HHsearch alignment for GI: 254780952 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.93 E-value=0.0015 Score=43.21 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHCCC---HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 68321588876299---8899998538989669995889883589999999999808999788676
Q gi|254780952|r 18 FVPSCVPNYLKGLN---AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 18 ~~~~~~~~~l~~Ln---~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
T Consensus 101 ~ip~~Ip~fe-~LGLP~~v~~~~a~~-~~GLiLVTGPTGSGKSTTlAsmIDyI--N~~-~~~HIiT 161 (350)
T TIGR01420 101 LIPSKIPTFE-ELGLPRPVLRELAER-PRGLILVTGPTGSGKSTTLASMIDYI--NKN-KAGHIIT 161 (350)
T ss_pred HCCCCCCCHH-HCCCCHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHH--HCC-CCCCCEE
T ss_conf 1153462166-637987899999836-69938987688986789999999787--403-8888256