HHsearch alignment for GI: 254780952 and conserved domain: TIGR01447

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.

Probab=99.71  E-value=1.6e-16  Score=132.23  Aligned_cols=68  Identities=29%  Similarity=0.329  Sum_probs=48.8

Q ss_pred             CHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHC---CCCCH-HHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf             988999985389896-6999588988358999999999980---89997-886762114799999999999851
Q gi|254780952|r   31 NAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICH---KEIPP-SKILAMTFTNQAIQEMKNRLACYL   99 (685)
Q Consensus        31 n~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~---~~~~p-~~Il~iTFT~~AA~el~~Ri~~~l   99 (685)
T Consensus       229 ~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G-~~~~~I~l~APTGKAa~RL~esl~~~~  301 (753)
T TIGR01447       229 TDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQG-KPRLRIALAAPTGKAAARLAESLRKAV  301 (753)
T ss_pred             HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             3799999999860876899879889778999999999999898649-974047886684479999999999886