HHsearch alignment for GI: 254780952 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=93.33 E-value=0.6 Score=25.25 Aligned_cols=124 Identities=17% Similarity=0.302 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECH--HHHH--HHCCCCCCHHH-------HHHHCCCCCCEEEEE
Q ss_conf 253210775113468878775111126788759999530--6886--31133220134-------554205766406787
Q gi|254780952|r 235 YIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDE--NQCI--YEWRGAQFSHI-------LNFQKDFKDANIIKL 303 (685)
Q Consensus 235 ~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~--dQsI--Y~fRGA~~~~~-------~~f~~~f~~~~~i~L 303 (685)
T Consensus 335 LlviDESHVT~-PQ---~~GMY~-------------GD~SRK~~LVeYGFR--LPSAlDNRPLkfeEF~~~~~--Q~vyV 393 (667)
T TIGR00631 335 LLVIDESHVTL-PQ---IGGMYN-------------GDRSRKQTLVEYGFR--LPSALDNRPLKFEEFEERIN--QVVYV 393 (667)
T ss_pred EEEEEECCCCH-HH---HHHHHH-------------CCHHHHHHHHHCCCC--CCHHCCCCCCCHHHHHHHCC--CEEEE
T ss_conf 89884025750-22---134413-------------046765433202775--30013587898799998559--88999
Q ss_pred E------ECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC-CCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHH
Q ss_conf 6------126751467875202444343201012222102355-674488731553100000000136665311365303
Q gi|254780952|r 304 E------QNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHD-DAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNI 376 (685)
Q Consensus 304 ~------~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~-~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~di 376 (685)
T Consensus 394 SATPG~~E~e~S~~~vvE---Qii--------------RPTGLlDP~i~VRP~~g---QvdDL~~EI~~R~~~~E---Rv 450 (667)
T TIGR00631 394 SATPGDYELEQSGGNVVE---QII--------------RPTGLLDPEIEVRPTDG---QVDDLLSEIRQRVARNE---RV 450 (667)
T ss_pred ECCCCHHHHHHHCCCEEE---EEE--------------CCCCCCCCEEEEECCCC---HHHHHHHHHHHHHHCCC---CE
T ss_conf 638858999732691589---987--------------37786488368835851---58888999999997289---48
Q ss_pred HHEECCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 11101001478899875202332032
Q gi|254780952|r 377 AILVRTSWQTRKFEDAFLEQEIPHKV 402 (685)
Q Consensus 377 AVL~Rtn~~~~~l~~~L~~~gIP~~~ 402 (685)
T Consensus 451 LVTTLTKkMAEdLTdYl~E~Gikv~Y 476 (667)
T TIGR00631 451 LVTTLTKKMAEDLTDYLKELGIKVRY 476 (667)
T ss_pred EEEEHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99820167788999997058837987