HHsearch alignment for GI: 254780952 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=98.16 E-value=1.1e-05 Score=57.66 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=28.3
Q ss_pred EEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf 96113455669836984685766842212996787899999999985864116998313
Q gi|254780952|r 574 MTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 574 ~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
T Consensus 660 ~TIHKSQG~TVDra~VLat-----~~---m-------drhltYVAMTRHRe~~~ly~~~ 703 (992)
T PRK13889 660 ATIHKAQGMTVDRTHVLAT-----PG---M-------DAHGSYVALSRHRDGVDLHYGR 703 (992)
T ss_pred HHHHHHCCCCCCEEEEECC-----CC---C-------CHHHHHHHHCCCCCCCHHEECH
T ss_conf 6657633864014899367-----88---5-------3555242310242211110013