BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (418 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/418 (100%), Positives = 418/418 (100%)

Query: 1   MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60
           MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL
Sbjct: 1   MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60

Query: 61  FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120
           FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK
Sbjct: 61  FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120

Query: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180
           TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ
Sbjct: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180

Query: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT 240
           AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT
Sbjct: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT 240

Query: 241 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK 300
           LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK
Sbjct: 241 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK 300

Query: 301 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG 360
           IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG
Sbjct: 301 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG 360

Query: 361 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG 418
           FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG
Sbjct: 361 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG 418


>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 556

 Score = 26.6 bits (57), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 25  RELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI---- 80
           RELDIL SQG +    G D    SL     T    LF  Q+      +L G  T +    
Sbjct: 409 RELDILDSQGNLPECEGADNPPVSLLKVEYTS--PLFKYQQAESVASALQGVNTVVELGV 466

Query: 81  -IGDPSFRD 88
             GDPS  D
Sbjct: 467 KTGDPSCMD 475


>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 25.4 bits (54), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEI 295
           +T+ Y  W++   I D   ++    L  + +  ID M  LQGK I
Sbjct: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 378 KINNSIISNEKLQIKLQDFDSTGNIKLSF 406
           K ++ +   + + +KL DFD  G IKLS 
Sbjct: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687


>537021.9.peg.1080_1 
          Length = 110

 Score = 24.3 bits (51), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 233 SGTKMGKTLSGAIWLNKEMTSPYNFWQYWR 262
           +G ++GKTL+GA      ++  Y  W  WR
Sbjct: 2   AGNQLGKTLAGAAEAAMHLSGCYPSW--WR 29


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,781
Number of Sequences: 1233
Number of extensions: 9967
Number of successful extensions: 33
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 328,796
effective HSP length: 76
effective length of query: 342
effective length of database: 235,088
effective search space: 80400096
effective search space used: 80400096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)