HHsearch alignment for GI: 254780952 and conserved domain: COG1112

>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].
Probab=97.42  E-value=0.00013  Score=50.50  Aligned_cols=83  Identities=20%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---HH----HCCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf             210253210775113468878775111126788759999530688---63----11332201345542057664067876
Q gi|254780952|r  232 KIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQC---IY----EWRGAQFSHILNFQKDFKDANIIKLE  304 (685)
Q Consensus       232 r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQs---IY----~fRGA~~~~~~~f~~~f~~~~~i~L~  304 (685)
T Consensus       488 ~fd~viiDEAs-----Q~~~~~~~~~l--~~-~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~-~~~~~L~  558 (767)
T COG1112         488 EFDYVIIDEAS-----QATEPSALIAL--SR-AKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGP-EVVYLLR  558 (767)
T ss_pred             CCCEEEEECCC-----HHCCHHHHHHH--HH-HCEEEEECCHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_conf             57789994411-----01112333235--34-2558991463107872002112630122678999974043-1336778


Q ss_pred             ECCCCCHHHHHHHHHHHHH
Q ss_conf             1267514678752024443
Q gi|254780952|r  305 QNYRSTTHILNTANKLISH  323 (685)
Q Consensus       305 ~NyRS~~~Ii~~an~li~~  323 (685)
T Consensus       559 ~qYRm~~~i~~f~s~~fY~  577 (767)
T COG1112         559 VQYRMHPDIIAFSSKVFYN  577 (767)
T ss_pred             HHHCCCHHHHHCCHHCEEC
T ss_conf             7617788898331322557