HHsearch alignment for GI: 254780952 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=97.55 E-value=0.00038 Score=47.22 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCCCHHHHH----HCCCHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCH-H--HEEEEEECHHHH
Q ss_conf 6832158887----629988999985-38989669995889883589999999999808-9997-8--867621147999
Q gi|254780952|r 18 FVPSCVPNYL----KGLNAQQTHAVT-IPDDTPLLILAGAGTGKTTVLIARMLHLICHK-EIPP-S--KILAMTFTNQAI 88 (685)
Q Consensus 18 ~~~~~~~~~l----~~Ln~~Q~~av~-~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p-~--~Il~iTFT~~AA 88 (685)
T Consensus 7 ~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred HCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
T ss_conf 34899999999850899878999999985898469986899973799999999999860688888856999957078887
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998516
Q gi|254780952|r 89 QEMKNRLACYLG 100 (685)
Q Consensus 89 ~el~~Ri~~~l~ 100 (685)
T Consensus 87 ~Di~~rL~~~~~ 98 (814)
T COG1201 87 NDIRRRLEEPLR 98 (814)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999