RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(418 letters)
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation,
structure based inhibitor design, ligase; HET: 485;
2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB:
1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 387 bits (994), Expect = e-108
Identities = 145/418 (34%), Positives = 223/418 (53%), Gaps = 12/418 (2%)
Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64
+ + L RG I+Q ++ + ++ L ++ VT Y G D TA SLH GHL + L Q
Sbjct: 2 TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQ 61
Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124
+ GH+PI L+GGGT +IGDPS + E R + +++ +NIE I + ++GT A+
Sbjct: 62 EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHG-AV 120
Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDF 184
++NN WL I I LR+ G VN ML +S++SRL+ +S+ EF Y ILQA DF
Sbjct: 121 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE--HGISYTEFTYTILQAIDF 178
Query: 185 VELAKNYDCRLQMGGSDQWGNIICGIDL-GERLKTPKLFALTSPLLTTASGTKMGKTLSG 243
L + +C++Q+GGSDQWGNI GI+L + LT PL+T + G K GK+ SG
Sbjct: 179 GHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238
Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMA--KLQGKEINEAKKI 301
A+WL+ E TSPY F+Q+W N D DV+ F K T L EIDR+ K + + EA+K
Sbjct: 239 AVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKT 298
Query: 302 IATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEV------SRGMGLLTL 355
+A E+T +HG + A + F + S + +V + ++ +
Sbjct: 299 LAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEV 358
Query: 356 IVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413
+++ G + S +AR + + AI IN + + +D + GKK + +
Sbjct: 359 LIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFM 416
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 320 bits (820), Expect = 5e-88
Identities = 152/416 (36%), Positives = 230/416 (55%), Gaps = 11/416 (2%)
Query: 7 DFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT 66
D L+ L RG ++Q ++ L L ++ VT Y G+D TA SLH GHL ++ + Q+
Sbjct: 2 DLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61
Query: 67 GHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALML 126
GH+PI+L+GG T +IGDPS + R + + ++ +IK F+ + A +
Sbjct: 62 GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIK 121
Query: 127 NNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVE 186
NN W+ + I LR++G FSVN M++ ESV+SR++ +SF EF+YM+LQAYDF+
Sbjct: 122 NNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIE--TGISFTEFSYMMLQAYDFLR 179
Query: 187 LAKNYDCRLQMGGSDQWGNIICGIDLGERLK-TPKLFALTSPLLTTASGTKMGKTLSGAI 245
L + CRLQ+GGSDQWGNI G++L + K + F LT PL+T A GTK GKT SG I
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTI 239
Query: 246 WLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAK--LQGKEINEAKKIIA 303
WL+KE TSPY F+Q+W N DD DV+ + K T L EI+ + + + E A+K +A
Sbjct: 240 WLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLA 299
Query: 304 TEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEV------SRGMGLLTLIV 357
E+T +VHG E +A + F I + I +V + L+ L+V
Sbjct: 300 EEVTKLVHGEEALRQAIRISEALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLV 359
Query: 358 KAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413
AG + S +AR +++ AI +N + + + + + GKK + +
Sbjct: 360 SAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYL 415
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 300 bits (770), Expect = 3e-82
Identities = 145/420 (34%), Positives = 229/420 (54%), Gaps = 13/420 (3%)
Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64
L LS RG I Q ++ L +G +T Y G+D TA SLHAGHL L+ L Q
Sbjct: 2 SGMILDELSWRGLIAQSTDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQ 61
Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124
+ GH+PI L GG T +IGDP E R + + + E E+I+G F+ + A+
Sbjct: 62 RAGHRPIVLAGGATGMIGDPRDVGE-RSLNEADTVAEWTERIRGQLERFVDFDDSPMGAI 120
Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDF 184
+ NN W S+ I+ LR+IG FSVN ML+ +++R RL E +S+ EF+Y++LQA D+
Sbjct: 121 VENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEG-ISYTEFSYLLLQANDY 179
Query: 185 VELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT-LSG 243
VEL + + C LQ+GG+DQWGNII G+ L + + ALT PL+T A GTK GK+ G
Sbjct: 180 VELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGG 239
Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQG--KEINEAKKI 301
++WL+ +MTSPY ++QY+ N DADV+ + + T L E+ + + + A++
Sbjct: 240 SLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRR 299
Query: 302 IATEITTMVHGREEAEKAATAA--------MECFDMSIHSQHMPTISISKDEVSRGMGLL 353
+A+E+T +VHG A+ + D + + + ++++ + G++
Sbjct: 300 LASELTVLVHGEAATAAVEHASRALFGRGELARLDEATLAAALRETTVAELKPGSPDGIV 359
Query: 354 TLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413
L+V +G + S ARR + + +NN + NE+ + DF + L GK++
Sbjct: 360 DLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFLHGRWLVLRRGKRSIAG 419
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 290 bits (744), Expect = 3e-79
Identities = 110/360 (30%), Positives = 182/360 (50%), Gaps = 33/360 (9%)
Query: 5 KSDFLSILSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWL 63
K + + ERG++ + +E + L + AY+G D TA SLH GHL LM LFW+
Sbjct: 33 KQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWM 92
Query: 64 QKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDA 123
G+K +L+GG T+ IGDP+ R +SR + S + N+ KI + + A
Sbjct: 93 YLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRA 152
Query: 124 L-----------MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFL 172
++NN W +++LR +G + MLS ++V++++ + +SF
Sbjct: 153 RGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFA 212
Query: 173 EFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK--------------- 217
EF Y I+Q +D+ EL ++Q+GGSDQ+GNII G+++ + +
Sbjct: 213 EFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPK 272
Query: 218 --TPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKR 275
+ T PLLT +SG K GK+ AIWL+ TS ++F+ Y+ D +V + K
Sbjct: 273 TALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKL 332
Query: 276 LTTLPMSEIDRMAK--LQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECF--DMSI 331
T +P+SEI + + ++ A+ +A E+ T+VHG++EA A + M+I
Sbjct: 333 FTFMPISEITKTMEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQMTI 392
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4
PDB: 1h3e_A*
Length = 432
Score = 280 bits (717), Expect = 4e-76
Identities = 96/432 (22%), Positives = 171/432 (39%), Gaps = 48/432 (11%)
Query: 12 LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPI 71
L +RG + L L +T +G D T LH GH L + Q+ GHK +
Sbjct: 14 LLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVV 73
Query: 72 SLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETW 131
++G T +IGDPS R ++R + +E +EN + ++ + + N W
Sbjct: 74 LIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFE--LRYNSEW 131
Query: 132 LCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNY 191
L + + +++R + S +V +ML E + R + +S E Y QAYD V +
Sbjct: 132 LEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAI---- 186
Query: 192 DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTA-SGTKMGKTLSGAIWLNKE 250
++MGG+DQ N++ G ++ PLL KM K+L I L +
Sbjct: 187 RADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE- 245
Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMV 310
P ++ + D + S+ + LT L EI+ L A +++A +T
Sbjct: 246 --PPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIE---ALLKAGPVPAHRVLARLLTAAY 300
Query: 311 HGREEAEKAATAAMECFDMSIHSQH----------------------------MPTISIS 342
+ + A E + + +P ++I
Sbjct: 301 ALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIP 360
Query: 343 KDEVSRG-MGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGN 401
E+ G + + L AG S EARR +++ ++++ ++++ LQ+ L
Sbjct: 361 ASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRP----- 415
Query: 402 IKLSFGKKNHII 413
L GK +
Sbjct: 416 RILQRGKDRFVR 427
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str}
PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 273 bits (698), Expect = 7e-74
Identities = 134/318 (42%), Positives = 196/318 (61%), Gaps = 3/318 (0%)
Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64
S+ + L ERG + Q+++ L +QG + G+D TA SLH GHL L+ L Q
Sbjct: 3 SSNLIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQ 62
Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124
+ GHKP++L+GG T +IGDPSF+ R++ + +QE ++KI+ + F+ + G+ A+
Sbjct: 63 QAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAI 122
Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE-QSLSFLEFNYMILQAYD 183
NN W ++ + LR+IG FSVN+M++ E+V+ RL RE Q +SF EF+Y +LQ YD
Sbjct: 123 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 182
Query: 184 FVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243
F L K Y L +GGSDQWGNI GIDL RL ++F LT PL+T A GTK GKT G
Sbjct: 183 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG 242
Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAK--LQGKEINEAKKI 301
A+WL+ + TSPY F+Q+W N DADV F K T + + EI+ + + + A+ +
Sbjct: 243 AVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYV 302
Query: 302 IATEITTMVHGREEAEKA 319
+A ++T +VHG E + A
Sbjct: 303 LAEQVTRLVHGEEGLQAA 320
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP- binding, ligase,
mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo
sapiens}
Length = 356
Score = 263 bits (674), Expect = 4e-71
Identities = 115/342 (33%), Positives = 174/342 (50%), Gaps = 17/342 (4%)
Query: 6 SDFLSILSERGFIHQISNPRE--------LDILCSQGVVTAYIGYDLTASSLHAGHLTQL 57
L+ RG D + T Y G+D TA SLH GHL L
Sbjct: 9 QGLLAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLAL 68
Query: 58 MLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFI--- 114
+ LF LQ+ GH I+L+GG T+ +GDPS R + R + ++ ++ N ++ +
Sbjct: 69 LGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANH 128
Query: 115 ----KYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLS 170
G +L+N W +D L +G F + +LS +SV+ RLK + +S
Sbjct: 129 QQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMS 188
Query: 171 FLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLT 230
EF Y +LQAYDF L + Y CR+Q+GGSDQ GNI+ G + +L +F +T PL+T
Sbjct: 189 LAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLIT 248
Query: 231 TASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL 290
+ +G K+GK+ A+WLN++ TSP+ +Q++ D V + K T LP+ EID + +L
Sbjct: 249 STTGAKLGKSAGNAVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQL 308
Query: 291 QGKEIN--EAKKIIATEITTMVHGREEAEKAATAAMECFDMS 330
KE +K +A E+T +VHGRE + A + S
Sbjct: 309 HVKEPERRGPQKRLAAEVTKLVHGREGLDSAKRCTQALYHRS 350
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Length = 314
Score = 151 bits (383), Expect = 2e-37
Identities = 48/321 (14%), Positives = 108/321 (33%), Gaps = 49/321 (15%)
Query: 12 LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPI 71
+ +R +I + EL + + +AYIG++ + +H GH Q+ + LQ G I
Sbjct: 6 MIKRN-TSEIISEEELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDII 63
Query: 72 SLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETW 131
L+ + + DE R++ + +K + + +
Sbjct: 64 ILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKY---------------VYGSEF 108
Query: 132 LCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNY 191
Y + + ++ R + +R +++ E Y I+Q
Sbjct: 109 QLDKDYTLNVYRLALKTTLKRARRSMELIARE--DENPKVAEVIYPIMQVNTSHY----L 162
Query: 192 DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT-KMGKTLSGAIWLN-- 248
+ +GG +Q + +L K+ + +P+LT G KM + I ++
Sbjct: 163 GVDVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218
Query: 249 -----KEMTSPYNFWQYWRN-----------IDDADVVSFAKRLTTLPMSEIDRM-AKLQ 291
++ Y + K L ++ + + + +
Sbjct: 219 PEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFK 278
Query: 292 GKEIN--EAKKIIATEITTMV 310
KE++ K +A E+ ++
Sbjct: 279 NKELHPMYLKNAVAEELIKIL 299
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognition domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 125 bits (315), Expect = 2e-29
Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 21/248 (8%)
Query: 6 SDFLSI-----LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60
D S L R + ++ +L + + + Y G T H + + +
Sbjct: 2 GDAPSPEEKLHLITRN-LQEVLGEEKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKI 59
Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120
K G + L + + + E +R + I+ + G
Sbjct: 60 ADFLKAGCEVTILFADLHAYLDNMKAPWE-LLELRVSYYENVIKAM------LESIGVPL 112
Query: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180
+ + S +Y + + S + + + K+ + Y LQ
Sbjct: 113 EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVV--KQVEHPLLSGLLYPGLQ 170
Query: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKM-GK 239
A D Q GG DQ L K L +P++ +G+KM
Sbjct: 171 ALDEEY----LKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSS 226
Query: 240 TLSGAIWL 247
I L
Sbjct: 227 EEESKIDL 234
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus
horikoshii OT3}
Length = 375
Score = 115 bits (289), Expect = 1e-26
Identities = 39/261 (14%), Positives = 82/261 (31%), Gaps = 15/261 (5%)
Query: 12 LSERGFIHQISNPRELDILCSQGV-VTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHK 69
L + ++ L L G + YIG++++ +H G L + QK G K
Sbjct: 9 LVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIK 67
Query: 70 PISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNE 129
+ S I D D ++ ++ ++ G +
Sbjct: 68 TRVFLADWHSWINDKLGGDLEV--IQEVALKYFKVGMEKSIEVM---GGDPKKVEFVLAS 122
Query: 130 TWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAK 189
L Y + +I +++R++ ++ R E ++ F + Y ++Q D
Sbjct: 123 EILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGE-AIDFAKLIYPMMQVADI----F 177
Query: 190 NYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTK--MGKTLSGAIWL 247
+ G DQ + I++ ++L+ + L A +G +
Sbjct: 178 YQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPI 237
Query: 248 NKEMTSPYNFWQYWRNIDDAD 268
E Q +
Sbjct: 238 ESEEEFKEIKAQMKMSKSKPY 258
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 105 bits (262), Expect = 2e-23
Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 16/265 (6%)
Query: 18 IHQISNPREL-DILCSQG-VVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMG 75
+ ++ NP+ + D+L Q + Y G T H G+ + L K G + L+
Sbjct: 20 LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEVTVLLA 78
Query: 76 GGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSI 135
+ + + E R++ + I+ I + ++ +
Sbjct: 79 DLHAFLDNMKAPLE-VVNYRAKYYELTIKAI------LRSINVPIEKLKFVVGSSYQLTP 131
Query: 136 KYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRL 195
Y + + + S N + K+ + Y ++QA D D
Sbjct: 132 DYTMDIFRLSNIVSQNDAKRAGADVV--KQVANPLLSGLIYPLMQALDEQF----LDVDC 185
Query: 196 QMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPY 255
Q GG DQ + + L K L +P++ + ++
Sbjct: 186 QFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEEPKQ 245
Query: 256 NFWQYWRNIDDADVVSFAKRLTTLP 280
+ V L+ +
Sbjct: 246 VKKKINSAFCSPGNVEENGLLSFVQ 270
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 95.6 bits (237), Expect = 2e-20
Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 50/321 (15%)
Query: 37 TAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRS 96
Y G ++ S+H GHL M WLQ + P+ +I R +
Sbjct: 80 YLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPL--------VIQMTDDEKFYFRNIPM 131
Query: 97 QEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSF 156
++++ + I G + + + + + + R +
Sbjct: 132 EQVEAMTTENI---KDIIAMGFDPELTFIFRDFDY--------MGCMYRTVAKIERAFTA 180
Query: 157 ESVRSRLKREQSLSFLEFNYMILQAYDFVEL--------AKNYDCRLQMGGSDQWGNIIC 208
VR + + + +QA + L DQ
Sbjct: 181 SQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRL 240
Query: 209 GIDLGERLKTPKLFALTSPLLTTASGTKMGKTLS------------------GAIWLNKE 250
D+ RL K + S SG K + S +
Sbjct: 241 TRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTDTEKMVKDKINKHAFSGG 300
Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEIT 307
+ + N++ + + E+ R+ + I E KK++ IT
Sbjct: 301 GATKQEHFLLGANVEVDVPIQWLS-FFLEDDEELARVKKEYMLGRIMTGEVKKLLINTIT 359
Query: 308 TMVHG-REEAEKAATAAMECF 327
+ +E+ + ++ F
Sbjct: 360 AITKTHQEKRKLVTDEDVQLF 380
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, anticodon recognition domain,
bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens}
SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 92.8 bits (230), Expect = 1e-19
Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 47/312 (15%)
Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98
Y G ++ ++H GHL + WLQ + P+ + D+ + + +
Sbjct: 112 YTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMT-----------DDEKYLWKDLT 160
Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158
+ + I G + ++ ++ + + + ++F
Sbjct: 161 LDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGF-----YKNVVKIQKHVTFNQ 215
Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVELA-------KNYDCRLQMGGSDQWGNIICGID 211
V+ S + ++ +QA + + L DQ D
Sbjct: 216 VKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRD 275
Query: 212 LGERLKTPKLFALTS---PLLTTASGTKMGKTLSGAIWL-----------NKEMTSP--- 254
+ R+ PK L S P L A + +I+L NK S
Sbjct: 276 VAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRD 335
Query: 255 --YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTM 309
Q+ N D DV +++++ + E KK + + +
Sbjct: 336 TIEEHRQFGGNCDV-DVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 394
Query: 310 VHG-REEAEKAA 320
+ + ++
Sbjct: 395 IAEHQARRKEVT 406
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, anticodon recognition domain,
bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens}
SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A*
2quj_A* 2quk_A
Length = 477
Score = 90.1 bits (223), Expect = 9e-19
Identities = 39/315 (12%), Positives = 90/315 (28%), Gaps = 47/315 (14%)
Query: 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMR 95
Y G ++ ++H GHL + WLQ + P+ + + +
Sbjct: 156 FYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW--------KDLT 207
Query: 96 SQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLS 155
+ + + I G + ++ ++ + + + ++
Sbjct: 208 LDQAYGDAVE---NAKDIIACGFDINKTFIFSDLDYMGMSSGF-----YKNVVKIQKHVT 259
Query: 156 FESVRSRLKREQSLSFLEFNYMILQAYD-------FVELAKNYDCRLQMGGSDQWGNIIC 208
F V+ S + ++ +QA + + L DQ
Sbjct: 260 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 319
Query: 209 GIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG---AIWL-----------NKEMTSP 254
D+ R+ PK L S G + + S +I+L NK S
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 255 -----YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEI 306
Q+ N D + +++++ + E KK + +
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFMYLT-FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 438
Query: 307 TTMVHG-REEAEKAA 320
++ + ++
Sbjct: 439 QPLIAEHQARRKEVT 453
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 88.8 bits (219), Expect = 2e-18
Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 19/267 (7%)
Query: 15 RGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLM 74
R + ++ +L S + YIGY+ + H G L + + L + G L
Sbjct: 15 RNTVEIVTEEELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDFSVLE 73
Query: 75 GGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCS 134
+ I D D ++ ++ +E G ++ E
Sbjct: 74 ATWHAYINDKLGGDMDLIRAAARIVRRVME----------AAGVPVERVRFVDAEELASD 123
Query: 135 IKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCR 194
Y L+ + S+ R+ ++ R E + + Y ++Q D D
Sbjct: 124 KDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFY----MDLD 179
Query: 195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT-KMGKTLSGAIWLNKEMT- 252
+ +GG DQ + D+ E+L K A+ +P++++ G +M + + E+
Sbjct: 180 IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKM 239
Query: 253 --SPYNFWQYWRNIDDADVVSFAKRLT 277
S + + DD K
Sbjct: 240 SKSKPETAVFVVDSDDDIRRKIRKAYC 266
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 83.2 bits (205), Expect = 1e-16
Identities = 45/311 (14%), Positives = 93/311 (29%), Gaps = 49/311 (15%)
Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98
Y G ++ SLH GHL + +LQ T P+ + + D DE +
Sbjct: 78 YTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQ------LTD----DEKFIFKSNLT 127
Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158
++E I G + N ++ + + + +S
Sbjct: 128 LEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPD--------ILRIEKKISCSQ 179
Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVEL-------AKNYDCRLQMGGSDQWGNIICGID 211
++S + S + +F + +QA + L DQ D
Sbjct: 180 IKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRD 239
Query: 212 LGERLKTPKLFALTSPLLTTASGTKMGKTLS-------------------GAIWLNKEMT 252
+ RL K ++ S L + G++ + S +
Sbjct: 240 VAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQA 299
Query: 253 SPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTM 309
+ + N+D + + +++ + K E+ E K I+ E+ +
Sbjct: 300 TEEEQRRLGANLDVDVSWQYLR-FLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKL 358
Query: 310 VHG-REEAEKA 319
++ E
Sbjct: 359 TKNHQKNREAI 369
>2j5b_A Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2.2A
{Mimivirus}
Length = 348
Score = 75.0 bits (183), Expect = 3e-14
Identities = 49/323 (15%), Positives = 101/323 (31%), Gaps = 30/323 (9%)
Query: 15 RGFIHQISNPRELDILCSQG-VVTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHKPIS 72
+ L L G + TAY G++ + +H L +M + + G + I
Sbjct: 19 LSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQMII 77
Query: 73 LMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWL 132
+ + + D ++ + E + T + +E
Sbjct: 78 YIADWFAKMNLKMNGDINKIRELGRYFIEVFK--------ACGINLDGT-RFIWASEFIA 128
Query: 133 CSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYD 192
+ YI+ + +I F +++R+ + R L + Y +QA D EL
Sbjct: 129 SNPSYIERMLDIAEFSTISRVKRCCQIMGR-NESDCLKASQIFYPCMQAADVFELVPEGI 187
Query: 193 CRLQMGGSDQWGNIICGIDLGERLKTP--KLFALTSPLLTTASGTKMGKTLSGAIWL--- 247
Q+G + N++ +R L L+ GAI++
Sbjct: 188 DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
Query: 248 --------NKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPM--SEIDRM-AKLQGKEIN 296
++ + F ++ + L ++I+ +
Sbjct: 248 EQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKR 307
Query: 297 EAKKIIATEITTMVHG-REEAEK 318
E K +A I T++ RE +K
Sbjct: 308 ELKTDVANYINTIIDLVREHFKK 330
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 69.7 bits (169), Expect = 1e-12
Identities = 47/336 (13%), Positives = 106/336 (31%), Gaps = 47/336 (13%)
Query: 12 LSERGFIHQISNPREL-DILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKP 70
L R ++ EL ++ ++ AY+GY+ + +H GH+ + L LQ+ G +
Sbjct: 9 LITRN-AEEVVTEEELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI 66
Query: 71 ISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNET 130
I L+ + ++ ++ N + + + L+ +
Sbjct: 67 IVLLADIHAY-----LNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDY 121
Query: 131 WLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKN 190
L +K + S+ +R++ + Y ++QA D
Sbjct: 122 VLDVLKM---------ARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIAH---- 168
Query: 191 YDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWL--- 247
L +GG DQ + + RL L +P+L G KM + I +
Sbjct: 169 LGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYISVRDP 228
Query: 248 --------NKEMTSP----------YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-A 288
K + V AK + + + +
Sbjct: 229 PEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAE 288
Query: 289 KLQGKEIN--EAKKIIATEITTMVHGREEAEKAATA 322
+ +++ + K +A + ++ + ++ +
Sbjct: 289 DFKSGQLHPLDLKIAVAKYLNMLLE--DARKRLGVS 322
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae}
Length = 432
Score = 67.1 bits (163), Expect = 7e-12
Identities = 43/309 (13%), Positives = 89/309 (28%), Gaps = 46/309 (14%)
Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98
Y G ++ S+H GH+ + WLQ+ P+ + DE
Sbjct: 106 YTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTD----------DEKFLFKHKLT 155
Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158
I + + I G + + ++ ++ Y + V+R ++ +
Sbjct: 156 INDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETV-------VRVSRQITGST 208
Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVEL-------AKNYDCRLQMGGSDQWGNIICGID 211
++ S +F++ +Q + L DQ D
Sbjct: 209 AKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRD 268
Query: 212 LGERLKTPKLFALTSPLL---TTASGTKMGKTLSGAIWLN-----------KEMTSP--- 254
+ ++LK K L S ++ + AI++ K S
Sbjct: 269 VADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQV 328
Query: 255 --YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEIN--EAKKIIATEITTMV 310
+ N D + + + K + E+ E KK+ + V
Sbjct: 329 SADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFV 388
Query: 311 HG-REEAEK 318
+E +
Sbjct: 389 KAFQERRAQ 397
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural genomics of pathogenic protozoa,
MSGPP; 3.00A {Entamoeba histolytica}
Length = 386
Score = 61.6 bits (149), Expect = 3e-10
Identities = 32/312 (10%), Positives = 80/312 (25%), Gaps = 47/312 (15%)
Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPIS-LMGGGTSIIGDPSFRDESRRMMRSQ 97
+I + L +LQ + + + ++ + +E+ +M
Sbjct: 86 FIQKYPQ-KEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSN-- 142
Query: 98 EIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFE 157
+ ++ + +G + + + + + L V + ++
Sbjct: 143 ---DLMKY-------ILAFGFNEDKTFIYTDYQYFGKMYRTISL--------VEKATAYN 184
Query: 158 SVRSRLKREQSLSFLEFNYMILQAYD-----FVELAKNYDCRLQMGGSDQWGNIICGIDL 212
V+ E S + + + + + L + +
Sbjct: 185 VVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQI 244
Query: 213 GERLKTPKLFALTSPL--LTTASGTKMGKTLSGAIWL-----------NKEMTSP----- 254
L + L + L + + +I L NK S
Sbjct: 245 ATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTT 304
Query: 255 YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEIN--EAKKIIATEITTMVHG 312
+ D ++ D K E+ E KKI++ + +
Sbjct: 305 EEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVA 364
Query: 313 REEAEKAATAAM 324
+ +K T A
Sbjct: 365 YDAKKKPITTAY 376
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.3 bits (146), Expect = 8e-10
Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 97/250 (38%)
Query: 23 NPREL-DILC-----SQGVVTAYIGYDLTAS----SLHAGHLTQLMLLFWL-----QKTG 67
P EL L SQG+VTA + + S + +LF++ +
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVA---IAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 68 HKPISLMGGGTSIIGD--------P----SFRDESRRMMRSQEIQENIEKI-------KG 108
+ + SI+ D P S + ++ +++Q+ + K K
Sbjct: 316 NTSLP-----PSILEDSLENNEGVPSPMLSISNLTQ-----EQVQDYVNKTNSHLPAGKQ 365
Query: 109 IFSSFIKYG------TGKTDALM-LNNETWLCSIKY---IDLLREIGSFFS------VNR 152
+ S + G +G +L LN L K +D R I FS NR
Sbjct: 366 VEISLVN-GAKNLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSR-IP--FSERKLKFSNR 419
Query: 153 MLS----F-----ESVRSRLKREQSLSFLEFNYMILQAYDF---VELAKNYDCRLQMGGS 200
L F + ++ L N + A D V YD GS
Sbjct: 420 FLPVASPFHSHLLVPASDLINKD-----LVKNNVSFNAKDIQIPV-----YDTF---DGS 466
Query: 201 D---QWGNII 207
D G+I
Sbjct: 467 DLRVLSGSIS 476
Score = 52.3 bits (125), Expect = 2e-07
Identities = 58/421 (13%), Positives = 106/421 (25%), Gaps = 178/421 (42%)
Query: 3 AFKSDFLSILSERG-----FIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQL 57
F++ +L G ++ + ++ ++ ++ Y A + +
Sbjct: 90 EFENCYL-----EGNDIHALAAKLLQENDTTLVKTKELIKNY--I-------TARIMAK- 134
Query: 58 MLLFWLQKTGHKPISLMGGGTSIIGDPS--FRDESRRMMRSQEIQENIEKIKGIFSSFIK 115
+P S FR + E ++ IF
Sbjct: 135 -----------RPFDKKS--------NSALFRA----------VGEGNAQLVAIFG---- 161
Query: 116 YGTGKTDALMLNNETWLCSIKYIDLLREI----GSFFSVNRMLSFESVRSRLKREQSLSF 171
G G N + Y + LR++ V ++ F + L L
Sbjct: 162 -GQG-------NTDD------YFEELRDLYQTYHVL--VGDLIKFSA--ETL---SELIR 200
Query: 172 LE--FNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTS--- 226
+ Q + + +W L TP L S
Sbjct: 201 TTLDAEKVFTQGLNIL----------------EW--------LENPSNTPDKDYLLSIPI 236
Query: 227 --PLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEI 284
PL+ G I L Y VV+ AK L P E+
Sbjct: 237 SCPLI-------------GVIQLA----------HY--------VVT-AKLLGFTP-GEL 263
Query: 285 -DRMAKL----QGKEINEAKKIIATEITTMVHGREEAEKAATAAMEC-FDMSIHSQH-MP 337
+ QG ++ E + A+ F + + P
Sbjct: 264 RSYLKGATGHSQG--------LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 338 TISIS----KDEVSRGMGLLT--LIVKA-------GFATSTNEARRHLKSN---AIKINN 381
S+ +D + G+ + L + + TN HL + I + N
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVN 372
Query: 382 S 382
Sbjct: 373 G 373
Score = 31.8 bits (72), Expect = 0.30
Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 49/196 (25%)
Query: 13 SERGFIH--QISNPR-------ELDILCSQGVVTA---YIGYDLTASSLHAGHLTQLMLL 60
SE+G + Q + P + L S+G++ A + G+ L + A L +M +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-LADVMSI 1779
Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQ--EIQENIEKIKGIFSS----FI 114
L + + G T + P RDE + RS I N ++ FS ++
Sbjct: 1780 ESLVE-----VVFYRGMTMQVAVP--RDE---LGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 115 KYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEF 174
GK WL I ++ E + + + + ++V + L
Sbjct: 1830 VERVGKRTG-------WLVEI--VNYNVENQQYVAAGDLRALDTVTNVL----------- 1869
Query: 175 NYMILQAYDFVELAKN 190
N++ LQ D +EL K+
Sbjct: 1870 NFIKLQKIDIIELQKS 1885
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis,
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 46.7 bits (110), Expect = 1e-05
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 16/148 (10%)
Query: 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMR 95
+ Y G ++ +LH GHL + +LQ + + I D F R +
Sbjct: 92 IYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQ-----ITDDEKFLR--NRSLS 144
Query: 96 SQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLS 155
E+ + I G + N +L + ++++
Sbjct: 145 YAEVDSYTRE---NIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQL-- 199
Query: 156 FESVRSRLKREQSLSFLEFNYMILQAYD 183
R+ + + Q
Sbjct: 200 ----RASFGFSNDANVGYAAFPPKQMLP 223
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 44.9 bits (105), Expect = 4e-05
Identities = 38/307 (12%), Positives = 80/307 (26%), Gaps = 51/307 (16%)
Query: 39 YIGYDLTASSLHAGHLTQLMLLFW-LQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQ 97
Y G + +H GH+ W +K G + + + + +
Sbjct: 77 YTGRGPS-GPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYD 135
Query: 98 EIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFE 157
I + I +FI + T + + + ++F
Sbjct: 136 NILDIIAVGFDPDKTFIFQNSEFTKIYEMAIP--------------------IAKKINFS 175
Query: 158 SVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK 217
++ + + +Q K + DQ D E L
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAI---DQDPYWRLQRDFAESLG 232
Query: 218 TPKLFALTSPLL--TTASGTKMGKTLSG-----------------AIWLNKEMTSPYNFW 258
K AL S + T+ KM + L +
Sbjct: 233 YYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQR 292
Query: 259 QYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTMVHG--- 312
+ + V + + ++ + E+ E K+ + ++I +
Sbjct: 293 EKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQR 352
Query: 313 -REEAEK 318
R++AEK
Sbjct: 353 RRKKAEK 359
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Length = 340
Score = 44.5 bits (104), Expect = 4e-05
Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 18/176 (10%)
Query: 41 GYDLTASSLHAGHLTQLML-LFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEI 99
G T LH GHL + LQ+ G++ + ++ + +
Sbjct: 18 GMRPTGK-LHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLK-------- 68
Query: 100 QENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESV 159
E + + F+ G +++ + L I S + R+ +++ +
Sbjct: 69 ----EYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEI 124
Query: 160 RSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGER 215
+S L + + Y +LQA D + Y G DQ +I ++ R
Sbjct: 125 KSELNYKDLSTAGFLIYPVLQAADIL----IYKAEGVPVGEDQVYHIELTREIARR 176
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid,
aminoacyl-tRNA synthetase, ATP- binding, cytoplasm,
ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Length = 322
Score = 37.7 bits (87), Expect = 0.005
Identities = 31/212 (14%), Positives = 74/212 (34%), Gaps = 31/212 (14%)
Query: 49 LHAGH-LTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIK 107
LH G+ + + Q+ + + ++ +++++N K
Sbjct: 16 LHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQD----------GEKLKQNSLKAA 64
Query: 108 GIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQ 167
++F+ G ++ ++ +L F + + S + ++ +
Sbjct: 65 ---AAFLSLGIDPQKSVFWLQSDVKEVMELYWILS---QFTPMGLLERAHSYKDKVAKGL 118
Query: 168 SLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERL--KTPKLFALT 225
S S F+Y +L A D + +D R+ G DQ ++ D+ ++ + ++F L
Sbjct: 119 SASHGLFSYPVLMAADILL----FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP 174
Query: 226 SPLLTTAS-------GTKMGKTLSGAIWLNKE 250
+ G KM K+ I +
Sbjct: 175 EARVNEEVAVVVGTDGAKMSKSYQNTIDIFSS 206
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein,
E.coli, montreal-kingston bacterial structural genomics
initiative, BSGI; NMR {Escherichia coli K12} SCOP:
d.66.1.6
Length = 79
Score = 36.2 bits (84), Expect = 0.015
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 335 HMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ 394
+M T S+ K L L+ G++ S +A+ + +K++ ++ + ++ +I
Sbjct: 9 NMATFSLGKHPHVE---LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG 65
Query: 395 D 395
Sbjct: 66 Q 66
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog;
S4 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 29.7 bits (67), Expect = 1.3
Identities = 6/46 (13%), Positives = 19/46 (41%)
Query: 352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFD 397
L T+++K A A ++ +++ ++++ + D
Sbjct: 10 LPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMED 55
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP:
d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A*
3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Length = 350
Score = 29.3 bits (65), Expect = 1.7
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 274 KRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSIHS 333
K L+ LP+ E + +G+E+N K + + EEA E D+S+
Sbjct: 37 KGLSALPLEE----RRKRGQELNAIKAALEAALEAREKALEEAALKEALERERVDVSLPG 92
Query: 334 QHMP 337
+
Sbjct: 93 ASLF 96
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A*
Length = 350
Score = 29.1 bits (65), Expect = 2.0
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 317 EKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSN- 375
++ AM + I Q MP +SK ++ +L + +A + +E++ SN
Sbjct: 18 VESMKKAMV--EFEIDLQKMPLGKLSKRQIQSAYSILNEVQQA-VSDGGSESQILDLSNR 74
Query: 376 ---------AIKINNSIISNEKLQIKLQDFDSTGNIKLS 405
+K + + E +Q K+Q D+ +I+++
Sbjct: 75 FYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVA 113
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Length = 213
Score = 28.9 bits (65), Expect = 2.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 360 GFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395
+ EA R L + +K++ + +K + D
Sbjct: 19 KLSDKEREAARILANGLVKVDGKTVREKKFAVGFMD 54
>1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein;
2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/79 (13%), Positives = 19/79 (24%)
Query: 247 LNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEI 306
+NKEM + + + + L E D KL + E+
Sbjct: 14 INKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEV 73
Query: 307 TTMVHGREEAEKAATAAME 325
+ E
Sbjct: 74 KQPEQNFKSLLDVFEKTYE 92
>1pg6_A Hypothetical protein SPYM3_0169; structural genomics, PSI, protein
structure initiative; 1.70A {Streptococcus pyogenes
MGAS8232} SCOP: b.82.5.2
Length = 243
Score = 28.3 bits (63), Expect = 3.8
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 30 LCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI----IGDPS 85
L G Y + ++ LF + G + G+ G
Sbjct: 121 LALDGSAQ----YKMERQNIGKALFGGQGGLFVMTTEGLGTLLANSFGSIKKITLDGGTM 176
Query: 86 FRDESRRMMRSQEIQENIEKIKGIFSSF 113
D + + S+E+ +I G S
Sbjct: 177 TIDNAHVVAWSRELDYDIHLENGFMQSI 204
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 28.0 bits (61), Expect = 4.6
Identities = 21/185 (11%), Positives = 41/185 (22%), Gaps = 1/185 (0%)
Query: 183 DFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLS 242
+AK YD + M + N K + +T A M
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 243 GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKII 302
+ + + + + V T + G +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 303 ATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTIS-ISKDEVSRGMGLLTLIVKAGF 361
A I + + + E+ + + + I D+ L AG
Sbjct: 328 AYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGI 387
Query: 362 ATSTN 366
Sbjct: 388 RAVEI 392
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 27.5 bits (60), Expect = 5.4
Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 15/196 (7%)
Query: 120 KTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMIL 179
+TD +E + + ++ + S + + +++
Sbjct: 29 ETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPPIMFALERMCEKYFKIKPLVV 88
Query: 180 QAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGK 239
L Y+ ++G D+ N + GI +P + T +
Sbjct: 89 GPGIKTGLNIKYENPREVGA-DRIVNAVAGIH---LYGSPLIIVDFGTATTYCYINEEKH 144
Query: 240 TLSGAIWLN----------KEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPM-SEIDRMA 288
+ G I + P ++ + VS + +++ +
Sbjct: 145 YMGGVITPGIMISAEALYSRAAKLPRIEITKPSSVVGKNTVSAMQSGILYGYVGQVEGIV 204
Query: 289 KLQGKEINEAKKIIAT 304
K +E + K+IAT
Sbjct: 205 KRMKEEAKQEPKVIAT 220
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 27.4 bits (60), Expect = 5.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 392 KLQDFDSTGNIKLSFGKKNH 411
+L+D+D G + F ++
Sbjct: 318 ELRDYDVGGGFTVDFTDRSR 337
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 27.3 bits (60), Expect = 6.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 162 RLKREQSLSFLEFN----YMILQAYDFVELAKNYDCRL 195
L+ ++++FN M L D + L YD RL
Sbjct: 191 GLRGSTYDAWVKFNRFRREMTLTVLDLIVLFPFYDIRL 228
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, structural genomics,
structural genomics consortium, SGC; HET: 78P; 1.95A
{Homo sapiens} PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 27.2 bits (60), Expect = 7.4
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 328 DMSIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSN---------AIK 378
+M +++ P ++ ++ G L I A A + ++
Sbjct: 46 EMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLR 105
Query: 379 INNSIISNEKLQIKLQDFDSTGNIKLS 405
I + ++L K+Q ++ G+I+++
Sbjct: 106 TPPLIRTQKELSEKIQLLEALGDIEIA 132
>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 52
Score = 27.0 bits (60), Expect = 8.6
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 405 SFGK---KNHIICHLCG 418
SFGK K+H +C+ CG
Sbjct: 6 SFGKRHNKSHTLCNRCG 22
>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori
26695} SCOP: c.37.1.20
Length = 376
Score = 26.7 bits (58), Expect = 9.5
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 3/122 (2%)
Query: 272 FAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI 331
A+ L I E + + +T ++ + + A + D
Sbjct: 88 MAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEID 147
Query: 332 HSQHMPTISISKDEVSRGM---GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEK 388
+ +VS LL ++ + R+H + N I+I+ S I
Sbjct: 148 KISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFIC 207
Query: 389 LQ 390
Sbjct: 208 AG 209
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,501,828
Number of extensions: 160467
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 58
Length of query: 418
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 323
Effective length of database: 3,390,050
Effective search space: 1094986150
Effective search space used: 1094986150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)