HHsearch alignment for GI: 254780952 and conserved domain: TIGR01075

>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1207.55  Aligned_cols=620  Identities=38%  Similarity=0.629  Sum_probs=591.6

Q ss_pred             HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC--CC-
Q ss_conf             876299889999853898966999588988358999999999980899978867621147999999999998516--45-
Q gi|254780952|r   26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG--EK-  102 (685)
Q Consensus        26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~--~~-  102 (685)
T Consensus         1 lLd~LN~~QreaVaap~-~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~~   79 (741)
T TIGR01075         1 LLDGLNDKQREAVAAPP-GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSARH   79 (741)
T ss_pred             CCCCCCHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             96556657788740342-25548730688850247888998874078998535632003478999999999986201143


Q ss_pred             ---CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             ---87896178999999998499848798980728999999999999973998547898999999866754158964612
Q gi|254780952|r  103 ---IPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIP  179 (685)
Q Consensus       103 ---~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~  179 (685)
T Consensus        80 ~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRlik~~n~~e~~~pPrq~~W~IN~qKdeGlRp~~i~  159 (741)
T TIGR01075        80 QLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLIKSLNLDEKQFPPRQAMWYINNQKDEGLRPEHIE  159 (741)
T ss_pred             EEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCC
T ss_conf             25553230577899999986675346861242364065799999999863876333671344201036656788832357


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             114653899999999975577775300111000124543012-0688974012210253210775113468878775111
Q gi|254780952|r  180 QSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQK  258 (685)
Q Consensus       180 ~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~  258 (685)
T Consensus       160 ~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg~  239 (741)
T TIGR01075       160 AFDNDPVERTWIKIYAEYQEACDRAGLVDFAELLLRAYELLRNKPHILQHYQERFKHILVDEFQDTNKIQYAWIRLLAGE  239 (741)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             76777689999999999875306377345899999999975289589999987610054323245006999999996089


Q ss_pred             CCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             12678875999953068863113322013455420576640678761267514678752024443432010122221023
Q gi|254780952|r  259 EDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDC  338 (685)
Q Consensus       259 ~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~  338 (685)
T Consensus       240 ~-----~~V~~VGDDDQsIYgwRGA~veni~~fl~dF~~~~tirLEQNYRS~~nIL~AAN~lIanN~~RlGK~LwT~g~~  314 (741)
T TIGR01075       240 T-----GNVMIVGDDDQSIYGWRGAQVENIQKFLKDFPIAETIRLEQNYRSTANILAAANALIANNDERLGKNLWTDGEV  314 (741)
T ss_pred             C-----CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf             9-----63798855874201245764188899997467888534200322178899998899852886567530134567


Q ss_pred             CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHH
Q ss_conf             5567448873155310000000013666531136530311101001478899875202332032033-100011210289
Q gi|254780952|r  339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDAL  417 (685)
Q Consensus       339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~ll  417 (685)
T Consensus       315 G--e~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQSRv~Ee~L~~~~iPYriYGG~RFFERqEIKdAL  392 (741)
T TIGR01075       315 G--EPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQSRVLEEALLRASIPYRIYGGMRFFERQEIKDAL  392 (741)
T ss_pred             C--CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             8--70257651341378999999999998658964136566325524689999997448980430786325678899999


Q ss_pred             HHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99998846630245753046875465024668888788773984689997641046799778543343433356665310
Q gi|254780952|r  418 AYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCS  497 (685)
Q Consensus       418 a~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~  497 (685)
T Consensus       393 aYLRL~~Nr~DDaAfeRViNtP~RGiG~rTld~~r~~~r~~g~tLWqA~~~~~q~~~Lagra~~al~~F~~Li~~L~~~~  472 (741)
T TIGR01075       393 AYLRLIANRNDDAAFERVINTPTRGIGDRTLDEVRQAARERGLTLWQAAVELLQEKVLAGRAASALVRFVELIEALAEET  472 (741)
T ss_pred             HHHHHHCCCCCCCHHCCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987148875303203004888987546799999876520741899999987633679999999999999999998755


Q ss_pred             CCCCCHHHHHHHHHHCCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHH
Q ss_conf             24660222333477709667885068-84558988843999999983026--------------------8899999757
Q gi|254780952|r  498 KKMDPAPIANMILEQSGYMAMWKNNK-SSEKSQERLDNLRELLSIIEKHE--------------------TLEGFVLQAP  556 (685)
Q Consensus       498 ~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~l~~l~~~~~~~~--------------------sl~~fl~~~~  556 (685)
T Consensus       473 ~~m~L~~~~d~~~k~SgL~~~Y~~ekrgg~~~~~R~eNLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aa  552 (741)
T TIGR01075       473 ADMPLHEQTDHVLKDSGLREMYQQEKRGGEKGQARIENLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAA  552 (741)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             31446888999985003678999972146432357778899998873046464543326777677730334778877887


Q ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH-HHHHHHHHHHHHHHHHHHHEEEEEECCCCC
Q ss_conf             6542211154589369996113455669836984685766842212996-787899999999985864116998313211
Q gi|254780952|r  557 LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE-GNVEGERRLAYVGITRAKKKCHLFYTINRR  635 (685)
Q Consensus       557 ~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~-~~~eEErRL~YVA~TRAk~~L~l~~~~~~~  635 (685)
T Consensus       553 LEaGe~qa~~~~~aVqLMTlHsAKGLEFp~VFlvG~EeG~FPS~~Sl~E~GrLEEERRL~YVgiTRA~~kL~ityAe~Rr  632 (741)
T TIGR01075       553 LEAGEGQADAGEDAVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLDERGRLEEERRLAYVGITRARKKLTITYAEARR  632 (741)
T ss_pred             HHCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             64150010101235466665632024557524662026778311210348695278888989978775665576886456


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf             25765433355568887233147
Q gi|254780952|r  636 THDFTRVERYQPSQVSQFLLELY  658 (685)
Q Consensus       636 ~~~~~~~~~~~~~~~SrFl~El~  658 (685)
T Consensus       633 LyGk~~y-----~~pSRFi~ElP  650 (741)
T TIGR01075       633 LYGKEEY-----HIPSRFIRELP  650 (741)
T ss_pred             HHHHCCC-----CCCCCHHHHCC
T ss_conf             6310026-----88741143065