HHsearch alignment for GI: 254780952 and conserved domain: TIGR00376
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=98.15 E-value=0.00088 Score=44.70 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=59.3
Q ss_pred HCCCHHHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 62998899998538989--66999588988358999999999980899978867621147999999999998516-4587
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDT--PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG-EKIP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~--~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~-~~~~ 104 (685)
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~d~~~~~~~~~~p~~~~~ 278 (709)
T TIGR00376 201 PNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-G-PEERVLVTAPSNIAVDNLLERLAPLYPDLKLL 278 (709)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-C-CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 232234677765431234416872677776215689999999852-8-53306762353103778888876414541022
Q ss_pred EEE
Q ss_conf 896
Q gi|254780952|r 105 RIQ 107 (685)
Q Consensus 105 ~i~ 107 (685)
T Consensus 279 ~~g 281 (709)
T TIGR00376 279 RLG 281 (709)
T ss_pred ECC
T ss_conf 226