RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Length = 420 Score = 387 bits (994), Expect = e-108 Identities = 145/418 (34%), Positives = 223/418 (53%), Gaps = 12/418 (2%) Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64 + + L RG I+Q ++ + ++ L ++ VT Y G D TA SLH GHL + L Q Sbjct: 2 TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQ 61 Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124 + GH+PI L+GGGT +IGDPS + E R + +++ +NIE I + ++GT A+ Sbjct: 62 EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHG-AV 120 Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDF 184 ++NN WL I I LR+ G VN ML +S++SRL+ +S+ EF Y ILQA DF Sbjct: 121 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE--HGISYTEFTYTILQAIDF 178 Query: 185 VELAKNYDCRLQMGGSDQWGNIICGIDL-GERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 L + +C++Q+GGSDQWGNI GI+L + LT PL+T + G K GK+ SG Sbjct: 179 GHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238 Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMA--KLQGKEINEAKKI 301 A+WL+ E TSPY F+Q+W N D DV+ F K T L EIDR+ K + + EA+K Sbjct: 239 AVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKT 298 Query: 302 IATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEV------SRGMGLLTL 355 +A E+T +HG + A + F + S + +V + ++ + Sbjct: 299 LAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEV 358 Query: 356 IVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413 +++ G + S +AR + + AI IN + + +D + GKK + + Sbjct: 359 LIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFM 416 >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Length = 419 Score = 320 bits (820), Expect = 5e-88 Identities = 152/416 (36%), Positives = 230/416 (55%), Gaps = 11/416 (2%) Query: 7 DFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT 66 D L+ L RG ++Q ++ L L ++ VT Y G+D TA SLH GHL ++ + Q+ Sbjct: 2 DLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61 Query: 67 GHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALML 126 GH+PI+L+GG T +IGDPS + R + + ++ +IK F+ + A + Sbjct: 62 GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIK 121 Query: 127 NNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVE 186 NN W+ + I LR++G FSVN M++ ESV+SR++ +SF EF+YM+LQAYDF+ Sbjct: 122 NNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIE--TGISFTEFSYMMLQAYDFLR 179 Query: 187 LAKNYDCRLQMGGSDQWGNIICGIDLGERLK-TPKLFALTSPLLTTASGTKMGKTLSGAI 245 L + CRLQ+GGSDQWGNI G++L + K + F LT PL+T A GTK GKT SG I Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTI 239 Query: 246 WLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAK--LQGKEINEAKKIIA 303 WL+KE TSPY F+Q+W N DD DV+ + K T L EI+ + + + E A+K +A Sbjct: 240 WLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLA 299 Query: 304 TEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEV------SRGMGLLTLIV 357 E+T +VHG E +A + F I + I +V + L+ L+V Sbjct: 300 EEVTKLVHGEEALRQAIRISEALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLV 359 Query: 358 KAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413 AG + S +AR +++ AI +N + + + + + GKK + + Sbjct: 360 SAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYL 415 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Length = 432 Score = 300 bits (770), Expect = 3e-82 Identities = 145/420 (34%), Positives = 229/420 (54%), Gaps = 13/420 (3%) Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64 L LS RG I Q ++ L +G +T Y G+D TA SLHAGHL L+ L Q Sbjct: 2 SGMILDELSWRGLIAQSTDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQ 61 Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124 + GH+PI L GG T +IGDP E R + + + E E+I+G F+ + A+ Sbjct: 62 RAGHRPIVLAGGATGMIGDPRDVGE-RSLNEADTVAEWTERIRGQLERFVDFDDSPMGAI 120 Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDF 184 + NN W S+ I+ LR+IG FSVN ML+ +++R RL E +S+ EF+Y++LQA D+ Sbjct: 121 VENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEG-ISYTEFSYLLLQANDY 179 Query: 185 VELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT-LSG 243 VEL + + C LQ+GG+DQWGNII G+ L + + ALT PL+T A GTK GK+ G Sbjct: 180 VELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGG 239 Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQG--KEINEAKKI 301 ++WL+ +MTSPY ++QY+ N DADV+ + + T L E+ + + + A++ Sbjct: 240 SLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRR 299 Query: 302 IATEITTMVHGREEAEKAATAA--------MECFDMSIHSQHMPTISISKDEVSRGMGLL 353 +A+E+T +VHG A+ + D + + + ++++ + G++ Sbjct: 300 LASELTVLVHGEAATAAVEHASRALFGRGELARLDEATLAAALRETTVAELKPGSPDGIV 359 Query: 354 TLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413 L+V +G + S ARR + + +NN + NE+ + DF + L GK++ Sbjct: 360 DLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFLHGRWLVLRRGKRSIAG 419 >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Length = 392 Score = 290 bits (744), Expect = 3e-79 Identities = 110/360 (30%), Positives = 182/360 (50%), Gaps = 33/360 (9%) Query: 5 KSDFLSILSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWL 63 K + + ERG++ + +E + L + AY+G D TA SLH GHL LM LFW+ Sbjct: 33 KQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWM 92 Query: 64 QKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDA 123 G+K +L+GG T+ IGDP+ R +SR + S + N+ KI + + A Sbjct: 93 YLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRA 152 Query: 124 L-----------MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFL 172 ++NN W +++LR +G + MLS ++V++++ + +SF Sbjct: 153 RGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFA 212 Query: 173 EFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK--------------- 217 EF Y I+Q +D+ EL ++Q+GGSDQ+GNII G+++ + + Sbjct: 213 EFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPK 272 Query: 218 --TPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKR 275 + T PLLT +SG K GK+ AIWL+ TS ++F+ Y+ D +V + K Sbjct: 273 TALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKL 332 Query: 276 LTTLPMSEIDRMAK--LQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECF--DMSI 331 T +P+SEI + + ++ A+ +A E+ T+VHG++EA A + M+I Sbjct: 333 FTFMPISEITKTMEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQMTI 392 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Length = 432 Score = 280 bits (717), Expect = 4e-76 Identities = 96/432 (22%), Positives = 171/432 (39%), Gaps = 48/432 (11%) Query: 12 LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPI 71 L +RG + L L +T +G D T LH GH L + Q+ GHK + Sbjct: 14 LLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVV 73 Query: 72 SLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETW 131 ++G T +IGDPS R ++R + +E +EN + ++ + + N W Sbjct: 74 LIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFE--LRYNSEW 131 Query: 132 LCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNY 191 L + + +++R + S +V +ML E + R + +S E Y QAYD V + Sbjct: 132 LEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAI---- 186 Query: 192 DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTA-SGTKMGKTLSGAIWLNKE 250 ++MGG+DQ N++ G ++ PLL KM K+L I L + Sbjct: 187 RADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE- 245 Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMV 310 P ++ + D + S+ + LT L EI+ L A +++A +T Sbjct: 246 --PPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIE---ALLKAGPVPAHRVLARLLTAAY 300 Query: 311 HGREEAEKAATAAMECFDMSIHSQH----------------------------MPTISIS 342 + + A E + + +P ++I Sbjct: 301 ALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIP 360 Query: 343 KDEVSRG-MGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGN 401 E+ G + + L AG S EARR +++ ++++ ++++ LQ+ L Sbjct: 361 ASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRP----- 415 Query: 402 IKLSFGKKNHII 413 L GK + Sbjct: 416 RILQRGKDRFVR 427 >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Length = 322 Score = 273 bits (698), Expect = 7e-74 Identities = 134/318 (42%), Positives = 196/318 (61%), Gaps = 3/318 (0%) Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64 S+ + L ERG + Q+++ L +QG + G+D TA SLH GHL L+ L Q Sbjct: 3 SSNLIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQ 62 Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124 + GHKP++L+GG T +IGDPSF+ R++ + +QE ++KI+ + F+ + G+ A+ Sbjct: 63 QAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAI 122 Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKRE-QSLSFLEFNYMILQAYD 183 NN W ++ + LR+IG FSVN+M++ E+V+ RL RE Q +SF EF+Y +LQ YD Sbjct: 123 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 182 Query: 184 FVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 F L K Y L +GGSDQWGNI GIDL RL ++F LT PL+T A GTK GKT G Sbjct: 183 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG 242 Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAK--LQGKEINEAKKI 301 A+WL+ + TSPY F+Q+W N DADV F K T + + EI+ + + + A+ + Sbjct: 243 AVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYV 302 Query: 302 IATEITTMVHGREEAEKA 319 +A ++T +VHG E + A Sbjct: 303 LAEQVTRLVHGEEGLQAA 320 >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} Length = 356 Score = 263 bits (674), Expect = 4e-71 Identities = 115/342 (33%), Positives = 174/342 (50%), Gaps = 17/342 (4%) Query: 6 SDFLSILSERGFIHQISNPRE--------LDILCSQGVVTAYIGYDLTASSLHAGHLTQL 57 L+ RG D + T Y G+D TA SLH GHL L Sbjct: 9 QGLLAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLAL 68 Query: 58 MLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFI--- 114 + LF LQ+ GH I+L+GG T+ +GDPS R + R + ++ ++ N ++ + Sbjct: 69 LGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANH 128 Query: 115 ----KYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLS 170 G +L+N W +D L +G F + +LS +SV+ RLK + +S Sbjct: 129 QQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMS 188 Query: 171 FLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLT 230 EF Y +LQAYDF L + Y CR+Q+GGSDQ GNI+ G + +L +F +T PL+T Sbjct: 189 LAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLIT 248 Query: 231 TASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKL 290 + +G K+GK+ A+WLN++ TSP+ +Q++ D V + K T LP+ EID + +L Sbjct: 249 STTGAKLGKSAGNAVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQL 308 Query: 291 QGKEIN--EAKKIIATEITTMVHGREEAEKAATAAMECFDMS 330 KE +K +A E+T +VHGRE + A + S Sbjct: 309 HVKEPERRGPQKRLAAEVTKLVHGREGLDSAKRCTQALYHRS 350 >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A* Length = 314 Score = 151 bits (383), Expect = 2e-37 Identities = 48/321 (14%), Positives = 108/321 (33%), Gaps = 49/321 (15%) Query: 12 LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPI 71 + +R +I + EL + + +AYIG++ + +H GH Q+ + LQ G I Sbjct: 6 MIKRN-TSEIISEEELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDII 63 Query: 72 SLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETW 131 L+ + + DE R++ + +K + + + Sbjct: 64 ILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKY---------------VYGSEF 108 Query: 132 LCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNY 191 Y + + ++ R + +R +++ E Y I+Q Sbjct: 109 QLDKDYTLNVYRLALKTTLKRARRSMELIARE--DENPKVAEVIYPIMQVNTSHY----L 162 Query: 192 DCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT-KMGKTLSGAIWLN-- 248 + +GG +Q + +L K+ + +P+LT G KM + I ++ Sbjct: 163 GVDVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 Query: 249 -----KEMTSPYNFWQYWRN-----------IDDADVVSFAKRLTTLPMSEIDRM-AKLQ 291 ++ Y + K L ++ + + + + Sbjct: 219 PEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFK 278 Query: 292 GKEIN--EAKKIIATEITTMV 310 KE++ K +A E+ ++ Sbjct: 279 NKELHPMYLKNAVAEELIKIL 299 >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Score = 125 bits (315), Expect = 2e-29 Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 21/248 (8%) Query: 6 SDFLSI-----LSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60 D S L R + ++ +L + + + Y G T H + + + Sbjct: 2 GDAPSPEEKLHLITRN-LQEVLGEEKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKI 59 Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120 K G + L + + + E +R + I+ + G Sbjct: 60 ADFLKAGCEVTILFADLHAYLDNMKAPWE-LLELRVSYYENVIKAM------LESIGVPL 112 Query: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180 + + S +Y + + S + + + K+ + Y LQ Sbjct: 113 EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVV--KQVEHPLLSGLLYPGLQ 170 Query: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKM-GK 239 A D Q GG DQ L K L +P++ +G+KM Sbjct: 171 ALDEEY----LKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSS 226 Query: 240 TLSGAIWL 247 I L Sbjct: 227 EEESKIDL 234 >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3} Length = 375 Score = 115 bits (289), Expect = 1e-26 Identities = 39/261 (14%), Positives = 82/261 (31%), Gaps = 15/261 (5%) Query: 12 LSERGFIHQISNPRELDILCSQGV-VTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHK 69 L + ++ L L G + YIG++++ +H G L + QK G K Sbjct: 9 LVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIK 67 Query: 70 PISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNE 129 + S I D D ++ ++ ++ G + Sbjct: 68 TRVFLADWHSWINDKLGGDLEV--IQEVALKYFKVGMEKSIEVM---GGDPKKVEFVLAS 122 Query: 130 TWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAK 189 L Y + +I +++R++ ++ R E ++ F + Y ++Q D Sbjct: 123 EILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGE-AIDFAKLIYPMMQVADI----F 177 Query: 190 NYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTK--MGKTLSGAIWL 247 + G DQ + I++ ++L+ + L A +G + Sbjct: 178 YQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPI 237 Query: 248 NKEMTSPYNFWQYWRNIDDAD 268 E Q + Sbjct: 238 ESEEEFKEIKAQMKMSKSKPY 258 >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Score = 105 bits (262), Expect = 2e-23 Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 16/265 (6%) Query: 18 IHQISNPREL-DILCSQG-VVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMG 75 + ++ NP+ + D+L Q + Y G T H G+ + L K G + L+ Sbjct: 20 LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEVTVLLA 78 Query: 76 GGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSI 135 + + + E R++ + I+ I + ++ + Sbjct: 79 DLHAFLDNMKAPLE-VVNYRAKYYELTIKAI------LRSINVPIEKLKFVVGSSYQLTP 131 Query: 136 KYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRL 195 Y + + + S N + K+ + Y ++QA D D Sbjct: 132 DYTMDIFRLSNIVSQNDAKRAGADVV--KQVANPLLSGLIYPLMQALDEQF----LDVDC 185 Query: 196 QMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPY 255 Q GG DQ + + L K L +P++ + ++ Sbjct: 186 QFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEEPKQ 245 Query: 256 NFWQYWRNIDDADVVSFAKRLTTLP 280 + V L+ + Sbjct: 246 VKKKINSAFCSPGNVEENGLLSFVQ 270 >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Score = 95.6 bits (237), Expect = 2e-20 Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 50/321 (15%) Query: 37 TAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRS 96 Y G ++ S+H GHL M WLQ + P+ +I R + Sbjct: 80 YLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPL--------VIQMTDDEKFYFRNIPM 131 Query: 97 QEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSF 156 ++++ + I G + + + + + + R + Sbjct: 132 EQVEAMTTENI---KDIIAMGFDPELTFIFRDFDY--------MGCMYRTVAKIERAFTA 180 Query: 157 ESVRSRLKREQSLSFLEFNYMILQAYDFVEL--------AKNYDCRLQMGGSDQWGNIIC 208 VR + + + +QA + L DQ Sbjct: 181 SQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRL 240 Query: 209 GIDLGERLKTPKLFALTSPLLTTASGTKMGKTLS------------------GAIWLNKE 250 D+ RL K + S SG K + S + Sbjct: 241 TRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTDTEKMVKDKINKHAFSGG 300 Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEIT 307 + + N++ + + E+ R+ + I E KK++ IT Sbjct: 301 GATKQEHFLLGANVEVDVPIQWLS-FFLEDDEELARVKKEYMLGRIMTGEVKKLLINTIT 359 Query: 308 TMVHG-REEAEKAATAAMECF 327 + +E+ + ++ F Sbjct: 360 AITKTHQEKRKLVTDEDVQLF 380 >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Score = 92.8 bits (230), Expect = 1e-19 Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 47/312 (15%) Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98 Y G ++ ++H GHL + WLQ + P+ + D+ + + + Sbjct: 112 YTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMT-----------DDEKYLWKDLT 160 Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158 + + I G + ++ ++ + + + ++F Sbjct: 161 LDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGF-----YKNVVKIQKHVTFNQ 215 Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVELA-------KNYDCRLQMGGSDQWGNIICGID 211 V+ S + ++ +QA + + L DQ D Sbjct: 216 VKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRD 275 Query: 212 LGERLKTPKLFALTS---PLLTTASGTKMGKTLSGAIWL-----------NKEMTSP--- 254 + R+ PK L S P L A + +I+L NK S Sbjct: 276 VAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRD 335 Query: 255 --YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTM 309 Q+ N D DV +++++ + E KK + + + Sbjct: 336 TIEEHRQFGGNCDV-DVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 394 Query: 310 VHG-REEAEKAA 320 + + ++ Sbjct: 395 IAEHQARRKEVT 406 >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Score = 90.1 bits (223), Expect = 9e-19 Identities = 39/315 (12%), Positives = 90/315 (28%), Gaps = 47/315 (14%) Query: 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMR 95 Y G ++ ++H GHL + WLQ + P+ + + + Sbjct: 156 FYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW--------KDLT 207 Query: 96 SQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLS 155 + + + I G + ++ ++ + + + ++ Sbjct: 208 LDQAYGDAVE---NAKDIIACGFDINKTFIFSDLDYMGMSSGF-----YKNVVKIQKHVT 259 Query: 156 FESVRSRLKREQSLSFLEFNYMILQAYD-------FVELAKNYDCRLQMGGSDQWGNIIC 208 F V+ S + ++ +QA + + L DQ Sbjct: 260 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 319 Query: 209 GIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSG---AIWL-----------NKEMTSP 254 D+ R+ PK L S G + + S +I+L NK S Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379 Query: 255 -----YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEI 306 Q+ N D + +++++ + E KK + + Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFMYLT-FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 438 Query: 307 TTMVHG-REEAEKAA 320 ++ + ++ Sbjct: 439 QPLIAEHQARRKEVT 453 >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Score = 88.8 bits (219), Expect = 2e-18 Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 19/267 (7%) Query: 15 RGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLM 74 R + ++ +L S + YIGY+ + H G L + + L + G L Sbjct: 15 RNTVEIVTEEELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDFSVLE 73 Query: 75 GGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCS 134 + I D D ++ ++ +E G ++ E Sbjct: 74 ATWHAYINDKLGGDMDLIRAAARIVRRVME----------AAGVPVERVRFVDAEELASD 123 Query: 135 IKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCR 194 Y L+ + S+ R+ ++ R E + + Y ++Q D D Sbjct: 124 KDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFY----MDLD 179 Query: 195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT-KMGKTLSGAIWLNKEMT- 252 + +GG DQ + D+ E+L K A+ +P++++ G +M + + E+ Sbjct: 180 IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKM 239 Query: 253 --SPYNFWQYWRNIDDADVVSFAKRLT 277 S + + DD K Sbjct: 240 SKSKPETAVFVVDSDDDIRRKIRKAYC 266 >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Score = 83.2 bits (205), Expect = 1e-16 Identities = 45/311 (14%), Positives = 93/311 (29%), Gaps = 49/311 (15%) Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98 Y G ++ SLH GHL + +LQ T P+ + + D DE + Sbjct: 78 YTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQ------LTD----DEKFIFKSNLT 127 Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158 ++E I G + N ++ + + + +S Sbjct: 128 LEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPD--------ILRIEKKISCSQ 179 Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVEL-------AKNYDCRLQMGGSDQWGNIICGID 211 ++S + S + +F + +QA + L DQ D Sbjct: 180 IKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRD 239 Query: 212 LGERLKTPKLFALTSPLLTTASGTKMGKTLS-------------------GAIWLNKEMT 252 + RL K ++ S L + G++ + S + Sbjct: 240 VAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQA 299 Query: 253 SPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTM 309 + + N+D + + +++ + K E+ E K I+ E+ + Sbjct: 300 TEEEQRRLGANLDVDVSWQYLR-FLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKL 358 Query: 310 VHG-REEAEKA 319 ++ E Sbjct: 359 TKNHQKNREAI 369 >2j5b_A Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2.2A {Mimivirus} Length = 348 Score = 75.0 bits (183), Expect = 3e-14 Identities = 49/323 (15%), Positives = 101/323 (31%), Gaps = 30/323 (9%) Query: 15 RGFIHQISNPRELDILCSQG-VVTAYIGYDLTASSLHAGH-LTQLMLLFWLQKTGHKPIS 72 + L L G + TAY G++ + +H L +M + + G + I Sbjct: 19 LSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQMII 77 Query: 73 LMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWL 132 + + + D ++ + E + T + +E Sbjct: 78 YIADWFAKMNLKMNGDINKIRELGRYFIEVFK--------ACGINLDGT-RFIWASEFIA 128 Query: 133 CSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYD 192 + YI+ + +I F +++R+ + R L + Y +QA D EL Sbjct: 129 SNPSYIERMLDIAEFSTISRVKRCCQIMGR-NESDCLKASQIFYPCMQAADVFELVPEGI 187 Query: 193 CRLQMGGSDQWGNIICGIDLGERLKTP--KLFALTSPLLTTASGTKMGKTLSGAIWL--- 247 Q+G + N++ +R L L+ GAI++ Sbjct: 188 DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247 Query: 248 --------NKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPM--SEIDRM-AKLQGKEIN 296 ++ + F ++ + L ++I+ + Sbjct: 248 EQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKR 307 Query: 297 EAKKIIATEITTMVHG-REEAEK 318 E K +A I T++ RE +K Sbjct: 308 ELKTDVANYINTIIDLVREHFKK 330 >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Score = 69.7 bits (169), Expect = 1e-12 Identities = 47/336 (13%), Positives = 106/336 (31%), Gaps = 47/336 (13%) Query: 12 LSERGFIHQISNPREL-DILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKP 70 L R ++ EL ++ ++ AY+GY+ + +H GH+ + L LQ+ G + Sbjct: 9 LITRN-AEEVVTEEELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI 66 Query: 71 ISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNET 130 I L+ + ++ ++ N + + + L+ + Sbjct: 67 IVLLADIHAY-----LNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDY 121 Query: 131 WLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKN 190 L +K + S+ +R++ + Y ++QA D Sbjct: 122 VLDVLKM---------ARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIAH---- 168 Query: 191 YDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWL--- 247 L +GG DQ + + RL L +P+L G KM + I + Sbjct: 169 LGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYISVRDP 228 Query: 248 --------NKEMTSP----------YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRM-A 288 K + V AK + + + + Sbjct: 229 PEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAE 288 Query: 289 KLQGKEIN--EAKKIIATEITTMVHGREEAEKAATA 322 + +++ + K +A + ++ + ++ + Sbjct: 289 DFKSGQLHPLDLKIAVAKYLNMLLE--DARKRLGVS 322 >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} Length = 432 Score = 67.1 bits (163), Expect = 7e-12 Identities = 43/309 (13%), Positives = 89/309 (28%), Gaps = 46/309 (14%) Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQE 98 Y G ++ S+H GH+ + WLQ+ P+ + DE Sbjct: 106 YTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTD----------DEKFLFKHKLT 155 Query: 99 IQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFES 158 I + + I G + + ++ ++ Y + V+R ++ + Sbjct: 156 INDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETV-------VRVSRQITGST 208 Query: 159 VRSRLKREQSLSFLEFNYMILQAYDFVEL-------AKNYDCRLQMGGSDQWGNIICGID 211 ++ S +F++ +Q + L DQ D Sbjct: 209 AKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRD 268 Query: 212 LGERLKTPKLFALTSPLL---TTASGTKMGKTLSGAIWLN-----------KEMTSP--- 254 + ++LK K L S ++ + AI++ K S Sbjct: 269 VADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQV 328 Query: 255 --YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEIN--EAKKIIATEITTMV 310 + N D + + + K + E+ E KK+ + V Sbjct: 329 SADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFV 388 Query: 311 HG-REEAEK 318 +E + Sbjct: 389 KAFQERRAQ 397 >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica} Length = 386 Score = 61.6 bits (149), Expect = 3e-10 Identities = 32/312 (10%), Positives = 80/312 (25%), Gaps = 47/312 (15%) Query: 39 YIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPIS-LMGGGTSIIGDPSFRDESRRMMRSQ 97 +I + L +LQ + + + ++ + +E+ +M Sbjct: 86 FIQKYPQ-KEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSN-- 142 Query: 98 EIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFE 157 + ++ + +G + + + + + L V + ++ Sbjct: 143 ---DLMKY-------ILAFGFNEDKTFIYTDYQYFGKMYRTISL--------VEKATAYN 184 Query: 158 SVRSRLKREQSLSFLEFNYMILQAYD-----FVELAKNYDCRLQMGGSDQWGNIICGIDL 212 V+ E S + + + + + L + + Sbjct: 185 VVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQI 244 Query: 213 GERLKTPKLFALTSPL--LTTASGTKMGKTLSGAIWL-----------NKEMTSP----- 254 L + L + L + + +I L NK S Sbjct: 245 ATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTT 304 Query: 255 YNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEIN--EAKKIIATEITTMVHG 312 + D ++ D K E+ E KKI++ + + Sbjct: 305 EEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVA 364 Query: 313 REEAEKAATAAM 324 + +K T A Sbjct: 365 YDAKKKPITTAY 376 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 60.3 bits (146), Expect = 8e-10 Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 97/250 (38%) Query: 23 NPREL-DILC-----SQGVVTAYIGYDLTAS----SLHAGHLTQLMLLFWL-----QKTG 67 P EL L SQG+VTA + + S + +LF++ + Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVA---IAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315 Query: 68 HKPISLMGGGTSIIGD--------P----SFRDESRRMMRSQEIQENIEKI-------KG 108 + + SI+ D P S + ++ +++Q+ + K K Sbjct: 316 NTSLP-----PSILEDSLENNEGVPSPMLSISNLTQ-----EQVQDYVNKTNSHLPAGKQ 365 Query: 109 IFSSFIKYG------TGKTDALM-LNNETWLCSIKY---IDLLREIGSFFS------VNR 152 + S + G +G +L LN L K +D R I FS NR Sbjct: 366 VEISLVN-GAKNLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSR-IP--FSERKLKFSNR 419 Query: 153 MLS----F-----ESVRSRLKREQSLSFLEFNYMILQAYDF---VELAKNYDCRLQMGGS 200 L F + ++ L N + A D V YD GS Sbjct: 420 FLPVASPFHSHLLVPASDLINKD-----LVKNNVSFNAKDIQIPV-----YDTF---DGS 466 Query: 201 D---QWGNII 207 D G+I Sbjct: 467 DLRVLSGSIS 476 Score = 52.3 bits (125), Expect = 2e-07 Identities = 58/421 (13%), Positives = 106/421 (25%), Gaps = 178/421 (42%) Query: 3 AFKSDFLSILSERG-----FIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQL 57 F++ +L G ++ + ++ ++ ++ Y A + + Sbjct: 90 EFENCYL-----EGNDIHALAAKLLQENDTTLVKTKELIKNY--I-------TARIMAK- 134 Query: 58 MLLFWLQKTGHKPISLMGGGTSIIGDPS--FRDESRRMMRSQEIQENIEKIKGIFSSFIK 115 +P S FR + E ++ IF Sbjct: 135 -----------RPFDKKS--------NSALFRA----------VGEGNAQLVAIFG---- 161 Query: 116 YGTGKTDALMLNNETWLCSIKYIDLLREI----GSFFSVNRMLSFESVRSRLKREQSLSF 171 G G N + Y + LR++ V ++ F + L L Sbjct: 162 -GQG-------NTDD------YFEELRDLYQTYHVL--VGDLIKFSA--ETL---SELIR 200 Query: 172 LE--FNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTS--- 226 + Q + + +W L TP L S Sbjct: 201 TTLDAEKVFTQGLNIL----------------EW--------LENPSNTPDKDYLLSIPI 236 Query: 227 --PLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEI 284 PL+ G I L Y VV+ AK L P E+ Sbjct: 237 SCPLI-------------GVIQLA----------HY--------VVT-AKLLGFTP-GEL 263 Query: 285 -DRMAKL----QGKEINEAKKIIATEITTMVHGREEAEKAATAAMEC-FDMSIHSQH-MP 337 + QG ++ E + A+ F + + P Sbjct: 264 RSYLKGATGHSQG--------LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315 Query: 338 TISIS----KDEVSRGMGLLT--LIVKA-------GFATSTNEARRHLKSN---AIKINN 381 S+ +D + G+ + L + + TN HL + I + N Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVN 372 Query: 382 S 382 Sbjct: 373 G 373 Score = 31.8 bits (72), Expect = 0.30 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 49/196 (25%) Query: 13 SERGFIH--QISNPR-------ELDILCSQGVVTA---YIGYDLTASSLHAGHLTQLMLL 60 SE+G + Q + P + L S+G++ A + G+ L + A L +M + Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-LADVMSI 1779 Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQ--EIQENIEKIKGIFSS----FI 114 L + + G T + P RDE + RS I N ++ FS ++ Sbjct: 1780 ESLVE-----VVFYRGMTMQVAVP--RDE---LGRSNYGMIAINPGRVAASFSQEALQYV 1829 Query: 115 KYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEF 174 GK WL I ++ E + + + + ++V + L Sbjct: 1830 VERVGKRTG-------WLVEI--VNYNVENQQYVAAGDLRALDTVTNVL----------- 1869 Query: 175 NYMILQAYDFVELAKN 190 N++ LQ D +EL K+ Sbjct: 1870 NFIKLQKIDIIELQKS 1885 >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Score = 46.7 bits (110), Expect = 1e-05 Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 16/148 (10%) Query: 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMR 95 + Y G ++ +LH GHL + +LQ + + I D F R + Sbjct: 92 IYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQ-----ITDDEKFLR--NRSLS 144 Query: 96 SQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLS 155 E+ + I G + N +L + ++++ Sbjct: 145 YAEVDSYTRE---NIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQL-- 199 Query: 156 FESVRSRLKREQSLSFLEFNYMILQAYD 183 R+ + + Q Sbjct: 200 ----RASFGFSNDANVGYAAFPPKQMLP 223 >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Score = 44.9 bits (105), Expect = 4e-05 Identities = 38/307 (12%), Positives = 80/307 (26%), Gaps = 51/307 (16%) Query: 39 YIGYDLTASSLHAGHLTQLMLLFW-LQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQ 97 Y G + +H GH+ W +K G + + + + + Sbjct: 77 YTGRGPS-GPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYD 135 Query: 98 EIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFE 157 I + I +FI + T + + + ++F Sbjct: 136 NILDIIAVGFDPDKTFIFQNSEFTKIYEMAIP--------------------IAKKINFS 175 Query: 158 SVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLK 217 ++ + + +Q K + DQ D E L Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAI---DQDPYWRLQRDFAESLG 232 Query: 218 TPKLFALTSPLL--TTASGTKMGKTLSG-----------------AIWLNKEMTSPYNFW 258 K AL S + T+ KM + L + Sbjct: 233 YYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQR 292 Query: 259 QYWRNIDDADVVSFAKRLTTLPMSEIDRM-AKLQGKEIN--EAKKIIATEITTMVHG--- 312 + + V + + ++ + E+ E K+ + ++I + Sbjct: 293 EKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQR 352 Query: 313 -REEAEK 318 R++AEK Sbjct: 353 RRKKAEK 359 >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Score = 44.5 bits (104), Expect = 4e-05 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 41 GYDLTASSLHAGHLTQLML-LFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEI 99 G T LH GHL + LQ+ G++ + ++ + + Sbjct: 18 GMRPTGK-LHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLK-------- 68 Query: 100 QENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESV 159 E + + F+ G +++ + L I S + R+ +++ + Sbjct: 69 ----EYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEI 124 Query: 160 RSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGER 215 +S L + + Y +LQA D + Y G DQ +I ++ R Sbjct: 125 KSELNYKDLSTAGFLIYPVLQAADIL----IYKAEGVPVGEDQVYHIELTREIARR 176 >3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni} Length = 322 Score = 37.7 bits (87), Expect = 0.005 Identities = 31/212 (14%), Positives = 74/212 (34%), Gaps = 31/212 (14%) Query: 49 LHAGH-LTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIK 107 LH G+ + + Q+ + + ++ +++++N K Sbjct: 16 LHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQD----------GEKLKQNSLKAA 64 Query: 108 GIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQ 167 ++F+ G ++ ++ +L F + + S + ++ + Sbjct: 65 ---AAFLSLGIDPQKSVFWLQSDVKEVMELYWILS---QFTPMGLLERAHSYKDKVAKGL 118 Query: 168 SLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERL--KTPKLFALT 225 S S F+Y +L A D + +D R+ G DQ ++ D+ ++ + ++F L Sbjct: 119 SASHGLFSYPVLMAADILL----FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP 174 Query: 226 SPLLTTAS-------GTKMGKTLSGAIWLNKE 250 + G KM K+ I + Sbjct: 175 EARVNEEVAVVVGTDGAKMSKSYQNTIDIFSS 206 >1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6 Length = 79 Score = 36.2 bits (84), Expect = 0.015 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 335 HMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ 394 +M T S+ K L L+ G++ S +A+ + +K++ ++ + ++ +I Sbjct: 9 NMATFSLGKHPHVE---LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG 65 Query: 395 D 395 Sbjct: 66 Q 66 >2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Score = 29.7 bits (67), Expect = 1.3 Identities = 6/46 (13%), Positives = 19/46 (41%) Query: 352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFD 397 L T+++K A A ++ +++ ++++ + D Sbjct: 10 LPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMED 55 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 Score = 29.3 bits (65), Expect = 1.7 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 274 KRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSIHS 333 K L+ LP+ E + +G+E+N K + + EEA E D+S+ Sbjct: 37 KGLSALPLEE----RRKRGQELNAIKAALEAALEAREKALEEAALKEALERERVDVSLPG 92 Query: 334 QHMP 337 + Sbjct: 93 ASLF 96 >1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* Length = 350 Score = 29.1 bits (65), Expect = 2.0 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 13/99 (13%) Query: 317 EKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSN- 375 ++ AM + I Q MP +SK ++ +L + +A + +E++ SN Sbjct: 18 VESMKKAMV--EFEIDLQKMPLGKLSKRQIQSAYSILNEVQQA-VSDGGSESQILDLSNR 74 Query: 376 ---------AIKINNSIISNEKLQIKLQDFDSTGNIKLS 405 +K + + E +Q K+Q D+ +I+++ Sbjct: 75 FYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVA 113 >3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Length = 213 Score = 28.9 bits (65), Expect = 2.2 Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 360 GFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQD 395 + EA R L + +K++ + +K + D Sbjct: 19 KLSDKEREAARILANGLVKVDGKTVREKKFAVGFMD 54 >1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Length = 167 Score = 28.3 bits (63), Expect = 2.8 Identities = 11/79 (13%), Positives = 19/79 (24%) Query: 247 LNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEI 306 +NKEM + + + + L E D KL + E+ Sbjct: 14 INKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEV 73 Query: 307 TTMVHGREEAEKAATAAME 325 + E Sbjct: 74 KQPEQNFKSLLDVFEKTYE 92 >1pg6_A Hypothetical protein SPYM3_0169; structural genomics, PSI, protein structure initiative; 1.70A {Streptococcus pyogenes MGAS8232} SCOP: b.82.5.2 Length = 243 Score = 28.3 bits (63), Expect = 3.8 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 30 LCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI----IGDPS 85 L G Y + ++ LF + G + G+ G Sbjct: 121 LALDGSAQ----YKMERQNIGKALFGGQGGLFVMTTEGLGTLLANSFGSIKKITLDGGTM 176 Query: 86 FRDESRRMMRSQEIQENIEKIKGIFSSF 113 D + + S+E+ +I G S Sbjct: 177 TIDNAHVVAWSRELDYDIHLENGFMQSI 204 >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 Score = 28.0 bits (61), Expect = 4.6 Identities = 21/185 (11%), Positives = 41/185 (22%), Gaps = 1/185 (0%) Query: 183 DFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLS 242 +AK YD + M + N K + +T A M Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 Query: 243 GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKII 302 + + + + + V T + G + Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327 Query: 303 ATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTIS-ISKDEVSRGMGLLTLIVKAGF 361 A I + + + E+ + + + I D+ L AG Sbjct: 328 AYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGI 387 Query: 362 ATSTN 366 Sbjct: 388 RAVEI 392 >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Length = 268 Score = 27.5 bits (60), Expect = 5.4 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 15/196 (7%) Query: 120 KTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMIL 179 +TD +E + + ++ + S + + +++ Sbjct: 29 ETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPPIMFALERMCEKYFKIKPLVV 88 Query: 180 QAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGK 239 L Y+ ++G D+ N + GI +P + T + Sbjct: 89 GPGIKTGLNIKYENPREVGA-DRIVNAVAGIH---LYGSPLIIVDFGTATTYCYINEEKH 144 Query: 240 TLSGAIWLN----------KEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPM-SEIDRMA 288 + G I + P ++ + VS + +++ + Sbjct: 145 YMGGVITPGIMISAEALYSRAAKLPRIEITKPSSVVGKNTVSAMQSGILYGYVGQVEGIV 204 Query: 289 KLQGKEINEAKKIIAT 304 K +E + K+IAT Sbjct: 205 KRMKEEAKQEPKVIAT 220 >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Score = 27.4 bits (60), Expect = 5.8 Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 392 KLQDFDSTGNIKLSFGKKNH 411 +L+D+D G + F ++ Sbjct: 318 ELRDYDVGGGFTVDFTDRSR 337 >1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1 Length = 589 Score = 27.3 bits (60), Expect = 6.6 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 162 RLKREQSLSFLEFN----YMILQAYDFVELAKNYDCRL 195 L+ ++++FN M L D + L YD RL Sbjct: 191 GLRGSTYDAWVKFNRFRREMTLTVLDLIVLFPFYDIRL 228 >3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Score = 27.2 bits (60), Expect = 7.4 Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 328 DMSIHSQHMPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSN---------AIK 378 +M +++ P ++ ++ G L I A A + ++ Sbjct: 46 EMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLR 105 Query: 379 INNSIISNEKLQIKLQDFDSTGNIKLS 405 I + ++L K+Q ++ G+I+++ Sbjct: 106 TPPLIRTQKELSEKIQLLEALGDIEIA 132 >3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 52 Score = 27.0 bits (60), Expect = 8.6 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 3/17 (17%) Query: 405 SFGK---KNHIICHLCG 418 SFGK K+H +C+ CG Sbjct: 6 SFGKRHNKSHTLCNRCG 22 >1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} SCOP: c.37.1.20 Length = 376 Score = 26.7 bits (58), Expect = 9.5 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 3/122 (2%) Query: 272 FAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI 331 A+ L I E + + +T ++ + + A + D Sbjct: 88 MAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEID 147 Query: 332 HSQHMPTISISKDEVSRGM---GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEK 388 + +VS LL ++ + R+H + N I+I+ S I Sbjct: 148 KISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFIC 207 Query: 389 LQ 390 Sbjct: 208 AG 209 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.134 0.392 Gapped Lambda K H 0.267 0.0551 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,501,828 Number of extensions: 160467 Number of successful extensions: 596 Number of sequences better than 10.0: 1 Number of HSP's gapped: 545 Number of HSP's successfully gapped: 58 Length of query: 418 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 323 Effective length of database: 3,390,050 Effective search space: 1094986150 Effective search space used: 1094986150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.5 bits)