HHsearch alignment for GI: 254780952 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.19 E-value=0.044 Score=33.03 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCCCHHHHHHC-----CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHH-HHHHHCCCCC-----HHHEEEEEECHH
Q ss_conf 83215888762-----998899998538-98966999588988358999999-9999808999-----788676211479
Q gi|254780952|r 19 VPSCVPNYLKG-----LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARM-LHLICHKEIP-----PSKILAMTFTNQ 86 (685)
Q Consensus 19 ~~~~~~~~l~~-----Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri-~~Ll~~~~~~-----p~~Il~iTFT~~ 86 (685)
T Consensus 16 L~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRE 95 (423)
T PRK04837 16 LHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRE 95 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH
T ss_conf 69999999997799999999999999996799889989998749999999999999837453345567861899938899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780952|r 87 AIQEMKNRLACY 98 (685)
Q Consensus 87 AA~el~~Ri~~~ 98 (685)
T Consensus 96 La~Qi~~~~~~l 107 (423)
T PRK04837 96 LAVQIHADAEPL 107 (423)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997