HHsearch alignment for GI: 254780952 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.21 E-value=0.052 Score=32.52 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHH
Q ss_conf 8989669995889883589999999999808999788676211479999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQ 89 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~ 89 (685)
T Consensus 22 p~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~---GE~~lyitl~E~~~~ 67 (501)
T PRK09302 22 PKGRPTLVSGTAGTGKTLFALQFLHNGIKSF---GEPGVFVTFEESPED 67 (501)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHH
T ss_conf 8997799983899999999999999998855---997899985799999