HHsearch alignment for GI: 254780952 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=96.44 E-value=0.04 Score=33.35 Aligned_cols=89 Identities=29% Similarity=0.365 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHCC------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH----HHHHHHH-----
Q ss_conf 2998899998538------989669995889883589999999999808999788676211479----9999999-----
Q gi|254780952|r 29 GLNAQQTHAVTIP------DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ----AIQEMKN----- 93 (685)
Q Consensus 29 ~Ln~~Q~~av~~~------~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~----AA~el~~----- 93 (685)
T Consensus 416 ~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~--~kRILFLvDR~~L~~QA~~~F~~~~~~~ 493 (1126)
T PRK11448 416 GLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKR--FKRILFLVDRRALGEQALDAFKDTKIEG 493 (1126)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 78688999999999999809854688724888589899999999996587--6725798565899999999875434545
Q ss_pred --HHHH-----HCC------CCCCEEEEHHHHHHHHHHH
Q ss_conf --9998-----516------4587896178999999998
Q gi|254780952|r 94 --RLAC-----YLG------EKIPRIQTFHSFCASILRK 119 (685)
Q Consensus 94 --Ri~~-----~l~------~~~~~i~T~Hsf~~~il~~ 119 (685)
T Consensus 494 ~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~ 532 (1126)
T PRK11448 494 NQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQS 532 (1126)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCC
T ss_conf 666400220010256787877719997307899875235