HHsearch alignment for GI: 254780952 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=90.91 E-value=0.9 Score=24.06 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=43.9
Q ss_pred CHHHHHHHHCC---CC-C-CEEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98899998538---98-9-669995889883589999999999808-999788676211479999999999985164587
Q gi|254780952|r 31 NAQQTHAVTIP---DD-T-PLLILAGAGTGKTTVLIARMLHLICHK-EIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP 104 (685)
Q Consensus 31 n~~Q~~av~~~---~~-~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~ 104 (685)
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~-~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPF-RTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCCC
T ss_conf 35567999998732255751899916888719999999999753113545628996558-99999999999875123554
Q ss_pred E
Q ss_conf 8
Q gi|254780952|r 105 R 105 (685)
Q Consensus 105 ~ 105 (685)
T Consensus 276 ~ 276 (733)
T COG1203 276 I 276 (733)
T ss_pred C
T ss_conf 3