HHsearch alignment for GI: 254780952 and conserved domain: TIGR01073
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1308.76 Aligned_cols=626 Identities=39% Similarity=0.658 Sum_probs=589.6
Q ss_pred HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----
Q ss_conf 8762998899998538989669995889883589999999999808999788676211479999999999985164----
Q gi|254780952|r 26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE---- 101 (685)
Q Consensus 26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---- 101 (685)
T Consensus 1 Ll~~LN~~Q~~AV~-tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaq 79 (811)
T TIGR01073 1 LLAGLNPEQREAVK-TTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQ 79 (811)
T ss_pred CCCCCCHHHHHHHH-HCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90102489999973-03784101013788731057899999997223698504655322053167899999985246654
Q ss_pred ---------------------------CCCEEEEHHHHHHHHHHHHHH----HCC--CCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf ---------------------------587896178999999998499----848--7989807289999999999999-
Q gi|254780952|r 102 ---------------------------KIPRIQTFHSFCASILRKHGE----VVG--LPTDFAILDSAESRTIIKQLLK- 147 (685)
Q Consensus 102 ---------------------------~~~~i~T~Hsf~~~il~~~~~----~~g--~~~~~~i~~~~~~~~~~~~~~~- 147 (685)
T Consensus 80 qefsqrwellGkyeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~~l~K~i~~~ 159 (811)
T TIGR01073 80 QEFSQRWELLGKYEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQLSLMKDIVKK 159 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 57767888743466789999988652142323038999999888888889876211454157611178889999999744
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHH
Q ss_conf 73998547898999999866754158964612114653-899999999975577775300111000124543012-0688
Q gi|254780952|r 148 DLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTE-DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHV 225 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~-~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v 225 (685)
T Consensus 160 ~~dlD~Kkf~Pr~i~~~IS~~KN~l~~P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~LDFDDLIm~t~~LF~~~P~V 239 (811)
T TIGR01073 160 DKDLDPKKFEPRSILGTISNAKNELLSPEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNALDFDDLIMTTINLFQRVPDV 239 (811)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 20477777885012554676651478868999730688788899999999999987614784212777548988731799
Q ss_pred HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCC
Q ss_conf 9740122102532107751134688787751111---------2678875999953068863113322013455420576
Q gi|254780952|r 226 LKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKE---------DSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFK 296 (685)
Q Consensus 226 ~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~---------~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~ 296 (685)
T Consensus 240 L~yYq~kF~yilvDEYQDTN~AQY~lv~~La~~~~E~~vdv~E~~~~~~nlcvVGDaDQSIY~wRGAdi~NIL~FEkDyp 319 (811)
T TIGR01073 240 LEYYQRKFQYILVDEYQDTNRAQYTLVRLLASRGEERQVDVSEADVRFRNLCVVGDADQSIYGWRGADITNILSFEKDYP 319 (811)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHCCC
T ss_conf 99988407467773344435899999998601888763455535568664478728865500120101563320100132
Q ss_pred C-------CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHH
Q ss_conf 6-------406787612675146787520244434320101222210235567448873155310000000013666531
Q gi|254780952|r 297 D-------ANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNT 369 (685)
Q Consensus 297 ~-------~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~ 369 (685)
T Consensus 320 ~rlldGetA~~i~LEQNYRST~~IL~AAN~VI~~N~~R~pK~LWT~~~~G--~~I~~Y~A~~E~dEA~Fv~~~I~~l~~~ 397 (811)
T TIGR01073 320 NRLLDGETATTILLEQNYRSTKNILQAANEVIEHNSNRKPKNLWTENSSG--EKITYYEADTERDEAQFVAGEIDKLRKN 397 (811)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 31126763117763247521467999999998524788897300348899--6057872488101789999999998741
Q ss_pred C--CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf 1--36530311101001478899875202332032033-10001121028999998846630245753046875465024
Q gi|254780952|r 370 G--MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKE 446 (685)
Q Consensus 370 g--~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~ 446 (685)
T Consensus 398 ~P~~~~~D~AiLYRTNAQSR~~EE~l~k~n~pY~iVGG~kFYdRkEIkD~LAYLR~~~Np~D~~sL~RIiNvPKRGiG~~ 477 (811)
T TIGR01073 398 GPELKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDDDVSLERIINVPKRGIGAS 477 (811)
T ss_pred CCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH
T ss_conf 75100137038872672007899999864898066346102305779999999888617898833210123888764467
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf 66888878877398468999764104679977854334343335666531024660222333477709667885068845
Q gi|254780952|r 447 SLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSE 526 (685)
Q Consensus 447 ~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 526 (685)
T Consensus 478 s~~~~~~~a~~~~iS~~~Ai~~~~~i~~~~~ks~~~~~~F~~~~~~l~~~~~~~~~~e~~~~vL~~SgY~~mL~~~~t~e 557 (811)
T TIGR01073 478 SLEKIRSYALELNISLFEAIGEIDEIGTLAAKSANALLQFAEMIENLRQQQEFLSVTEVVEEVLDKSGYREMLKAEKTEE 557 (811)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 89999999986088888998788750235689999999999999999998600028899999851234078997407923
Q ss_pred HHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHCCC------CCCCEEEEEECCCCCCCCCEEE
Q ss_conf 58988843999999983026------------88999997576542211154------5893699961134556698369
Q gi|254780952|r 527 KSQERLDNLRELLSIIEKHE------------TLEGFVLQAPLRENLGSFIP------DSNCIQIMTLHAAKGLEFDTVF 588 (685)
Q Consensus 527 ~~~~~l~~l~~l~~~~~~~~------------sl~~fl~~~~~~~~~~~~~~------~~d~V~i~TIH~SKGLEfd~V~ 588 (685)
T Consensus 558 -a~~RlENl~E~~~v~~~Fe~~~~~Edpes~~~L~dFL~~~aL~~D~D~l~~~E~~~~Gdg~VtLMTLHaAKGLEFPVVF 636 (811)
T TIGR01073 558 -AQSRLENLDEFLSVTKEFEDESAEEDPESIKSLVDFLTDLALVSDLDDLEEEEEEAEGDGAVTLMTLHAAKGLEFPVVF 636 (811)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHCCCCCCCCEEE
T ss_conf -4556899999999998453137766730033799999878765424433654011379964863134302567776256
Q ss_pred ECCCCCCCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf 8468576684221299---67878999999999858641169983132112576543335556888723314783
Q gi|254780952|r 589 ISGWEQGLLPHQLSIN---EGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP 660 (685)
Q Consensus 589 i~gl~~g~~P~~~~~~---~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~ 660 (685)
T Consensus 637 L~GlEeG~FPh~RsL~~~d~~~lEEERRLAYVGITRA~~~LyLT~A~~R~lfG~-----~~~~~PSRFl~EIP~~ 706 (811)
T TIGR01073 637 LIGLEEGVFPHSRSLMEDDEKELEEERRLAYVGITRAEEELYLTHATSRTLFGR-----IQMNPPSRFLNEIPDE 706 (811)
T ss_pred ECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC-----CCCCCCCCCHHCCCHH
T ss_conf 548765567213404767811356788888666554431000100334253223-----3689875423308977