HHsearch alignment for GI: 254780952 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].

Probab=97.09  E-value=0.00085  Score=44.81  Aligned_cols=77  Identities=22%  Similarity=0.373  Sum_probs=53.5

Q ss_pred             HCCCHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf             62998899998538-----9896699958898835899999999998089997886762114799999999999851645
Q gi|254780952|r   28 KGLNAQQTHAVTIP-----DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK  102 (685)
Q Consensus        28 ~~Ln~~Q~~av~~~-----~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~  102 (685)
T Consensus       197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rFg--  270 (730)
T COG1198         197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARFG--  270 (730)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC----CEEEEEECCCCCHHHHHHHHHHHHC--
T ss_conf             1038899999999997505666536767778858999999999999759----8799995653456999999999867--


Q ss_pred             CCEEEEHHH
Q ss_conf             878961789
Q gi|254780952|r  103 IPRIQTFHS  111 (685)
Q Consensus       103 ~~~i~T~Hs  111 (685)
T Consensus       271 -~~v~vlHS  278 (730)
T COG1198         271 -AKVAVLHS  278 (730)
T ss_pred             -CCHHHHCC
T ss_conf             -87453146