HHsearch alignment for GI: 254780952 and conserved domain: TIGR00376

>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=98.15  E-value=0.00088  Score=44.70  Aligned_cols=78  Identities=29%  Similarity=0.391  Sum_probs=59.3

Q ss_pred             HCCCHHHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC-CCCC
Q ss_conf             62998899998538989--66999588988358999999999980899978867621147999999999998516-4587
Q gi|254780952|r   28 KGLNAQQTHAVTIPDDT--PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG-EKIP  104 (685)
Q Consensus        28 ~~Ln~~Q~~av~~~~~~--~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~-~~~~  104 (685)
T Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~d~~~~~~~~~~p~~~~~  278 (709)
T TIGR00376       201 PNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-G-PEERVLVTAPSNIAVDNLLERLAPLYPDLKLL  278 (709)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-C-CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             232234677765431234416872677776215689999999852-8-53306762353103778888876414541022


Q ss_pred             EEE
Q ss_conf             896
Q gi|254780952|r  105 RIQ  107 (685)
Q Consensus       105 ~i~  107 (685)
T Consensus       279 ~~g  281 (709)
T TIGR00376       279 RLG  281 (709)
T ss_pred             ECC
T ss_conf             226