RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780951|ref|YP_003065364.1| hypothetical protein
CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>gnl|CDD|183271 PRK11671, mltC, murein transglycosylase C; Provisional.
          Length = 359

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 11 MLAISPLLFSCSSKKGGEK 29
          +  I+PLL SCSS K G+ 
Sbjct: 7  LALIAPLLISCSSTKKGDT 25


>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
          (Trep_dent_lipo).  This entry represents a family of
          six predicted lipoproteins from a region of about 20
          tandemly arranged genes in the Treponema denticola
          genome. Two other neighbouring genes share the
          lipoprotein signal peptide region but do not show more
          extensive homology. The function of this locus is
          unknown.
          Length = 394

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 9  VLMLAISPLLFSCSSK-KGGEKKGAEKKTSAPLKNGKN 45
          +L+LA+  LLFSCS + K   +   + ++S  ++  +N
Sbjct: 8  ILILAV--LLFSCSKEVKEQREMRIKVESSMKIEPKEN 43


>gnl|CDD|149063 pfam07790, DUF1628, Protein of unknown function (DUF1628).  The
          sequences making up this family are derived from
          hypothetical proteins of unknown function expressed by
          various archaeal species. The region in question is
          approximately 160 residues long.
          Length = 78

 Score = 25.2 bits (56), Expect = 3.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 5  IIGTVLMLAISPLLFS 20
          +IG VLM+AI+ +L +
Sbjct: 6  VIGVVLMVAITVILAA 21


>gnl|CDD|148562 pfam07009, DUF1312, Protein of unknown function (DUF1312).  This
          family consists of several bacterial proteins of around
          120 residues in length. The function of this family is
          unknown.
          Length = 113

 Score = 24.5 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 5  IIGTVLMLAISPLLFSCSSKKGGEKKGAE 33
          II  +++L+ SPL+F   S K G  K A 
Sbjct: 2  IIIILIVLSFSPLVFFYKSGKDGNNKKAV 30


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.311    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 686,692
Number of extensions: 24364
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 7
Length of query: 49
Length of database: 5,994,473
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,519,097
Effective search space: 149015619
Effective search space used: 149015619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.1 bits)