HHsearch alignment for GI: 254780952 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=100.00 E-value=0 Score=722.40 Aligned_cols=302 Identities=27% Similarity=0.445 Sum_probs=236.0
Q ss_pred HCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 62998899998538989669995889883589999999999808999788676211479999999999985164587896
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
T Consensus 195 ~PLn~~Qr~Avi-~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~~ 273 (684)
T PRK11054 195 SPLNPSQARAVV-NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITAR 273 (684)
T ss_pred CCCCHHHHHHEE-ECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999989995727-4799648983389970779999999999759998667786863499999999999975499983786
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC------------------C--CCCCC-CC----HHHHH
Q ss_conf 178999999998499848798980728999999999999973------------------9--98547-89----89999
Q gi|254780952|r 108 TFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDL------------------Q--IDDKD-YD----PHEVI 162 (685)
Q Consensus 108 T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~------------------~--~~~~~-~~----~~~~~ 162 (685)
T Consensus 274 TFHSlal~ILr~~~~~~p~is~~~~d~~~r~~~~i~~~l~~~~~~~~~~k~~~~~L~~e~~~~i~~~~~~~~~~l~~~l~ 353 (684)
T PRK11054 274 TFHALALHIIQQGSKKVPVISKLENDSKARHALWIAHWLKQCSEKKAQAKGWRKWLTEEMKWPVPEGNFWDDEKLQRRLA 353 (684)
T ss_pred EHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 59999999999844457876620004677787799999988655466666788765555404665300013177999999
Q ss_pred HHHHHHHHCCCCHHHH----HHC-------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCC
Q ss_conf 9986675415896461----211-------46538999999999755777753001110001245430120688974012
Q gi|254780952|r 163 EKIDYWQNRGWNPKDI----PQS-------SLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHE 231 (685)
Q Consensus 163 ~~i~~~k~~~~~~~~~----~~~-------~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~ 231 (685)
T Consensus 354 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~l~~ply~aYe~~Lk~~~~IDFdDmI~~a~~ll~~~----~~~~ 429 (684)
T PRK11054 354 SRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQAVVILEKG----RFIS 429 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHH
T ss_conf 999999876431012588876236377889888778999999999999998759988799999999998707----1442
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCH
Q ss_conf 21025321077511346887877511112678875999953068863113322013455420576640678761267514
Q gi|254780952|r 232 KIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTT 311 (685)
Q Consensus 232 r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~ 311 (685)
T Consensus 430 ~~ryILVDEfQDiS~~Q~~Ll~aL~~~~---~~~~LfaVGDD~QSIYrFrGAdi~~~~~F~~~F~~a~~~~L~~nYRs~~ 506 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLEALRKQN---SQTTLFAVGDDWQAIYRFSGADVSLTTAFHERFGEGTICHLDTTYRFNS 506 (684)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCHHEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 3768998763369999999999987339---9975999806742101126888489998987679967997878888865
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 67875202444343201012222102
Q gi|254780952|r 312 HILNTANKLISHNKQRFDKKLFTQRD 337 (685)
Q Consensus 312 ~Ii~~an~li~~n~~r~~k~l~~~~~ 337 (685)
T Consensus 507 ~I~~~An~fI~~Np~Ql~K~l~s~~~ 532 (684)
T PRK11054 507 RIGEVANRFIQQNPHQLKKPLNSLTK 532 (684)
T ss_pred HHHHHHHHHHHHCHHHCCCCCCCCCC
T ss_conf 99999999998495741877565557