HHsearch alignment for GI: 254780952 and conserved domain: COG4581

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].

Probab=93.24  E-value=0.38  Score=26.62  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             CHHHHHHCCCHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf             158887629988999985389-8966999588988358999999999980899978867621147999999999998
Q gi|254780952|r   22 CVPNYLKGLNAQQTHAVTIPD-DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC   97 (685)
Q Consensus        22 ~~~~~l~~Ln~~Q~~av~~~~-~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~   97 (685)
T Consensus       112 ~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~----qrviYTsPIKALsNQKyrdl~~  184 (1041)
T COG4581         112 PAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG----QRVIYTSPIKALSNQKYRDLLA  184 (1041)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCC----CCEEECCCHHHHHHHHHHHHHH
T ss_conf             787489896789999999984799579973378985559999999998718----9448616306642067999999