HHsearch alignment for GI: 254780952 and conserved domain: TIGR00929
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=90.78 E-value=0.36 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=14.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 6999588988358999999999980
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
T Consensus 121 L~~~~~~~~-~~~~~~~~~~~~~~~ 144 (931)
T TIGR00929 121 LTLVYKPDS-KTAVLEKFLKKLAKK 144 (931)
T ss_pred EEEEEECCC-HHHHHHHHHHHHCCC
T ss_conf 999984661-245788988763010