HHsearch alignment for GI: 254780952 and conserved domain: COG1112
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].
Probab=97.42 E-value=0.00013 Score=50.50 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=48.1
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---HH----HCCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf 210253210775113468878775111126788759999530688---63----11332201345542057664067876
Q gi|254780952|r 232 KIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQC---IY----EWRGAQFSHILNFQKDFKDANIIKLE 304 (685)
Q Consensus 232 r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQs---IY----~fRGA~~~~~~~f~~~f~~~~~i~L~ 304 (685)
T Consensus 488 ~fd~viiDEAs-----Q~~~~~~~~~l--~~-~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~-~~~~~L~ 558 (767)
T COG1112 488 EFDYVIIDEAS-----QATEPSALIAL--SR-AKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGP-EVVYLLR 558 (767)
T ss_pred CCCEEEEECCC-----HHCCHHHHHHH--HH-HCEEEEECCHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_conf 57789994411-----01112333235--34-2558991463107872002112630122678999974043-1336778
Q ss_pred ECCCCCHHHHHHHHHHHHH
Q ss_conf 1267514678752024443
Q gi|254780952|r 305 QNYRSTTHILNTANKLISH 323 (685)
Q Consensus 305 ~NyRS~~~Ii~~an~li~~ 323 (685)
T Consensus 559 ~qYRm~~~i~~f~s~~fY~ 577 (767)
T COG1112 559 VQYRMHPDIIAFSSKVFYN 577 (767)
T ss_pred HHHCCCHHHHHCCHHCEEC
T ss_conf 7617788898331322557