HHsearch alignment for GI: 254780952 and conserved domain: COG1643

Probab=97.09  E-value=0.0068  Score=38.60  Aligned_cols=96  Identities=25%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             HHHHCCCCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC----------
Q ss_conf             99853898966999-5889883589999999999808999788676211479999999999985164587----------
Q gi|254780952|r   36 HAVTIPDDTPLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP----------  104 (685)
Q Consensus        36 ~av~~~~~~~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~----------  104 (685)
T Consensus        60 ~ai~---~~~vvii~getGsGKTTqlP~---~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe  133 (845)
T COG1643          60 KAIE---QNQVVIIVGETGSGKTTQLPQ---FLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFE  133 (845)
T ss_pred             HHHH---HCCEEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf             9998---697899867998875878899---9996001668759965843899999999999983898676543799962


Q ss_pred             ---------EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             ---------896178999999998499848798980728999999
Q gi|254780952|r  105 ---------RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRT  140 (685)
Q Consensus       105 ---------~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~  140 (685)
T Consensus       134 ~~~s~~Trik~mT-dGiLlrei~~D~~Ls~y--s~vIiDEaHERS  175 (845)
T COG1643         134 SKVSPRTRIKVMT-DGILLREIQNDPLLSGY--SVVIIDEAHERS  175 (845)
T ss_pred             CCCCCCCEEEEEC-CHHHHHHHHHCCCCCCC--CEEEEECHHHHH
T ss_conf             2678771468951-47999998438020458--779970133556