BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780951|ref|YP_003065364.1| hypothetical protein
CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780951|ref|YP_003065364.1| hypothetical protein CLIBASIA_04250 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 49

 Score = 98.2 bits (243), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  MNTRIIGTVLMLAISPLLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR 49
          MNTRIIGTVLMLAISPLLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR
Sbjct: 1  MNTRIIGTVLMLAISPLLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR 49


>gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 358

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 1   MNTRIIGTVLMLAISPLLFSCSSK 24
           + T IIGT ++L  + L +SC S+
Sbjct: 97  ITTNIIGTFILLEETRLWWSCLSQ 120


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 762

 Score = 20.4 bits (41), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 17 LLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR 49
          L F+  + +G      +  TS P K  KN++ R
Sbjct: 16 LAFNIITPQGTPPSNEQTTTSTPSKIKKNETNR 48


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.311    0.127    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,585
Number of Sequences: 1233
Number of extensions: 861
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 328,796
effective HSP length: 22
effective length of query: 27
effective length of database: 301,670
effective search space:  8145090
effective search space used:  8145090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 31 (16.5 bits)