BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/418 (100%), Positives = 418/418 (100%) Query: 1 MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60 MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL Sbjct: 1 MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60 Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK Sbjct: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120 Query: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ Sbjct: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180 Query: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT 240 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT Sbjct: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT 240 Query: 241 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK 300 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK Sbjct: 241 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK 300 Query: 301 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG 360 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG Sbjct: 301 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG 360 Query: 361 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG 418 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG Sbjct: 361 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLCG 418 >gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter asiaticus str. psy62] Length = 556 Score = 26.6 bits (57), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 25 RELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI---- 80 RELDIL SQG + G D SL T LF Q+ +L G T + Sbjct: 409 RELDILDSQGNLPECEGADNPPVSLLKVEYTS--PLFKYQQAESVASALQGVNTVVELGV 466 Query: 81 -IGDPSFRD 88 GDPS D Sbjct: 467 KTGDPSCMD 475 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEI 295 +T+ Y W++ I D ++ L + + ID M LQGK I Sbjct: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 378 KINNSIISNEKLQIKLQDFDSTGNIKLSF 406 K ++ + + + +KL DFD G IKLS Sbjct: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 >537021.9.peg.1080_1 Length = 110 Score = 24.3 bits (51), Expect = 3.9, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 233 SGTKMGKTLSGAIWLNKEMTSPYNFWQYWR 262 +G ++GKTL+GA ++ Y W WR Sbjct: 2 AGNQLGKTLAGAAEAAMHLSGCYPSW--WR 29 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,781 Number of Sequences: 1233 Number of extensions: 9967 Number of successful extensions: 33 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 7 length of query: 418 length of database: 328,796 effective HSP length: 76 effective length of query: 342 effective length of database: 235,088 effective search space: 80400096 effective search space used: 80400096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)