFDLLHWGHIK---LLERAKQLGDYLVVAISTDEFNL-----QKQKKAYHSYEHRKLILE 60 (129)
T ss_dssp CCCSCCHHHHH---HHHHHHTTSSEEEEEEECHHHHH-----HHTCCCSSCHHHHHHHHT
T ss_pred EECCCCHHHHH---HHHHHHHHCCEEEEEEECCCHHH-----CCCCCCCCCHHHHHHHHH
T ss_conf 54879989999---99999972998999970671020-----589988789999999986
No 88
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=67.30 E-value=3.9 Score=19.77 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=49.0
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHC
Q ss_conf 99999998542--9702015412588998889999731679717983110236871022354310
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~n 243 (418)
.|+|.+.-.|+ +++-=|-|.|-.-|.--=+-|.+-++-++.-=...|||.+.||+|+||.-|.
T Consensus 302 tY~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~alg~~~P~faHlPLIl~~dg~KLSKR~ga 366 (592)
T 3al0_C 302 TYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGA 366 (592)
T ss_dssp CHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTSSBCCTTTCS
T ss_pred CEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCCCCC
T ss_conf 10011245066578874406520214709999999982779971166110236898755556797
No 89
>3guz_A Pantothenate synthetase; pantothenate biosynthesis, substrate binding, competitive inhibition, rossmann fold; HET: PAF; 1.67A {Escherichia coli}
Probab=66.37 E-value=4.2 Score=19.53 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9989999985149-8189998437876202434899999999998598499998
Q gi|254780949|r 22 SNPRELDILCSQG-VVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLM 74 (418)
Q Consensus 22 ~~~~~l~~~l~~~-~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~li 74 (418)
++.++|++.+..- ...--+||=||--.||-||+-.+..-+ .....+|+=|
T Consensus 5 ~t~~~lr~~~~~~r~~g~~IgfVPTMGaLH~GHlsLI~~A~---~~~d~vvVSI 55 (176)
T 3guz_A 5 ETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAK---ARADVVAVSI 55 (176)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEEEECSCCCGGGHHHHHHHH---HTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH---HHCCEEEEEE
T ss_conf 66999999999999749949998387306599999999999---7599389996
No 90
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=65.94 E-value=1.6 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCEEEEEE-ECCCCCCCCHHHHHHHHHH
Q ss_conf 98189998-4378762024348999999
Q gi|254780949|r 34 GVVTAYIG-YDLTASSLHAGHLTQLMLL 60 (418)
Q Consensus 34 ~~~~~y~G-~DpT~~slH~G~l~~~~~l 60 (418)
+++.+|.| ||| .|.||+..+..+
T Consensus 2 kkI~ifgGsFdP----~h~GHl~i~~~~ 25 (177)
T 3h05_A 2 KKIAIFGSAFNP----PSLGHKSVIESL 25 (177)
T ss_dssp CEEEEEEECCSS----CCHHHHHHHTTC
T ss_pred CEEEEECCCCCH----HHHHHHHHHHHH
T ss_conf 579996654554----129999999999
No 91
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=64.93 E-value=6.8 Score=18.15 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 98189998-4378762024348999999999985984999982
Q gi|254780949|r 34 GVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMG 75 (418)
Q Consensus 34 ~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG 75 (418)
+++.+|-| ||| +|.||+..+.. .++.+ -.++++++
T Consensus 1 ~K~aifgGsFdP----iH~GHl~ia~~--a~~~~-d~~~v~~~ 36 (158)
T 1qjc_A 1 QKRAIYPGTFDP----ITNGHIDIVTR--ATQMF-DHVILAIA 36 (158)
T ss_dssp -CEEEEEECCTT----CCHHHHHHHHH--HHTTS-SEEEEEEE
T ss_pred CCEEEECCCCCC----CCHHHHHHHHH--HHHHC-CCCEEEEE
T ss_conf 968998007798----87999999999--99977-96679850
No 92
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=64.57 E-value=4.6 Score=19.25 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=29.2
Q ss_pred HCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEE
Q ss_conf 769879887980480002377771479769997778548
Q gi|254780949|r 373 KSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNH 411 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~ 411 (418)
..|.||+||++|++....+...|.+.-..+.+.+++...
T Consensus 133 ~~g~vY~Ng~kv~~~~~~l~~GD~l~i~g~~i~~~~~~i 171 (238)
T 1wv3_A 133 KNTDVYINYELQEQLTNKAYIGDHIYVEGIWLEVQADGL 171 (238)
T ss_dssp TTCCEEETTEECCSSEEEEETTCEEEETTEEEEECSSEE
T ss_pred CCCCEEECCEEEECCCCCCCCCCEEEECCEEEEEECCEE
T ss_conf 899788999994046110258999999989999967728
No 93
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=62.76 E-value=3.6 Score=19.94 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCC
Q ss_conf 7999999968920022998999998514-981899984378762024348999999999985984999982601114488
Q gi|254780949|r 6 SDFLSILSERGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDP 84 (418)
Q Consensus 6 ~~~~~~L~~Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDP 84 (418)
++....-...|-...+.+.++|+..+.. +...--+||=||--.||-||+-.+..-+ +..+..++.+.=. -.|.|++
T Consensus 10 ~~~~~~~~~~~~M~ii~t~~elr~~~~~~r~~g~~IgfVPTMGaLH~GHlsLI~~A~--~~~d~vvVSIFVN-P~QF~~~ 86 (314)
T 3inn_A 10 GTLEAQTQGPGSMQIIHTIEELRQALAPARQQGKKIGFVPTMGYLHKGHLELVRRAR--VENDVTLVSIFVN-PLQFGAN 86 (314)
T ss_dssp -----------CCEEECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHH--HHCSEEEEEECCC-GGGSCTT
T ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH--HHCCEEEEEEEEC-CCCCCCC
T ss_conf 541004799971699868999999999999739959998686207699999999998--7499499999777-7667887
Q ss_pred C
Q ss_conf 9
Q gi|254780949|r 85 S 85 (418)
Q Consensus 85 s 85 (418)
.
T Consensus 87 e 87 (314)
T 3inn_A 87 E 87 (314)
T ss_dssp S
T ss_pred C
T ss_conf 3
No 94
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=60.96 E-value=2.9 Score=20.62 Aligned_cols=186 Identities=11% Similarity=0.114 Sum_probs=81.1
Q ss_pred CCCHHHCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEECHHHCCCCCCCCCCCCC
Q ss_conf 8920022998999998514-98189998437876202434899999999998-598499998260111448898862102
Q gi|254780949|r 15 RGFIHQISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQK-TGHKPISLMGGGTSIIGDPSFRDESRR 92 (418)
Q Consensus 15 Rg~i~~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~-~Gh~~i~liG~~T~~IGDPsgk~~~R~ 92 (418)
+|-...+++..+++..... +...--+||=||-..||-||+-.+ +.-++ .+..+|+=|==--.|.|++.
T Consensus 9 ~~~m~i~~~~~e~~~~~~~~r~~g~~ig~VPTMGaLH~GHlsLI---~~A~~~~~d~vvVSIFVNP~QF~~~e------- 78 (301)
T 3cov_A 9 PGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALV---RAAKRVPGSVVVVSIFVNPMQFGAGG------- 78 (301)
T ss_dssp TTSCEEECSHHHHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHH---HHHHTSTTEEEEEEECCCGGGCCSSS-------
T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHH---HHHHHCCCCEEEEEEECCCCCCCCCH-------
T ss_conf 87349986899999999999982990899968721759999999---99865279979999962753478712-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCC
Q ss_conf 4688999999999999988765326777640233016-752343134688875223447875347888874035-68831
Q gi|254780949|r 93 MMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNE-TWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKR-EQSLS 170 (418)
Q Consensus 93 ~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~-~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~-~~~is 170 (418)
....--+++..-++..-.. +....+.-.. +-|.. ++... +.+ ..+.+.|+. .-|=.
T Consensus 79 -----D~~~YPr~le~D~~~l~~~---gvD~vF~P~~~eiyp~-~~~~~-------v~~------~~l~~~LeG~~RPgH 136 (301)
T 3cov_A 79 -----DLDAYPRTPDDDLAQLRAE---GVEIAFTPTTAAMYPD-GLRTT-------VQP------GPLAAELEGGPRPTH 136 (301)
T ss_dssp -----HHHHSCCCHHHHHHHHHHT---TCCEEECCCHHHHCTT-CSCSE-------EEC------CGGGGSGGGSSCTTH
T ss_pred -----HHCCCCCCHHHHHHHHHHC---CCEEEEECCHHHHCCC-CCCEE-------EEC------CCCCCCCCCCCCCCC
T ss_conf -----2011698817789999977---9939995356884357-86148-------734------532431457879852
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHH
Q ss_conf 578898989899999998542970201541258899888999973167971798311023687102235
Q gi|254780949|r 171 FLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGK 239 (418)
Q Consensus 171 ~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgK 239 (418)
|.-..=-+..=++-+ ..+.-+=|---|--...=+.+++.+.. ++-.+.+|.+=.+||==||.
T Consensus 137 F~GV~TVV~kLf~ii------~P~~a~FGeKD~QQl~iIk~mv~dl~~-~i~Ii~~pTvRe~dGLAlSS 198 (301)
T 3cov_A 137 FAGVLTVVLKLLQIV------RPDRVFFGEKDYQQLVLIRQLVADFNL-DVAVVGVPTVREADGLAMSS 198 (301)
T ss_dssp HHHHHHHHHHHHHHH------CCSEEEEETTSHHHHHHHHHHHHHTTC-CCEEEEECCCBCTTSCBCCT
T ss_pred HHHHHHHHHHHHHHC------CCCEEEEEHHHHHHHHHHHHHHHHHCC-CCCEEECCCEECCCCCEEEH
T ss_conf 317999999999746------986445500019999999999998389-95068657687689965125
No 95
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A*
Probab=60.66 E-value=8.1 Score=17.65 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred CEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 8189998-4378762024348999999999985984999982
Q gi|254780949|r 35 VVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMG 75 (418)
Q Consensus 35 ~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG 75 (418)
++.+|-| ||| +|.||+-.+... ++..- .+++.++
T Consensus 6 ~IaifgGsFdP----~H~GHl~ii~~a--~~~~D-~v~v~~~ 40 (170)
T 3k9w_A 6 VVAVYPGTFDP----LTRGHEDLVRRA--SSIFD-TLVVGVA 40 (170)
T ss_dssp CEEEEEECCTT----CCHHHHHHHHHH--HHHSS-EEEEEEE
T ss_pred EEEEECCCCCC----CCHHHHHHHHHH--HHHCC-CCEEECC
T ss_conf 89995856798----889999999999--99789-3427245
No 96
>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} SCOP: c.26.1.4 PDB: 3mue_A
Probab=60.10 E-value=8.1 Score=17.65 Aligned_cols=181 Identities=9% Similarity=0.101 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9989999985149-818999843787620243489999999999859849999826011144889886210246889999
Q gi|254780949|r 22 SNPRELDILCSQG-VVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQ 100 (418)
Q Consensus 22 ~~~~~l~~~l~~~-~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~ 100 (418)
++.+++++.+..- ...--+||=||--.||-||+--+..-+ .....+|+=|==--.|.|+ .|...
T Consensus 5 ~~~~~l~~~~~~~~~~g~~IgfVPTMGaLH~GHlsLi~~A~---~~~~~vvvSIFVNP~QF~~------------~eD~~ 69 (283)
T 1iho_A 5 ETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAK---ARADVVVVSIFVNPMQFDR------------PEDLA 69 (283)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEEEECSCCCHHHHHHHHHHH---HHCSEEEEEECCCGGGCSS------------HHHHH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH---HHCCCEEEEEECCCCCCCC------------HHHHH
T ss_conf 24999999999999749939998486307699999999999---7489389999537534787------------14432
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEH-HHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999999998876532677764023301-67523-431346888752234478753478888740356883157889898
Q gi|254780949|r 101 ENIEKIKGIFSSFIKYGTGKTDALMLNN-ETWLC-SIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMI 178 (418)
Q Consensus 101 ~n~~~~~~q~~~~~~~~~~~~~~~i~~N-~~W~~-~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~l 178 (418)
.--+++..-++..-.. +..+.+..+ .+-|. +.....++ +.+. ++..|. =+. -|=.|.-..=-+
T Consensus 70 ~YPr~~e~D~~ll~~~---gvD~vF~P~~~eiyp~~~~~~~~i-~~~~---l~~~Le---G~~-----RPgHF~GV~TVV 134 (283)
T 1iho_A 70 RYPRTLQEDCEKLNKR---KVDLVFAPSVKEIYPNGTETHTYV-DVPG---LSTMLE---GAS-----RPGHFRGVSTIV 134 (283)
T ss_dssp HSCCCHHHHHHHHHHT---TCSEEECCCHHHHCTTCSTTSCEE-ECTT---GGGSTH---HHH-----STTHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCEEEE-ECCC---CCCCCC---CCC-----CCCHHHHHHHHH
T ss_conf 2899868888999863---983898488202478655631476-2344---354246---786-----774077899999
Q ss_pred HHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHH
Q ss_conf 9899999998542970201541258899888999973167971798311023687102235
Q gi|254780949|r 179 LQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGK 239 (418)
Q Consensus 179 lQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgK 239 (418)
..=++.+ ..+ .-.=|---|--...=+.+++.+.. ++-.+.+|..=.+||-=||.
T Consensus 135 ~kLf~iv--~P~----~a~FGeKD~QQl~iIk~~v~dl~~-~i~Ii~~ptvRe~dGLAlSS 188 (283)
T 1iho_A 135 SKLFNLV--QPD----IACFGEKDFQQLALIRKMVADMGF-DIEIVGVPIMRAKDGLALSS 188 (283)
T ss_dssp HHHHHHH--CCS----EEEEETTSHHHHHHHHHHHHHHTC-CCEEEEECCCBCTTSCBCCG
T ss_pred HHHHHHC--CCC----EEEEECCHHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCEEEH
T ss_conf 9999645--887----457703069999999999998478-96148851377688731353
No 97
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=59.82 E-value=8.4 Score=17.55 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEECEEECCCCHHHHHHHHCC-C-C
Q ss_conf 8989898999999985429702015412588998889999731-----6797179831102368710223543101-2-3
Q gi|254780949|r 174 FNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERL-----KTPKLFALTSPLLTTASGTKMGKTLSGA-I-W 246 (418)
Q Consensus 174 F~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~-----~~~~~~glT~PLLt~~dG~KmgKS~~na-I-w 246 (418)
.+|.+--+-|=..+ +++--|-|.|=.-|---=+.|.+-+ +.++.--...||+.+.+|+|+||..+.. | +
T Consensus 194 PtY~~a~vvDD~~~----~ithviRg~d~~~~t~~q~~l~~~l~~~~~~~~~p~~~h~~l~~~~~g~klskr~~~~~~~~ 269 (498)
T 2ja2_A 194 PLYTLVNPCDDALM----KITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQSNLFA 269 (498)
T ss_dssp BCHHHHHHHHHHHT----TCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGGGBHHH
T ss_pred CCEEECEECCCCCC----CCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 33141545134467----87555078765774168999999998516688884487532330545662545698513999
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 33457997999998862
Q gi|254780949|r 247 LNKEMTSPYNFWQYWRN 263 (418)
Q Consensus 247 Ld~~~tSPy~fyQf~~n 263 (418)
+-+.=--|-.+..|...
T Consensus 270 ~r~~GylPeAl~NyLa~ 286 (498)
T 2ja2_A 270 HRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp HHHHTCCHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 99869988999999999
No 98
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=58.47 E-value=5.4 Score=18.79 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCC
Q ss_conf 2998999998514-9818999843787620243489999999999859849999826011144889
Q gi|254780949|r 21 ISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPS 85 (418)
Q Consensus 21 ~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPs 85 (418)
+++.++++..++. +...--+||=||-..||-||+--+..-+. ..+..+|.+-- --.|-|++.
T Consensus 4 i~~~~el~~~~~~~~~~g~~Ig~VPTMGaLH~GHlsLI~~A~~--~~d~vvVSIFV-NP~QF~~~e 66 (280)
T 2ejc_A 4 IETIEEMKKFSEEMREKKKTIGFVPTMGYLHEGHLSLVRRARA--ENDVVVVSIFV-NPTQFGPNE 66 (280)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEEECSCCCHHHHHHHHHHHH--HSSEEEEEECC-CGGGCCTTS
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--HCCCEEEEEEC-CCCCCCCCC
T ss_conf 7469999999999996499699983873065999999999986--38938999935-754356763
No 99
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=54.15 E-value=6.9 Score=18.09 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=21.0
Q ss_pred CEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8189998-437876202434899999999998598499998
Q gi|254780949|r 35 VVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLM 74 (418)
Q Consensus 35 ~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~li 74 (418)
++.+|.| ||| .|.||+-.+..++ ...+...|+++
T Consensus 3 ki~if~GsFdP----~h~GHl~i~~~a~--~~~~~~~V~~~ 37 (189)
T 2qtr_A 3 KIGIIGGTFDP----PHYGHLLIANEVY--HALNLEEVWFL 37 (189)
T ss_dssp EEEEEEECCSS----CCHHHHC-CHHHH--HHTTCSEEEEE
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHH--HHCCCCEEEEE
T ss_conf 69996647671----7499999999999--98499989999
No 100
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=53.25 E-value=11 Score=16.85 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=32.4
Q ss_pred CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHH
Q ss_conf 97020154125889988899997316797179831102368710223543
Q gi|254780949|r 192 DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTL 241 (418)
Q Consensus 192 ~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~ 241 (418)
+++.-+-|.|.+++.-.-.+..+..+..+......|++...+|.+.|-|+
T Consensus 86 ~~~~~v~g~d~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~ISST~ 135 (148)
T 3do8_A 86 DFEYLVVSPETYEMALKINQKREELGKRKITIVKVDWMMAEDGKPISSTR 135 (148)
T ss_dssp CCSEEEECTTTHHHHHHHHHHHHHHTCCCCEEEEEECCC-------CCCC
T ss_pred CCCEEEECCEEECCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEECHHH
T ss_conf 88677776678556788854798718876326777778779996886999
No 101
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=51.69 E-value=11 Score=16.70 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 498189998-4378762024348999999999985984999982601114488988621024688999999
Q gi|254780949|r 33 QGVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQEN 102 (418)
Q Consensus 33 ~~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n 102 (418)
++++.+|-| ||| +|.||+-.+..++ ...+.+-|.++-. ++|..|. .+.++.++-.+-
T Consensus 22 ~kkIgifgGSFdP----~H~GHl~i~~~a~--~~~~~d~V~~~p~-----~~n~~K~--~~~~~~~~Rl~m 79 (242)
T 1yum_A 22 GKRIGLFGGTFDP----VHIGHMRSAVEMA--EQFALDELRLLPN-----ARPPHRE--TPQVSAAQRLAM 79 (242)
T ss_dssp CCEEEEEEECCTT----CCHHHHHHHHHHH--HHHTCSEEEEEEC-----CCCGGGS--CTTCCHHHHHHH
T ss_pred CCEEEEECCCCCC----CHHHHHHHHHHHH--HHHCCCEEEEEEE-----CCCCCCC--CCCCCHHHHHHH
T ss_conf 9869996758571----5099999999999--9819998999983-----9798878--765588999999
No 102
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=51.00 E-value=12 Score=16.62 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEE-ECHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 876202434899999999998598499998-260111448898862102468899999999
Q gi|254780949|r 45 TASSLHAGHLTQLMLLFWLQKTGHKPISLM-GGGTSIIGDPSFRDESRRMMRSQEIQENIE 104 (418)
Q Consensus 45 T~~slH~G~l~~~~~l~~~q~~Gh~~i~li-G~~T~~IGDPsgk~~~R~~l~~~~i~~n~~ 104 (418)
|-|-||.||+-.| ++....|-..|+.| -|..... ...|+.++.++-..-++
T Consensus 9 ~FD~lH~GHi~~l---~~Ak~~gd~liV~v~~D~~~~~------~k~~p~~~~~~R~~~l~ 60 (132)
T 2b7l_A 9 TYDLLHYGHIELL---RRAREMGDYLIVALSTDEFNQI------KHKKSYYDYEQRKMMLE 60 (132)
T ss_dssp CCCSCCHHHHHHH---HHHHHTSSEEEEEEECHHHHHH------TTCCCSSCHHHHHHHHH
T ss_pred EECCCCHHHHHHH---HHHHHHCCEEEEEEECCHHHHH------HCCCCCCCHHHHHHHHH
T ss_conf 6788998999999---9999729999999816556553------14888560899987740
No 103
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=49.75 E-value=12 Score=16.50 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 98189998-43787620243489999999999859849999826
Q gi|254780949|r 34 GVVTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGG 76 (418)
Q Consensus 34 ~~~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~ 76 (418)
+++.+|-| ||| +|.||+..+..... .--+++++++.
T Consensus 2 ~~IgifgGsFdP----iH~GHl~l~~~a~~---~~D~v~v~~~~ 38 (169)
T 1o6b_A 2 ASIAVCPGSFDP----VTYGHLDIIKRGAH---IFEQVYVCVLN 38 (169)
T ss_dssp CCEEEEEECCTT----CCHHHHHHHHHHHH---HSSEEEEEECC
T ss_pred CEEEEEEECCCC----CCHHHHHHHHHHHH---HCCEEEECCCC
T ss_conf 828998225685----77999999999998---79986871234
No 104
>3d0r_A Protein CALG3; calicheamicin synthesis, glycosyltransferase, enediyne antibiotic; HET: PE4; 1.90A {Micromonospora echinospora} PDB: 3d0q_A*
Probab=48.98 E-value=12 Score=16.42 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHH-HHHCCCEEEEEEECH
Q ss_conf 202434899999999-998598499998260
Q gi|254780949|r 48 SLHAGHLTQLMLLFW-LQKTGHKPISLMGGG 77 (418)
Q Consensus 48 slH~G~l~~~~~l~~-~q~~Gh~~i~liG~~ 77 (418)
|--||||.|+..|-| |+.+||++.+-+..-
T Consensus 28 spgighlfpliqlawgfrtaghdvliavaeh 58 (398)
T 3d0r_A 28 SPGIGHLFPLIQLAWGFRTAGHDVLIAVAEH 58 (398)
T ss_dssp CSSTTSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEEHHH
T ss_conf 8974204588998761114686167640321
No 105
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp}
Probab=48.09 E-value=4.6 Score=19.29 Aligned_cols=63 Identities=22% Similarity=0.169 Sum_probs=36.6
Q ss_pred HCCCHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCC
Q ss_conf 22998999998514-98189998437876202434899999999998598499998260111448898
Q gi|254780949|r 20 QISNPRELDILCSQ-GVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSF 86 (418)
Q Consensus 20 ~~~~~~~l~~~l~~-~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsg 86 (418)
.+++.++++..+.. +...--+||=||--.||-||+--+..-+ ... .+|+-|==--.|.|++..
T Consensus 6 ii~~~~el~~~~~~~r~~~~~IgfVPTMGaLH~GHlsLI~~A~---~~~-~vvVSIFVNP~QF~~~eD 69 (285)
T 3mxt_A 6 VITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHAK---TQD-KVIVSIFVNPMQFGPNED 69 (285)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHT---TSS-EEEEEECCCGGGCCTTSC
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH---HCC-CEEEEEEECCCCCCCCCC
T ss_conf 9817999999999999759939998486306599999999997---659-869999836112787652
No 106
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=47.64 E-value=13 Score=16.29 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=23.3
Q ss_pred HCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEEEE
Q ss_conf 76987988798048000237777147976999777854899997
Q gi|254780949|r 373 KSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHL 416 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI~i 416 (418)
..+|++|||++|......|...| .|+.|+-..++++.
T Consensus 85 S~nGt~VNg~~i~~~~~~L~~GD-------~I~iG~~~~~~f~~ 121 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGD-------RIVFGKSCSFLFKY 121 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSE-------EEEETTTEEEEEEE
T ss_pred CCCCCEECCEECCCCCEECCCCC-------EEEECCCEEEEEEE
T ss_conf 87803799999258865999998-------99989960799997
No 107
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=47.61 E-value=13 Score=16.28 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=21.7
Q ss_pred EEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEEEEC
Q ss_conf 189998-43787620243489999999999859-849999826
Q gi|254780949|r 36 VTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTG-HKPISLMGG 76 (418)
Q Consensus 36 ~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~G-h~~i~liG~ 76 (418)
..+|+| ||| +|.||+-.+...+. ..+ +++++++..
T Consensus 5 ~ai~gGSFNP----~h~gHl~~~~~a~~--~~~~d~v~~~p~~ 41 (213)
T 1k4m_A 5 QALFGGTFDP----VHYGHLKPVETLAN--LIGLTRVTIIPNN 41 (213)
T ss_dssp EEEEEECCTT----CCHHHHHHHHHHHH--HHTCSCEEEEECS
T ss_pred EEEEECCCCC----CHHHHHHHHHHHHH--HCCCCEEEEEEEC
T ss_conf 7997056082----64999999999999--8099999999948
No 108
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=47.27 E-value=4.8 Score=19.17 Aligned_cols=75 Identities=9% Similarity=0.205 Sum_probs=48.6
Q ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCC-CC-CCCHHHHHHHHHHHCHHHHHHH
Q ss_conf 201541258899888999973167971798311023687102235431012333-45-7997999998862078889879
Q gi|254780949|r 195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLN-KE-MTSPYNFWQYWRNIDDADVVSF 272 (418)
Q Consensus 195 iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd-~~-~tSPy~fyQf~~n~~D~dV~ky 272 (418)
+.-|+| +.+.++..++.+-+.++ +++|+.....=+..++... .|.+. |+ ..+.-.||..|-.++|++|..+
T Consensus 130 i~TG~T-----m~aa~~~L~~~ga~~v~-~a~pv~~~~~~~~l~~~~D-~v~~~~p~~f~~v~~~y~~f~~v~d~ev~~~ 202 (208)
T 1wd5_A 130 VATGAS-----MEAALSVVFQEGPRRVV-VAVPVASPEAVERLKARAE-VVALSVPQDFAAVGAYYLDFGEVTDEDVEAI 202 (208)
T ss_dssp BSSCHH-----HHHHHHHHHTTCCSEEE-EEEEEBCHHHHHHHHTTSE-EEEEECCTTCCCGGGGBSCCCCCCHHHHHHH
T ss_pred CCHHHH-----HHHHHHHHHHCCCCEEE-EEEEECCHHHHHHCCCCCC-EEEECCCCCHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 335899-----99999999976999899-9998568778875166799-8998578301102401576787999999999
Q ss_pred HHHH
Q ss_conf 9750
Q gi|254780949|r 273 AKRL 276 (418)
Q Consensus 273 Lklf 276 (418)
|+-+
T Consensus 203 L~~~ 206 (208)
T 1wd5_A 203 LLEW 206 (208)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 9985
No 109
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=46.94 E-value=13 Score=16.22 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=29.1
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHC
Q ss_conf 89998437876202434899999999998598499998260111
Q gi|254780949|r 37 TAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI 80 (418)
Q Consensus 37 ~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~ 80 (418)
...+-.|+.|.++-=--+- -.+.+.+..|..++++|||+-|.
T Consensus 67 ~~~I~LDe~Gk~lsS~~fA--~~l~~~~~~g~~i~fiIGGa~G~ 108 (155)
T 1ns5_A 67 NRIVTLDIPGKPWDTPQLA--AELERWKLDGRDVSLLIGGPEGL 108 (155)
T ss_dssp SEEEEEEEEEECCCHHHHH--HHHHHHHHHCSCEEEEECBTTBC
T ss_pred CCEEEECCCCCCCCHHHHH--HHHHHHHHCCCCEEEEEECCCCC
T ss_conf 8589967899615789999--99999996599879999678755
No 110
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=44.89 E-value=14 Score=16.01 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred HCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEE
Q ss_conf 769879887980480002377771479769997778548999
Q gi|254780949|r 373 KSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIIC 414 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI 414 (418)
..++++|||++|.++ ..|...| .|+.|+-.+|..
T Consensus 78 s~~~t~VNG~~v~~~-~~L~~gD-------~I~~G~~~~Frf 111 (120)
T 1wln_A 78 MDAETYVDGQRISET-TMLQSGM-------RLQFGTSHVFKF 111 (120)
T ss_dssp SSSCEEETSCBCSSC-EEECTTC-------EEEETTTEEEEE
T ss_pred CCCCEEECCCEECCE-EECCCCC-------EEEECCCEEEEE
T ss_conf 898528888795732-6989999-------999899769999
No 111
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.09 E-value=9.2 Score=17.30 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=22.1
Q ss_pred HCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEE
Q ss_conf 769879887980480002377771479769997778548999
Q gi|254780949|r 373 KSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIIC 414 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI 414 (418)
..++++|||++|.. ...|...| .|+.|+-.+|..
T Consensus 78 s~~~t~VNG~~I~~-~~~L~~GD-------~I~~G~~~~f~f 111 (130)
T 2eh0_A 78 ERSETYVNGKRVSQ-PVQLRSGN-------RIIMGKNHVFRF 111 (130)
T ss_dssp SSSCEEETTEECCS-CEECCTTC-------BCEESSSCCCEE
T ss_pred CCCCEEECCEECCC-CEECCCCC-------EEEECCCEEEEE
T ss_conf 98984899989676-37999999-------999899838999
No 112
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=40.74 E-value=17 Score=15.60 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=31.1
Q ss_pred EEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 189998-43787620243489999999999859849999826011144889886210246889999999
Q gi|254780949|r 36 VTAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENI 103 (418)
Q Consensus 36 ~~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~ 103 (418)
..+|.| ||| +|.||+-.+..... .+ .+++++|+...- ....+...+.++-.+..
T Consensus 5 ~gl~~G~FdP----~H~GH~~l~~~a~~--~~-~~v~v~i~~~~~-------~~~~~~~~~~~~r~~~i 59 (181)
T 1ej2_A 5 RGLLVGRMQP----FHRGHLQVIKSILE--EV-DELIICIGSAQL-------SHSIRDPFTAGERVMML 59 (181)
T ss_dssp EEEEEECCTT----CCHHHHHHHHHHTT--TC-SEEEEEECSTTC-------CSSSSSCSCHHHHHHHH
T ss_pred EEEEEECCCC----CCHHHHHHHHHHHH--HC-CCCEEEEECCCC-------CCCCCCCCCHHHHHHHH
T ss_conf 9999864698----99999999999999--77-998899833666-------77755443099999999
No 113
>1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=39.85 E-value=17 Score=15.51 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=27.2
Q ss_pred EEEEEE-ECCCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEEECHHHCCCCCCCCC
Q ss_conf 189998-43787620243489999999-999859849999826011144889886
Q gi|254780949|r 36 VTAYIG-YDLTASSLHAGHLTQLMLLF-WLQKTGHKPISLMGGGTSIIGDPSFRD 88 (418)
Q Consensus 36 ~~~y~G-~DpT~~slH~G~l~~~~~l~-~~q~~Gh~~i~liG~~T~~IGDPsgk~ 88 (418)
+-+++| ||| .|.||+-.+...+ +|...+-. .++.....-.+||-.|.
T Consensus 8 vlv~~GSFdP----~H~GHl~i~~~a~~~~~~~~~~--~~~~~~~~p~~~~~~k~ 56 (252)
T 1nup_A 8 VLLACGSFNP----ITNMHLRMFEVARDHLHQTGMY--QVIQGIISPVNDTYGKK 56 (252)
T ss_dssp EEEEEECCTT----CCHHHHHHHHHHHHHHHHTTSE--EEEEEEEEECCTTCSSS
T ss_pred EEEEECCCCH----HHHHHHHHHHHHHHHHCCCCCE--EEEEEEECCCCCCCCCC
T ss_conf 9997055787----5899999999999986746655--67777875888987678
No 114
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consortium, SGC, ATP-binding, coiled coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=38.24 E-value=18 Score=15.35 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=23.4
Q ss_pred HCCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEEE
Q ss_conf 7698798879804800023777714797699977785489999
Q gi|254780949|r 373 KSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICH 415 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI~ 415 (418)
..++++|||++|+++ ..|...| .|+.|+-.+|...
T Consensus 88 s~~~t~vNG~~i~~~-~~L~~GD-------~I~iG~~~~Frf~ 122 (124)
T 3fm8_A 88 KNTRTFVNGSSVSSP-IQLHHGD-------RILWGNNHFFRLN 122 (124)
T ss_dssp TTCCEEETTEECCSC-EEECTTC-------EEEETTTEEEEEE
T ss_pred CCCCEEECCCEECCC-EECCCCC-------EEEECCCEEEEEE
T ss_conf 998678788695544-7999999-------9998996199995
No 115
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=33.67 E-value=17 Score=15.57 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=6.5
Q ss_pred HHHHCCCEEEEEEECHHH
Q ss_conf 999859849999826011
Q gi|254780949|r 62 WLQKTGHKPISLMGGGTS 79 (418)
Q Consensus 62 ~~q~~Gh~~i~liG~~T~ 79 (418)
.|...|.+|.+|-||+.+
T Consensus 121 ~l~~~g~~v~iL~GG~~~ 138 (154)
T 1hzm_A 121 KLKDEGCRAFYLEGGFSK 138 (154)
T ss_dssp HHHHTTCCCEECCCCHHH
T ss_pred HHHHCCCCEEEEECCHHH
T ss_conf 998649938998066899
No 116
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=33.37 E-value=22 Score=14.85 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHH-HHH-HHCCCEEEEEEE
Q ss_conf 4348999999-999-985984999982
Q gi|254780949|r 51 AGHLTQLMLL-FWL-QKTGHKPISLMG 75 (418)
Q Consensus 51 ~G~l~~~~~l-~~~-q~~Gh~~i~liG 75 (418)
-||+.|++.| +++ +..||+|.++..
T Consensus 17 ~GH~~P~l~La~~L~~~rGH~Vt~it~ 43 (480)
T 2vch_A 17 MGHLIPLVEFAKRLVHLHGLTVTFVIA 43 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 767999999999999748998999968
No 117
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=32.96 E-value=22 Score=14.80 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=21.5
Q ss_pred EEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECH
Q ss_conf 9998-437876202434899999999998598499998260
Q gi|254780949|r 38 AYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGG 77 (418)
Q Consensus 38 ~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~ 77 (418)
+|-| ||| +|.||+-.+..... ...+++++++..
T Consensus 4 ifgGsFdP----~H~GHl~ii~~a~~---~~d~v~i~~~~~ 37 (160)
T 1od6_A 4 VYPGSFDP----LTNGHLDVIQRASR---LFEKVTVAVLEN 37 (160)
T ss_dssp EEEECCTT----CCHHHHHHHHHHHH---HSSEEEEEEECC
T ss_pred EEEECCCC----CCHHHHHHHHHHHH---HCCEEEEECCCC
T ss_conf 95025797----68999999999998---799999952677
No 118
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=32.64 E-value=22 Score=14.77 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.9
Q ss_pred HCCCCEECCCCHHHH
Q ss_conf 429702015412588
Q gi|254780949|r 190 NYDCRLQMGGSDQWG 204 (418)
Q Consensus 190 ~~~~~iqiGGsDQwg 204 (418)
+...+.=+.++|...
T Consensus 179 ~~~~~ai~~~~d~~a 193 (276)
T 3jy6_A 179 NDQKTVAFALKERWL 193 (276)
T ss_dssp SSSCEEEEESSHHHH
T ss_pred CCCCCEEECCCHHHH
T ss_conf 014330100667999
No 119
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=31.17 E-value=23 Score=14.61 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=21.5
Q ss_pred HHHHHHHHHH-HHHHHCCCEEEEEEEC
Q ss_conf 4348999999-9999859849999826
Q gi|254780949|r 51 AGHLTQLMLL-FWLQKTGHKPISLMGG 76 (418)
Q Consensus 51 ~G~l~~~~~l-~~~q~~Gh~~i~liG~ 76 (418)
-||..|+..| ++|++.||+|.++..+
T Consensus 11 ~Ghv~P~lala~~L~~~Gh~V~~~~~~ 37 (415)
T 1iir_A 11 RGDTEPLVALAVRVRDLGADVRMCAPP 37 (415)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 468999999999999879989999583
No 120
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=30.50 E-value=24 Score=14.54 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEEE-ECCCCCCCCHHHHHHHHHHH-HHHHCC
Q ss_conf 189998-43787620243489999999-999859
Q gi|254780949|r 36 VTAYIG-YDLTASSLHAGHLTQLMLLF-WLQKTG 67 (418)
Q Consensus 36 ~~~y~G-~DpT~~slH~G~l~~~~~l~-~~q~~G 67 (418)
+-+|+| ||| .|.||+......+ .+...+
T Consensus 10 vll~~GSFdP----~H~GHl~ia~~a~~~l~~~~ 39 (279)
T 1kqn_A 10 VLLACGSFNP----ITNMHLRLFELAKDYMNGTG 39 (279)
T ss_dssp EEEEEECCTT----CCHHHHHHHHHHHHHHHHTS
T ss_pred EEEECCCCCC----CHHHHHHHHHHHHHHHHHCC
T ss_conf 9996245373----42999999999999973425
No 121
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=30.35 E-value=18 Score=15.32 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=28.6
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCC
Q ss_conf 149818999843787620243489999999999859849999826011144
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIG 82 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IG 82 (418)
..+++-+||+ + |.. .......|++.|++++.|-||..++..
T Consensus 54 ~d~~iv~yC~---~------G~r-S~~aa~~L~~~Gf~v~~l~GG~~~W~~ 94 (108)
T 3gk5_A 54 RDKKYAVICA---H------GNR-SAAAVEFLSQLGLNIVDVEGGIQSWIE 94 (108)
T ss_dssp TTSCEEEECS---S------SHH-HHHHHHHHHTTTCCEEEETTHHHHHHH
T ss_pred CCCCEEEECC---C------CHH-HHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 7777678889---9------849-999999999849988998598999988
No 122
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=28.88 E-value=26 Score=14.36 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02434899999999998598499998260111448898862102468899999999
Q gi|254780949|r 49 LHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIE 104 (418)
Q Consensus 49 lH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~ 104 (418)
.+-.|+-..+.+.+=--..+.-|++=..++|.+-.|.|......--.-+.++.|++
T Consensus 26 Vw~~N~eee~~~I~~~I~~~~fVAiDtEFpGiv~~p~~~~~~t~d~rY~~lr~nVd 81 (333)
T 2p51_A 26 VWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVD 81 (333)
T ss_dssp ECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54436999999999998459989995331772567876668978999999997542
No 123
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=28.30 E-value=26 Score=14.30 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=30.0
Q ss_pred EEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89998-4378762024348999999999985984999982601114488988621024688999999
Q gi|254780949|r 37 TAYIG-YDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQEN 102 (418)
Q Consensus 37 ~~y~G-~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n 102 (418)
.+|.| ||| +|.||+-.+... .+...+++++++.... .....+.++.++-.+.
T Consensus 3 gi~~GsFdP----~H~GH~~li~~a---~~~~d~v~v~~~~~~~-------~~~~~~~~~~~~R~~m 55 (168)
T 1f9a_A 3 GFIIGRFQP----FHKGHLEVIKKI---AEEVDEIIIGIGSAQK-------SHTLENPFTAGERILM 55 (168)
T ss_dssp EEEEECCTT----CCHHHHHHHHHH---TTTCSEEEEEECSTTC-------CSSSSCCSCHHHHHHH
T ss_pred EEEECCCCC----CCHHHHHHHHHH---HHHCCCCEEEECCCCC-------CCCCCCCCCHHHHHHH
T ss_conf 899524598----999999999999---9978974898047860-------1367888899999999
No 124
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=28.26 E-value=21 Score=14.94 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=28.0
Q ss_pred HHHHHHHCCCCCCC-CCCCHHHHHHHHHH-HCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 22354310123334-57997999998862-07888987997506888567555433
Q gi|254780949|r 236 KMGKTLSGAIWLNK-EMTSPYNFWQYWRN-IDDADVVSFAKRLTTLPMSEIDRMAK 289 (418)
Q Consensus 236 KmgKS~~naIwLd~-~~tSPy~fyQf~~n-~~D~dV~kyLklfT~l~l~EI~~l~~ 289 (418)
...-+|-+.+|-.= ..+.--.++++|+| +.|.++-.+|+..-.+....|+.|++
T Consensus 13 pL~~~Ei~~LW~~~~~~~~~~~~~~~f~~~a~D~eiK~~l~~~~~~~~~~i~~le~ 68 (171)
T 2rbd_A 13 PLHYGEVFSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAMQDENHQLEE 68 (171)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71299999999999999999999999999849899999999999999999999999
No 125
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=27.80 E-value=26 Score=14.32 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHH-HHHHHCCCEEEEEE
Q ss_conf 4348999999-99998598499998
Q gi|254780949|r 51 AGHLTQLMLL-FWLQKTGHKPISLM 74 (418)
Q Consensus 51 ~G~l~~~~~l-~~~q~~Gh~~i~li 74 (418)
-||..|++.| ++|++.||+|.++.
T Consensus 18 ~gHv~P~l~La~~L~~rGH~Vt~~~ 42 (456)
T 2c1x_A 18 STHAAPLLAVVRRLAAAAPHAVFSF 42 (456)
T ss_dssp SSSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7589999999999997799689997
No 126
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D}
Probab=26.84 E-value=28 Score=14.13 Aligned_cols=35 Identities=9% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCEEECCEEECCCCCEECHHHHCCCCEEEEEECCEEEEEEEE
Q ss_conf 6987988798048000237777147976999777854899997
Q gi|254780949|r 374 SNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHL 416 (418)
Q Consensus 374 qGgV~IN~~kI~d~~~~i~~~d~~~~~~liLr~GKK~~~lI~i 416 (418)
.+|++|||++|.. ...+...| .|++|+..|.++..
T Consensus 68 ~nGt~vNg~~v~~-~~~L~~gd-------~i~iG~~~~~~~~~ 102 (106)
T 3gqs_A 68 KNGVIVEGRKIEH-QSTLSANQ-------VVALGTTLFLLVDY 102 (106)
T ss_dssp SSCCEETTEECSS-EEECCTTC-------CEEETTEEEEEEEE
T ss_pred CCCCEECCEECCC-EEECCCCC-------EEEECCEEEEEEEC
T ss_conf 7785699999477-38999999-------99998999999926
No 127
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=25.55 E-value=29 Score=13.98 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHH-HHHHCCCEEEEEEEC
Q ss_conf 243489999999-999859849999826
Q gi|254780949|r 50 HAGHLTQLMLLF-WLQKTGHKPISLMGG 76 (418)
Q Consensus 50 H~G~l~~~~~l~-~~q~~Gh~~i~liG~ 76 (418)
-.||+.|.+.|- .+.+.||+|.++..+
T Consensus 14 g~GH~~p~l~la~~L~~rGh~V~~~~~~ 41 (402)
T 3ia7_A 14 GHGHVYPSLGLVSELARRGHRITYVTTP 41 (402)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 4647999999999999888989999781
No 128
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=25.50 E-value=29 Score=13.97 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.4
Q ss_pred CHHHHHHHHHH-HHHHHCCCEEEEEEECH
Q ss_conf 24348999999-99998598499998260
Q gi|254780949|r 50 HAGHLTQLMLL-FWLQKTGHKPISLMGGG 77 (418)
Q Consensus 50 H~G~l~~~~~l-~~~q~~Gh~~i~liG~~ 77 (418)
--||..|++.| +.+++.||+|.++.++.
T Consensus 22 ~~GHv~p~l~la~~L~~rGH~V~v~~~~~ 50 (424)
T 2iya_A 22 GHGHVNPSLGIVQELVARGHRVSYAITDE 50 (424)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 16379999999999998889899996841
No 129
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695}
Probab=24.80 E-value=30 Score=13.89 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=29.1
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCC
Q ss_conf 49818999843787620243489999999999859849999826011144
Q gi|254780949|r 33 QGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIG 82 (418)
Q Consensus 33 ~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IG 82 (418)
.+++-+||. + |+. ..+....|++.|++.+.|-||..++..
T Consensus 56 ~~~iiv~C~---s------G~r-S~~a~~~L~~~G~~~v~l~GG~~~W~~ 95 (110)
T 2k0z_A 56 DKKVLLHCR---A------GRR-ALDAAKSMHELGYTPYYLEGNVYDFEK 95 (110)
T ss_dssp SSCEEEECS---S------SHH-HHHHHHHHHHTTCCCEEEESCGGGTTT
T ss_pred CCCEEEECC---C------CHH-HHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 986899889---9------848-999999999859987995682999998
No 130
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=24.32 E-value=31 Score=13.83 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHH-HHHHCCCEEEEEEECH
Q ss_conf 243489999999-9998598499998260
Q gi|254780949|r 50 HAGHLTQLMLLF-WLQKTGHKPISLMGGG 77 (418)
Q Consensus 50 H~G~l~~~~~l~-~~q~~Gh~~i~liG~~ 77 (418)
| ||+.|.+.+- .|.+.||+|.++-++.
T Consensus 31 ~-GH~~p~l~la~~L~~rGH~V~v~t~~~ 58 (416)
T 3iaa_A 31 H-GLILPTLTVVTELVRRGHRVSYVTAGG 58 (416)
T ss_dssp H-HHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred H-HHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 6-379999999999997889899996823
No 131
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=23.08 E-value=32 Score=13.67 Aligned_cols=83 Identities=18% Similarity=0.056 Sum_probs=57.1
Q ss_pred HHHHHHHHHHC--CCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHH------CCC--CCCCC
Q ss_conf 99999998542--970201541258899888999973167971798311023687102235431------012--33345
Q gi|254780949|r 181 AYDFVELAKNY--DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLS------GAI--WLNKE 250 (418)
Q Consensus 181 ayD~~~L~~~~--~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~------naI--wLd~~ 250 (418)
.|||.+.-.|+ +++-=|-|.|-.-|--.=+-|.+.++-++.--...|++.+.+|.+|||.-. +.| |-||.
T Consensus 250 tYdfA~vVDD~l~gITHVIRg~E~~~~tp~q~~L~~aLg~~~pp~~h~f~rLn~~~t~lSKRkl~~lv~~~~v~gWDDpR 329 (851)
T 2hz7_A 250 AYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPR 329 (851)
T ss_dssp CHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTT
T ss_pred CCCCCEEECHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21135141365559977984141222488887676324689997367520431466655776531235567546766764
Q ss_pred CC----------CHHHHHHHHHH
Q ss_conf 79----------97999998862
Q gi|254780949|r 251 MT----------SPYNFWQYWRN 263 (418)
Q Consensus 251 ~t----------SPy~fyQf~~n 263 (418)
+. .|-.+..|+..
T Consensus 330 ~~Tl~glRrrGy~PeAi~nfl~~ 352 (851)
T 2hz7_A 330 MPTLRAQRRLGVTPEAVRAFAAQ 352 (851)
T ss_dssp SSBHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 10099999869989999999999
No 132
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=22.77 E-value=33 Score=13.63 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-HHHHHCCCEEEE
Q ss_conf 4348999999-999985984999
Q gi|254780949|r 51 AGHLTQLMLL-FWLQKTGHKPIS 72 (418)
Q Consensus 51 ~G~l~~~~~l-~~~q~~Gh~~i~ 72 (418)
-||+.|++.| ++|++.||++.+
T Consensus 20 ~GH~~P~l~la~~L~~rGH~V~v 42 (463)
T 2acv_A 20 IGHLASALEFAKLLTNHDKNLYI 42 (463)
T ss_dssp TTTHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 86899999999999977998599
No 133
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A*
Probab=22.48 E-value=33 Score=13.60 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=17.5
Q ss_pred HHHHHHHHH-HHHHHCCCEEEEEE
Q ss_conf 348999999-99998598499998
Q gi|254780949|r 52 GHLTQLMLL-FWLQKTGHKPISLM 74 (418)
Q Consensus 52 G~l~~~~~l-~~~q~~Gh~~i~li 74 (418)
||..|++.| ++|++.||+|.++.
T Consensus 25 gH~~P~l~la~~L~~rGH~Vt~~~ 48 (454)
T 3hbf_A 25 THAAPLLSLVKKIATEAPKVTFSF 48 (454)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 489999999999997899579998
No 134
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans}
Probab=22.16 E-value=34 Score=13.56 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=32.7
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCC--CCCCCCCCCC
Q ss_conf 14981899984378762024348999999999985984999982601114--4889886210
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSII--GDPSFRDESR 91 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~I--GDPsgk~~~R 91 (418)
..+++.+||+ ..++. -.......|+..|+++..|-||..++. |=|..++.+.
T Consensus 71 ~~k~ivvyC~-~~~~~-------~s~~aa~~L~~~G~~v~~l~GG~~aW~~~G~pve~~~~~ 124 (144)
T 3nhv_A 71 KEKVIITYCW-GPACN-------GATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGA 124 (144)
T ss_dssp TTSEEEEECS-CTTCC-------HHHHHHHHHHHTTCEEEEEESHHHHHHHTTCCCBSSSGG
T ss_pred CCCEEEEEEC-CCCCH-------HHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCCCC
T ss_conf 6754999976-89861-------999999999986998589068899999885974388888
No 135
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=21.83 E-value=34 Score=13.51 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=20.8
Q ss_pred CHHHHHHHH-HHHHHHHCCCEEEEEEECH
Q ss_conf 243489999-9999998598499998260
Q gi|254780949|r 50 HAGHLTQLM-LLFWLQKTGHKPISLMGGG 77 (418)
Q Consensus 50 H~G~l~~~~-~l~~~q~~Gh~~i~liG~~ 77 (418)
+-||+.|++ .-+.|.+.||+|.++.++.
T Consensus 17 ~~GH~~p~l~la~~L~~~GH~V~~~t~~~ 45 (430)
T 2iyf_A 17 AHGHVNPSLEVIRELVARGHRVTYAIPPV 45 (430)
T ss_dssp CHHHHGGGHHHHHHHHHTTCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 45079999999999997889899997821
No 136
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=21.40 E-value=35 Score=13.46 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.7
Q ss_pred CHHHHHHHHHH-HHHHHCCCEEEEEEE
Q ss_conf 24348999999-999985984999982
Q gi|254780949|r 50 HAGHLTQLMLL-FWLQKTGHKPISLMG 75 (418)
Q Consensus 50 H~G~l~~~~~l-~~~q~~Gh~~i~liG 75 (418)
=-||+.|++.| +.+.+.||+|.++..
T Consensus 18 ~~gH~~P~~~la~~L~~rGH~Vt~~~~ 44 (482)
T 2pq6_A 18 VQGHINPLFKLAKLLHLRGFHITFVNT 44 (482)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 254799999999999978994999928
No 137
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.63 E-value=36 Score=13.35 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=25.2
Q ss_pred HCCCEEECCEEECCCC-CEECHHHHCCCCEEEEEECCEEEEEEEEC
Q ss_conf 7698798879804800-02377771479769997778548999971
Q gi|254780949|r 373 KSNAIKINNSIISNEK-LQIKLQDFDSTGNIKLSFGKKNHIICHLC 417 (418)
Q Consensus 373 ~qGgV~IN~~kI~d~~-~~i~~~d~~~~~~liLr~GKK~~~lI~iv 417 (418)
..+|++||++++.... ..|...| .|++|.-.+..+.++
T Consensus 74 S~nGt~vng~~l~~~~~~~L~~Gd-------~i~iG~~~~~~v~~~ 112 (118)
T 1uht_A 74 SSNGTLLNSNALDPETSVNLGDGD-------VIKLGEYTSILVNFV 112 (118)
T ss_dssp CSSCCEESSSBCCTTCEEECCTTE-------EEEETTTEEEEEEEE
T ss_pred CCCCCEECCEECCCCCEEECCCCC-------EEEECCEEEEEEEEC
T ss_conf 778847999991799778999999-------999999999999714
No 138
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=20.25 E-value=37 Score=13.30 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=26.0
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCC
Q ss_conf 14981899984378762024348999999999985984999982601114
Q gi|254780949|r 32 SQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSII 81 (418)
Q Consensus 32 ~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~I 81 (418)
..+++-+||. ++ +. .-...+.|++.|++++.|-||..++.
T Consensus 52 ~~~~iv~~C~---~g------~r-s~~aa~~L~~~G~~~~~l~GG~~aw~ 91 (94)
T 1wv9_A 52 PRRPLLLVCE---KG------LL-SQVAALYLEAEGYEAMSLEGGLQALT 91 (94)
T ss_dssp CSSCEEEECS---SS------HH-HHHHHHHHHHHTCCEEEETTGGGCC-
T ss_pred CCCCEEEECC---CC------CC-HHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 3444367779---98------24-99999999986993999542899987
Done!